RPSBLAST alignment for GI: 254780289 and conserved domain: PRK07405

>gnl|CDD|180963 PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated. Length = 317
 Score =  223 bits (571), Expect = 9e-59
 Identities = 108/249 (43%), Positives = 171/249 (68%), Gaps = 8/249 (3%)

Query: 420 TGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNI 479
             +S  E R   S + +GE     AK++MVEANLRLV+SVAKKY  R +  LDLIQEG I
Sbjct: 65  AKLSEEELR---SAIAEGE----AAKRKMVEANLRLVVSVAKKYLKRNVDLLDLIQEGTI 117

Query: 480 GLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRM 539
           G+ +  EKFD   GY+FSTYA WW++QAITR+IA++S TIR+P+H+ +K++K+ +  R++
Sbjct: 118 GMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQL 177

Query: 540 SNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVS 599
           S ++ R  T  E+A++L +  + VR+ L+  ++P+SL+  +GD   + LG+ +ED  A S
Sbjct: 178 SQQLGRAATIGELAEELELTPKQVREYLERARQPLSLDLRVGDNQDTELGELLEDTGA-S 236

Query: 600 PLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQI 659
           P D A Q++L+    R++  LTP+++ V+ +RFG+      TL ++G++  ++RER+RQI
Sbjct: 237 PEDFATQSSLQLDLERLMEDLTPQQKEVIALRFGLEDGQPLTLAKIGERLNISRERVRQI 296

Query: 660 EAKAIRKLK 668
           E +A+ KL+
Sbjct: 297 EREALSKLR 305