RPSBLAST alignment for GI: 254780289 and conserved domain: PRK07405
>gnl|CDD|180963 PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated. Length = 317
Score = 223 bits (571), Expect = 9e-59
Identities = 108/249 (43%), Positives = 171/249 (68%), Gaps = 8/249 (3%)
Query: 420 TGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNI 479
+S E R S + +GE AK++MVEANLRLV+SVAKKY R + LDLIQEG I
Sbjct: 65 AKLSEEELR---SAIAEGE----AAKRKMVEANLRLVVSVAKKYLKRNVDLLDLIQEGTI 117
Query: 480 GLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRM 539
G+ + EKFD GY+FSTYA WW++QAITR+IA++S TIR+P+H+ +K++K+ + R++
Sbjct: 118 GMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKSRTIRLPIHITEKLNKIKKAQRQL 177
Query: 540 SNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVS 599
S ++ R T E+A++L + + VR+ L+ ++P+SL+ +GD + LG+ +ED A S
Sbjct: 178 SQQLGRAATIGELAEELELTPKQVREYLERARQPLSLDLRVGDNQDTELGELLEDTGA-S 236
Query: 600 PLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQI 659
P D A Q++L+ R++ LTP+++ V+ +RFG+ TL ++G++ ++RER+RQI
Sbjct: 237 PEDFATQSSLQLDLERLMEDLTPQQKEVIALRFGLEDGQPLTLAKIGERLNISRERVRQI 296
Query: 660 EAKAIRKLK 668
E +A+ KL+
Sbjct: 297 EREALSKLR 305