RPSBLAST alignment for GI: 254780289 and conserved domain: PRK07406
>gnl|CDD|180964 PRK07406, PRK07406, RNA polymerase sigma factor RpoD; Validated. Length = 373
Score = 293 bits (751), Expect = 1e-79
Identities = 136/262 (51%), Positives = 188/262 (71%), Gaps = 8/262 (3%)
Query: 419 ETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGN 478
+ + +FR + + R+ AK++MV++NLRLV+S+AKKY NRGL F DLIQEG+
Sbjct: 119 LVDMPLPKFRRRLMLGRR-------AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 171
Query: 479 IGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARR 538
+GL++AAEKFD GYKFSTYA WW++QAITR+IADQS TIR+PVH+ + I ++ +T +
Sbjct: 172 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKV 231
Query: 539 MSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAV 598
+S + R+PT EEIA+ + M +E +R + K + PISLETPIG E+ S LGDFIE
Sbjct: 232 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE- 290
Query: 599 SPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQ 658
+P D + LRE VLA+L+PRE VLR+R+G+ TLEE+G+ F VTRERIRQ
Sbjct: 291 TPEDDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 350
Query: 659 IEAKAIRKLKHPSRSKKLRSFL 680
IEAKA+RKL+HP+R+ L+ ++
Sbjct: 351 IEAKALRKLRHPNRNSVLKEYI 372