RPSBLAST alignment for GI: 254780289 and conserved domain: PRK07406

>gnl|CDD|180964 PRK07406, PRK07406, RNA polymerase sigma factor RpoD; Validated. Length = 373
 Score =  293 bits (751), Expect = 1e-79
 Identities = 136/262 (51%), Positives = 188/262 (71%), Gaps = 8/262 (3%)

Query: 419 ETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGN 478
              + + +FR  + + R+       AK++MV++NLRLV+S+AKKY NRGL F DLIQEG+
Sbjct: 119 LVDMPLPKFRRRLMLGRR-------AKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGS 171

Query: 479 IGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARR 538
           +GL++AAEKFD   GYKFSTYA WW++QAITR+IADQS TIR+PVH+ + I ++ +T + 
Sbjct: 172 LGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKV 231

Query: 539 MSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAV 598
           +S +  R+PT EEIA+ + M +E +R + K  + PISLETPIG E+ S LGDFIE     
Sbjct: 232 LSQEFGRKPTEEEIAESMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEADGE- 290

Query: 599 SPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQ 658
           +P D   +  LRE    VLA+L+PRE  VLR+R+G+      TLEE+G+ F VTRERIRQ
Sbjct: 291 TPEDDVAKNLLREDLEGVLATLSPRERDVLRLRYGLDDGRMKTLEEIGQIFNVTRERIRQ 350

Query: 659 IEAKAIRKLKHPSRSKKLRSFL 680
           IEAKA+RKL+HP+R+  L+ ++
Sbjct: 351 IEAKALRKLRHPNRNSVLKEYI 372