RPSBLAST alignment for GI: 254780289 and conserved domain: COG1191

>gnl|CDD|31384 COG1191, FliA, DNA-directed RNA polymerase specialized sigma subunit [Transcription]. Length = 247

 Score =  117 bits (295), Expect = 9e-27
 Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 9/231 (3%)

Query: 440 EASIAKKEMVEANLRLVISVAKKYTNRGLQFL-DLIQEGNIGLMKAAEKFDWCLGYKFST 498
           E     + ++E  L LV S+A+K+ NRG     DLIQ G IGL+KA E++D   G KFST
Sbjct: 20  EGDEEARRLIERYLPLVKSIARKFENRGPSEYDDLIQIGMIGLIKAIERYDPSKGTKFST 79

Query: 499 YAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAM 558
           YA+  ++  I   +      +++P  +R+   ++      +  ++ REPT EEIA++L +
Sbjct: 80  YAVRRIRGEILDYLRKNDS-VKVPRSLRELGRRIEEAIDELEQELGREPTDEEIAEELGI 138

Query: 559 PVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLA 618
             E   + L         +    DED     D   D    +P D   +  L E     + 
Sbjct: 139 DKEEYIEALLAIN---GSQLLSLDEDVLKDDDDDVDDQIENPDDGVEKEELLEILKEAIE 195

Query: 619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669
            L  RE+ VL +R+   +    T +E+ +   ++  R+ ++  KAI+KL+ 
Sbjct: 196 PLPEREKLVLVLRYKEEL----TQKEIAEVLGISESRVSRLHKKAIKKLRK 242