HHsearch alignment for GI: 254780290 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=92.12 E-value=0.036 Score=33.50 Aligned_cols=97 Identities=25% Similarity=0.328 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCC----CCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf 2222222222221134444432222212222---22221112232211111----12233222--222222111122222
Q gi|254780290|r 139 QTANLRSGQTVLIHGGSSGIGTTAIQLASYF---GATVYTTAKSEEKCLAC----LKLGAKHA--INYLKEDFLEILQKE 209 (332)
Q Consensus 139 ~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~---G~~vi~~~~~~~~~~~~----~~lGa~~v--i~~~~~~~~~~i~~~ 209 (332)
T Consensus 150 ~~L~p~pge~VlD~--cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~----~~ 223 (355)
T COG0144 150 LVLDPKPGERVLDL--CAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLA----EL 223 (355)
T ss_pred HHCCCCCCCEEEEC--CCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCC----CC
T ss_conf 97199997968880--7999769999999668998769974498789999999999719983489951330143----11
Q ss_pred CCCC-CCCCCC-C--CCCCCCC--------------------------CCCCCCCCCCCCCE
Q ss_conf 2222-111222-2--1111112--------------------------22221122345304
Q gi|254780290|r 210 TQGR-GIDIIL-D--MVGAEYL--------------------------NQHLTLLSKEGKLI 241 (332)
Q Consensus 210 t~g~-g~Divi-d--~~G~~~~--------------------------~~~~~~l~~~G~iv 241 (332)
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LV 285 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLV 285 (355)
T ss_pred CCCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 34557778599879998771133581232038999999999999999999998448798899