HHsearch alignment for GI: 254780290 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=93.74 E-value=0.0066 Score=38.34 Aligned_cols=77 Identities=19% Similarity=0.241 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---CCCCCC----CCCCCCC----CCCCCCCCCCC
Q ss_conf 222222113444443222221222222221112232211111-12---233222----2222221----11122222222
Q gi|254780290|r 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLAC-LK---LGAKHA----INYLKED----FLEILQKETQG 212 (332)
Q Consensus 145 ~g~~vlV~ga~g~vG~~a~qla~~~G~~vi~~~~~~~~~~~~-~~---lGa~~v----i~~~~~~----~~~~i~~~t~g 212 (332)
T Consensus 3 ~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~-- 80 (255)
T PRK09186 3 EGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERY-- 80 (255)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH--
T ss_conf 959899979586899999999998799999996988999999999987059807999846899999999999999981--
Q ss_pred CCCCCCCCCCC
Q ss_conf 21112222111
Q gi|254780290|r 213 RGIDIILDMVG 223 (332)
Q Consensus 213 ~g~Divid~~G 223 (332)
T Consensus 81 g~id~lVnnA~ 91 (255)
T PRK09186 81 GKIDGAVNCAY 91 (255)
T ss_pred CCCCEEEECCC
T ss_conf 99778997576