HHsearch alignment for GI: 254780290 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=93.74  E-value=0.0066  Score=38.34  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC---CCCCCC----CCCCCCC----CCCCCCCCCCC
Q ss_conf             222222113444443222221222222221112232211111-12---233222----2222221----11122222222
Q gi|254780290|r  145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLAC-LK---LGAKHA----INYLKED----FLEILQKETQG  212 (332)
Q Consensus       145 ~g~~vlV~ga~g~vG~~a~qla~~~G~~vi~~~~~~~~~~~~-~~---lGa~~v----i~~~~~~----~~~~i~~~t~g  212 (332)
T Consensus         3 ~gK~~lVTGgs~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt~~~~v~~~~~~~~~~~--   80 (255)
T PRK09186          3 EGKTILITGAGGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDITDQESLEEFLSKSQERY--   80 (255)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHH--
T ss_conf             959899979586899999999998799999996988999999999987059807999846899999999999999981--


Q ss_pred             CCCCCCCCCCC
Q ss_conf             21112222111
Q gi|254780290|r  213 RGIDIILDMVG  223 (332)
Q Consensus       213 ~g~Divid~~G  223 (332)
T Consensus        81 g~id~lVnnA~   91 (255)
T PRK09186         81 GKIDGAVNCAY   91 (255)
T ss_pred             CCCCEEEECCC
T ss_conf             99778997576