HHsearch alignment for GI: 254780290 and conserved domain: cd01065

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=90.85  E-value=0.023  Score=34.72  Aligned_cols=81  Identities=21%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             111222222222222113444443222221222222-221112232211111-122332222222221111222222222
Q gi|254780290|r  136 NLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGA-TVYTTAKSEEKCLAC-LKLGAKHAINYLKEDFLEILQKETQGR  213 (332)
Q Consensus       136 ~l~~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~G~-~vi~~~~~~~~~~~~-~~lGa~~vi~~~~~~~~~~i~~~t~g~  213 (332)
T Consensus         9 ~l~~~~~~~~~k~vlIlG-aGGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~-~~~~~~~~~~------~~   80 (155)
T cd01065           9 ALEEAGIELKGKKVLILG-AGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGI-AIAYLDLEEL------LA   80 (155)
T ss_pred             HHHHCCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEECCHHHH------HC
T ss_conf             999729985799999986-758999999999971998228860899999999998501366-4010453443------15


Q ss_pred             CCCCCCCCCCC
Q ss_conf             11122221111
Q gi|254780290|r  214 GIDIILDMVGA  224 (332)
Q Consensus       214 g~Divid~~G~  224 (332)
T Consensus        81 ~~dliIN~tp~   91 (155)
T cd01065          81 EADLIINTTPV   91 (155)
T ss_pred             CCCEEEECCCC
T ss_conf             68879876778