HHsearch alignment for GI: 254780290 and conserved domain: pfam08704
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=94.76 E-value=0.0048 Score=39.28 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=66.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC-CCC
Q ss_conf 11222222222222113444443222221222222--22111223221111112----233222222222111122-222
Q gi|254780290|r 137 LFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGA--TVYTTAKSEEKCLACLK----LGAKHAINYLKEDFLEIL-QKE 209 (332)
Q Consensus 137 l~~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~G~--~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i-~~~ 209 (332)
T Consensus 94 I~~~ldi~PG~~VlEaG--tGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~ 171 (309)
T pfam08704 94 IIMMLELKPGSVVCESG--TGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTE 171 (309)
T ss_pred HHHHHCCCCCCEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCC
T ss_conf 99980989999999836--7842999999997488865999844789999999999874987505889852001366644
Q ss_pred CCCCCCCCC-CCCCCC-CCCCCCCCCCC-CCCCCEEEEEC
Q ss_conf 222211122-221111-11222221122-34530479833
Q gi|254780290|r 210 TQGRGIDII-LDMVGA-EYLNQHLTLLS-KEGKLIIISFL 246 (332)
Q Consensus 210 t~g~g~Div-id~~G~-~~~~~~~~~l~-~~G~iv~~G~~ 246 (332)
T Consensus 172 ~~-~~~D~VfLDlp~PW~ai~~~~~~Lk~~Gg~l~~f~P~ 210 (309)
T pfam08704 172 VS-NKADAVFLDLPAPWEAIPHAAKALKVEGGRLCSFSPC 210 (309)
T ss_pred CC-CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 56-6435899758997998899998606899689999198