HHsearch alignment for GI: 254780290 and conserved domain: pfam08704

>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=94.76  E-value=0.0048  Score=39.28  Aligned_cols=107  Identities=20%  Similarity=0.266  Sum_probs=66.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCC-CCC
Q ss_conf             11222222222222113444443222221222222--22111223221111112----233222222222111122-222
Q gi|254780290|r  137 LFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGA--TVYTTAKSEEKCLACLK----LGAKHAINYLKEDFLEIL-QKE  209 (332)
Q Consensus       137 l~~~~~~~~g~~vlV~ga~g~vG~~a~qla~~~G~--~vi~~~~~~~~~~~~~~----lGa~~vi~~~~~~~~~~i-~~~  209 (332)
T Consensus        94 I~~~ldi~PG~~VlEaG--tGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~~~  171 (309)
T pfam08704        94 IIMMLELKPGSVVCESG--TGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFDTE  171 (309)
T ss_pred             HHHHHCCCCCCEEEEEC--CCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCCC
T ss_conf             99980989999999836--7842999999997488865999844789999999999874987505889852001366644


Q ss_pred             CCCCCCCCC-CCCCCC-CCCCCCCCCCC-CCCCCEEEEEC
Q ss_conf             222211122-221111-11222221122-34530479833
Q gi|254780290|r  210 TQGRGIDII-LDMVGA-EYLNQHLTLLS-KEGKLIIISFL  246 (332)
Q Consensus       210 t~g~g~Div-id~~G~-~~~~~~~~~l~-~~G~iv~~G~~  246 (332)
T Consensus       172 ~~-~~~D~VfLDlp~PW~ai~~~~~~Lk~~Gg~l~~f~P~  210 (309)
T pfam08704       172 VS-NKADAVFLDLPAPWEAIPHAAKALKVEGGRLCSFSPC  210 (309)
T ss_pred             CC-CCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             56-6435899758997998899998606899689999198