RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780290|ref|YP_003064703.1| quinone oxidoreductase
[Candidatus Liberibacter asiaticus str. psy62]
(332 letters)
>gnl|CDD|163034 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase,
PIG3 family. Members of this family are putative
quinone oxidoreductases that belong to the broader
superfamily (modeled by Pfam pfam00107) of
zinc-dependent alcohol (of medium chain length)
dehydrogenases and quinone oxiooreductases. The
alignment shows no motif of conserved Cys residues as
are found in zinc-binding members of the superfamily,
and members are likely to be quinone oxidoreductases
instead. A member of this family in Homo sapiens, PIG3,
is induced by p53 but is otherwise uncharacterized.
Length = 325
Score = 477 bits (1230), Expect = e-135
Identities = 175/324 (54%), Positives = 236/324 (72%), Gaps = 1/324 (0%)
Query: 7 MRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPI 66
M+ + ++ G V+ L E P+P P+ E+LI+V A GVNRPD++QR G YPPP A+ I
Sbjct: 1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDI 60
Query: 67 LGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKGYNAIQAASL 126
LGLEVAG++V +GE + W +GD VCALV GGGYAEY G LP+P+G + ++AA+L
Sbjct: 61 LGLEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAAL 120
Query: 127 PESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLAC 186
PE+FFTVW+NLFQ L++G+TVLIHGG+SGIGTTAIQLA FGA V+TTA S+EKC AC
Sbjct: 121 PETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAAC 180
Query: 187 LKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLIIISFL 246
LGA AINY +EDF+E+++ ET G+G+D+ILD+VG YLN+++ L+ +G+++ I F
Sbjct: 181 EALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQ 240
Query: 247 GGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHTV 306
GG A E++L P+++KR+TITGSTLR R K +I L+ +WPLL S + PVI V
Sbjct: 241 GGRKA-ELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLLASGRVRPVIDKV 299
Query: 307 LPLGKVAMAHDIMEKSEHIGKIIL 330
PL A AH +ME +HIGKI+L
Sbjct: 300 FPLEDAAQAHALMESGDHIGKIVL 323
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 332 bits (853), Expect = 8e-92
Identities = 139/325 (42%), Positives = 208/325 (64%), Gaps = 1/325 (0%)
Query: 7 MRHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPI 66
MR V + G+G +V+ + ESP P P++ ++LIKV A GVNR D +QR+G YPPP ++ I
Sbjct: 2 MRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEI 61
Query: 67 LGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKGYNAIQAASL 126
LGLEVAG + D+G + + GD V AL+ GGGYAEY ++H+GH + IP+GY +AA++
Sbjct: 62 LGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAI 121
Query: 127 PESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLAC 186
PE+F T W L + +++ GQ+VLIH G+SG+GT A QLA +GA T SEEK C
Sbjct: 122 PEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFC 181
Query: 187 LKLGAKHAINYLKE-DFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLIIISF 245
KL A I Y E F ++K T +G++++LD VG YL++ +L+ +GK I+ F
Sbjct: 182 KKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDGKWIVYGF 241
Query: 246 LGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHT 305
+GG + NL P++ KR +I STLR R+D K + S + ++ P + I P++
Sbjct: 242 MGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPYMEEGEIKPIVDR 301
Query: 306 VLPLGKVAMAHDIMEKSEHIGKIIL 330
PL +VA AH +E++++IGK++L
Sbjct: 302 TYPLEEVAEAHTFLEQNKNIGKVVL 326
>gnl|CDD|129062 smart00829, PKS_ER, Enoylreductase. Enoylreductase in Polyketide
synthases.
Length = 288
Score = 181 bits (463), Expect = 2e-46
Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 22/302 (7%)
Query: 37 LIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVN 96
++V A G+N DV+ GL P +LG E AG + +G T +GD V L
Sbjct: 1 EVEVRAAGLNFRDVLIALGLLPGE----AVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP 56
Query: 97 GGGYAEYCLSHQGHTLPIPKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSS 156
G +A Y + +PIP G + +AA++P F T + L A LR G++VLIH +
Sbjct: 57 GS-FATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAG 115
Query: 157 GIGTTAIQLASYFGATVYTTAKSEEK--CLACLKLGAKHAINYLKEDFLEILQKETQGRG 214
G+G AIQLA + GA V+ TA S EK L L + H + F + + + T GRG
Sbjct: 116 GVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRG 175
Query: 215 IDIILDMVGAEYLNQHLTLLSKEGKLIIIS---FLGGNIATEINLNPIISKRITITG--- 268
+D++L+ + E+L+ L L+ G+ + I +++ + P + ++
Sbjct: 176 VDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRD---NSQLGMAP-FRRNVSYHAVDL 231
Query: 269 STLRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHTVLPLGKVAMAHDIMEKSEHIGKI 328
L D ++ + + L+ L V+ P+ TV P+ V A M++ +HIGK+
Sbjct: 232 DALEEGPDRIRELLAEVLE-----LFAEGVLRPLPVTVFPISDVEDAFRYMQQGKHIGKV 286
Query: 329 IL 330
+L
Sbjct: 287 VL 288
>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional.
Length = 334
Score = 113 bits (285), Expect = 6e-26
Identities = 100/342 (29%), Positives = 154/342 (45%), Gaps = 55/342 (16%)
Query: 23 LAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANP-ILGLEVAGKIVDLGEN 81
+ E P P+P K+E++IKV G+ D++Q +G YP K P ILG EV G + ++GEN
Sbjct: 15 IEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKY--PVILGHEVVGTVEEVGEN 72
Query: 82 TTHWNIGDEVCALV-----------NG----------------GGYAEYCLSHQGHTLPI 114
+ GD V +L+ +G G +AEY + +
Sbjct: 73 VKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKV 132
Query: 115 PKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVY 174
P + A +P V+ L + A ++ G+TVL+ G G+G AIQ+A GA V
Sbjct: 133 PPNVSDEGAVIVPCVTGMVYRGLRR-AGVKKGETVLVTGAGGGVGIHAIQVAKALGAKVI 191
Query: 175 TTAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLL 234
SE K K A + I K F E ++K G DI+++ VG L + L L
Sbjct: 192 AVTSSESKAKIVSKY-ADYVIVGSK--FSEEVKKIG---GADIVIETVGTPTLEESLRSL 245
Query: 235 SKEGKLIIISFLGGNI----ATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQLKI 290
+ GK+I I GN+ + L II K I I G + D+ ++L+
Sbjct: 246 NMGGKIIQI----GNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVE-----EALK--- 293
Query: 291 WPLLNSHVIAPVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332
L+ I PVI + L ++ A + ++ IGKI++ P
Sbjct: 294 --LVAEGKIKPVIGAEVSLSEIDKALEELKDKSRIGKILVKP 333
>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent;
Provisional.
Length = 327
Score = 102 bits (255), Expect = 2e-22
Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 27/262 (10%)
Query: 8 RHVAMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPIL 67
+ + +G V+ E P + E+ ++ +AIG+N D R GLYPPP + L
Sbjct: 3 KRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSG-L 61
Query: 68 GLEVAGKIVDLGENTTHWNIGDEVC-ALVNGGGYAEYCLSHQGHTLP------IPKGYNA 120
G E AG + +G H +GD V A G Y+ H +P +P +
Sbjct: 62 GTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSV------HNVPADKAAILPDAISF 115
Query: 121 IQAASLPESFF---TVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTA 177
QAA+ SF TV+ L +T ++ + L H + G+G A Q A GA + T
Sbjct: 116 EQAAA---SFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV 172
Query: 178 KSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKE 237
S +K K GA INY +E+ +E +++ T G+ + ++ D VG + L L +
Sbjct: 173 GSAQKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRR 232
Query: 238 GKLIIISFLGGNIA---TEINL 256
G +++SF GN + T +NL
Sbjct: 233 G--LMVSF--GNASGPVTGVNL 250
>gnl|CDD|163031 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). While some current members of
this family carry designations as putative alginate
lyase, it seems no sequence with a direct
characterization as such is detected by this model.
Length = 336
Score = 101 bits (253), Expect = 3e-22
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 25/235 (10%)
Query: 25 ESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTH 84
+ P P+P ++L++V+AI VN D R + P ILG + AG +V +G+ T
Sbjct: 21 DLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPK-ILGWDAAGVVVAVGDEVTL 79
Query: 85 WNIGDEVC---ALVNGGGYAEYCLSHQ---GHTLPIPKGYNAIQAASLPESFFTVWANLF 138
+ GDEV + G AE+ L + GH PK + +AA+LP + T W LF
Sbjct: 80 FKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHK---PKSLSFAEAAALPLTSITAWELLF 136
Query: 139 QTANLR-----SGQTVLIHGGSSGIGTTAIQLASYF-GATVYTTAKSEEKCLACLKLGAK 192
+ + +LI GG+ G+G+ IQLA G TV TA E L+LGA
Sbjct: 137 DRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAH 196
Query: 193 HAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHL----TLLSKEGKLIII 243
H I++ K L+ + + G++ + + + +QH LL+ +G+ +I
Sbjct: 197 HVIDHSKP-----LKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALI 246
>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase. E. coli His-90
modulates substrate specificity and is believed part of
the active site.
Length = 340
Score = 88.4 bits (219), Expect = 3e-18
Identities = 95/347 (27%), Positives = 147/347 (42%), Gaps = 56/347 (16%)
Query: 23 LAESPIPQPQKEEILIKVEAIGVNRPDV-------MQRKGLYPPPKNANPILGLEVAGKI 75
L E P+P+P E+LIKV A + DV + + PP ++G EVAG++
Sbjct: 13 LTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPP-----QVVGHEVAGEV 67
Query: 76 VDLGENTTHWNIGDEVCA---LVNGGGYAEYCLSHQGHTLPIPKG-----------YNAI 121
V +G +GD V +V G YA C Q H K Y +
Sbjct: 68 VGIGPGVEGIKVGDYVSVETHIVCGKCYA--CRRGQYHVCQNTKIFGVDTDGCFAEYAVV 125
Query: 122 QA-------ASLPESFFTV---WANLFQT--ANLRSGQTVLIHGGSSGIGTTAIQLASYF 169
A S+P + T+ N T A SG++VL+ G IG AI +A
Sbjct: 126 PAQNIWKNPKSIPPEYATIQEPLGNAVHTVLAGPISGKSVLVTGAGP-IGLMAIAVAKAS 184
Query: 170 GAT-VYTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGA-EYL 227
GA V + +E + K+GA + +N KED ++ + T G G+D+ L+M GA + L
Sbjct: 185 GAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKAL 244
Query: 228 NQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSLQ 287
Q L ++ G++ ++ G + + N +I K +TI G T R + R
Sbjct: 245 EQGLQAVTPGGRVSLLGLPPGKVTIDFT-NKVIFKGLTIYGITGRHMFETWYTVSR---- 299
Query: 288 LKIWPLLNSHVI--APVIHTVLPLGKVAMAHDIMEKSEHIGKIILLP 332
L+ S + P+I K ++M +S GK+IL
Sbjct: 300 -----LIQSGKLDLDPIITHKFKFDKFEKGFELM-RSGQTGKVILSL 340
>gnl|CDD|162516 TIGR01751, crot-CoA-red, crotonyl-CoA reductase. The enzyme
modelled by this alignment is responsible for the
conversion of crotonyl-CoA reductase to butyryl-CoA. In
serine cycle methylotrophic bacteria this enzyme is
involved in the process of acetyl-CoA to glyoxylate. In
other bacteria the enzyme is used to produce butyrate
for incorporation into polyketides such as tylosin from
Streptomyces fradiae and coronatine from Pseudomonas
syringae.
Length = 398
Score = 87.2 bits (216), Expect = 5e-18
Identities = 83/373 (22%), Positives = 141/373 (37%), Gaps = 85/373 (22%)
Query: 27 PIPQPQKEEILIKVEAIGVNRPDV-------------MQRKGLYPPPKNANPILGLEVAG 73
P+P+ E+L+ V A GVN +V +++ G P + I+G + +G
Sbjct: 31 PVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFH---IIGSDASG 87
Query: 74 KIVDLGENTTHWNIGDEV---CALVNG-------------------------GGYAEYCL 105
+ +G T W +GDEV C V+ G +AE+ L
Sbjct: 88 VVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFAL 147
Query: 106 SHQGHTLPIPKGYNAIQAASLPESFFTVWANLF--QTANLRSGQTVLIHGGSSGIGTTAI 163
+P PK +AA + T + L A ++ G VLI G + G+G+ A
Sbjct: 148 VKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYAT 207
Query: 164 QLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKED---------------------- 201
QLA G S EK C +LGA+ I+
Sbjct: 208 QLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKR 267
Query: 202 FLEILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLIIISFLGGNIATEINLNPIIS 261
F + +++ T G DI+ + G + + + G ++I G + + +
Sbjct: 268 FGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNH-DYDNRYLWM 326
Query: 262 KRITITGS---TLRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHTVLPLGKVAMAHDI 318
++ I GS LR A ++ R + +I P L+ V PL ++ AH
Sbjct: 327 RQKRIQGSHFANLRE----AWEANRLVAKGRIDPTLS---------KVYPLEEIGQAHQD 373
Query: 319 MEKSEHIGKIILL 331
+ ++ H G + +L
Sbjct: 374 VHRNHHQGNVAVL 386
>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated.
Length = 341
Score = 82.6 bits (205), Expect = 1e-16
Identities = 94/350 (26%), Positives = 152/350 (43%), Gaps = 68/350 (19%)
Query: 23 LAESPIPQPQKEEILIKVEAIGVNRPDVMQRK------GLYPPPKNANPILGLEVAGKIV 76
L + P+P+P ++LIKV+ + DV P P ++G E G++V
Sbjct: 15 LTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPM----VVGHEFVGEVV 70
Query: 77 DLGENTTHWNIGDEVCA---LVNGGGYAEYCLSHQGH----TLPIPKGYNAIQA----AS 125
++G T + +GD V +V G+ C + + H T + G N A
Sbjct: 71 EVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLCRNTKGV--GVNRPGAFAEYLV 126
Query: 126 LPESFFTVW----------ANLFQ-------TA---NLRSGQTVLIHGGSSG-IGTTAIQ 164
+P F VW A +F TA +L G+ VLI G +G IG A
Sbjct: 127 IPA--FNVWKIPDDIPDDLAAIFDPFGNAVHTALSFDL-VGEDVLITG--AGPIGIMAAA 181
Query: 165 LASYFGAT-VYTTAKSEEKC-LACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMV 222
+A + GA V T +E + LA K+GA A+N KED +++ + G D+ L+M
Sbjct: 182 VAKHVGARHVVITDVNEYRLELA-RKMGATRAVNVAKEDLRDVMAELGMTEGFDVGLEMS 240
Query: 223 GA-EYLNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQS 281
GA Q L ++ G++ ++ G++A I+ N +I K +TI G R + +
Sbjct: 241 GAPSAFRQMLDNMNHGGRIAMLGIPPGDMA--IDWNKVIFKGLTIKGIYGREMFETWYKM 298
Query: 282 IRDSLQLKIWPLLNSHV-IAPVIHTVLPLGKVAMAHDIMEKSEHIGKIIL 330
LL S + ++P+I P+ + M +S GK+IL
Sbjct: 299 SA---------LLQSGLDLSPIITHRFPIDDFQKGFEAM-RSGQSGKVIL 338
>gnl|CDD|149352 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain. This is
the catalytic domain of alcohol dehydrogenases. Many of
them contain an inserted zinc binding domain. This
domain has a GroES-like structure.
Length = 108
Score = 65.7 bits (161), Expect = 2e-11
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 28/107 (26%)
Query: 35 EILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCA- 93
E+L++V+A G+ D+ +G PP K ILG E AG + ++G T +GD V
Sbjct: 3 EVLVRVKAAGICGSDLHIYRGEPPPVK-LPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61
Query: 94 --------------------------LVNGGGYAEYCLSHQGHTLPI 114
+ GG+AEY + + +P+
Sbjct: 62 PLIPCGKCAACREGRENLCPNGKFLGVHLDGGFAEYVVVPARNLVPL 108
>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional.
Length = 339
Score = 59.4 bits (144), Expect = 1e-09
Identities = 74/287 (25%), Positives = 119/287 (41%), Gaps = 42/287 (14%)
Query: 17 KSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIV 76
K N + + E PIPQP E+ +KV+ G+ D +G P K ++G E G I
Sbjct: 8 KPNSLAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPR-VIGHEFFGVID 66
Query: 77 DLGENTTHWNIGDEV-------------CAL----------VNG----GGYAEYCLSHQG 109
+GE IG+ V C++ V G GG++EY +
Sbjct: 67 AVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAK 126
Query: 110 HTLPIPKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQ-LASY 168
+ IP A Q A + E FT+ AN+ LI+G +G T +Q L
Sbjct: 127 NAHRIPDAI-ADQYAVMVEP-FTIAANVTGRTGPTEQDVALIYGAGP-VGLTIVQVLKGV 183
Query: 169 FGA-TVYTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGID--IILDMVG-A 224
+ V + +E+ + GA IN +E E L++ +GI +I+D
Sbjct: 184 YNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEE----KGIKPTLIIDAACHP 239
Query: 225 EYLNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITITGSTL 271
L + +TL S +++++ F + +EI I K ++I S L
Sbjct: 240 SILEEAVTLASPAARIVLMGF--SSEPSEIVQQGITGKELSIFSSRL 284
>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active
dehydrogenase/acetaldehyde-active reductase;
Provisional.
Length = 338
Score = 59.3 bits (144), Expect = 1e-09
Identities = 54/208 (25%), Positives = 93/208 (44%), Gaps = 34/208 (16%)
Query: 35 EILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEV--- 91
E L+K+E GV D+ G + ILG E G + ++G T +GD V
Sbjct: 27 EALVKMEYCGVCHTDLHVANGDFGDK--TGRILGHEGIGIVKEVGPGVTSLKVGDRVSIA 84
Query: 92 -------------------CALVNGGGY------AEYCLSHQGHTLPIPKGYNAIQAASL 126
C V GY AE C+ + + +P+G + QA+S+
Sbjct: 85 WFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSI 144
Query: 127 PESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLA-SYFGATVYTTAKSEEKCLA 185
+ T + + + + ++ GQ + I+ G+ G+G A+Q A + F A V +++K
Sbjct: 145 TCAGVTTYKAI-KVSGIKPGQWIAIY-GAGGLGNLALQYAKNVFNAKVIAVDINDDKLAL 202
Query: 186 CLKLGAKHAINYLK-EDFLEILQKETQG 212
++GA IN + ED +I+Q++T G
Sbjct: 203 AKEVGADLTINSKRVEDVAKIIQEKTGG 230
>gnl|CDD|178699 PLN03154, PLN03154, putative allyl alcohol dehydrogenase;
Provisional.
Length = 348
Score = 59.1 bits (143), Expect = 1e-09
Identities = 63/229 (27%), Positives = 96/229 (41%), Gaps = 32/229 (13%)
Query: 58 PPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCALVNGGGYAEYCLSHQGHTLPIPKG 117
PP I G V+ K+VD + ++ GD + + G+ EY L I
Sbjct: 72 PPFVPGQRIEGFGVS-KVVD--SDDPNFKPGDLISGIT---GWEEYSL--------IRSS 117
Query: 118 YNAIQAASL----PESF---------FTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQ 164
N ++ L P S+ FT +A ++ + + G +V + S +G Q
Sbjct: 118 DNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQ 177
Query: 165 LASYFGATVYTTAKSEEKC-LACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVG 223
LA G V +A S +K L KLG A NY +E L+ K GIDI D VG
Sbjct: 178 LAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNVG 237
Query: 224 AEYLNQHLTLLSKEGKLIIISFLGGNIATEI----NLNPIISKRITITG 268
+ L+ L + G++ + + N + NL +ISKRI + G
Sbjct: 238 GDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQG 286
>gnl|CDD|163033 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP
family. This model represents a subfamily of pfam00107
as defined by Pfam, a superfamily in which some members
are zinc-binding medium-chain alcohol dehydrogenases
while others are quinone oxidoreductases with no bound
zinc. This subfamily includes proteins studied
crystallographically for insight into function: YhdH
from Escherichia coli and YhfP from Bacillus subtilis.
Members bind NADPH or NAD, but not zinc.
Length = 323
Score = 57.6 bits (140), Expect = 4e-09
Identities = 66/232 (28%), Positives = 101/232 (43%), Gaps = 30/232 (12%)
Query: 35 EILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDEVCAL 94
++LIKV +N D + G ++ I G++ AG +V + GDEV +
Sbjct: 28 DVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFREGDEV--I 83
Query: 95 VNG--------GGYAEYCLSHQGHTLPIPKGYNAIQAASLPESFFTVWANLFQTANLRSG 146
V G GGY++Y +P+P+G + +A +L + FT A L A R+G
Sbjct: 84 VTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFT--AALSVMALERNG 141
Query: 147 QT-----VLIHGGSSGIGTTAIQLASYFGATVYT-TAKSEEKCLACLKLGAKHAINYLKE 200
T VL+ G + G+G+ A+ + S G V T K+EE+ +LGA I+ +E
Sbjct: 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYL-KELGASEVID--RE 198
Query: 201 DFLEI---LQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLIIISFLGGN 249
D L+KE +D VG L L L G + GG
Sbjct: 199 DLSPPGKPLEKERWAGAVDT----VGGHTLANVLAQLKYGGAVAACGLAGGP 246
>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, mycothiol-dependent formaldehyde
dehydrogenase. Members of this protein family are
mycothiol-dependent formaldehyde dehydrogenase (EC
1.2.1.66). This protein is found, so far, only in the
Actinobacteria (Mycobacterium sp., Streptomyces sp.,
Corynebacterium sp., and related species), where
mycothione replaces glutathione.
Length = 358
Score = 57.5 bits (139), Expect = 5e-09
Identities = 57/241 (23%), Positives = 91/241 (37%), Gaps = 52/241 (21%)
Query: 28 IPQPQKEEILIKVEAIGVNRPDVMQRKGL----YPPPKNANPILGLEVAGKIVDLGENTT 83
+P P E+++ ++A GV D+ R+G +P +LG E AG + +GE T
Sbjct: 21 VPDPGPGEVIVDIQACGVCHTDLHYREGGINDEFPF------LLGHEAAGVVEAVGEGVT 74
Query: 84 HWNIGD-------EVCA------------------------LVNG---------GGYAEY 103
GD VC L +G G +AE
Sbjct: 75 DVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEK 134
Query: 104 CLSHQGHTLPIPKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAI 163
L H G + + A L T ++ G +V + G G+G AI
Sbjct: 135 TLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAI 193
Query: 164 QLASYFGATVYTTAKSEEKCLACLK-LGAKHAINYLKEDFLEILQKETQGRGIDIILDMV 222
A+ GA+ +++ L + GA H +N D +E ++ T G G D+++D V
Sbjct: 194 AGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAV 253
Query: 223 G 223
G
Sbjct: 254 G 254
>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA
dehydrogenase. Members of this protein family are
6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an
enzyme in the anaerobic metabolism of aromatic enzymes
by way of benzoyl-CoA, as seen in Thauera aromatica,
Geobacter metallireducens, and Azoarcus sp. The
experimentally characterized form from T. aromatica uses
only NAD+, not NADP+. Note that Rhodopseudomonas
palustris uses a different pathway to perform a similar
degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Length = 349
Score = 54.5 bits (131), Expect = 4e-08
Identities = 62/280 (22%), Positives = 107/280 (38%), Gaps = 56/280 (20%)
Query: 12 MSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLY---PPPKNANPI-L 67
M+ GK M IP+ ++++KV GV D+ Y +A P+ L
Sbjct: 4 MTEPGKP--MVKTRVEIPELGAGDVVVKVAGCGVCHTDL----SYYYMGVRTNHALPLAL 57
Query: 68 GLEVAGKIVDLGENTTHWNIGDEV----------CALVN-----------------GGGY 100
G E++G+++ G W IG V C L GG+
Sbjct: 58 GHEISGRVIQAGAGAASW-IGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGF 116
Query: 101 AEYCLSHQGHTLPIPKGYNAIQAASLPESFFTVWANLFQT-------ANLRSGQTVLIHG 153
A + + + + + AA LP +V A+ T A L+ G V++ G
Sbjct: 117 ASHIVVPAKGLCVVDEA--RLAAAGLPLEHVSVVADAVTTPYQAAVQAGLKKGDLVIVIG 174
Query: 154 GSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAIN---YLKEDFLEILQKET 210
+ G+G +Q A GA V EK GA +N + ++++
Sbjct: 175 -AGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA 233
Query: 211 QGRGID----IILDMVGAEYLNQH-LTLLSKEGKLIIISF 245
+ RG+ I + G++ + L+LLS G L+++ +
Sbjct: 234 KARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGY 273
>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4
12-hydroxydehydrogenase/15-oxo-prostaglandin
13-reductase. Leukotriene B4 12-hydroxydehydrogenase is
an NADP-dependent enzyme of arachidonic acid metabolism,
responsible for converting leukotriene B4 to the much
less active metabolite 12-oxo-leukotriene B4. The BRENDA
database lists leukotriene B4 12-hydroxydehydrogenase as
one of the synonyms of 2-alkenal reductase (EC
1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin
13-reductase.
Length = 325
Score = 53.5 bits (128), Expect = 7e-08
Identities = 49/189 (25%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 61 KNANPILGLEVAGKIVDLGENTTHWNIGDEVCAL-------VNGGGYAEYCLSHQGHTLP 113
K + ++G +VA ++V+ G V A ++ G E L+ TLP
Sbjct: 55 KEGDTMMGQQVA-RVVE--SKNVALPKGTIVLASPGWTSHSISDGKDLEKLLTEWPDTLP 111
Query: 114 IPKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATV 173
+ A+ +P T + L + ++ G+TV+++ + +G+ Q+A G V
Sbjct: 112 LSL---ALGTVGMPG--LTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKV 166
Query: 174 YTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQHLTL 233
A S+EK KLG A NY LE K+ G D D VG E+ N +
Sbjct: 167 VGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQ 226
Query: 234 LSKEGKLII 242
+ K G++ I
Sbjct: 227 MKKFGRIAI 235
>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase.
Length = 357
Score = 52.5 bits (126), Expect = 1e-07
Identities = 73/280 (26%), Positives = 119/280 (42%), Gaps = 60/280 (21%)
Query: 34 EEILIKVEAIGVNRPDVMQRKG-----LYPPPKNANPILGLEVAGKIVDLGENTTHWNIG 88
E+++IKV G+ D+ Q K YP + G EV G++V++G + + + +G
Sbjct: 35 EDVVIKVIYCGICHTDLHQIKNDLGMSNYPM------VPGHEVVGEVVEVGSDVSKFTVG 88
Query: 89 DEV-----------CALVNG------------------------GGYAEYCLSHQGHTLP 113
D V C+ GG+A + Q +
Sbjct: 89 DIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVK 148
Query: 114 IPKGYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATV 173
IP+G QAA L + TV++ L +SG I G G+G +++A G V
Sbjct: 149 IPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGIL-GLGGVGHMGVKIAKAMGHHV 207
Query: 174 YTTAKSEEKCLACLK-LGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEY-LNQHL 231
+ S++K L+ LGA +YL +Q+ +D I+D V + L +L
Sbjct: 208 TVISSSDKKREEALEHLGAD---DYLVSSDAAEMQEAAD--SLDYIIDTVPVFHPLEPYL 262
Query: 232 TLLSKEGKLIIISFLGGNIATEIN-LNP-IISKRITITGS 269
+LL +GKLI++ G I T + + P ++ R ITGS
Sbjct: 263 SLLKLDGKLILM----GVINTPLQFVTPMLMLGRKVITGS 298
>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family
protein. Members of this model form a distinct subset
of the larger family of oxidoreductases that includes
zinc-binding alcohol dehydrogenases and NADPH:quinone
reductases (pfam00107). The gene neighborhood of members
of this family is not conserved and it appears that no
members are characterized. The sequence of the family
includes 6 invariant cysteine residues and one invariant
histidine. It appears that no member is characterized.
Length = 329
Score = 45.3 bits (107), Expect = 2e-05
Identities = 53/199 (26%), Positives = 81/199 (40%), Gaps = 33/199 (16%)
Query: 25 ESPIPQPQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTH 84
E P+P+P E+L++V A GV R D+ +G P + G EV G++ G +
Sbjct: 19 ERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHR-PRVTPGHEVVGEVAGRGADAGG 77
Query: 85 WNIGDEV--------CALV--------------------NGGGYAEYCLSHQGHTLPIPK 116
+ +GD V C + GGYAEY +P
Sbjct: 78 FAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPT 137
Query: 117 GYNAIQAASLPESFFTVWANLFQTANLRSGQTVLIHG-GSSGIGTTAIQLASYFGATVYT 175
GY+ ++ A L + + L + A+L G + ++G G S T + LA GATV+
Sbjct: 138 GYDDVELAPLLCAGIIGYRALLR-ASLPPGGRLGLYGFGGSAHLTAQVALAQ--GATVHV 194
Query: 176 TAKSEEKCLACLKLGAKHA 194
+ L LGA A
Sbjct: 195 MTRGAAARRLALALGAASA 213
>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase.
Length = 375
Score = 44.6 bits (105), Expect = 4e-05
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 17/182 (9%)
Query: 96 NGGGYAEYCLSHQGHTLPIPKGYNAIQAASLPESFFTVWANL-FQTANLRSGQTVLIHGG 154
N GGY++ + L IP G + A L + TV++ + + SG+ + ++G
Sbjct: 128 NQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNG- 186
Query: 155 SSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLEIL---QKETQ 211
G+G A+++ FG V ++S EK + AI+ L D + QK +
Sbjct: 187 LGGLGHIAVKIGKAFGLRVTVISRSSEK--------EREAIDRLGADSFLVTTDSQKMKE 238
Query: 212 GRG-IDIILDMVGAEY-LNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITITGS 269
G +D I+D V AE+ L +LL GKL+ + + ++ + P++ R + GS
Sbjct: 239 AVGTMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPL--DLPIFPLVLGRKMVGGS 296
Query: 270 TL 271
+
Sbjct: 297 QI 298
>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione
dehydrogenase/class III alcohol dehydrogenase. The
members of this protein family show dual function.
First, they remove formaldehyde, a toxic metabolite, by
acting as S-(hydroxymethyl)glutathione dehydrogenase
(1.1.1.284). S-(hydroxymethyl)glutathione can form
spontaneously from formaldehyde and glutathione, and so
this enzyme previously was designated
glutathione-dependent formaldehyde dehydrogenase. These
same proteins are also designated alcohol dehydrogenase
(EC 1.1.1.1) of class III, for activities that do not
require glutathione; they tend to show poor activity for
ethanol among their various substrate alcohols.
Length = 368
Score = 42.1 bits (99), Expect = 2e-04
Identities = 89/361 (24%), Positives = 139/361 (38%), Gaps = 84/361 (23%)
Query: 31 PQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANP-ILGLEVAGKIVDLGENTTHWNIGD 89
PQK E+L+++ A GV D G P+ P ILG E AG + +GE T +GD
Sbjct: 24 PQKGEVLVRIVATGVCHTDAFTLSG--ADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD 81
Query: 90 EVCALVNGG-GYAEYCLS-----------HQGHTLPIPKG-----------YNAIQAASL 126
V L G ++CLS QG L +P G Y+ + ++
Sbjct: 82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGL-MPDGTSRFSKDGQPIYHYMGCSTF 140
Query: 127 PESFFTVWANL----------------------------FQTANLRSGQTVLIHGGSSGI 158
E +TV + TA + G TV + G GI
Sbjct: 141 SE--YTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVF-GLGGI 197
Query: 159 GTTAIQLASYFGAT-VYTTAKSEEKCLACLKLGAKHAINYLKED--FLEILQKETQGRGI 215
G + IQ A A+ + + K KLGA +N D E++ + T G G+
Sbjct: 198 GLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDG-GV 256
Query: 216 DIILDMVG-AEYLNQHLTLLSKE-GKLIIISFLGGNIATEINLNP--IISKRITITGST- 270
D + +G + L K G+ III G EI+ P +++ R+ GS
Sbjct: 257 DYSFECIGNVNVMRAALECCHKGWGESIIIGVAGA--GQEISTRPFQLVTGRVW-RGSAF 313
Query: 271 --LRRRTDIAKQSIRDSLQLKIWPLLNSHVIAPVIHTVLPLGKVAMAHDIMEKSEHIGKI 328
++ RT++ + ++ +I + + +PL + A D+M H GK
Sbjct: 314 GGVKGRTELP-GIVEQYMKGEI-------ALDDFVTHTMPLEDINEAFDLM----HEGKS 361
Query: 329 I 329
I
Sbjct: 362 I 362
>gnl|CDD|166468 PLN02827, PLN02827, Alcohol dehydrogenase-like.
Length = 378
Score = 41.4 bits (97), Expect = 3e-04
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 11 AMSGYGKSNVMFLAESPIPQPQKEEILIKVEAIGVNRPDV--MQRKGLYPPPKNANPILG 68
A +G + + E + PQ EI IKV + + R D+ + + L+P I G
Sbjct: 15 AAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQALFPR------IFG 68
Query: 69 LEVAGKIVDLGENTTHWNIGDEVCALVNGG-GYAEYCLS 106
E +G + +GE T + GD V + G G +C+S
Sbjct: 69 HEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCIS 107
>gnl|CDD|180879 PRK07201, PRK07201, short chain dehydrogenase; Provisional.
Length = 657
Score = 41.1 bits (97), Expect = 4e-04
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 146 GQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
G+ VLI G SSGIG TAI++A GATV+ A++ E
Sbjct: 371 GKVVLITGASSGIGRATAIKVAEA-GATVFLVARNGEA 407
>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase.
Length = 360
Score = 36.8 bits (85), Expect = 0.009
Identities = 56/246 (22%), Positives = 88/246 (35%), Gaps = 52/246 (21%)
Query: 65 PIL-GLEVAGKIVDLGENTTHWNIGDEVCALV---------------------------- 95
PI+ G E+ G + LG+N + GD V V
Sbjct: 67 PIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNS 126
Query: 96 -------NGGGYAEYCLSHQGHTLPIPKGYNAIQAASLPESFFTVWANLFQTANLRSGQT 148
N GGY++ + Q L P A L + TV++ + G+
Sbjct: 127 IGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKH 186
Query: 149 VLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLEILQK 208
+ + G G+G A+++ FG V + S K AIN L D +
Sbjct: 187 LGV-AGLGGLGHVAVKIGKAFGLKVTVISSSSNK--------EDEAINRLGADSFLVSTD 237
Query: 209 ETQGRG----IDIILDMVGAEY-LNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKR 263
+ + +D I+D V A + L L LL GKLI + E+ + P++ R
Sbjct: 238 PEKMKAAIGTMDYIIDTVSAVHALGPLLGLLKVNGKLITLGL--PEKPLELPIFPLVLGR 295
Query: 264 ITITGS 269
+ GS
Sbjct: 296 KLVGGS 301
>gnl|CDD|180448 PRK06182, PRK06182, short chain dehydrogenase; Validated.
Length = 273
Score = 36.5 bits (85), Expect = 0.010
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 148 TVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
L+ G SSGIG TA +LA+ G TVY A+ +K
Sbjct: 5 VALVTGASSGIGKATARRLAAQ-GYTVYGAARRVDK 39
>gnl|CDD|181721 PRK09242, PRK09242, tropinone reductase; Provisional.
Length = 257
Score = 36.6 bits (85), Expect = 0.010
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 27/113 (23%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFL 203
GQT LI G S GIG A + GA V A+ + A + L E+F
Sbjct: 8 DGQTALITGASKGIGLAIAREFLG-LGADVLIVARDADAL--------AQARDELAEEFP 58
Query: 204 E-----ILQKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKL-IIISFLGGNI 250
E + + ILD V + L I+++ GGNI
Sbjct: 59 EREVHGLAADVSDDEDRRAILDWVEDHW-----------DGLHILVNNAGGNI 100
>gnl|CDD|168279 PRK05866, PRK05866, short chain dehydrogenase; Provisional.
Length = 293
Score = 35.5 bits (82), Expect = 0.022
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEE 181
+G+ +L+ G SSGIG A + + GATV A+ E+
Sbjct: 39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARRED 75
>gnl|CDD|180258 PRK05786, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 238
Score = 34.4 bits (79), Expect = 0.047
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 146 GQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKH-AINYLKEDF 202
G+ V I G S G+G A GA V +++E K K +K+ I+Y+ D
Sbjct: 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDV 62
>gnl|CDD|180593 PRK06500, PRK06500, short chain dehydrogenase; Provisional.
Length = 249
Score = 34.2 bits (79), Expect = 0.049
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 146 GQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEE 181
G+T LI GG+SGIG TA Q + GA V T +
Sbjct: 6 GKTALITGGTSGIGLETARQFLAE-GARVAITGRDPA 41
>gnl|CDD|180183 PRK05653, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 246
Score = 34.0 bits (79), Expect = 0.051
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
G+T L+ G S GIG A++LA+ GA V +EE
Sbjct: 4 QGKTALVTGASRGIGRAIALRLAAD-GAKVVIYDSNEEA 41
>gnl|CDD|180604 PRK06523, PRK06523, short chain dehydrogenase; Provisional.
Length = 260
Score = 33.7 bits (78), Expect = 0.070
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFL- 203
+G+ L+ GG+ GIG + GA V TTA+S L + ++ D
Sbjct: 8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDDLP-------EGVEFVAADLTT 60
Query: 204 ----EILQKETQGR--GIDIILDMVGA 224
+ + R G+DI++ ++G
Sbjct: 61 AEGCAAVARAVLERLGGVDILVHVLGG 87
>gnl|CDD|168407 PRK06125, PRK06125, short chain dehydrogenase; Provisional.
Length = 259
Score = 33.5 bits (77), Expect = 0.085
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 146 GQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLA 185
G+ VLI G S GIG A + + G ++ A+ + A
Sbjct: 7 GKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEA 46
>gnl|CDD|180817 PRK07060, PRK07060, short chain dehydrogenase; Provisional.
Length = 245
Score = 33.5 bits (77), Expect = 0.085
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAK 178
SG++VL+ G SSGIG + GA V A+
Sbjct: 8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAAR 41
>gnl|CDD|180818 PRK07062, PRK07062, short chain dehydrogenase; Provisional.
Length = 265
Score = 33.5 bits (77), Expect = 0.088
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEK 182
G+ ++ GGSSGIG ++L GA+V + EE+
Sbjct: 7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEER 44
>gnl|CDD|181349 PRK08278, PRK08278, short chain dehydrogenase; Provisional.
Length = 273
Score = 33.3 bits (77), Expect = 0.093
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 145 SGQTVLIHGGSSGIGTTAIQL-ASYFGATVYTTAKSEE 181
SG+T+ I G S GIG AI L A+ GA + AK+ E
Sbjct: 5 SGKTLFITGASRGIG-LAIALRAARDGANIVIAAKTAE 41
>gnl|CDD|181077 PRK07677, PRK07677, short chain dehydrogenase; Provisional.
Length = 252
Score = 32.7 bits (75), Expect = 0.13
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 146 GQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
+ V+I GGSSG+G A + A GA V T +++EK
Sbjct: 1 EKVVIITGGSSGMGKAMAKRFAEE-GANVVITGRTKEK 37
>gnl|CDD|129369 TIGR00268, TIGR00268, conserved hypothetical protein TIGR00268.
The N-terminal region of the model shows similarity to
Argininosuccinate synthase proteins using PSI-blast and
using the recognize protein identification server.
Length = 252
Score = 32.5 bits (74), Expect = 0.17
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 12/55 (21%)
Query: 176 TAKSEEKCLACLKLGAKHAINYLKEDFLEILQKETQGRGIDIILDMVGAEYLNQH 230
A EE+C C K+ L IL KE + RG D+++D A+ L H
Sbjct: 81 RANVEERCYFC------------KKMVLSILVKEAEKRGYDVVVDGTNADDLFDH 123
>gnl|CDD|180447 PRK06181, PRK06181, short chain dehydrogenase; Provisional.
Length = 263
Score = 31.9 bits (73), Expect = 0.26
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 146 GQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
G+ V+I G S GIG A++LA GA + A++E +
Sbjct: 1 GKVVIITGASEGIGRALAVRLARA-GAQLVLAARNETR 37
>gnl|CDD|180844 PRK07109, PRK07109, short chain dehydrogenase; Provisional.
Length = 334
Score = 31.4 bits (72), Expect = 0.29
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 144 RSGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEE 181
Q V+I G S+G+G TA A GA V A+ EE
Sbjct: 6 IGRQVVVITGASAGVGRATARAFARR-GAKVVLLARGEE 43
>gnl|CDD|180464 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate
dehydrogenase; Provisional.
Length = 263
Score = 31.5 bits (72), Expect = 0.33
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 146 GQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKC 183
GQ LI GG SGIG ++ GA V +S EK
Sbjct: 6 GQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKL 43
>gnl|CDD|181148 PRK07856, PRK07856, short chain dehydrogenase; Provisional.
Length = 252
Score = 31.4 bits (72), Expect = 0.35
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYF---GATVYTTAKSE 180
+G+ VL+ GG+ GIG +A F GATV +
Sbjct: 5 TGRVVLVTGGTRGIGA---GIARAFLAAGATVVVCGRRA 40
>gnl|CDD|180617 PRK06550, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 235
Score = 31.1 bits (71), Expect = 0.36
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYF--GATVY 174
+TVLI G +SGIG Q ++ GA VY
Sbjct: 4 MTKTVLITGAASGIG--LAQARAFLAQGAQVY 33
>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like.
Length = 381
Score = 31.3 bits (71), Expect = 0.37
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 31 PQKEEILIKVEAIGVNRPDVMQRKGLYPPPKNANPILGLEVAGKIVDLGENTTHWNIGDE 90
PQK E+ IK+ + D+ KG + ILG E AG + +GE GD
Sbjct: 33 PQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGVEDLKAGDH 92
Query: 91 VCALVNGG-GYAEYC 104
V + NG G YC
Sbjct: 93 VIPIFNGECGDCRYC 107
>gnl|CDD|181295 PRK08213, PRK08213, gluconate 5-dehydrogenase; Provisional.
Length = 259
Score = 31.1 bits (71), Expect = 0.38
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 20/72 (27%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLE 204
SG+T L+ GGS G+G +Q+A G GA+ ++ K + LE
Sbjct: 11 SGKTALVTGGSRGLG---LQIAEALGEA-----------------GARVVLSARKAEELE 50
Query: 205 ILQKETQGRGID 216
+ GID
Sbjct: 51 EAAAHLEALGID 62
>gnl|CDD|180445 PRK06179, PRK06179, short chain dehydrogenase; Provisional.
Length = 270
Score = 31.0 bits (71), Expect = 0.42
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 144 RSGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
+ + L+ G SSGIG TA +LA G V+ T+++ +
Sbjct: 2 SNSKVALVTGASSGIGRATAEKLARA-GYRVFGTSRNPAR 40
>gnl|CDD|181113 PRK07775, PRK07775, short chain dehydrogenase; Provisional.
Length = 274
Score = 30.5 bits (69), Expect = 0.56
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 147 QTVLIHGGSSGIGT-TAIQLASYFGATVYTTAKSEEKC 183
+ L+ G SSGIG TAI+LA+ G V A+ EKC
Sbjct: 11 RPALVAGASSGIGAATAIELAAA-GFPVALGARRVEKC 47
>gnl|CDD|183714 PRK12742, PRK12742, oxidoreductase; Provisional.
Length = 237
Score = 30.1 bits (68), Expect = 0.87
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 145 SGQTVLIHGGSSGIGTTAIQ-LASYFGATVYTTAKSEEK 182
+G+ VL+ GGS GIG ++ + +T A S++
Sbjct: 5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDA 43
>gnl|CDD|179703 PRK04000, PRK04000, translation initiation factor IF-2 subunit
gamma; Validated.
Length = 411
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 24 AESPIPQPQKEEILIKVEAIGVNRPDVMQRK 54
A P PQPQ +E L+ ++ IG+ ++Q K
Sbjct: 118 ANEPCPQPQTKEHLMALDIIGIKNIVIVQNK 148
>gnl|CDD|180897 PRK07231, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 251
Score = 29.4 bits (67), Expect = 1.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEE 181
G+ ++ G SSGIG A + A+ GA V T ++EE
Sbjct: 4 EGKVAIVTGASSGIGEGIARRFAAE-GARVVVTDRNEE 40
>gnl|CDD|180126 PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Validated.
Length = 248
Score = 29.4 bits (67), Expect = 1.4
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 145 SGQTVLIHGGSSGIGT-TAIQLASYFGATVYTTAKSEEK 182
G+ L+ G S GIG A +LA+ GA V S E
Sbjct: 4 EGKVALVTGASRGIGRAIAERLAAQ-GANVVINYASSEA 41
>gnl|CDD|162843 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase. Trehalose
is a glucose disaccharide that serves in many biological
systems as a compatible solute for protection against
hyperosmotic and thermal stress. This family describes
trehalose-6-phosphate hydrolase, product of the treC (or
treA) gene, which is often found together with a
trehalose uptake transporter and a trehalose operon
repressor.
Length = 543
Score = 29.2 bits (66), Expect = 1.5
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 200 EDFLEILQKETQGRGIDIILDMV 222
DF E L E + R I I+LDMV
Sbjct: 75 ADF-EELVSEAKKRNIKIMLDMV 96
>gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 29.3 bits (66), Expect = 1.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 245 FLGGNIATEINLNPIISKR 263
L G IA EI L+P ++KR
Sbjct: 333 HLAGIIAAEIGLDPALAKR 351
>gnl|CDD|163393 TIGR03680, eif2g_arch, translation initiation factor 2 subunit
gamma. eIF-2 functions in the early steps of protein
synthesis by forming a ternary complex with GTP and
initiator tRNA.
Length = 406
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 24 AESPIPQPQKEEILIKVEAIGVNRPDVMQRK 54
A P PQPQ +E L+ +E IG+ ++Q K
Sbjct: 113 ANEPCPQPQTKEHLMALEIIGIKNIVIVQNK 143
>gnl|CDD|180460 PRK06196, PRK06196, oxidoreductase; Provisional.
Length = 315
Score = 29.3 bits (66), Expect = 1.6
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 145 SGQTVLIHGGSSGIGT-TAIQLASYFGATVYTTAKSEEK 182
SG+T ++ GG SG+G T LA GA V A+ +
Sbjct: 25 SGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDV 62
>gnl|CDD|180439 PRK06171, PRK06171, sorbitol-6-phosphate 2-dehydrogenase;
Provisional.
Length = 266
Score = 28.8 bits (65), Expect = 1.8
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Query: 132 TVWANLFQTANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVY 174
W NL G+ +++ GGSSGIG ++ GA V
Sbjct: 2 QDWLNL-------QGKIIIVTGGSSGIGLAIVKELLANGANVV 37
>gnl|CDD|180984 PRK07454, PRK07454, short chain dehydrogenase; Provisional.
Length = 241
Score = 28.8 bits (65), Expect = 1.9
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 15/99 (15%)
Query: 142 NLRSGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEKCLA----CLKLGAKHAIN 196
+L S LI G SSGIG TA+ A G + A+S++ A G K
Sbjct: 2 SLNSMPRALITGASSGIGKATALAFAKA-GWDLALVARSQDALEALAAELRSTGVK--AA 58
Query: 197 YLKEDFLEILQ-----KETQGRG--IDIILDMVGAEYLN 228
D E + D++++ G Y
Sbjct: 59 AYSIDLSNPEAIAPGIAELLEQFGCPDVLINNAGMAYTG 97
>gnl|CDD|180804 PRK07041, PRK07041, short chain dehydrogenase; Provisional.
Length = 230
Score = 28.8 bits (65), Expect = 2.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 150 LIHGGSSGIGTTAIQLASYFGATVYTTAKSEEK 182
L+ GGSSGIG + + GA V ++S ++
Sbjct: 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDR 33
>gnl|CDD|183775 PRK12826, PRK12826, 3-ketoacyl-(acyl-carrier-protein) reductase;
Reviewed.
Length = 251
Score = 28.7 bits (65), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
G+ L+ G + GIG A++LA+ GA V +
Sbjct: 5 EGRVALVTGAARGIGRAIAVRLAAD-GAEVIVVDICGDD 42
>gnl|CDD|181299 PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase;
Validated.
Length = 252
Score = 28.7 bits (65), Expect = 2.4
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATV 173
SG+TV + G + GIG A+ GA V
Sbjct: 7 SGKTVWVTGAAQGIGYAVALAFVE-AGAKV 35
>gnl|CDD|168186 PRK05693, PRK05693, short chain dehydrogenase; Provisional.
Length = 274
Score = 28.6 bits (64), Expect = 2.5
Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 148 TVLIHGGSSGIGTTAIQLASYF---GATVYTTAKSEE 181
VLI G SSGIG LA F G V+ TA+ E
Sbjct: 3 VVLITGCSSGIGRA---LADAFKAAGYEVWATARKAE 36
>gnl|CDD|151103 pfam10565, NMDAR2_C, N-methyl D-aspartate receptor 2B3 C-terminus.
This domain is found at the C-terminus of many
NMDA-receptor proteins, many of which also carry the
Ligated ion-channel family pfam00060 further upstream as
well as the ANF_receptor family pfam01094. This region
is predicted to be a large extra-cellular domain of the
NMDA receptor proteins, being highly hydrophilic, and is
thought to be integrally involved in the function of the
receptor. The region also carries a number of potential
N-glycosylation sites.
Length = 660
Score = 28.6 bits (64), Expect = 2.6
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
Query: 152 HGGSSGIGTTAI-------QLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLE 204
GG+ G +L+ Y G + T+ +C AC G + I+ ED L
Sbjct: 378 GGGADRQGGGDTHCRSCLSKLSGYSGGVLRTSRSPCNRCDACKHSGNLYDIS---EDQLL 434
Query: 205 ILQKETQGRGID 216
+ +G G
Sbjct: 435 QEESHGEGDGGV 446
>gnl|CDD|180993 PRK07478, PRK07478, short chain dehydrogenase; Provisional.
Length = 254
Score = 28.4 bits (64), Expect = 2.8
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 142 NLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEE 181
+G+ +I G SSGIG A +L + GA V A+ +
Sbjct: 2 MRLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQA 41
>gnl|CDD|183778 PRK12829, PRK12829, short chain dehydrogenase; Provisional.
Length = 264
Score = 28.1 bits (63), Expect = 3.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEE 181
G VL+ GG+SGIG + + GA V+ SE
Sbjct: 10 DGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEA 46
>gnl|CDD|161840 TIGR00362, DnaA, chromosomal replication initiator protein DnaA.
DnaA is involved in DNA biosynthesis; initiation of
chromosome replication and can also be transcription
regulator. The C-terminal of the family hits the pfam
bacterial DnaA (bac_dnaA) domain family. For a review,
see Kaguni (2006).
Length = 405
Score = 28.3 bits (64), Expect = 3.3
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 20/83 (24%)
Query: 199 KEDFLEILQKETQGRGIDIILDMVGAEYLNQHLT-----LLSKEGKLI----IISFLGGN 249
E L ILQK+ + G+++ ++ E++ +++ L EG L S G
Sbjct: 270 LETRLAILQKKAEEEGLELPDEV--LEFIAKNIRSNVREL---EGALNRLLAYASLTGKP 324
Query: 250 IATEIN---LNPIIS---KRITI 266
I E+ L ++ K ITI
Sbjct: 325 ITLELAKEALKDLLRAKKKEITI 347
>gnl|CDD|181073 PRK07666, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 239
Score = 28.1 bits (63), Expect = 3.4
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Query: 146 GQTVLIHGGSSGIG-TTAIQLASYFGATVYTTAKSEEK 182
G+ LI G GIG AI LA G V A++EE
Sbjct: 7 GKNALITGAGRGIGRAVAIALAKE-GVNVGLLARTEEN 43
>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional.
Length = 255
Score = 28.1 bits (63), Expect = 3.4
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHA 194
SG+ ++ GG+SGIG +L + GA V +SE+ +L +A
Sbjct: 14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNA 63
>gnl|CDD|180440 PRK06172, PRK06172, short chain dehydrogenase; Provisional.
Length = 253
Score = 27.8 bits (62), Expect = 3.7
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLA 166
SG+ L+ GG++GIG TA+ A
Sbjct: 6 SGKVALVTGGAAGIGRATALAFA 28
>gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein;
Provisional.
Length = 235
Score = 27.7 bits (62), Expect = 3.8
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 149 VLIHGGSSGIGTTAIQ--LASYFGATVYTT 176
+LI GGS GIG ++ L Y ATV+ T
Sbjct: 3 ILIVGGSGGIGKAMVKQLLERYPDATVHAT 32
>gnl|CDD|180133 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 247
Score = 27.9 bits (63), Expect = 3.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 145 SGQTVLIHGGSSGIGT-TAIQLASYFGATVY 174
G+ ++ G S GIG A LA GA V
Sbjct: 4 MGKVAIVTGASGGIGRAIAELLAKE-GAKVV 33
>gnl|CDD|168417 PRK06139, PRK06139, short chain dehydrogenase; Provisional.
Length = 330
Score = 27.8 bits (62), Expect = 4.4
Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 140 TANLRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLA----CLKLGA 191
L G V+I G SSGIG + + GA + A+ EE A C LGA
Sbjct: 2 MGPLH-GAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA 56
>gnl|CDD|169556 PRK08703, PRK08703, short chain dehydrogenase; Provisional.
Length = 239
Score = 27.6 bits (61), Expect = 4.5
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEK 182
S +T+L+ G S G+G + + GATV A+ ++K
Sbjct: 5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKK 42
>gnl|CDD|180292 PRK05855, PRK05855, short chain dehydrogenase; Validated.
Length = 582
Score = 27.6 bits (62), Expect = 4.5
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATV 173
SG+ V++ G SGIG TA+ A GA V
Sbjct: 314 SGKLVVVTGAGSGIGRETALAFARE-GAEV 342
>gnl|CDD|171820 PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase
NodG; Reviewed.
Length = 245
Score = 27.6 bits (61), Expect = 4.8
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 16/136 (11%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLA-CLKLGAKHAI---NYLKE 200
SG+ L+ G S GIG +L GA V EK A +LG + I N
Sbjct: 5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDR 64
Query: 201 DFLEIL--QKETQGRGIDIILDMVGAEYLNQHLTLLSKEGKLIIISFLGGNIATEINLNP 258
D ++ L + E G+DI+++ G ++K+G + +S + E+NL
Sbjct: 65 DEVKALGQKAEADLEGVDILVNNAG----------ITKDGLFVRMSDEDWDSVLEVNLTA 114
Query: 259 IISKRITITGSTLRRR 274
+T +RRR
Sbjct: 115 TFRLTRELTHPMMRRR 130
>gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 95
Score = 27.6 bits (62), Expect = 5.0
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 12/95 (12%)
Query: 156 SGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAINYLKEDFLEI-LQKETQGRG 214
G G LA GA V S E K + + ++ D ++ E+
Sbjct: 5 CGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLPFPDES---- 60
Query: 215 IDIILDMVGAEYLNQHLTLLS-------KEGKLII 242
D+++ + +L L GKL+I
Sbjct: 61 FDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 95
>gnl|CDD|181139 PRK07832, PRK07832, short chain dehydrogenase; Provisional.
Length = 272
Score = 27.3 bits (61), Expect = 5.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 149 VLIHGGSSGIG-TTAIQLASYFGATVYTT 176
+ G +SGIG TA++LA+ GA ++ T
Sbjct: 3 CFVTGAASGIGRATALRLAAQ-GAELFLT 30
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 27.2 bits (60), Expect = 5.6
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 229 QHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITITGSTLRRRTDIAKQSIRDSL-Q 287
Q T+ S E I + N T+ NP K T RR TD + IRD + Q
Sbjct: 119 QKTTVSSSEEVQISARDIQLNHKTQ--FNPPTVKHEKNTRVQPRRATDEKVKEIRDKIIQ 176
Query: 288 LKIW-----PLLNSHVI 299
K + P NS ++
Sbjct: 177 AKAYLNLAPPGSNSQLV 193
>gnl|CDD|180983 PRK07453, PRK07453, protochlorophyllide oxidoreductase; Validated.
Length = 322
Score = 27.3 bits (61), Expect = 5.7
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 147 QTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEK 182
TV+I G SSG+G A + + G V ++ +K
Sbjct: 7 GTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKK 42
>gnl|CDD|180930 PRK07326, PRK07326, short chain dehydrogenase; Provisional.
Length = 237
Score = 27.3 bits (61), Expect = 5.8
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 145 SGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEE 181
G+ LI GGS GIG + G V TA+ ++
Sbjct: 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQK 41
>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.
Length = 551
Score = 27.0 bits (60), Expect = 6.1
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 200 EDFLEILQKETQGRGIDIILDMVGAEYLNQH 230
+DF + L + + RGI IILDMV QH
Sbjct: 81 DDF-DELVAQAKSRGIRIILDMVFNHTSTQH 110
>gnl|CDD|181229 PRK08099, PRK08099, bifunctional DNA-binding transcriptional
repressor/ NMN adenylyltransferase; Provisional.
Length = 399
Score = 26.9 bits (60), Expect = 6.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 147 QTVLIHGG-SSGIGTTAIQLASYFGATV 173
+TV I GG SSG T +LA+ F T
Sbjct: 220 RTVAILGGESSGKSTLVNKLANIFNTTS 247
>gnl|CDD|181389 PRK08324, PRK08324, short chain dehydrogenase; Validated.
Length = 681
Score = 26.7 bits (60), Expect = 7.5
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 145 SGQTVLIHGGSSGIG-TTAIQLASYFGATV 173
+G+ L+ G + GIG TA +LA+ GA V
Sbjct: 421 AGKVALVTGAAGGIGKATAKRLAAE-GACV 449
>gnl|CDD|183774 PRK12825, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 249
Score = 26.8 bits (60), Expect = 7.7
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 145 SGQTVLIHGGSSGIGT-TAIQLASYFGATVYTTAKSEEKCLACLK 188
G+ L+ G + G+G A++LA GA V +S+E+ L
Sbjct: 5 MGRVALVTGAARGLGRAIALRLARA-GADVVVHYRSDEEAAEELV 48
>gnl|CDD|177895 PLN02253, PLN02253, xanthoxin dehydrogenase.
Length = 280
Score = 26.7 bits (59), Expect = 7.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 146 GQTVLIHGGSSGIGTTAIQLASYFGATV 173
G+ L+ GG++GIG + ++L GA V
Sbjct: 18 GKVALVTGGATGIGESIVRLFHKHGAKV 45
>gnl|CDD|178242 PLN02635, PLN02635, disproportionating enzyme.
Length = 538
Score = 26.6 bits (59), Expect = 8.4
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 206 LQKETQGRGIDIILDM---VGAE----YLNQHLTLLSKEGKLIIIS 244
++ +GI II DM VG + N+ L LL+K G +++S
Sbjct: 229 VRSYANEKGISIIGDMPIYVGGHSADVWANRKLFLLNKTGFPLLVS 274
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 26.6 bits (59), Expect = 9.0
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
Query: 219 LDMVGAEYLNQHLTLLSKEGKLIIISFLGGNIATEINLNPIISKRITI 266
LD +GA + + L L+KEG IIIS +++L P+ + ++ +
Sbjct: 168 LDPMGASQIMKLLYDLNKEGITIIIS------THDVDLVPVYADKVYV 209
>gnl|CDD|180446 PRK06180, PRK06180, short chain dehydrogenase; Provisional.
Length = 277
Score = 26.4 bits (59), Expect = 9.5
Identities = 18/53 (33%), Positives = 22/53 (41%)
Query: 143 LRSGQTVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAKHAI 195
+ S +T LI G SSG G Q A G V T +SE L A+
Sbjct: 1 MSSMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRAL 53
>gnl|CDD|180774 PRK06953, PRK06953, short chain dehydrogenase; Provisional.
Length = 222
Score = 26.6 bits (59), Expect = 9.7
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 148 TVLIHGGSSGIGTTAIQLASYFGATVYTTAKSEEKCLACLKLGAK 192
TVLI G S GIG ++ G V TA+ A LGA+
Sbjct: 3 TVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALGAE 47
>gnl|CDD|178749 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 26.4 bits (58), Expect = 10.0
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 32/100 (32%)
Query: 154 GSSGIGTTAI------QLASYFGATVYT----TAKSEEKCLAC------LKLGAKHAINY 197
GSSGIG T I +L+ F ++V+ +KS E + +KL +
Sbjct: 214 GSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKL-------H 266
Query: 198 LKEDFL-EILQKETQGRGIDIILDMVGA--EYLNQHLTLL 234
L+ FL EIL K+ DI + +GA E L L+
Sbjct: 267 LQRAFLSEILDKK------DIKIYHLGAMEERLKHRKVLI 300
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.137 0.402
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,409,384
Number of extensions: 349498
Number of successful extensions: 860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 831
Number of HSP's successfully gapped: 113
Length of query: 332
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 238
Effective length of database: 3,963,321
Effective search space: 943270398
Effective search space used: 943270398
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)