Query         gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 475
No_of_seqs    13 out of 15
Neff          2.2 
Searched_HMMs 23785
Date          Tue May 24 15:04:11 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780291.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2nxf_A Putative dimetal phosph  99.4   9E-12 3.8E-16   96.1  13.2  254  161-455     7-314 (322)
  2 3ib7_A ICC protein; metallopho  99.2 1.1E-09 4.8E-14   82.2  13.4  197  177-456    53-280 (330)
  3 1ute_A Protein (II purple acid  99.2   3E-10 1.3E-14   86.0  10.4  236  162-457     9-293 (313)
  4 2qfp_A Purple acid phosphatase  99.1 2.4E-09   1E-13   80.0  13.0  159  185-409   143-317 (424)
  5 1xzw_A Purple acid phosphatase  99.1 6.3E-09 2.6E-13   77.3  14.8  180  162-410   129-325 (426)
  6 3d03_A Phosphohydrolase; glyce  99.0 3.7E-09 1.6E-13   78.8  11.2  177  177-432    28-215 (274)
  7 2yvt_A Hypothetical protein AQ  98.5 1.7E-06   7E-11   61.3  11.6  217  160-452     6-259 (260)
  8 1uf3_A Hypothetical protein TT  98.5 6.6E-06 2.8E-10   57.4  13.2  216  160-450     6-225 (228)
  9 1ii7_A MRE11 nuclease; RAD50,   97.3 0.00016 6.7E-09   48.2   3.5   68  168-235    19-92  (333)
 10 2q8u_A Exonuclease, putative;   97.1   0.002 8.4E-08   41.0   7.8  196  177-445    49-269 (336)
 11 2a22_A Vacuolar protein sortin  85.3     1.8 7.6E-05   21.5   7.4   63  391-458   133-205 (215)
 12 1z2w_A Vacuolar protein sortin  84.6     1.9 8.1E-05   21.3   6.7   61  392-457   110-180 (192)
 13 1su1_A Hypothetical protein YF  81.9     2.5  0.0001   20.6   5.5   66  162-230    28-100 (208)
 14 2kkn_A Uncharacterized protein  74.4     3.2 0.00014   19.9   4.1   50  397-451   126-175 (178)
 15 1nnw_A Hypothetical protein; s  64.9     6.4 0.00027   17.9   5.0   47  398-449   166-219 (252)
 16 3ck2_A Conserved uncharacteriz  58.4     8.3 0.00035   17.1   7.0   57  394-455   100-163 (176)
 17 1v77_A PH1877P, hypothetical p  55.7     7.2  0.0003   17.6   2.9   80  157-240    93-179 (212)
 18 1s3l_A Hypothetical protein MJ  47.0      13 0.00053   15.9   4.8   60  162-230    28-87  (190)
 19 1wb9_A DNA mismatch repair pro  37.4      18 0.00074   15.0   3.5   53  358-413   677-734 (800)
 20 1wgo_A VPS10 domain-containing  37.1     8.9 0.00037   16.9   1.0   13  298-310    61-73  (123)
 21 3f9u_A Putative exported cytoc  35.6      10 0.00042   16.6   1.0   22  357-378    35-56  (172)
 22 2o8b_B DNA mismatch repair pro  32.7      21 0.00087   14.5   4.3   70  357-432   858-932 (1022)
 23 3fk8_A Disulphide isomerase; A  32.5      19 0.00078   14.8   2.0   30  352-381    12-43  (133)
 24 2kzw_A Uncharacterized protein  29.7      16 0.00067   15.3   1.3   14  296-309    86-99  (145)
 25 3jqu_A Collagenase; PKD, beta   26.7      25  0.0011   13.9   1.8   12  299-310    35-46  (87)
 26 1qwz_A NPQTN specific sortase   26.5      18 0.00074   15.0   1.0   18  216-233    72-89  (235)
 27 1egz_A Endoglucanase Z, EGZ, C  23.9      29  0.0012   13.5   4.9   51  356-406   200-255 (291)
 28 2o8b_A DNA mismatch repair pro  23.8      30  0.0012   13.5   4.8   54  357-413   731-789 (934)
 29 2w70_A Biotin carboxylase; lig  22.3      32  0.0013   13.3   1.9   65  155-223    93-158 (449)
 30 3mx1_A ECO29KIR; type II restr  22.2      26  0.0011   13.9   1.2   53  179-234   128-190 (235)
 31 1sen_A Thioredoxin-like protei  22.0      27  0.0011   13.8   1.2   21  357-378    35-55  (164)
 32 1w9c_A CRM1 protein, exportin   21.6      16 0.00069   15.2   0.1   17  349-365   263-279 (321)
 33 1b4r_A Protein (PKD1_human); P  21.6      26  0.0011   13.9   1.1   12  297-308    25-36  (80)
 34 1t71_A Phosphatase, conserved;  21.4      33  0.0014   13.2   2.5   70  163-233     8-77  (281)
 35 1jni_A NAPB;, diheme cytochrom  21.4      10 0.00044   16.5  -1.0   26  138-163    40-66  (123)
 36 1ogy_B Diheme cytochrome C NAP  20.4      13 0.00055   15.8  -0.6   26  138-163    41-67  (130)

No 1  
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=99.39  E-value=9e-12  Score=96.06  Aligned_cols=254  Identities=12%  Similarity=0.111  Sum_probs=132.1

Q ss_pred             CEEEEECCCEE-CC----------------CHHHHHHHHHHHHCCCEEEEEEECCCCCC------CCHHHHHHHHHHH-C
Q ss_conf             51555133100-46----------------31468899988611656789760510012------1267788888672-6
Q gi|254780291|r  161 GIAVIADPWYK-AD----------------TPMFVEAINSLKSSKNIILGILTGDMTQS------STTKELKRFYNIY-S  216 (475)
Q Consensus       161 ~~~~~~~pw~k-~~----------------~~~~vesinsl~~~~~~~~gIINGDLTeF------G~q~qL~eFr~Vw-n  216 (475)
                      -++||+||-|. .+                ...+.++|..+. ..++.|-|++|||++-      +...+++++...+ +
T Consensus         7 ~f~~isD~h~~~~~~~~~~~~~~~~~~~~s~~~l~~ai~~~~-~~~~dfVv~~GDl~d~~~~~~~~~~~~~~~~~~~~~~   85 (322)
T 2nxf_A            7 TFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWR-RERVQCVVQLGDIIDGHNRRRDASDRALDTVMAELDA   85 (322)
T ss_dssp             EEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHH-HTTCSEEEECSCCBCTHHHHTTCHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             999983178777776523344303456666999999999973-3799999999987889885236899999999999986


Q ss_pred             CCCCEEECCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEE
Q ss_conf             55751302455444788-87667454550000036888999999998776555666542100100134445655210377
Q gi|254780291|r  217 LKFPFFRGLGSQEYIGN-RPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISI  295 (475)
Q Consensus       217 l~iPv~lGLGNHDYqNN-~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei  295 (475)
                      +++|++...||||+... .++........            +..+..+..          ......              
T Consensus        86 ~~~p~~~~~GNHD~~~~~~~~~~~~~~~~------------~~~~~~~~~----------~~~~~~--------------  129 (322)
T 2nxf_A           86 CSVDVHHVWGNHEFYNFSRPSLLSSRLNS------------AQRTGTDTG----------SDLIGD--------------  129 (322)
T ss_dssp             TCSEEEECCCHHHHHHCCHHHHHTSTTCC------------CC------C----------EECGGG--------------
T ss_pred             CCCCEEEECCCCCCCCCCCHHHCCCCCCC------------HHHHCCCCC----------CCCCCC--------------
T ss_conf             59978982687752223300000012341------------222112233----------222577--------------


Q ss_pred             EEEEEEEEECCCEEEEEECCCCEEEEECCCCCC-----HHHHHHHHHCCCCCCEE--------EEEE----CCCCHHHHH
Q ss_conf             754433430273355540364103675167530-----01222210002565113--------4320----565577887
Q gi|254780291|r  296 SGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWS-----NIFTVAVPEHISKQDLP--------SHVS----NGSEISQWI  358 (475)
Q Consensus       296 ~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~-----~af~Iqv~n~Id~q~l~--------s~Vn----~~~~iskWL  358 (475)
                      .+...+.-..++.+++-++-..+..........     -.+.......+.....+        ....    ....-..||
T Consensus       130 ~~~~~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~wl  209 (322)
T 2nxf_A          130 DIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQHNHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWL  209 (322)
T ss_dssp             TCCCEEEEEETTEEEEECCTTSBCSSSSCTTSHHHHHHHHHHHHHCCCTTCTTSCSCSSSGGGGCSTTCCBCCHHHHHHH
T ss_pred             CCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCHHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             87404764179769999657543444566565210011000012466621003553223555554444556889999999


Q ss_pred             HHHHHHCCCCCCEEEEECCCCCCC------HHHHHHHHHHHHHHHC-CCCEEEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf             888884034795799950047720------0389999999999858-961799986423676524655531013897045
Q gi|254780291|r  359 RDDVFQAQREGKYIILFADDIDRF------SSIDQKRMFEKFLTQS-KISTIFTTRFTSSPESYIKDSTGRPVRVYNINK  431 (475)
Q Consensus       359 ~~DL~~A~~~gK~IILN~HD~~~~------sSi~~KrmFks~itk~-nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGS  431 (475)
                      ++.|..+++.++++|+.+|.-...      .....-..+..++.++ +|.++|.||.|...  +...+.|  ++++..++
T Consensus       210 ~~~L~~~~~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~l~~~~~V~~v~~GH~H~~~--~~~~~~g--i~~v~~~~  285 (322)
T 2nxf_A          210 DAVLTLSDHKQERVLIFSHLPVHPCAADPICLAWNHEAVLSVLRSHQSVLCFIAGHDHDGG--RCTDSSG--AQHITLEG  285 (322)
T ss_dssp             HHHHHHHHHHTCEEEEEESSCCCTTSSCGGGSCTTHHHHHHHHHTCTTEEEEEECSCTTCE--EEECTTS--CEEEECCC
T ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCC--EEECCCC--CEEEECCE
T ss_conf             9999862642874899992189777788763113499999999748984699947747886--3344489--76997780


Q ss_pred             CCC-----CCEEEEEECCCEEEEEEEECC
Q ss_conf             646-----718999964885999998516
Q gi|254780291|r  432 NSK-----NEFILLEMTPHYINVTAYERR  455 (475)
Q Consensus       432 vpk-----NrF~~lem~~~~atITgY~~R  455 (475)
                      +..     +.|..+|+.+-.++|+||-+-
T Consensus       286 ~~~~~~~~~~~~~~~~~~d~~~i~~~~~~  314 (322)
T 2nxf_A          286 VIETPPHSHAFATAYLYEDRMVMKGRGRV  314 (322)
T ss_dssp             GGGCCTTSCEEEEEEECSSEEEEEEEETS
T ss_pred             ECCCCCCCCCEEEEEEECCEEEEEEEEEE
T ss_conf             20268999988999998999999989876


No 2  
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=99.15  E-value=1.1e-09  Score=82.20  Aligned_cols=197  Identities=11%  Similarity=0.135  Sum_probs=123.3

Q ss_pred             HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHH-----CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             6889998861-16567897605100121267788888672-----65575130245544478887667454550000036
Q gi|254780291|r  177 FVEAINSLKS-SKNIILGILTGDMTQSSTTKELKRFYNIY-----SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCA  250 (475)
Q Consensus       177 ~vesinsl~~-~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-----nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA  250 (475)
                      |.+.+..+.+ ..+.-+-|++||||+.|...++++|++..     .+++|++.=.||||+..+                 
T Consensus        53 l~~~l~~i~~~~~~pD~vvitGDl~~~g~~~~y~~~~~~l~~~~~~~~~pv~~v~GNHD~~~~-----------------  115 (330)
T 3ib7_A           53 LGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRAE-----------------  115 (330)
T ss_dssp             HHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCCTTSCHHH-----------------
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHH-----------------
T ss_conf             999999998229899999989877899999999999999999875249977995787764455-----------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHH
Q ss_conf             88899999999877655566654210010013444565521037775443343027335554036410367516753001
Q gi|254780291|r  251 FIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI  330 (475)
Q Consensus       251 ~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~a  330 (475)
                            |-++..++                ..            -.+...|..++++.+++.++-..+..   ..+..  
T Consensus       116 ------~~~~~~~~----------------~~------------~~~~~~~~~~~~~~~~~~ldt~~~~~---~~G~~--  156 (330)
T 3ib7_A          116 ------LRKFLLDE----------------AP------------SMAPLDRVCMIDGLRIIVLDTSVPGH---HHGEI--  156 (330)
T ss_dssp             ------HHHHHHCC----------------CC------------CCSCCCEEEEETTEEEEECCCCCTTC---CSBCC--
T ss_pred             ------HHHHHCCC----------------CC------------CCCCCEEEEEECCCEEEECCCCCCCC---CCCCC--
T ss_conf             ------54431013----------------66------------66763047870783266436666787---68855--


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCC------HHH--HHHHHHHHHHHHCCCCE
Q ss_conf             2222100025651134320565577887888884034795799950047720------038--99999999998589617
Q gi|254780291|r  331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRF------SSI--DQKRMFEKFLTQSKIST  402 (475)
Q Consensus       331 f~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~~------sSi--~~KrmFks~itk~nV~A  402 (475)
                                          ..+--+||++.|.++  .++++|+.+|-.+..      .++  .....|..++++++|.+
T Consensus       157 --------------------~~~ql~wL~~~L~~~--~~~~~iv~~HHpp~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~  214 (330)
T 3ib7_A          157 --------------------RASQLGWLAEELATP--APDGTILALHHPPIPSVLDMAVTVELRDQAALGRVLRGTDVRA  214 (330)
T ss_dssp             --------------------CHHHHHHHHHHTTSC--CTTCEEEECSSCSSCCSSGGGGGGSBSCHHHHHHHHTTSSEEE
T ss_pred             --------------------CHHHHHHHHHHHHHC--CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf             --------------------999999999988647--7887699981698567775334433444799999997469819


Q ss_pred             EEEEEEECCCCCCCCCCCCCEEEEEEECCCC-----------------CCCEEEEEECCCEEEEEEEECCC
Q ss_conf             9998642367652465553101389704564-----------------67189999648859999985167
Q gi|254780291|r  403 IFTTRFTSSPESYIKDSTGRPVRVYNINKNS-----------------KNEFILLEMTPHYINVTAYERRG  456 (475)
Q Consensus       403 IF~aH~Hqshe~~lec~~GykVPvy~iGSvp-----------------kNrF~~lem~~~~atITgY~~Rd  456 (475)
                      ||.||.|.......     ..+|++..+|..                 ..-|..+++....+..+.+-..+
T Consensus       215 vl~GH~H~~~~~~~-----~Gi~~~~~pst~~~~~~~~~~~~~~~~~~~~g~~~i~~~~d~~v~~~vp~~~  280 (330)
T 3ib7_A          215 ILAGHLHYSTNATF-----VGIPVSVASATCYTQDLTVAAGGTRGRDGAQGCNLVHVYPDTVVHSVIPLGG  280 (330)
T ss_dssp             EEECSSSSCEEEEE-----TTEEEEECCCSSCEECTTSCTTCCCEESCSCEEEEEEECSSCEEEEEEECSC
T ss_pred             EEECCCCCCCEEEE-----CCEEEEEECCCHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCC
T ss_conf             99777880493799-----9999999696253266777888755556899759999959977999997289


No 3  
>1ute_A Protein (II purple acid phosphatase); tartrate resistant acid phosphatase, metalloenzyme, uteroferrin, hydrolase; HET: NAG; 1.55A {Sus scrofa} SCOP: d.159.1.1 PDB: 1war_A* 2bq8_X 1qfc_A* 1qhw_A*
Probab=99.15  E-value=3e-10  Score=85.99  Aligned_cols=236  Identities=17%  Similarity=0.167  Sum_probs=123.1

Q ss_pred             EEEEEC----CCEECCCHH---HHHHHHHHHHCCCEEEEEEECCCC-CCCCHHHH-HHHHHHH--------CCCCCEEEC
Q ss_conf             155513----310046314---688999886116567897605100-12126778-8888672--------655751302
Q gi|254780291|r  162 IAVIAD----PWYKADTPM---FVEAINSLKSSKNIILGILTGDMT-QSSTTKEL-KRFYNIY--------SLKFPFFRG  224 (475)
Q Consensus       162 ~~~~~~----pw~k~~~~~---~vesinsl~~~~~~~~gIINGDLT-eFG~q~qL-~eFr~Vw--------nl~iPv~lG  224 (475)
                      ++|++|    +.....++.   ..++++......+..|-|..||+. +.|...+. .+|.+.|        ...+|+|.-
T Consensus         9 f~v~gD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~pdfvl~~GD~~y~~g~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~   88 (313)
T 1ute_A            9 FVAVGDWGGVPNAPFHTAREMANAKAIATTVKTLGADFILSLGDNFYFTGVHDAKDKRFQETFEDVFSDPSLRNVPWHVL   88 (313)
T ss_dssp             EEEECSCCCCSSTTSSCHHHHHHHHHHHHHHHHHCCSEEEECSCCSTTTCCSSTTCTHHHHHTTTTSCSGGGTTCCEEEC
T ss_pred             EEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             99994699999754451789999999999986369989998998877788875217999999998753356518987984


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEE
Q ss_conf             455444788-8766745455000003688899999999877655566654210010013444565521037775443343
Q gi|254780291|r  225 LGSQEYIGN-RPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSW  303 (475)
Q Consensus       225 LGNHDYqNN-~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSW  303 (475)
                      +|||||.+| ..+.                         .+. .  ....++....                .++..|.-
T Consensus        89 ~GNHd~~~~~~~~~-------------------------~~~-~--~~~~~~~~~~----------------~y~~~~~~  124 (313)
T 1ute_A           89 AGNHDHLGNVSAQI-------------------------AYS-K--ISKRWNFPSP----------------YYRLRFKI  124 (313)
T ss_dssp             CCHHHHHSCHHHHH-------------------------HGG-G--TSTTEECCSS----------------SEEEEEEC
T ss_pred             CCCCCCCCCCCCCC-------------------------CHH-H--CCCCCCCCCC----------------CCCEECCC
T ss_conf             47656667632220-------------------------112-1--1545568887----------------64401046


Q ss_pred             EC--CCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC-CCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCC
Q ss_conf             02--733555403641036751675300122221000256-511343205655778878888840347957999500477
Q gi|254780291|r  304 NI--DNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISK-QDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDID  380 (475)
Q Consensus       304 d~--gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~-q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~  380 (475)
                      ..  +++.++.+++..|....             ...... ...+.......+-.+||+++|...  ..+.+++.+|.-.
T Consensus       125 ~~~~~~~~~~~~d~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~Q~~WL~~~L~~~--~~~~~iv~~hhp~  189 (313)
T 1ute_A          125 PRSNVSVAIFMLDTVTLCGNS-------------DDFVSQQPERPRNLALARTQLAWIKKQLAAA--KEDYVLVAGHYPV  189 (313)
T ss_dssp             TTSSCEEEEEECCHHHHHCCG-------------GGSTTCSCCSCSCHHHHHHHHHHHHHHHHHC--CCSEEEEECSSCS
T ss_pred             CCCCCCEEEEECCCEEEEECC-------------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCCEEEEEECCC
T ss_conf             788970699981555687303-------------4444456666434223999999999999726--3567389982376


Q ss_pred             -----CCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC-----------------------CCCCEEEEEEECCC
Q ss_conf             -----20038999999999985896179998642367652465-----------------------55310138970456
Q gi|254780291|r  381 -----RFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKD-----------------------STGRPVRVYNINKN  432 (475)
Q Consensus       381 -----~~sSi~~KrmFks~itk~nV~AIF~aH~Hqshe~~lec-----------------------~~GykVPvy~iGSv  432 (475)
                           ...+-.....|..++.+++|.++|.||.|. ++++...                       .-.+.+++......
T Consensus       190 ~~~~~~~~~~~~~~~~~~ll~~~~V~~~~~GH~H~-~~~~~~~~~~~~~~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~  268 (313)
T 1ute_A          190 WSIAEHGPTHCLVKQLLPLLTTHKVTAYLCGHDHN-LQYLQDENGLGFVLSGAGNFMDPSKKHLRKVPNGYLRFHFGAEN  268 (313)
T ss_dssp             SCCSSSCCCHHHHHHTHHHHHHTTCSEEEECSSSS-EEEEECTTCCEEEEECBSSCCCCCCTTGGGSCTTCEEEEECCTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCC-EEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEECCCC
T ss_conf             44466787477889999999976944999588642-16774489978999698856678876566687533432350467


Q ss_pred             CCCCEEEEEECCCEEEEEEEECCCC
Q ss_conf             4671899996488599999851676
Q gi|254780291|r  433 SKNEFILLEMTPHYINVTAYERRGK  457 (475)
Q Consensus       433 pkNrF~~lem~~~~atITgY~~Rd~  457 (475)
                      ...-|..+++++.+++++.|..-+.
T Consensus       269 ~~~gf~~i~v~~~~l~~~~~~~~G~  293 (313)
T 1ute_A          269 SLGGFAYVEITPKEMSVTYIEASGK  293 (313)
T ss_dssp             SCCEEEEEEECSSCEEEEEEETTSC
T ss_pred             CCCEEEEEEEECCEEEEEEECCCCC
T ss_conf             8663999999899999999949998


No 4  
>2qfp_A Purple acid phosphatase; binuclear, Fe-Zn, hydrolase; HET: NAG NDG; 2.20A {Phaseolus vulgaris} SCOP: b.1.12.1 d.159.1.1 PDB: 2qfr_A* 1kbp_A* 3kbp_A* 4kbp_A*
Probab=99.10  E-value=2.4e-09  Score=80.02  Aligned_cols=159  Identities=12%  Similarity=0.183  Sum_probs=96.3

Q ss_pred             HHCCCEEEEEEECCCCC-----CCCHHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             61165678976051001-----21267788888672---65575130245544478887667454550000036888999
Q gi|254780291|r  185 KSSKNIILGILTGDMTQ-----SSTTKELKRFYNIY---SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAIND  256 (475)
Q Consensus       185 ~~~~~~~~gIINGDLTe-----FG~q~qL~eFr~Vw---nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav~~  256 (475)
                      ....+..|-+..||+..     ...+.+.++|.+..   .-.+|++..+|||||..+..-...+.+      -       
T Consensus       143 ~~~~~pdfvl~~GD~~y~d~~~~~~~~~wd~~~~~~~~~~~~iP~~~~~GNHE~~~~~~~~~~~~~------~-------  209 (424)
T 2qfp_A          143 LSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPF------K-------  209 (424)
T ss_dssp             TCSSCCCEEEECSCCSCGGGSGGGCTHHHHHHHHHHHHHHTTSCEEECCCHHHHCCBGGGTBCSTT------H-------
T ss_pred             HCCCCCCEEEEECCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCCCC------E-------
T ss_conf             655687659980437650555663036888999888788722965870676532257655667464------0-------


Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHH
Q ss_conf             99999877655566654210010013444565521037775443343027335554036410367516753001222210
Q gi|254780291|r  257 ISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVP  336 (475)
Q Consensus       257 M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~  336 (475)
                            .|...      |+.-.     +..       .-.+..-||.++|++||+.++--..    +..           
T Consensus       210 ------~~~~~------f~~p~-----~~~-------~~~~~~yYsfd~G~v~fi~lds~~~----~~~-----------  250 (424)
T 2qfp_A          210 ------PFSYR------YHVPY-----EAS-------QSTSPFWYSIKRASAHIIVLSSYSA----YGR-----------  250 (424)
T ss_dssp             ------HHHHH------CCCCG-----GGG-------TCSSTTSEEEEETTEEEEECCTTSC----CST-----------
T ss_pred             ------EEECC------CCCCC-----CCC-------CCCCCCEEEEEECCEEEEECCCCCC----CCC-----------
T ss_conf             ------44211------35776-----666-------7888756999878888996147446----775-----------


Q ss_pred             HCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC-EEEEECCCC---CCC----HHHHHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             0025651134320565577887888884034795-799950047---720----03899999999998589617999864
Q gi|254780291|r  337 EHISKQDLPSHVSNGSEISQWIRDDVFQAQREGK-YIILFADDI---DRF----SSIDQKRMFEKFLTQSKISTIFTTRF  408 (475)
Q Consensus       337 n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK-~IILN~HD~---~~~----sSi~~KrmFks~itk~nV~AIF~aH~  408 (475)
                                    +.+--+||++||.++++... -+|+.+|.-   ..-    .....+..|+.++.+++|..||.||.
T Consensus       251 --------------~~~Q~~WL~~dL~~~~r~~~~w~iv~~H~P~ys~~~~~~~~~~~~r~~~~~lf~ky~Vdlvl~GH~  316 (424)
T 2qfp_A          251 --------------GTPQYTWLKKELRKVKRSETPWLIVLMHSPLYNSYNHHFMEGEAMRTKFEAWFVKYKVDVVFAGHV  316 (424)
T ss_dssp             --------------TSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTTHHHHHHHHHHHHHTTCSEEEECSS
T ss_pred             --------------CCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf             --------------459999999998753125798699996888654587887666789999999999719759996985


Q ss_pred             E
Q ss_conf             2
Q gi|254780291|r  409 T  409 (475)
Q Consensus       409 H  409 (475)
                      |
T Consensus       317 H  317 (424)
T 2qfp_A          317 H  317 (424)
T ss_dssp             S
T ss_pred             C
T ss_conf             6


No 5  
>1xzw_A Purple acid phosphatase; hydrolase; HET: NAG FUC MAN; 2.50A {Ipomoea batatas} SCOP: b.1.12.1 d.159.1.1
Probab=99.09  E-value=6.3e-09  Score=77.32  Aligned_cols=180  Identities=13%  Similarity=0.175  Sum_probs=102.6

Q ss_pred             EEEEECCCEECCCHHHHHHHHHH-HHCCCEEEEEEECCCCCC-C----CHHHHHHHHHHH---CCCCCEEECCCCCCCCC
Q ss_conf             15551331004631468899988-611656789760510012-1----267788888672---65575130245544478
Q gi|254780291|r  162 IAVIADPWYKADTPMFVEAINSL-KSSKNIILGILTGDMTQS-S----TTKELKRFYNIY---SLKFPFFRGLGSQEYIG  232 (475)
Q Consensus       162 ~~~~~~pw~k~~~~~~vesinsl-~~~~~~~~gIINGDLTeF-G----~q~qL~eFr~Vw---nl~iPv~lGLGNHDYqN  232 (475)
                      +++++|.=...+.   ...+..+ ....+..|-|..||+.-- |    .+.+.++|.+..   .-.+|++..+|||||.+
T Consensus       129 f~~~GD~G~~~~~---~~~~~~~~~~~~~~dfvl~~GD~~Y~~~~~~~~~~~wd~~~~~~~~~~~~~P~~~~~GNHE~~~  205 (426)
T 1xzw_A          129 FGLIGDIGQTHDS---NTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNHDNNRWDTWGRFSERSVAYQPWIWTAGNHEIDY  205 (426)
T ss_dssp             EEEECSCTTBHHH---HHHHHHHHHCTTCCSEEEECSCCCCGGGSGGGCTHHHHHHHHHHHHHHTTSCEECCCCGGGCCC
T ss_pred             EEEECCCCCCCCH---HHHHHHHHHCCCCCCEEEECCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf             5364787888620---4899999870778758996577430464544215788899877677860496698347545566


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEE
Q ss_conf             88766745455000003688899999999877655566654210010013444565521037775443343027335554
Q gi|254780291|r  233 NRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQ  312 (475)
Q Consensus       233 N~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ  312 (475)
                      +.+-..         ...+.          .|...      |.....    ...        -...+-||.++|++||+.
T Consensus       206 ~~~~~~---------~~~~~----------~~~~~------f~~~~~----~~~--------~~~~~~Ysf~~g~v~fi~  248 (426)
T 1xzw_A          206 APDIGE---------YQPFV----------PFTNR------YPTPHE----ASG--------SGDPLWYAIKRASAHIIV  248 (426)
T ss_dssp             BGGGTB---------CSTTH----------HHHHH------SCCCCG----GGT--------CSSTTSEEEEETTEEEEE
T ss_pred             CCCCCC---------CCCCC----------CHHHC------CCCCCC----CCC--------CCCCCEEEEECCEEEEEE
T ss_conf             666555---------44365----------27761------888644----567--------888855999817289999


Q ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCC-EEEEECCCCC--C-----CHH
Q ss_conf             0364103675167530012222100025651134320565577887888884034795-7999500477--2-----003
Q gi|254780291|r  313 ANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGK-YIILFADDID--R-----FSS  384 (475)
Q Consensus       313 ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK-~IILN~HD~~--~-----~sS  384 (475)
                      +|--....                             ...+--+||++||..+++... -+|+.+|.-.  .     ...
T Consensus       249 lds~~~~~-----------------------------~~~~Q~~WL~~~L~~~~~~~~~w~iv~~H~P~y~s~~~~~~~~  299 (426)
T 1xzw_A          249 LSSYSGFV-----------------------------KYSPQYKWFTSELEKVNRSETPWLIVLVHAPLYNSYEAHYMEG  299 (426)
T ss_dssp             CCTTSCCS-----------------------------TTSHHHHHHHHHHHHCCTTTCCEEEEECSSCSSCCBSTTTTTT
T ss_pred             ECCCCCCC-----------------------------CCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCC
T ss_conf             54666876-----------------------------5049999999999975433797599981888643576666677


Q ss_pred             HHHHHHHHHHHHHCCCCEEEEEEEEC
Q ss_conf             89999999999858961799986423
Q gi|254780291|r  385 IDQKRMFEKFLTQSKISTIFTTRFTS  410 (475)
Q Consensus       385 i~~KrmFks~itk~nV~AIF~aH~Hq  410 (475)
                      ...+..|+.++.+++|..||.||.|.
T Consensus       300 ~~~r~~l~~lf~~y~Vdlvl~GH~H~  325 (426)
T 1xzw_A          300 EAMRAIFEPYFVYYKVDIVFSGHVHS  325 (426)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEECSSSS
T ss_pred             HHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf             88999999999981971999798556


No 6  
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=99.02  E-value=3.7e-09  Score=78.81  Aligned_cols=177  Identities=13%  Similarity=0.239  Sum_probs=103.8

Q ss_pred             HHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             6889998861-16567897605100121267788888672-655751302455444788876674545500000368889
Q gi|254780291|r  177 FVEAINSLKS-SKNIILGILTGDMTQSSTTKELKRFYNIY-SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAI  254 (475)
Q Consensus       177 ~vesinsl~~-~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav  254 (475)
                      +.+.++.+.. ..+.-+-|+.|||++.|...+++.|++.- .+++|++.=.||||+.++                     
T Consensus        28 l~~~~~~i~~~~~~~D~vv~tGDl~~~~~~~~y~~~~~~l~~l~~p~~~v~GNHD~~~~---------------------   86 (274)
T 3d03_A           28 NADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKAL---------------------   86 (274)
T ss_dssp             HHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSCHHH---------------------
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHH---------------------
T ss_conf             99999999832899999998875788998899999999998728878996788634678---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHH
Q ss_conf             99999998776555666542100100134445655210377754433430273355540364103675167530012222
Q gi|254780291|r  255 NDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVA  334 (475)
Q Consensus       255 ~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iq  334 (475)
                        +......+.++      +..+                  .+...|+-+.+.++|+-++...+..   ..++       
T Consensus        87 --~~~~~~~~~~~------~~~~------------------~~~~~~~~~~~~~~~i~ldt~~~~~---~~~~-------  130 (274)
T 3d03_A           87 --FLEYLQPLCPQ------LGSD------------------ANNMRCAVDDFATRLLFIDSSRAGT---SKGW-------  130 (274)
T ss_dssp             --HHHHHGGGSGG------GCSC------------------GGGCCEEECSSSSEEEECCCCCTTC---SSBC-------
T ss_pred             --HHHHHHHHCCC------CCCC------------------CCCEEEEEECCCEEEEECCCCCCCC---CCCC-------
T ss_conf             --89876543012------3567------------------7862699954875898425776788---7640-------


Q ss_pred             HHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCC------CH--HHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf             10002565113432056557788788888403479579995004772------00--389999999999858-9617999
Q gi|254780291|r  335 VPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDR------FS--SIDQKRMFEKFLTQS-KISTIFT  405 (475)
Q Consensus       335 v~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~------~s--Si~~KrmFks~itk~-nV~AIF~  405 (475)
                          +           .-+-.+||++.|..+..  +++++.+|-.+-      +.  ..+....|.+.+.++ +|.+||.
T Consensus       131 ----l-----------~~~~l~wL~~~L~~~~~--~~~iv~~Hhpp~~~~~~~~~~~~~~~~~~l~~~l~~~~~V~~vl~  193 (274)
T 3d03_A          131 ----L-----------TDETISWLEAQLFEGGD--KPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFC  193 (274)
T ss_dssp             ----C-----------CHHHHHHHHHHHHHHTT--SCEEEEESSCSSCCSCTTTGGGSBTTTHHHHHHHHHCTTEEEEEE
T ss_pred             ----C-----------CHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf             ----1-----------59999999999875106--634999943874678865454246689999999983799329998


Q ss_pred             EEEECCCCCCCCCCCCCEEEEEEECCC
Q ss_conf             864236765246555310138970456
Q gi|254780291|r  406 TRFTSSPESYIKDSTGRPVRVYNINKN  432 (475)
Q Consensus       406 aH~Hqshe~~lec~~GykVPvy~iGSv  432 (475)
                      ||.|.......     ..+|++...|.
T Consensus       194 GH~H~~~~~~~-----~gi~~~~~pst  215 (274)
T 3d03_A          194 GHNHSLTMTQY-----RQALISTLPGT  215 (274)
T ss_dssp             CSSSSCEEEEE-----TTEEEEECCCS
T ss_pred             CCCCHHHHEEE-----CCEEEEECCCC
T ss_conf             85480350699-----99999984841


No 7  
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national project on protein structural and functional analyses; 1.60A {Aquifex aeolicus VF5} SCOP: d.159.1.6
Probab=98.52  E-value=1.7e-06  Score=61.31  Aligned_cols=217  Identities=10%  Similarity=0.072  Sum_probs=112.8

Q ss_pred             CCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHH---------------------------HHHHH
Q ss_conf             551555133100463146889998861165678976051001212677---------------------------88888
Q gi|254780291|r  160 KGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKE---------------------------LKRFY  212 (475)
Q Consensus       160 ~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~q---------------------------L~eFr  212 (475)
                      +-|++|.|=--.-+   +.+.+..+...+++-+=++.|||++.|...+                           ++++.
T Consensus         6 ~~i~~isD~h~~~~---~l~~l~~~~~~~~~D~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (260)
T 2yvt_A            6 RKVLAIKNFKERFD---LLPKLKGVIAEKQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFF   82 (260)
T ss_dssp             CEEEEEECCTTCGG---GHHHHHHHHHHHCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH
T ss_conf             58999953799989---999999988774999999916878999875899999987645455077502663188999999


Q ss_pred             HHH-CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCC
Q ss_conf             672-6557513024554447888766745455000003688899999999877655566654210010013444565521
Q gi|254780291|r  213 NIY-SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETY  291 (475)
Q Consensus       213 ~Vw-nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~  291 (475)
                      +.. +...|++.=.||||.-....                     +.......         ............      
T Consensus        83 ~~~~~~~~~~~~i~GNHD~~~~~~---------------------~~~~~~~~---------~~~~~~~~~~~~------  126 (260)
T 2yvt_A           83 REIGELGVKTFVVPGKNDAPLKIF---------------------LRAAYEAE---------TAYPNIRVLHEG------  126 (260)
T ss_dssp             HHHHTTCSEEEEECCTTSCCHHHH---------------------HHHHHHTT---------TTCTTEEECSSE------
T ss_pred             HHHHHCCCCEEEECCCCCHHHHHH---------------------HHHHCCCC---------CCCCCCCCCCCE------
T ss_conf             999855996388628861766545---------------------66641642---------123442123424------


Q ss_pred             EEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCE
Q ss_conf             03777544334302733555403641036751675300122221000256511343205655778878888840347957
Q gi|254780291|r  292 SISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKY  371 (475)
Q Consensus       292 ~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~  371 (475)
                      .+...+   +.+-.+...+.-  ...         ...++               ........-.|++..+.+..  ...
T Consensus       127 ~~~~~~---~~~~~~~~~~~~--~~~---------~~~~~---------------~~~~~~~~~~~~~~~~~~~~--~~~  175 (260)
T 2yvt_A          127 FAGWRG---EFEVIGFGGLLT--EHE---------FEEDF---------------VLKYPRWYVEYILKFVNELK--PRR  175 (260)
T ss_dssp             EEEETT---TEEEEEECSEEE--SSC---------CBSSS---------------SCEEEHHHHHHHGGGGGGSC--CCE
T ss_pred             EEEECC---CEEEEEECCCCC--CCC---------CCHHH---------------HHHHHHHHHHHHHHHHHHHC--CCC
T ss_conf             899539---779998457768--744---------53044---------------44345678999987653202--355


Q ss_pred             EEEECCCCCCC---------HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEE
Q ss_conf             99950047720---------038999999999985896179998642367652465553101389704564671899996
Q gi|254780291|r  372 IILFADDIDRF---------SSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEM  442 (475)
Q Consensus       372 IILN~HD~~~~---------sSi~~KrmFks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem  442 (475)
                      +++.+|-.+..         ........+...++..++..++.||.|+....      .++.++++.||+..++|..+|+
T Consensus       176 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vi~GH~H~~~~~------~g~~~iv~pGs~~~~~y~~i~~  249 (260)
T 2yvt_A          176 LVTIFYTPPIGEFVDRTPEDPKHHGSAVVNTIIKSLNPEVAIVGHVGKGHEL------VGNTIVVNPGEFEEGRYAFLDL  249 (260)
T ss_dssp             EEEEESSCCSCSSTTCBTTBSCCCSCHHHHHHHHHHCCSEEEECSSCCEEEE------ETTEEEEECCBGGGTEEEEEET
T ss_pred             EEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCEEE------ECCEEEEECCCCCCCCEEEEEE
T ss_conf             0578853873224554532220136799999987619979999544688487------5987999899554491799998


Q ss_pred             CCCEEEEEEE
Q ss_conf             4885999998
Q gi|254780291|r  443 TPHYINVTAY  452 (475)
Q Consensus       443 ~~~~atITgY  452 (475)
                      +++.+.+.-|
T Consensus       250 ~~~~~~~~~~  259 (260)
T 2yvt_A          250 TQHKIKLEQF  259 (260)
T ss_dssp             TTTEEEEEEC
T ss_pred             CCCEEEEEEC
T ss_conf             3996999977


No 8  
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.45  E-value=6.6e-06  Score=57.35  Aligned_cols=216  Identities=9%  Similarity=0.105  Sum_probs=108.8

Q ss_pred             CCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCH-HHHHHHHHHH-CCCCCEEECCCCCCCCCCCCCC
Q ss_conf             5515551331004631468899988611656789760510012126-7788888672-6557513024554447888766
Q gi|254780291|r  160 KGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTT-KELKRFYNIY-SLKFPFFRGLGSQEYIGNRPCR  237 (475)
Q Consensus       160 ~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q-~qL~eFr~Vw-nl~iPv~lGLGNHDYqNN~dC~  237 (475)
                      |-|+++.|+--..+  .+ |.+-.+......-+=|+.|||++.|.. .+..++-..- ..+.|++.=.||||..-     
T Consensus         6 ~~i~~~~d~hg~~~--al-e~~l~~~~~~~~D~vv~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~-----   77 (228)
T 1uf3_A            6 RYILATSNPMGDLE--AL-EKFVKLAPDTGADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPI-----   77 (228)
T ss_dssp             CEEEEEECCTTCHH--HH-HHHHTHHHHHTCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSH-----
T ss_pred             EEEEEEECCCCCHH--HH-HHHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHH-----
T ss_conf             29999956889999--99-99999877729999998788699987829999999974045775899968998167-----


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCC
Q ss_conf             74545500000368889999999987765556665421001001344456552103777544334302733555403641
Q gi|254780291|r  238 DPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSM  317 (475)
Q Consensus       238 ~P~~~d~s~n~CA~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYps  317 (475)
                              .+  .      +..-.....        ......                .-...+.+..+.+.++....+.
T Consensus        78 --------~~--~------~~~~~~~~~--------~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  117 (228)
T 1uf3_A           78 --------WE--Y------LREAANVEL--------VHPEMR----------------NVHETFTFWRGPYLVAGVGGEI  117 (228)
T ss_dssp             --------HH--H------HHHHHHHHH--------HCTTEE----------------ECBTSEEEETTTEEEEEECSEE
T ss_pred             --------HH--H------HHHHCCCCC--------CCCCCC----------------CCCCEEEEECCCEEEEECCCCC
T ss_conf             --------52--0------355314211--------234220----------------0132268841877787417744


Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHH--HHHHHHHHH
Q ss_conf             036751675300122221000256511343205655778878888840347957999500477200389--999999999
Q gi|254780291|r  318 FHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSID--QKRMFEKFL  395 (475)
Q Consensus       318 y~~V~~n~~~~~af~Iqv~n~Id~q~l~s~Vn~~~~iskWL~~DL~~A~~~gK~IILN~HD~~~~sSi~--~KrmFks~i  395 (475)
                      +..   ...+.                ...+-....-..|+.+.+.....  ...++-.|..+......  .-..+.+.+
T Consensus       118 ~~~---~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~h~~~~~~~~~~~~~~~~~~~~  176 (228)
T 1uf3_A          118 ADE---GEPEE----------------HEALRYPAWVAEYRLKALWELKD--YPKIFLFHTMPYHKGLNEQGSHEVAHLI  176 (228)
T ss_dssp             ESS---SCCBS----------------SSSCEEEHHHHHHHHGGGGGSCS--CCEEEEESSCBCBTTTBTTSBHHHHHHH
T ss_pred             CCC---CCCCH----------------HHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECCCCCCCCCCCCCHHHHHHH
T ss_conf             677---77602----------------32334458899999998664035--5148987138876532334625565555


Q ss_pred             HHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEE
Q ss_conf             8589617999864236765246555310138970456467189999648859999
Q gi|254780291|r  396 TQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEMTPHYINVT  450 (475)
Q Consensus       396 tk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem~~~~atIT  450 (475)
                      +..++..++.||.|+.++..      ++..+++.|++..|+|..+|++...+...
T Consensus       177 ~~~~~~l~~~GH~H~~~~~~------~~~~~in~Gs~~~g~y~i~d~~~~~v~~~  225 (228)
T 1uf3_A          177 KTHNPLLVLVAGKGQKHEML------GASWVVVPGDLSEGEYSLLDLRARKLETG  225 (228)
T ss_dssp             HHHCCSEEEECCSSCEEEEE------TTEEEEECCBGGGTEEEEEETTTTEEEEE
T ss_pred             HHCCCCEEEECCCCCCCEEE------CCEEEEECCCCCCCCEEEEEECCCEEEEE
T ss_conf             50288679957846661388------98899988876458279999519989998


No 9  
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=97.26  E-value=0.00016  Score=48.24  Aligned_cols=68  Identities=18%  Similarity=0.269  Sum_probs=45.5

Q ss_pred             CCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--HHHHHHHHHHH----CCCCCEEECCCCCCCCCCCC
Q ss_conf             3100463146889998861165678976051001212--67788888672----65575130245544478887
Q gi|254780291|r  168 PWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSST--TKELKRFYNIY----SLKFPFFRGLGSQEYIGNRP  235 (475)
Q Consensus       168 pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~--q~qL~eFr~Vw----nl~iPv~lGLGNHDYqNN~d  235 (475)
                      ++...+...+.+.+-..-..+++-+=++.|||.+.+.  ...+..+....    ..++|++.=.||||+..+..
T Consensus        19 ~~~~~~~~~~~~~~v~~a~~~~vD~vli~GDlfd~~~~~~~~~~~~~~~~~~l~~~~ipv~~i~GNHD~~~~~~   92 (333)
T 1ii7_A           19 PQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAIEGNHDRTQRGP   92 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEECCTTTCCSSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHCCH
T ss_conf             45799999999999999987399999989887889989999999999999999868995999646666210003


No 10 
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8}
Probab=97.11  E-value=0.002  Score=41.01  Aligned_cols=196  Identities=11%  Similarity=0.119  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHCCCEEEEEEECCCCCCCC---HHHHHHHHHHH---CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             6889998861165678976051001212---67788888672---65575130245544478887667454550000036
Q gi|254780291|r  177 FVEAINSLKSSKNIILGILTGDMTQSST---TKELKRFYNIY---SLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCA  250 (475)
Q Consensus       177 ~vesinsl~~~~~~~~gIINGDLTeFG~---q~qL~eFr~Vw---nl~iPv~lGLGNHDYqNN~dC~~P~~~d~s~n~CA  250 (475)
                      +.+.+-..-...++-+=++.|||++.+.   ...+..+....   +-++|+|.=.||||+.+...               
T Consensus        49 ~l~~i~~~a~~~~~D~vliaGDlf~~~~~~~~~~~~~~~~~~~~l~~~~~v~~i~GNHD~~~~~~---------------  113 (336)
T 2q8u_A           49 ALDKVVEEAEKREVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNHDWKGLKL---------------  113 (336)
T ss_dssp             HHHHHHHHHHHHTCSEEEEESCSBSCSSCCCHHHHHHHHHHHHHHHHHSCEEECCC------CHH---------------
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHC---------------
T ss_conf             99999999997499999989877779998889999999999998742897899457646410001---------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEECCCCEEEEECCCCCCHH
Q ss_conf             88899999999877655566654210010013444565521037775443343027335554036410367516753001
Q gi|254780291|r  251 FIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI  330 (475)
Q Consensus       251 ~sav~~M~s~I~dy~~q~s~i~efN~Ds~~y~~~~~~~~~~~vei~GSLSYSWd~gdvHfVQ~NYpsy~~V~~n~~~~~a  330 (475)
                            .......          +..........-      .+.+     +....+.++++-..|+....+..       
T Consensus       114 ------~~~~~~~----------~~~~~~~~~~~~------~~~~-----~~~~~~~v~~~~~~~~~~~~~~~-------  159 (336)
T 2q8u_A          114 ------FGNFVTS----------ISSDITFVMSFE------PVDV-----EAKRGQKVRILPFPYPDESEALR-------  159 (336)
T ss_dssp             ------HHHHHHH----------HCSSEEECCSSS------CEEE-----ECTTSCEEEEEEECCC--------------
T ss_pred             ------CHHHHHH----------CCCCCEECCCCC------CEEE-----ECCCCCEEEEECCCCCCCCCCCC-------
T ss_conf             ------1002221----------045500114556------5688-----70279669994366643000123-------


Q ss_pred             HHHHHHHCCCCCCEEEEEECCCCHH----HHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHH-----HHHHHHHHCCC
Q ss_conf             2222100025651134320565577----887888884034795799950047-7200389999-----99999985896
Q gi|254780291|r  331 FTVAVPEHISKQDLPSHVSNGSEIS----QWIRDDVFQAQREGKYIILFADDI-DRFSSIDQKR-----MFEKFLTQSKI  400 (475)
Q Consensus       331 f~Iqv~n~Id~q~l~s~Vn~~~~is----kWL~~DL~~A~~~gK~IILN~HD~-~~~sSi~~Kr-----mFks~itk~nV  400 (475)
                                        ....+..    +++++-+..+...+.+.|+-+|.. ..+.......     .+...+...++
T Consensus       160 ------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~I~~~H~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (336)
T 2q8u_A          160 ------------------KNEGDFRFFLESRLNKLYEEALKKEDFAIFMGHFTVEGLAGYAGIEQGREIIINRALIPSVV  221 (336)
T ss_dssp             ------------------CCSSHHHHHHHHHHHHHHHHHHTCSSEEEEEEESEETTCC--------CCCEECGGGSCTTS
T ss_pred             ------------------CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCC
T ss_conf             ------------------33067889999999999987326466539987542157666675223765455166631386


Q ss_pred             CEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCC---------CCEEEEEECCC
Q ss_conf             1799986423676524655531013897045646---------71899996488
Q gi|254780291|r  401 STIFTTRFTSSPESYIKDSTGRPVRVYNINKNSK---------NEFILLEMTPH  445 (475)
Q Consensus       401 ~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpk---------NrF~~lem~~~  445 (475)
                      ..|+-||.|.....-      .+-.++|.||...         .-|.++|+++.
T Consensus       222 d~v~~GH~H~~~~~~------~~~~i~y~Gs~~~~~~~E~~~~kg~~lvdi~~~  269 (336)
T 2q8u_A          222 DYAALGHIHSFREIQ------KQPLTIYPGSLIRIDFGEEADEKGAVFVELKRG  269 (336)
T ss_dssp             SEEEEESCSSCEEEE------ETTEEEECCCSSCCSGGGTTCCCEEEEEEEETT
T ss_pred             CEEEECCCCCCEEEC------CCCCEEECCCCCCCCCCCCCCCCEEEEEEECCC
T ss_conf             289927775755877------999889738962677251479987999998289


No 11 
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=85.29  E-value=1.8  Score=21.52  Aligned_cols=63  Identities=11%  Similarity=0.176  Sum_probs=46.7

Q ss_pred             HHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCC----------CEEEEEECCCEEEEEEEECCCCC
Q ss_conf             999998589617999864236765246555310138970456467----------18999964885999998516763
Q gi|254780291|r  391 FEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKN----------EFILLEMTPHYINVTAYERRGKV  458 (475)
Q Consensus       391 Fks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkN----------rF~~lem~~~~atITgY~~Rd~t  458 (475)
                      +..+....++..++.||-|..-   .+.  ..++-++|-||+...          -|.++|+++..+++.-|+-++.-
T Consensus       133 l~~~~~~~~~dvvv~GHTH~p~---~~~--~~g~l~iNPGS~~~~r~~~~~~~~pS~aiLdi~~~~v~v~~y~l~~~~  205 (215)
T 2a22_A          133 LEQWQRRLDCDILVTGHTHKLR---VFE--KNGKLFLNPGTATGAFSALTPDAPPSFMLMALQGNKVVLYVYDLRDGK  205 (215)
T ss_dssp             HHHHHHHHTCSEEEECSSCCCE---EEE--ETTEEEEECCCSSCCCCTTSTTCCCEEEEEEEETTEEEEEEEEEETTE
T ss_pred             HHHHHHCCCCCEEEECCCCCCC---EEE--ECCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCE
T ss_conf             9998750289989979989764---799--999999948987777778788888889999998999999999934992


No 12 
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 1w24_A 2r17_A
Probab=84.61  E-value=1.9  Score=21.32  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=43.7

Q ss_pred             HHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC--CC--------CEEEEEECCCEEEEEEEECCCC
Q ss_conf             999985896179998642367652465553101389704564--67--------1899996488599999851676
Q gi|254780291|r  392 EKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS--KN--------EFILLEMTPHYINVTAYERRGK  457 (475)
Q Consensus       392 ks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp--kN--------rF~~lem~~~~atITgY~~Rd~  457 (475)
                      ....+....-.||.||-|....   +..  .+.-|+|-||+.  ++        -|-.+|+++..+++.-|+..+.
T Consensus       110 ~~~~~~~~~divi~GHTH~p~~---~~~--~~~~iiNPGS~~~pr~~~~~~~~~syaIld~~~~~v~~~~~~l~~~  180 (192)
T 1z2w_A          110 ALLQRQFDVDILISGHTHKFEA---FEH--ENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGD  180 (192)
T ss_dssp             HHHHHHHSSSEEECCSSCCCEE---EEE--TTEEEEECCCTTCCCCSSCSCCCCEEEEEEEETTEEEEEEEEEETT
T ss_pred             HHHHHHCCCCEEEECCCCCCEE---EEE--CCEEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEECCC
T ss_conf             9998735899899788785038---999--9999997998888888988888778999998399999999993599


No 13 
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=81.94  E-value=2.5  Score=20.63  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=42.9

Q ss_pred             EEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH------HHH-HHHHCCCCCEEECCCCCCC
Q ss_conf             15551331004631468899988611656789760510012126778------888-8672655751302455444
Q gi|254780291|r  162 IAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKEL------KRF-YNIYSLKFPFFRGLGSQEY  230 (475)
Q Consensus       162 ~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL------~eF-r~Vwnl~iPv~lGLGNHDY  230 (475)
                      |++|+|--  .+.+. .+++-....+..+-.=|+.||++..|....+      .+. ....+++.|++.-.||||.
T Consensus        28 i~viSDiH--gn~~a-le~vl~~~~~~~~D~ii~lGDlv~~gp~~~~~~~~~~~~~l~~l~~~~~~~~~V~GNhD~  100 (208)
T 1su1_A           28 LMFASDIH--GSLPA-TERVLELFAQSGAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDS  100 (208)
T ss_dssp             EEEECCCT--TBHHH-HHHHHHHHHHHTCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCC
T ss_pred             EEEEEECC--CCHHH-HHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCCEEEECCCCCH
T ss_conf             99993168--99899-999999987569988999166013376520111128099999998549967996477837


No 14 
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=74.40  E-value=3.2  Score=19.85  Aligned_cols=50  Identities=14%  Similarity=0.168  Sum_probs=37.9

Q ss_pred             HCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf             5896179998642367652465553101389704564671899996488599999
Q gi|254780291|r  397 QSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNSKNEFILLEMTPHYINVTA  451 (475)
Q Consensus       397 k~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvpkNrF~~lem~~~~atITg  451 (475)
                      ..+...++.||-|....   +  .-+++-++|-||+..+.|..++++...+++.=
T Consensus       126 ~~~~divi~GHTH~~~~---~--~~~~~~iiNPGS~~~~syail~ie~~~v~~ei  175 (178)
T 2kkn_A          126 NEKPQVILFGHTHEPED---T--VKAGVRFLNPGSLAEGSYAVLELDGGEVRFEL  175 (178)
T ss_dssp             SSCCSEEECCSCSSCCE---E--EETTEEEECCCCTTTTEEEEEEEETTEEEEEE
T ss_pred             HCCCCEEEECCCCCCEE---E--EECCEEEEECCCCCCCEEEEEEEECCEEEEEE
T ss_conf             13898899688565218---9--98999999798999986999999899999999


No 15 
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=64.88  E-value=6.4  Score=17.87  Aligned_cols=47  Identities=13%  Similarity=0.088  Sum_probs=33.1

Q ss_pred             CCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC-------CCCEEEEEECCCEEEE
Q ss_conf             896179998642367652465553101389704564-------6718999964885999
Q gi|254780291|r  398 SKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS-------KNEFILLEMTPHYINV  449 (475)
Q Consensus       398 ~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp-------kNrF~~lem~~~~atI  449 (475)
                      .+...++.||.|.......     ....+++.||+-       +..|.++|.+...+++
T Consensus       166 ~~~~~vv~GHtH~~~~~~~-----~~~~~iN~Gsvg~~~~~~~~~~y~i~d~~~~~v~~  219 (252)
T 1nnw_A          166 KDYEMLIVASPMYPVDAMT-----RYGRVVCPGSVGFPPGKEHKATFALVDVDTLKPKF  219 (252)
T ss_dssp             TTSSEEEESTTCSEEEEEE-----TTEEEEEECCSSSCSSSSCCEEEEEEETTTCCEEE
T ss_pred             CCCCEEEECCCCEEEEEEE-----CCCEEECCCEEEECCCCCCCCEEEEEECCCCEEEE
T ss_conf             4662489724744678860-----78368718616007899987779999937987999


No 16 
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae TIGR4} SCOP: d.159.1.7
Probab=58.36  E-value=8.3  Score=17.12  Aligned_cols=57  Identities=11%  Similarity=0.138  Sum_probs=41.2

Q ss_pred             HHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCC-------CCCEEEEEECCCEEEEEEEECC
Q ss_conf             9985896179998642367652465553101389704564-------6718999964885999998516
Q gi|254780291|r  394 FLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINKNS-------KNEFILLEMTPHYINVTAYERR  455 (475)
Q Consensus       394 ~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGSvp-------kNrF~~lem~~~~atITgY~~R  455 (475)
                      .....+...+|.||-|......   .  +.+-++|-||+-       ...|-++|.+....++.-|..-
T Consensus       100 ~~~~~~~divi~GHTH~p~~~~---~--~~~~iiNPGSvg~pr~~~~~~syail~~~~~~~~v~~~~~d  163 (176)
T 3ck2_A          100 WAQEEEAAICLYGHLHVPSAWL---E--GKILFLNPGSISQPRGTIRECLYARVEIDDSYFKVDFLTRD  163 (176)
T ss_dssp             HHHHTTCSEEECCSSCCEEEEE---E--TTEEEEEECCSSSCCTTCCSCCEEEEEECSSEEEEEEECTT
T ss_pred             HHHHCCCCEEEECCCCCCEEEE---E--CCEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEEEEEC
T ss_conf             9985599899968977425999---8--99999935886677899985689999981999999999858


No 17 
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=55.66  E-value=7.2  Score=17.55  Aligned_cols=80  Identities=21%  Similarity=0.324  Sum_probs=58.2

Q ss_pred             CCCCCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCC--CCC-CHHHHHHHHHHH----CCCCCEEECCCCCC
Q ss_conf             20155155513310046314688999886116567897605100--121-267788888672----65575130245544
Q gi|254780291|r  157 CHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMT--QSS-TTKELKRFYNIY----SLKFPFFRGLGSQE  229 (475)
Q Consensus       157 ~~~~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLT--eFG-~q~qL~eFr~Vw----nl~iPv~lGLGNHD  229 (475)
                      |.+ ++-+++-||..--..-|-.....+-..+++++.|-++.+-  ..| +..-+..+++++    ..++|+..+-|.|.
T Consensus        93 ~e~-~VDiL~~P~~~r~d~gi~hvlak~A~e~gValEIn~s~ll~~~~~~R~~~l~n~~~ll~L~kky~~piVvsSdAhs  171 (212)
T 1v77_A           93 IEK-GVDAIISPWVNRKDPGIDHVLAKLMVKKNVALGFSLRPLLYSNPYERANLLRFMMKAWKLVEKYKVRRFLTSSAQE  171 (212)
T ss_dssp             HHT-TCSEEECTTTTSSSCSCCHHHHHHHHHHTCEEEEESHHHHHSCHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSS
T ss_pred             HHC-CCCEEECCCCCCCCCCCCHHHHHHHHHCCEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCC
T ss_conf             717-9548956865467778578999999978918999762764479864789999999999999981998899769998


Q ss_pred             CCCCCCCCCCC
Q ss_conf             47888766745
Q gi|254780291|r  230 YIGNRPCRDPY  240 (475)
Q Consensus       230 YqNN~dC~~P~  240 (475)
                      -   .+++.|.
T Consensus       172 ~---~dlrsp~  179 (212)
T 1v77_A          172 K---WDVRYPR  179 (212)
T ss_dssp             G---GGCCCHH
T ss_pred             H---HHCCCHH
T ss_conf             2---0127999


No 18 
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC structure funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=46.99  E-value=13  Score=15.95  Aligned_cols=60  Identities=18%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             EEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCC
Q ss_conf             155513310046314688999886116567897605100121267788888672655751302455444
Q gi|254780291|r  162 IAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEY  230 (475)
Q Consensus       162 ~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDY  230 (475)
                      |++|+|--  .|-+.+ +++-....++++-.=|.-||++..+-   ++++.   ++..|++--.||||.
T Consensus        28 I~iiSDiH--gn~~al-e~vl~~~~~~~~D~vi~lGDiv~~~~---~~~l~---~~~~~~~~V~GNhD~   87 (190)
T 1s3l_A           28 IGIMSDTH--DHLPNI-RKAIEIFNDENVETVIHCGDFVSLFV---IKEFE---NLNANIIATYGNNDG   87 (190)
T ss_dssp             EEEECCCT--TCHHHH-HHHHHHHHHSCCSEEEECSCCCSTHH---HHHGG---GCSSEEEEECCTTCC
T ss_pred             EEEEECCC--CCHHHH-HHHHHHHHHCCCCEEEECCCCCCHHH---HHHHH---HCCCCEEEEECCCCC
T ss_conf             99998089--996999-99999997559999998788389899---99987---347608997276543


No 19 
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, complete proteome, DNA binding, DNA repair; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=37.38  E-value=18  Score=14.99  Aligned_cols=53  Identities=17%  Similarity=0.167  Sum_probs=31.2

Q ss_pred             HHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             788888403479579995004-77200389----999999999858961799986423676
Q gi|254780291|r  358 IRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPE  413 (475)
Q Consensus       358 L~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe  413 (475)
                      +..=|..|..++++|+   +- +-+.++.|    +..+.+.++++.+..++|.+|||+=.+
T Consensus       677 ~~~il~~at~~SLvii---DElGrGTst~DG~aia~avle~l~~~~~~~~lfaTH~~eL~~  734 (800)
T 1wb9_A          677 TANILHNATEYSLVLM---DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ  734 (800)
T ss_dssp             HHHHHHHCCTTEEEEE---ESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred             HHHHHHHCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             9999985899829998---059999985999999999999998636988999895089988


No 20 
>1wgo_A VPS10 domain-containing receptor sorcs2; polycystic kidney disease, PKD, structural genomics, KIAA1329 protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=37.12  E-value=8.9  Score=16.93  Aligned_cols=13  Identities=8%  Similarity=0.197  Sum_probs=9.9

Q ss_pred             EEEEEEECCCEEE
Q ss_conf             4433430273355
Q gi|254780291|r  298 SQSYSWNIDNVHF  310 (475)
Q Consensus       298 SLSYSWd~gdvHf  310 (475)
                      +++|+|||||-..
T Consensus        61 ~~sy~WDFGDG~~   73 (123)
T 1wgo_A           61 TTKYQVDLGDGFK   73 (123)
T ss_dssp             SCEEEEECSSSCE
T ss_pred             CEEEEEEECCCCC
T ss_conf             1689999089971


No 21 
>3f9u_A Putative exported cytochrome C biogenesis- related protein; structural genomics, PSI-2, protein structure initiative; 2.20A {Bacteroides fragilis nctc 9343}
Probab=35.58  E-value=10  Score=16.60  Aligned_cols=22  Identities=14%  Similarity=-0.071  Sum_probs=20.2

Q ss_pred             HHHHHHHHCCCCCCEEEEECCC
Q ss_conf             8788888403479579995004
Q gi|254780291|r  357 WIRDDVFQAQREGKYIILFADD  378 (475)
Q Consensus       357 WL~~DL~~A~~~gK~IILN~HD  378 (475)
                      .++..|.+|+.+||+|+|+|.-
T Consensus        35 d~~~al~~Ak~~gKpvll~F~A   56 (172)
T 3f9u_A           35 DYDLGMEYARQHNKPVMLDFTG   56 (172)
T ss_dssp             CHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CHHHHHHHHHHCCCEEEEEEEC
T ss_conf             8999999999839939999976


No 22 
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=32.74  E-value=21  Score=14.51  Aligned_cols=70  Identities=19%  Similarity=0.244  Sum_probs=41.9

Q ss_pred             HHHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCEEEEEEECC
Q ss_conf             8788888403479579995004-77200389----999999999858961799986423676524655531013897045
Q gi|254780291|r  357 WIRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINK  431 (475)
Q Consensus       357 WL~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe~~lec~~GykVPvy~iGS  431 (475)
                      =+..=|..|..+++++|   +- +-+.++.|    +-.+.+.+.++.+..++|.+|||+=.+-.   .....|..+....
T Consensus       858 e~~~IL~~at~~SLVll---DElGrGTst~dG~aIA~avle~L~~~~~~~~lfaTHy~~L~~~~---~~~~~v~~~~m~~  931 (1022)
T 2o8b_B          858 ETASILMHATAHSLVLV---DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDY---SQNVAVRLGHMAC  931 (1022)
T ss_dssp             HHHHHHHHCCTTCEEEE---ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHT---SSCSSEEEEEEEE
T ss_pred             HHHHHHHHCCCCCEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH---HCCCCEEEEEEEE
T ss_conf             99999985899848998---23889988578999999999999863698599968838999866---4084406635788


Q ss_pred             C
Q ss_conf             6
Q gi|254780291|r  432 N  432 (475)
Q Consensus       432 v  432 (475)
                      .
T Consensus       932 ~  932 (1022)
T 2o8b_B          932 M  932 (1022)
T ss_dssp             C
T ss_pred             E
T ss_conf             8


No 23 
>3fk8_A Disulphide isomerase; APC61824.1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.30A {Xylella fastidiosa TEMECULA1}
Probab=32.54  E-value=19  Score=14.81  Aligned_cols=30  Identities=10%  Similarity=0.113  Sum_probs=22.8

Q ss_pred             CCHHHHHHHHHHHCCCCCCEEEEECCC--CCC
Q ss_conf             557788788888403479579995004--772
Q gi|254780291|r  352 SEISQWIRDDVFQAQREGKYIILFADD--IDR  381 (475)
Q Consensus       352 ~~iskWL~~DL~~A~~~gK~IILN~HD--~~~  381 (475)
                      .+...-+++-|..|+.+||+++|+|.-  |+.
T Consensus        12 ~~~~~d~~~~l~~a~~~~K~vlv~F~a~WC~~   43 (133)
T 3fk8_A           12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTD   43 (133)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHH
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEECCCCHH
T ss_conf             77288899999999985992999994691930


No 24 
>2kzw_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina mazei}
Probab=29.70  E-value=16  Score=15.25  Aligned_cols=14  Identities=14%  Similarity=0.316  Sum_probs=11.0

Q ss_pred             EEEEEEEEECCCEE
Q ss_conf             75443343027335
Q gi|254780291|r  296 SGSQSYSWNIDNVH  309 (475)
Q Consensus       296 ~GSLSYSWd~gdvH  309 (475)
                      .+..+|.|||||-.
T Consensus        86 ~~~~~~~WdFgdG~   99 (145)
T 2kzw_A           86 ENATSRLWMFGDGN   99 (145)
T ss_dssp             BSCSEEEECCSSSS
T ss_pred             CCCCEEEEEECCCC
T ss_conf             99758899909998


No 25 
>3jqu_A Collagenase; PKD, beta barrel, cell adhesion; 1.40A {Clostridium histolyticum} PDB: 3js7_A
Probab=26.71  E-value=25  Score=13.94  Aligned_cols=12  Identities=25%  Similarity=0.623  Sum_probs=9.2

Q ss_pred             EEEEEECCCEEE
Q ss_conf             433430273355
Q gi|254780291|r  299 QSYSWNIDNVHF  310 (475)
Q Consensus       299 LSYSWd~gdvHf  310 (475)
                      ++|.|++||--.
T Consensus        35 ~~y~W~fgdG~~   46 (87)
T 3jqu_A           35 VSYDWDFGDGAT   46 (87)
T ss_dssp             EEEEEECSSSCE
T ss_pred             EEEEEEECCCCE
T ss_conf             999999499988


No 26 
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase; 1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1qxa_A 1ng5_A 1qx6_A*
Probab=26.46  E-value=18  Score=14.99  Aligned_cols=18  Identities=28%  Similarity=0.731  Sum_probs=11.9

Q ss_pred             CCCCCEEECCCCCCCCCC
Q ss_conf             655751302455444788
Q gi|254780291|r  216 SLKFPFFRGLGSQEYIGN  233 (475)
Q Consensus       216 nl~iPv~lGLGNHDYqNN  233 (475)
                      ++..|++.|-.||||-|-
T Consensus        72 slnypvlqgktnhdylnl   89 (235)
T 1qwz_A           72 SLNYPVLQGKTNHDYLNL   89 (235)
T ss_dssp             SCEEEEECCSSSSTTTSB
T ss_pred             CCCCHHHCCCCCCCCCCC
T ss_conf             347553247676540436


No 27 
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3
Probab=23.89  E-value=29  Score=13.50  Aligned_cols=51  Identities=16%  Similarity=0.141  Sum_probs=29.8

Q ss_pred             HHHHHHHHHCCCCCCEEEEECCC---CCC--CHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             88788888403479579995004---772--0038999999999985896179998
Q gi|254780291|r  356 QWIRDDVFQAQREGKYIILFADD---IDR--FSSIDQKRMFEKFLTQSKISTIFTT  406 (475)
Q Consensus       356 kWL~~DL~~A~~~gK~IILN~HD---~~~--~sSi~~KrmFks~itk~nV~AIF~a  406 (475)
                      +++++.+..+...|+|+++.=--   ++.  .........|-++++++++.-+|-+
T Consensus       200 ~~~~~~~~~~~~~~~Pv~~gEfG~~~~~~~~~~~~~~~~~~~~~~~~~~igw~~W~  255 (291)
T 1egz_A          200 ESLRNKARQALNNGIALFVTEWGTVNADGNGGVNQTETDAWVTFMRDNNISNANWA  255 (291)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEESSCTTSCSCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             78999999998759985863027867788876489999999999998599789997


No 28 
>2o8b_A DNA mismatch repair protein MSH2; DNA damage response, somatic hypermutation, protein-DNA complex, DNA mispair, cancer, ABC transporter ATPase; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 2o8e_A*
Probab=23.76  E-value=30  Score=13.48  Aligned_cols=54  Identities=20%  Similarity=0.140  Sum_probs=33.6

Q ss_pred             HHHHHHHHCCCCCCEEEEECCC-CCCCHHHH----HHHHHHHHHHHCCCCEEEEEEEECCCC
Q ss_conf             8788888403479579995004-77200389----999999999858961799986423676
Q gi|254780291|r  357 WIRDDVFQAQREGKYIILFADD-IDRFSSID----QKRMFEKFLTQSKISTIFTTRFTSSPE  413 (475)
Q Consensus       357 WL~~DL~~A~~~gK~IILN~HD-~~~~sSi~----~KrmFks~itk~nV~AIF~aH~Hqshe  413 (475)
                      =+..=|..|..+++++|   +- +-+.++.|    +..+.+.+.++.+..++|+||||+=.+
T Consensus       731 e~~~il~~at~~SLvll---DElgrGT~~~dG~aia~aile~l~~~~~~~~lfaTH~~eL~~  789 (934)
T 2o8b_A          731 ETASILRSATKDSLIII---DELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTA  789 (934)
T ss_dssp             HHHHHHTTCCTTSEEEE---ESCCCSSCHHHHHHHHHHHHHHHHHTTCCEEEEECCCTTSTT
T ss_pred             HHHHHHHHCCCCEEEEE---ECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf             99999983899839998---218899985678999999999998647987999885288988


No 29 
>2w70_A Biotin carboxylase; ligase, inhibitor, ATP-binding, fatty acid biosynthesis, nucleotide-binding, lipid synthesis, ATP-grAsp domain; HET: L22; 1.77A {Escherichia coli} PDB: 1bnc_A 2j9g_A* 2v58_A* 2v59_A* 2v5a_A* 2vr1_A* 2w6m_A* 1dv1_A* 2w6o_A* 2w6n_A* 2w6q_A* 2w6z_A* 2w6p_A* 2w71_A* 3jzf_A* 3jzi_A* 1dv2_A* 2gps_A 2gpw_A 3g8c_A* ...
Probab=22.33  E-value=32  Score=13.30  Aligned_cols=65  Identities=9%  Similarity=0.177  Sum_probs=26.5

Q ss_pred             CCCCCCCEEEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHH-CCCCCEEE
Q ss_conf             0220155155513310046314688999886116567897605100121267788888672-65575130
Q gi|254780291|r  155 LNCHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIY-SLKFPFFR  223 (475)
Q Consensus       155 ~~~~~~~~~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vw-nl~iPv~l  223 (475)
                      ..|...|+..|.-++--++.  +-+-+.+-.-.+.+-.-++-|  +++.-.+..++.+..- .+++|+.+
T Consensus        93 ~~~~~~Gi~fIGPs~~~i~~--~gDK~~ar~la~~~gvp~ip~--~~~~~~~~~~ea~~~a~~iGyPViI  158 (449)
T 2w70_A           93 EQVERSGFIFIGPKAETIRL--MGDKVSAIAAMKKAGVPCVPG--SDGPLGDDMDKNRAIAKRIGYPVII  158 (449)
T ss_dssp             HHHHHTTCEESSSCHHHHHH--HHSHHHHHHHHHHHTCCBCSB--CSSCCCSCHHHHHHHHHHHCSSEEE
T ss_pred             HHHHHCCCEEECCCHHHHHH--HCCHHHHHHHHHHCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             88998899288889999987--409899999999859996898--7666688599999999866996688


No 30 
>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease, HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
Probab=22.17  E-value=26  Score=13.89  Aligned_cols=53  Identities=15%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             HHHHHHHHCCC-------EEEEEEECC---CCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCCC
Q ss_conf             89998861165-------678976051---001212677888886726557513024554447888
Q gi|254780291|r  179 EAINSLKSSKN-------IILGILTGD---MTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNR  234 (475)
Q Consensus       179 esinsl~~~~~-------~~~gIINGD---LTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDYqNN~  234 (475)
                      |--.|+..+.+       .+|-|+.+.   +---+.+.--..|+-+||-   ..-|.||||=...+
T Consensus       128 eH~rSI~~~~nLd~~DF~cR~lV~~~~~s~wIpl~Es~LIr~~~P~WN~---~iDGFGnHDPG~gR  190 (235)
T 3mx1_A          128 EHGRNIAKTSNLDLCDFSCRFVIFEATGSDMISTVQAALIKIYKPLWNT---VVDGFGNHTPGAGR  190 (235)
T ss_dssp             HHHHHHHTCSSCCGGGEEEEEEECCSGGGGGHHHHHHHHHHHHCCHHHH---TSCCTTCCCCCSSC
T ss_pred             HHHHHHHCCCCCCHHHEEEEEEEEECCCCCHHHHHHHHHHHHCCCCHHC---CCCCCCCCCCCCCC
T ss_conf             9998774025998667489999982575413568999999860730330---45555578998665


No 31 
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=21.97  E-value=27  Score=13.77  Aligned_cols=21  Identities=14%  Similarity=0.202  Sum_probs=19.1

Q ss_pred             HHHHHHHHCCCCCCEEEEECCC
Q ss_conf             8788888403479579995004
Q gi|254780291|r  357 WIRDDVFQAQREGKYIILFADD  378 (475)
Q Consensus       357 WL~~DL~~A~~~gK~IILN~HD  378 (475)
                      | +.-|..|..+|||++++|.-
T Consensus        35 ~-~eal~~Ak~~~Kpvlv~F~a   55 (164)
T 1sen_A           35 L-EDGKKEAAASGLPLMVIIHK   55 (164)
T ss_dssp             H-HHHHHHHHHHTCCEEEEEEC
T ss_pred             H-HHHHHHHHHCCCCEEEEECC
T ss_conf             9-99999999819979999888


No 32 
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=21.64  E-value=16  Score=15.19  Aligned_cols=17  Identities=12%  Similarity=0.170  Sum_probs=10.2

Q ss_pred             ECCCCHHHHHHHHHHHC
Q ss_conf             05655778878888840
Q gi|254780291|r  349 SNGSEISQWIRDDVFQA  365 (475)
Q Consensus       349 n~~~~iskWL~~DL~~A  365 (475)
                      ++...+.+|+.+-|.+|
T Consensus       263 ~n~~~l~e~l~~lL~~a  279 (321)
T 1w9c_A          263 NNQIFLQEYVANLLKSA  279 (321)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH
T ss_conf             55999999999999876


No 33 
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=21.59  E-value=26  Score=13.90  Aligned_cols=12  Identities=8%  Similarity=0.357  Sum_probs=8.9

Q ss_pred             EEEEEEEECCCE
Q ss_conf             544334302733
Q gi|254780291|r  297 GSQSYSWNIDNV  308 (475)
Q Consensus       297 GSLSYSWd~gdv  308 (475)
                      +..+|+|||||-
T Consensus        25 ~~~s~~WdFgDG   36 (80)
T 1b4r_A           25 PVTATRWDFGDG   36 (80)
T ss_dssp             SCSEEEEECCSS
T ss_pred             CCEEEEEEECCC
T ss_conf             950899992899


No 34 
>1t71_A Phosphatase, conserved; crystal, X-RAY crystallography, structural genomics, berkeley structural genomics center, BSGC, PSI; 2.10A {Mycoplasma pneumoniae M129} SCOP: d.159.1.9
Probab=21.44  E-value=33  Score=13.19  Aligned_cols=70  Identities=17%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             EEEECCCEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCCCCCCCC
Q ss_conf             55513310046314688999886116567897605100121267788888672655751302455444788
Q gi|254780291|r  163 AVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGN  233 (475)
Q Consensus       163 ~~~~~pw~k~~~~~~vesinsl~~~~~~~~gIINGDLTeFG~q~qL~eFr~Vwnl~iPv~lGLGNHDYqNN  233 (475)
                      ..|.|--=+.-..+..+.+-.|++.-++-|-|+||.=+.-|.-=..+-+++..+.++-++- +|||-+.+-
T Consensus         8 LfiGDIvG~~Gr~~v~~~Lp~l~~~~~iDfvIaNgENaa~G~Git~~~~~~l~~~GvDviT-~GNH~wd~k   77 (281)
T 1t71_A            8 IFLGDVYGKAGRNIIKNNLAQLKSKYQADLVIVNAENTTHGKGLSLKHYEFLKEAGVNYIT-MGNHTWFQK   77 (281)
T ss_dssp             EEECEEBHHHHHHHHHTTHHHHHHHHTCSEEEEECTBTTTTSSCCHHHHHHHHHHTCCEEE-CCTTTTCCG
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEE-CCCCCCCCH
T ss_conf             9998068888999999980999998289999989853678969899999999971998992-472102563


No 35 
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=21.39  E-value=10  Score=16.48  Aligned_cols=26  Identities=35%  Similarity=0.715  Sum_probs=22.0

Q ss_pred             HCCCC-CCCEEEEEEHHHCCCCCCCEE
Q ss_conf             23333-686089980542022015515
Q gi|254780291|r  138 LLPHK-QNMDIVVDVNKILNCHHKGIA  163 (475)
Q Consensus       138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~  163 (475)
                      |.||+ .+|.|-.+.|+-|.||-...|
T Consensus        40 lIPH~i~gy~It~~~N~Cl~CH~~~~a   66 (123)
T 1jni_A           40 MVPHSVANYQVTKNVNQCLNCHSPENS   66 (123)
T ss_dssp             CCSSCCTTCCEETTEETTHHHHSTTTH
T ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf             687335676552688837458687457


No 36 
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=20.45  E-value=13  Score=15.81  Aligned_cols=26  Identities=27%  Similarity=0.758  Sum_probs=20.7

Q ss_pred             HCCCC-CCCEEEEEEHHHCCCCCCCEE
Q ss_conf             23333-686089980542022015515
Q gi|254780291|r  138 LLPHK-QNMDIVVDVNKILNCHHKGIA  163 (475)
Q Consensus       138 ~~~~~-~~~~~~~~~~~~~~~~~~~~~  163 (475)
                      +.||+ ..|.|-.+.|+-|.||-...|
T Consensus        41 lIPH~iegy~It~~~N~Cl~CH~~~~a   67 (130)
T 1ogy_B           41 VIPHSIEGYQLSVNANRCLECHRRQYS   67 (130)
T ss_dssp             CBCSCCTTCCBSSSCBGGGGTSCCCCT
T ss_pred             CCCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf             687247785550789826658796346


Done!