RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780291|ref|YP_003064704.1| hypothetical protein
CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
         (475 letters)



>1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase
           family, (beta/alpha)8 barrel; 1.60A {Pseudomonas
           mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A
           2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* (A:1-102,A:174-475)
          Length = 404

 Score = 28.9 bits (63), Expect = 1.3
 Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 1/69 (1%)

Query: 263 DHYPQIKSI-KEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSV 321
              P +    +E +     + +    GE +   ++    +  +      +   + +    
Sbjct: 156 TQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYD 215

Query: 322 YFNDEWSNI 330
              D W  I
Sbjct: 216 RALDRWHTI 224


>3bos_A Putative DNA replication factor; YP_927791.1, putative DNA
           replication regulator HDA, structural genomics; HET: MSE
           CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175)
          Length = 175

 Score = 27.9 bits (61), Expect = 2.7
 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 5/56 (8%)

Query: 356 QWIRDDVFQAQREGKYIILFADDIDRFSSIDQ-----KRMFEKFLTQSKISTIFTT 406
                     +   ++ ++  DD+D  +           ++ +   Q + S I + 
Sbjct: 90  IHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSA 145


>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase;
           oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter
           sphaeroides} (B:)
          Length = 130

 Score = 27.6 bits (61), Expect = 3.6
 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
           ++PH  +   + V+ N+ L CH +  +
Sbjct: 41  VIPHSIEGYQLSVNANRCLECHRRQYS 67


>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A
           {Staphylococcus aureus subsp} (A:1-153)
          Length = 153

 Score = 26.3 bits (58), Expect = 7.6
 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 353 EISQWIRDDVFQAQREG-KYIILFADDIDRFSSIDQKRM 390
           EI  +  +      + G   + L ++D D    ID +++
Sbjct: 84  EIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKL 122


>1wpi_A YKR049C, hypothetical 15.6 kDa protein in NAP1-TRK2
           intergenic region; structural genomics, OCSP, NESG,
           protein structure initiative; NMR {Saccharomyces
           cerevisiae} (A:)
          Length = 133

 Score = 26.3 bits (58), Expect = 7.6
 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 10/49 (20%)

Query: 390 MFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINK-NSKNEF 437
            ++    Q +  ++FT    S+ +S          +   + K +  + F
Sbjct: 3   FWKTLQRQPRTISLFTNDIASNIKSQ---------KCLQLLKGDVSHRF 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006)
          Length = 120

 Score = 26.3 bits (58), Expect = 8.4
 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 4/18 (22%)

Query: 221 FFRGLGSQEYIGNRPCRD 238
           F+RG+  Q  +   P RD
Sbjct: 16  FYRGMTMQVAV---P-RD 29


>2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein
           antibody complex, toxin/immune system complex; 2.61A
           {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:874-1098)
          Length = 225

 Score = 26.2 bits (56), Expect = 9.0
 Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 15/194 (7%)

Query: 221 FFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQR 280
            F    S+  +  +      ++  +     +I         +       +I     ++  
Sbjct: 42  LFNLESSKIEVILKNAIVYNSMYENFSTSFWI--RIPKYFNSISLNNEYTIINCMENNSG 99

Query: 281 YRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHIS 340
           ++    +GE         +     +           M +   + + W  +         +
Sbjct: 100 WKVSLNYGEIIWTLQDTQEIKQRVVFK------YSQMINISDYINRWIFVTIT-----NN 148

Query: 341 KQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSS--IDQKRMFEKFLTQS 398
           + +      NG  I Q    ++         +       D      I    +F+K L + 
Sbjct: 149 RLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEK 208

Query: 399 KISTIFTTRFTSSP 412
           +I  ++  +  S  
Sbjct: 209 EIKDLYDNQSNSGI 222


>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C,
           proteolytic fragment, nitrate reductase subunit,
           oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae}
           (A:)
          Length = 123

 Score = 26.4 bits (58), Expect = 9.1
 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
           ++PH   N  +  +VN+ LNCH    +
Sbjct: 40  MVPHSVANYQVTKNVNQCLNCHSPENS 66


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,568,453
Number of extensions: 162595
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 15
Length of query: 475
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 383
Effective length of database: 1,845,989
Effective search space: 707013787
Effective search space used: 707013787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)