RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] (475 letters) >1zja_A Trehalulose synthase; sucrose isomerase, alpha-amylase family, (beta/alpha)8 barrel; 1.60A {Pseudomonas mesoacidophila} PDB: 1zjb_A 2pwd_A* 2pwh_A 2pwg_A 2pwe_A* 2pwf_A* 3gbe_A* 3gbd_A* (A:1-102,A:174-475) Length = 404 Score = 28.9 bits (63), Expect = 1.3 Identities = 7/69 (10%), Positives = 20/69 (28%), Gaps = 1/69 (1%) Query: 263 DHYPQIKSI-KEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSV 321 P + +E + + + GE + ++ + + + + + Sbjct: 156 TQGPNLHRYLQEMHEKVFDHYDAVTAGEIFGAPLNQVPLFIDSRRKELDMAFTFDLIRYD 215 Query: 322 YFNDEWSNI 330 D W I Sbjct: 216 RALDRWHTI 224 >3bos_A Putative DNA replication factor; YP_927791.1, putative DNA replication regulator HDA, structural genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis SB2B} (A:1-175) Length = 175 Score = 27.9 bits (61), Expect = 2.7 Identities = 6/56 (10%), Positives = 18/56 (32%), Gaps = 5/56 (8%) Query: 356 QWIRDDVFQAQREGKYIILFADDIDRFSSIDQ-----KRMFEKFLTQSKISTIFTT 406 + ++ ++ DD+D + ++ + Q + S I + Sbjct: 90 IHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSA 145 >1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} (B:) Length = 130 Score = 27.6 bits (61), Expect = 3.6 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH + + V+ N+ L CH + + Sbjct: 41 VIPHSIEGYQLSVNANRCLECHRRQYS 67 >1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} (A:1-153) Length = 153 Score = 26.3 bits (58), Expect = 7.6 Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 353 EISQWIRDDVFQAQREG-KYIILFADDIDRFSSIDQKRM 390 EI + + + G + L ++D D ID +++ Sbjct: 84 EIKSYDVEARMDYVKRGAANLALISEDPDLMDGIDSQKL 122 >1wpi_A YKR049C, hypothetical 15.6 kDa protein in NAP1-TRK2 intergenic region; structural genomics, OCSP, NESG, protein structure initiative; NMR {Saccharomyces cerevisiae} (A:) Length = 133 Score = 26.3 bits (58), Expect = 7.6 Identities = 7/49 (14%), Positives = 18/49 (36%), Gaps = 10/49 (20%) Query: 390 MFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYNINK-NSKNEF 437 ++ Q + ++FT S+ +S + + K + + F Sbjct: 3 FWKTLQRQPRTISLFTNDIASNIKSQ---------KCLQLLKGDVSHRF 42 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 26.3 bits (58), Expect = 8.4 Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 4/18 (22%) Query: 221 FFRGLGSQEYIGNRPCRD 238 F+RG+ Q + P RD Sbjct: 16 FYRGMTMQVAV---P-RD 29 >2nyy_A Botulinum neurotoxin type A; neurotoxin, FAB, protein antibody complex, toxin/immune system complex; 2.61A {Clostridium botulinum} PDB: 2nz9_A 3bta_A (A:874-1098) Length = 225 Score = 26.2 bits (56), Expect = 9.0 Identities = 19/194 (9%), Positives = 52/194 (26%), Gaps = 15/194 (7%) Query: 221 FFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQR 280 F S+ + + ++ + +I + +I ++ Sbjct: 42 LFNLESSKIEVILKNAIVYNSMYENFSTSFWI--RIPKYFNSISLNNEYTIINCMENNSG 99 Query: 281 YRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHIS 340 ++ +GE + + M + + + W + + Sbjct: 100 WKVSLNYGEIIWTLQDTQEIKQRVVFK------YSQMINISDYINRWIFVTIT-----NN 148 Query: 341 KQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSS--IDQKRMFEKFLTQS 398 + + NG I Q ++ + D I +F+K L + Sbjct: 149 RLNNSKIYINGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYFNLFDKELNEK 208 Query: 399 KISTIFTTRFTSSP 412 +I ++ + S Sbjct: 209 EIKDLYDNQSNSGI 222 >1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} (A:) Length = 123 Score = 26.4 bits (58), Expect = 9.1 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH N + +VN+ LNCH + Sbjct: 40 MVPHSVANYQVTKNVNQCLNCHSPENS 66 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,568,453 Number of extensions: 162595 Number of successful extensions: 490 Number of sequences better than 10.0: 1 Number of HSP's gapped: 490 Number of HSP's successfully gapped: 15 Length of query: 475 Length of database: 4,956,049 Length adjustment: 92 Effective length of query: 383 Effective length of database: 1,845,989 Effective search space: 707013787 Effective search space used: 707013787 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 56 (26.2 bits)