RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780291|ref|YP_003064704.1| hypothetical protein
CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
(475 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 73.4 bits (180), Expect = 1e-13
Identities = 86/513 (16%), Positives = 149/513 (29%), Gaps = 208/513 (40%)
Query: 60 HGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQI---KKESSINYQ----GK 112
H + + L ++ T V LIKN + + A+ KK +S ++ G
Sbjct: 102 HALA-----AKLLQENDTTLVKTK---ELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153
Query: 113 IPL-----SQG---TYLN----LHAVYHVPLNSLERILLPHKQNMDIVVDVNKILN---- 156
L QG Y L+ YH L + D++ + L+
Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYH-VL--VG----------DLIKFSAETLSELIR 200
Query: 157 -------CHHKGIAVIADPW-----------YKADTPM------------FVEAINSLKS 186
+G+ ++ W Y P+ +V L
Sbjct: 201 TTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 187 SKNIIL-----------GILTGDMTQSSTTKELKRFYN--IYSLKFPFFRGLGSQEYIGN 233
+ + G++T + + E F+ ++ FF G+ E N
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPN 316
Query: 234 RPCRDPYTLTPSIY------GCAF----IAINDISQ--------QINDHYP---QIKSIK 272
+L PSI ++I++++Q + N H P Q+ I
Sbjct: 317 ------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EIS 369
Query: 273 EFNGDSQRYRN-------RSWHG-----ETYSISISGSQSYSWNIDNVHFIQ--ANYSM- 317
NG +N +S +G QS + F + +S
Sbjct: 370 LVNGA----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS------RIPFSERKLKFSNR 419
Query: 318 -------FHSVYFNDEWSNIFTVAVPEH--ISKQDL--PS-HVSNGS---EISQWIRDDV 362
FHS I V + + +D+ P +GS +S I + +
Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 363 FQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTI--F-----------TTRFT 409
+ + +E TQ K + I F T R
Sbjct: 480 VDC--------IIRLPVK----------WET-TTQFKATHILDFGPGGASGLGVLTHR-- 518
Query: 410 SSPESYIKDSTGRPVRVYNI-----NKNSKNEF 437
KD TG VRV I + N +++
Sbjct: 519 ------NKDGTG--VRV--IVAGTLDINPDDDY 541
Score = 52.3 bits (125), Expect = 2e-07
Identities = 74/543 (13%), Positives = 132/543 (24%), Gaps = 229/543 (42%)
Query: 28 PLIITL--ITISTTCANILYHRASIEASADEALNHGIVLLCKDSDLTPQDITP--PVLKD 83
PL ++ + + AS ++ L + ++ D P P +
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS--QLQEQFNKI----LPEPTEGFAADDEPTTPA--E 59
Query: 84 LETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTYLN-LHAVYHVPLNSLERILLPHK 142
L + + P G + L+ L E L
Sbjct: 60 LVGKFL--GYVSSLVE--------------PSKVGQFDQVLNLC----LTEFENCYL--- 96
Query: 143 QNMDI--------------VVDVNKILNCHHKGIAVIADPWYKADTPMFVEAINSLKSSK 188
+ DI +V +++ + + P+ K A+ +
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ- 155
Query: 189 NIILGILTGDMTQSSTT---KELKRFYNIYSLKFPFFRGLGSQEYIG------NRPCRDP 239
++ I G Q +T +EL+ Y Y + I + R
Sbjct: 156 --LVAIFGG---QGNTDDYFEELRDLYQTYH---VLVG-----DLIKFSAETLSELIRTT 202
Query: 240 YTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSW--HGET-----Y- 291
+ Q +I W + Y
Sbjct: 203 -------------------LDAEKVFTQGLNIL------------EWLENPSNTPDKDYL 231
Query: 292 -SISIS----GSQSYSWNIDNVHFIQ-ANYSMFHSVYFNDEWSNIFTVAVPEHISKQ--- 342
SI IS G IQ A+Y V +
Sbjct: 232 LSIPISCPLIG------------VIQLAHY------------------VVTAKLLGFTPG 261
Query: 343 DLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSK--I 400
+L S++ + SQ + V I D +E F + I
Sbjct: 262 ELRSYLKGATGHSQGL---VTAV------AIAETDS------------WESFFVSVRKAI 300
Query: 401 STIF--TTR----F--TSSPESYIKDST----GRP-----VR----------VYNINK-- 431
+ +F R + TS P S ++DS G P + V N
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360
Query: 432 -----------NSKNEFIL---------LEMTPHYINVTAYERRGKVPHITRKMS----- 466
N ++ L +T + + ++P RK+
Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
Query: 467 -PI 468
P+
Sbjct: 421 LPV 423
Score = 36.5 bits (84), Expect = 0.013
Identities = 44/273 (16%), Positives = 76/273 (27%), Gaps = 130/273 (47%)
Query: 21 ILTAIIIPLIIT---LITISTTCANIL----------YHRASIEASA-DEALNHG----- 61
++TA+ I + +L Y S+ S +++L +
Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 62 ----IVLLCKDSDLT---------------PQD---------------IT-PPV-LKDLE 85
I S+LT P ++ PP L L
Sbjct: 337 PMLSI------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 86 TSLIKNDFSIKEAAQIKKESSINYQGKIPLSQ------GTYLNLHAVYHVPL--NSLERI 137
+L K K S ++ Q +IP S+ +L + + +H L + + I
Sbjct: 391 LTLRK----------AKAPSGLD-QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439
Query: 138 L--LPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADT--------------PMFVEAI 181
L ++ + I I V Y DT V+ I
Sbjct: 440 NKDLVKN---NVSFNAKDI------QIPV-----Y--DTFDGSDLRVLSGSISERIVDCI 483
Query: 182 NSLK---------SSKNII---------LGILT 196
L + +I+ LG+LT
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, pharmaceutical,
metalloprotease, ganglioside, metal-binding, zinc,
protease, membrane; HET: BGC GAL SIA NGA; 1.6A
{Clostridium botulinum} PDB: 2vua_A 3fuo_A
Length = 444
Score = 33.5 bits (76), Expect = 0.090
Identities = 32/236 (13%), Positives = 71/236 (30%), Gaps = 22/236 (9%)
Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270
F I + F S+ + + ++ + +I I I+
Sbjct: 53 FDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIPKYFNSIS-------L 105
Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330
E+ + N W I + + I + + + + + W +
Sbjct: 106 NNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQM-INISDYINRWIFV 164
Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDR--FSSIDQK 388
+ SK + NG I Q ++ + D + I
Sbjct: 165 TITNNRLNNSKIYI-----NGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYF 219
Query: 389 RMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILL 440
+F+K L + +I ++ S +KD G ++ Y +N N+++ +
Sbjct: 220 NLFDKELNEKEIKDLY---DNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDV 272
>1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A
{Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A
1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A*
1yxw_A* 1yyn_A* 1diw_A*
Length = 452
Score = 32.7 bits (74), Expect = 0.16
Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 18/201 (8%)
Query: 260 QINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANY---- 315
+++ + + E++ S ++ G +S+S+ G+ D+ ++
Sbjct: 97 KVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDL 156
Query: 316 SMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILF 375
+ Y ++W I + + NG + + + + +
Sbjct: 157 PDKFNAYLANKWVFITIT-----NDRLSSANLYINGVLMGSAEITGLGAIREDNNITLKL 211
Query: 376 ADDIDR--FSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVR----VYNI 429
+ + SID+ R+F K L +I ++ + ++++D G P+R Y I
Sbjct: 212 DRCNNNNQYVSIDKFRIFCKALNPKEIEKLY---TSYLSITFLRDFWGNPLRYDTEYYLI 268
Query: 430 NKNSKNEFILLEMTPHYINVT 450
S ++ + L+ Y+ +T
Sbjct: 269 PVASSSKDVQLKNITDYMYLT 289
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease,
receptor, secreted, binding domain, metalloprotease;
1.90A {Clostridium botulinum}
Length = 482
Score = 32.8 bits (74), Expect = 0.17
Identities = 33/254 (12%), Positives = 75/254 (29%), Gaps = 19/254 (7%)
Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270
F +I + +F S ++ + ++ + Y Q +
Sbjct: 81 FNDIGNGQFKLNNSENSNITAHQSKFVVYDSMFDNFSINFWVRTPKYNNNDIQTYLQNEY 140
Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330
+ S G ++ + S +I + I+ N S + ++W +I
Sbjct: 141 TIISCIKNDSGWKVSIKGNRIIWTLIDVNAKSKSIFFEYSIKDNISDY-----INKWFSI 195
Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRF--SSIDQK 388
+ + NGS ++ + + D I
Sbjct: 196 TIT-----NDRLGNANIYINGSLKKSEKILNLDRINSSNDIDFKLINCTDTTKFVWIKDF 250
Query: 389 RMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILLEMTP 444
+F + L +++S+++ + S + +KD G P+R Y N+ +N +I
Sbjct: 251 NIFGRELNATEVSSLY---WIQSSTNTLKDFWGNPLRYDTQYYLFNQGMQNIYIKYFSKA 307
Query: 445 HYINVTAYERRGKV 458
Sbjct: 308 SMGETAPRTNFNNA 321
>3fuq_A BONT/F (neurotoxin type F); botulinum neurotoxin, ganglioside, SV2,
receptor binding; 2.10A {Clostridium botulinum}
Length = 417
Score = 32.8 bits (74), Expect = 0.17
Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 20/243 (8%)
Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270
Y+ +F + S+ I + ++ I ++N +
Sbjct: 38 IYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTII 97
Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330
N +S + IS++ ++ D Q + + ++ N
Sbjct: 98 DCIRNNNSG-----------WKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINK 146
Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFS-SIDQKR 389
+ + + ++ NG+ I + ++ + D I +
Sbjct: 147 WIFVTITNNRLGNSRIYI-NGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFK 205
Query: 390 MFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILLEMTPH 445
+F+ L +++I T++ S +KD G + Y +N ++ I
Sbjct: 206 VFDTELGKTEIETLY---SDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFL 262
Query: 446 YIN 448
IN
Sbjct: 263 NIN 265
>3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily,
lyase inhibitor; 2.40A {Mus musculus}
Length = 687
Score = 31.4 bits (70), Expect = 0.51
Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 8/98 (8%)
Query: 325 DEWSNIFTVAVPEH--ISKQDLPSHVSNGSEISQWI------RDDVFQAQREGKYIILFA 376
E + VP S++D V Q + +FQ +LF+
Sbjct: 581 TEAQSCHLARVPNRAVFSRKDKADFVRRILFNQQELFGRNGFEYMMFQMFESSAKDLLFS 640
Query: 377 DDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414
DD + S++ K ++ +L ++ + R S E
Sbjct: 641 DDTECLSNLQDKTTYKTYLGPQYLTLMDNFRQCLSSEL 678
>1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS,
DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP:
d.287.1.2 d.287.1.2
Length = 406
Score = 30.0 bits (66), Expect = 1.1
Identities = 13/136 (9%), Positives = 38/136 (27%), Gaps = 2/136 (1%)
Query: 197 GDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYG-CAFIAIN 255
+ + L++ K+ +F G ++ T++ + G C ++ +
Sbjct: 42 DSLFDLKKGEMLEKELITPEGKYEYFNGGVKNSGRTDKFNTFKNTISVIVGGSCGYVRLA 101
Query: 256 DISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANY 315
D + + + D ++ + + I + NI +
Sbjct: 102 DKNFFCGQSNCTLNLLDPLELD-LKFAYYALKSQQERIEALAFGTTIQNIRISDLKELEI 160
Query: 316 SMFHSVYFNDEWSNIF 331
+ +N
Sbjct: 161 PFTSNKNEQHAIANTL 176
>1cb6_A Protein (lactoferrin); iron transport, apolactoferrin,
conformational change; 2.00A {Homo sapiens} SCOP:
c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A
1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A
1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A
1i6q_A 1jw1_A ...
Length = 691
Score = 29.6 bits (66), Expect = 1.7
Identities = 11/56 (19%), Positives = 23/56 (41%)
Query: 359 RDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414
D F + +LF D+ + + + K +EK+L ++ I + S+
Sbjct: 627 CPDKFCLFQSETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPL 682
>1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate
structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP:
c.94.1.2 c.94.1.2 PDB: 1lfc_A
Length = 689
Score = 29.6 bits (66), Expect = 1.7
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414
D F + +LF D+ + + + + +E++L ++ I + S+
Sbjct: 627 DKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPL 680
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase,
metalloprotein, metallophosphoesterase, protein
structure initiative; 1.70A {Danio rerio} SCOP:
d.159.1.12
Length = 322
Score = 28.9 bits (63), Expect = 2.6
Identities = 22/321 (6%), Positives = 75/321 (23%), Gaps = 43/321 (13%)
Query: 162 IAVIADP-----------------WYKADTPMFVEAINSLKSSKNIILGILTGDMTQSST 204
+IAD +Y+ + +A+ + + + + GD+
Sbjct: 8 FGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR-ERVQCVVQLGDIIDGHN 66
Query: 205 TKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQ-QIND 263
+ + ++ C + + + ++N
Sbjct: 67 RRRDASDRALDTVMAEL------------DACSVDVHHVWGNHEFYNFSRPSLLSSRLNS 114
Query: 264 HYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYF 323
Y + + + S + +S
Sbjct: 115 AQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQH 174
Query: 324 NDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFA------- 376
N ++ V + ++ + + + QW+ + + + + +++F+
Sbjct: 175 NHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPC 234
Query: 377 DDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYN---INKNS 433
+ + + + + + DS+G
Sbjct: 235 AADPICLAWNHEAVLSVLRSHQSVLCFIA--GHDHDGGRCTDSSGAQHITLEGVIETPPH 292
Query: 434 KNEFILLEMTPHYINVTAYER 454
+ F + + + R
Sbjct: 293 SHAFATAYLYEDRMVMKGRGR 313
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombination, hydrolase; 2.90A {Pyrococcus
furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 28.9 bits (63), Expect = 2.9
Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 16/100 (16%)
Query: 346 SHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFT 405
+ N +SQ + + G++ +L A + E+ L ++ +
Sbjct: 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATS-----------VGEEGLDVPEVDLVVF 443
Query: 406 TRFTSSPESYIKDS--TGR--PVRVYN-INKNSKNEFILL 440
S I+ TGR P RV + K +++E
Sbjct: 444 YEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYW 483
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin
adaptor AP-2 complex...; dishevelled, frizzled
internalization; 3.50A {Mus musculus}
Length = 385
Score = 28.4 bits (63), Expect = 3.1
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 282 RNRSWHGETYSISISGSQSYSWNIDNVHFIQ 312
R+R W T + GS W +V
Sbjct: 26 RDRMWLKITIPNAFLGSDVVDWLYHHVEGFP 56
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase;
oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter
sphaeroides} SCOP: a.138.1.3
Length = 130
Score = 28.7 bits (64), Expect = 3.3
Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
++PH + + V+ N+ L CH + +
Sbjct: 41 VIPHSIEGYQLSVNANRCLECHRRQYS 67
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 28.2 bits (62), Expect = 4.4
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 47 RASIEASADEALNHGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESS 106
+E +E G++ ++ +D+ L +LE L++ D +++ ++++
Sbjct: 23 EEEVEKEEEEVEKKGLLDRILTVEIKEKDVDK-ALDELEIDLLEADVALEVVDALREKIK 81
Query: 107 INYQGK 112
GK
Sbjct: 82 QKLVGK 87
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold,
swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium
tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Length = 330
Score = 27.6 bits (60), Expect = 5.5
Identities = 11/115 (9%), Positives = 26/115 (22%), Gaps = 7/115 (6%)
Query: 178 VEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIY-----SLKFPFFRGLGSQEYIG 232
+E +N + I + TGD+ ++ + L +G+ +
Sbjct: 57 LEQLNQSGLRPDAI--VFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRA 114
Query: 233 NRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWH 287
I+ + + D E +
Sbjct: 115 ELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELA 169
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 27.6 bits (60), Expect = 5.6
Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 7/127 (5%)
Query: 97 EAAQIKKESSINYQGKIPLSQGTYLNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILN 156
+ Q + + G G ++E++ HK N + V I
Sbjct: 165 QHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFP 224
Query: 157 CHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYS 216
H + + + TGD + S+ E KR N
Sbjct: 225 GHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDPSVPSSLAEEKR-QN--- 280
Query: 217 LKFPFFR 223
F R
Sbjct: 281 ---LFLR 284
>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2,
protein structure initiative; 1.80A {Bacteroides
fragilis YCH46}
Length = 249
Score = 27.5 bits (61), Expect = 5.8
Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 74 QDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTYLNLHAVYHVPLNS 133
+D+T + + + E + K S N + L+ V+++P +
Sbjct: 106 EDVTAAYSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKA--LSGKEVHYLPKDK 163
Query: 134 LERILLPHKQNMDIVVDVNKI--LNCHHKGIAVIADPWYKADTPMFVEAINSLKSSKNII 191
LE LP +N DI+ L+ H GIA+ Y + A S K K ++
Sbjct: 164 LEPDGLPWIKNGDIIALTTNTPGLDVSHMGIAI-----YIKGQLHLLHA--SSKEGKVVV 216
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.7 bits (60), Expect = 6.4
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 8/27 (29%)
Query: 81 LKDLETSLIK---ND----FSIKEAAQ 100
LK L+ SL K +D +IK +
Sbjct: 22 LKKLQASL-KLYADDSAPALAIKATME 47
>2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi
class GTPase, cell cycle, GTP-binding, inner membrane,
membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1
c.37.1.10 PDB: 1fts_A
Length = 309
Score = 27.4 bits (60), Expect = 6.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 75 DITPPVLKDLETSLIKNDFSIKEAAQIKKE 104
I + ++LE L+ D ++ +I
Sbjct: 28 KIDDDLFEELEEQLLIADVGVETTRKIITN 57
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A
2ng1_A*
Length = 295
Score = 27.3 bits (60), Expect = 7.1
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 56 EALNHGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKE 104
L I L +T +D+ L+++ +L+ D +++ A +
Sbjct: 7 ARLQEAIGRLRGRGRITEEDLKA-TLREIRRALMDADVNLEVARDFVER 54
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A*
Length = 296
Score = 27.4 bits (60), Expect = 7.3
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 74 QDITPPVLKDLETSLIKNDFSIKEAAQIKKE 104
Q + P L+ E L + K+
Sbjct: 35 QSVLPEPLRKAEKLLQETGIKESTKTNTLKK 65
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic
fragment, nitrate reductase subunit, oxidoreductase;
HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Length = 123
Score = 27.2 bits (60), Expect = 8.3
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163
++PH N + +VN+ LNCH +
Sbjct: 40 MVPHSVANYQVTKNVNQCLNCHSPENS 66
>3ogg_A Botulinum neurotoxin type D; serotype D, receptor binding domain, J
trefoil fold, receptor binding, gangliosides, membrane
to C toxin; 1.65A {Clostridium botulinum}
Length = 414
Score = 26.9 bits (58), Expect = 9.5
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 384 SIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFIL 439
I +F K L+ I+ ++ + IKD G P++ Y IN N + +I
Sbjct: 194 WIRDFNIFSKELSNEDINIVY---EGQILRNVIKDYWGNPLKFDTEYYIINDNYIDRYIA 250
Query: 440 LEMTPHYINV 449
E +
Sbjct: 251 PESNVLVLVQ 260
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.319 0.135 0.395
Gapped
Lambda K H
0.267 0.0420 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,100,172
Number of extensions: 192822
Number of successful extensions: 652
Number of sequences better than 10.0: 1
Number of HSP's gapped: 648
Number of HSP's successfully gapped: 45
Length of query: 475
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 379
Effective length of database: 3,365,806
Effective search space: 1275640474
Effective search space used: 1275640474
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)