RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] (475 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 73.4 bits (180), Expect = 1e-13 Identities = 86/513 (16%), Positives = 149/513 (29%), Gaps = 208/513 (40%) Query: 60 HGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQI---KKESSINYQ----GK 112 H + + L ++ T V LIKN + + A+ KK +S ++ G Sbjct: 102 HALA-----AKLLQENDTTLVKTK---ELIKNYITARIMAKRPFDKKSNSALFRAVGEGN 153 Query: 113 IPL-----SQG---TYLN----LHAVYHVPLNSLERILLPHKQNMDIVVDVNKILN---- 156 L QG Y L+ YH L + D++ + L+ Sbjct: 154 AQLVAIFGGQGNTDDYFEELRDLYQTYH-VL--VG----------DLIKFSAETLSELIR 200 Query: 157 -------CHHKGIAVIADPW-----------YKADTPM------------FVEAINSLKS 186 +G+ ++ W Y P+ +V L Sbjct: 201 TTLDAEKVFTQGLNILE--WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGF 258 Query: 187 SKNIIL-----------GILTGDMTQSSTTKELKRFYN--IYSLKFPFFRGLGSQEYIGN 233 + + G++T + + E F+ ++ FF G+ E N Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGVRCYEAYPN 316 Query: 234 RPCRDPYTLTPSIY------GCAF----IAINDISQ--------QINDHYP---QIKSIK 272 +L PSI ++I++++Q + N H P Q+ I Sbjct: 317 ------TSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-EIS 369 Query: 273 EFNGDSQRYRN-------RSWHG-----ETYSISISGSQSYSWNIDNVHFIQ--ANYSM- 317 NG +N +S +G QS + F + +S Sbjct: 370 LVNGA----KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQS------RIPFSERKLKFSNR 419 Query: 318 -------FHSVYFNDEWSNIFTVAVPEH--ISKQDL--PS-HVSNGS---EISQWIRDDV 362 FHS I V + + +D+ P +GS +S I + + Sbjct: 420 FLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479 Query: 363 FQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTI--F-----------TTRFT 409 + + +E TQ K + I F T R Sbjct: 480 VDC--------IIRLPVK----------WET-TTQFKATHILDFGPGGASGLGVLTHR-- 518 Query: 410 SSPESYIKDSTGRPVRVYNI-----NKNSKNEF 437 KD TG VRV I + N +++ Sbjct: 519 ------NKDGTG--VRV--IVAGTLDINPDDDY 541 Score = 52.3 bits (125), Expect = 2e-07 Identities = 74/543 (13%), Positives = 132/543 (24%), Gaps = 229/543 (42%) Query: 28 PLIITL--ITISTTCANILYHRASIEASADEALNHGIVLLCKDSDLTPQDITP--PVLKD 83 PL ++ + + AS ++ L + ++ D P P + Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS--QLQEQFNKI----LPEPTEGFAADDEPTTPA--E 59 Query: 84 LETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTYLN-LHAVYHVPLNSLERILLPHK 142 L + + P G + L+ L E L Sbjct: 60 LVGKFL--GYVSSLVE--------------PSKVGQFDQVLNLC----LTEFENCYL--- 96 Query: 143 QNMDI--------------VVDVNKILNCHHKGIAVIADPWYKADTPMFVEAINSLKSSK 188 + DI +V +++ + + P+ K A+ + Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ- 155 Query: 189 NIILGILTGDMTQSSTT---KELKRFYNIYSLKFPFFRGLGSQEYIG------NRPCRDP 239 ++ I G Q +T +EL+ Y Y + I + R Sbjct: 156 --LVAIFGG---QGNTDDYFEELRDLYQTYH---VLVG-----DLIKFSAETLSELIRTT 202 Query: 240 YTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSW--HGET-----Y- 291 + Q +I W + Y Sbjct: 203 -------------------LDAEKVFTQGLNIL------------EWLENPSNTPDKDYL 231 Query: 292 -SISIS----GSQSYSWNIDNVHFIQ-ANYSMFHSVYFNDEWSNIFTVAVPEHISKQ--- 342 SI IS G IQ A+Y V + Sbjct: 232 LSIPISCPLIG------------VIQLAHY------------------VVTAKLLGFTPG 261 Query: 343 DLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSK--I 400 +L S++ + SQ + V I D +E F + I Sbjct: 262 ELRSYLKGATGHSQGL---VTAV------AIAETDS------------WESFFVSVRKAI 300 Query: 401 STIF--TTR----F--TSSPESYIKDST----GRP-----VR----------VYNINK-- 431 + +F R + TS P S ++DS G P + V N Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL 360 Query: 432 -----------NSKNEFIL---------LEMTPHYINVTAYERRGKVPHITRKMS----- 466 N ++ L +T + + ++P RK+ Sbjct: 361 PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420 Query: 467 -PI 468 P+ Sbjct: 421 LPV 423 Score = 36.5 bits (84), Expect = 0.013 Identities = 44/273 (16%), Positives = 76/273 (27%), Gaps = 130/273 (47%) Query: 21 ILTAIIIPLIIT---LITISTTCANIL----------YHRASIEASA-DEALNHG----- 61 ++TA+ I + +L Y S+ S +++L + Sbjct: 277 LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336 Query: 62 ----IVLLCKDSDLT---------------PQD---------------IT-PPV-LKDLE 85 I S+LT P ++ PP L L Sbjct: 337 PMLSI------SNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390 Query: 86 TSLIKNDFSIKEAAQIKKESSINYQGKIPLSQ------GTYLNLHAVYHVPL--NSLERI 137 +L K K S ++ Q +IP S+ +L + + +H L + + I Sbjct: 391 LTLRK----------AKAPSGLD-QSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI 439 Query: 138 L--LPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADT--------------PMFVEAI 181 L ++ + I I V Y DT V+ I Sbjct: 440 NKDLVKN---NVSFNAKDI------QIPV-----Y--DTFDGSDLRVLSGSISERIVDCI 483 Query: 182 NSLK---------SSKNII---------LGILT 196 L + +I+ LG+LT Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLT 516 >2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, pharmaceutical, metalloprotease, ganglioside, metal-binding, zinc, protease, membrane; HET: BGC GAL SIA NGA; 1.6A {Clostridium botulinum} PDB: 2vua_A 3fuo_A Length = 444 Score = 33.5 bits (76), Expect = 0.090 Identities = 32/236 (13%), Positives = 71/236 (30%), Gaps = 22/236 (9%) Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270 F I + F S+ + + ++ + +I I I+ Sbjct: 53 FDPIDKNQIQLFNLESSKIEVILKNAIVYNSMYENFSTSFWIRIPKYFNSIS-------L 105 Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 E+ + N W I + + I + + + + + W + Sbjct: 106 NNEYTIINCMENNSGWKVSLNYGEIIWTLQDTQEIKQRVVFKYSQM-INISDYINRWIFV 164 Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDR--FSSIDQK 388 + SK + NG I Q ++ + D + I Sbjct: 165 TITNNRLNNSKIYI-----NGRLIDQKPISNLGNIHASNNIMFKLDGCRDTHRYIWIKYF 219 Query: 389 RMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILL 440 +F+K L + +I ++ S +KD G ++ Y +N N+++ + Sbjct: 220 NLFDKELNEKEIKDLY---DNQSNSGILKDFWGDYLQYDKPYYMLNLYDPNKYVDV 272 >1a8d_A Tetanus neurotoxin; clostridial, ganglioside binding region; 1.57A {Clostridium tetani} SCOP: b.29.1.6 b.42.4.2 PDB: 1af9_A 1fv3_A* 1fv2_A* 3hmy_A* 3hn1_A* 1d0h_A* 1dfq_A* 1dll_A* 1yxw_A* 1yyn_A* 1diw_A* Length = 452 Score = 32.7 bits (74), Expect = 0.16 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 18/201 (8%) Query: 260 QINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANY---- 315 +++ + + E++ S ++ G +S+S+ G+ D+ ++ Sbjct: 97 KVSASHLEQYGTNEYSIISSMKKHSLSIGSGWSVSLKGNNLIWTLKDSAGEVRQITFRDL 156 Query: 316 SMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILF 375 + Y ++W I + + NG + + + + + Sbjct: 157 PDKFNAYLANKWVFITIT-----NDRLSSANLYINGVLMGSAEITGLGAIREDNNITLKL 211 Query: 376 ADDIDR--FSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVR----VYNI 429 + + SID+ R+F K L +I ++ + ++++D G P+R Y I Sbjct: 212 DRCNNNNQYVSIDKFRIFCKALNPKEIEKLY---TSYLSITFLRDFWGNPLRYDTEYYLI 268 Query: 430 NKNSKNEFILLEMTPHYINVT 450 S ++ + L+ Y+ +T Sbjct: 269 PVASSSKDVQLKNITDYMYLT 289 >2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease, receptor, secreted, binding domain, metalloprotease; 1.90A {Clostridium botulinum} Length = 482 Score = 32.8 bits (74), Expect = 0.17 Identities = 33/254 (12%), Positives = 75/254 (29%), Gaps = 19/254 (7%) Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270 F +I + +F S ++ + ++ + Y Q + Sbjct: 81 FNDIGNGQFKLNNSENSNITAHQSKFVVYDSMFDNFSINFWVRTPKYNNNDIQTYLQNEY 140 Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 + S G ++ + S +I + I+ N S + ++W +I Sbjct: 141 TIISCIKNDSGWKVSIKGNRIIWTLIDVNAKSKSIFFEYSIKDNISDY-----INKWFSI 195 Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRF--SSIDQK 388 + + NGS ++ + + D I Sbjct: 196 TIT-----NDRLGNANIYINGSLKKSEKILNLDRINSSNDIDFKLINCTDTTKFVWIKDF 250 Query: 389 RMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILLEMTP 444 +F + L +++S+++ + S + +KD G P+R Y N+ +N +I Sbjct: 251 NIFGRELNATEVSSLY---WIQSSTNTLKDFWGNPLRYDTQYYLFNQGMQNIYIKYFSKA 307 Query: 445 HYINVTAYERRGKV 458 Sbjct: 308 SMGETAPRTNFNNA 321 >3fuq_A BONT/F (neurotoxin type F); botulinum neurotoxin, ganglioside, SV2, receptor binding; 2.10A {Clostridium botulinum} Length = 417 Score = 32.8 bits (74), Expect = 0.17 Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 20/243 (8%) Query: 211 FYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKS 270 Y+ +F + S+ I + ++ I ++N + Sbjct: 38 IYSTNRNQFGIYSSKPSEVNIAQNNDIIYNGRYQNFSISFWVRIPKYFNKVNLNNEYTII 97 Query: 271 IKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYFNDEWSNI 330 N +S + IS++ ++ D Q + + ++ N Sbjct: 98 DCIRNNNSG-----------WKISLNYNKIIWTLQDTAGNNQKLVFNYTQMISISDYINK 146 Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFS-SIDQKR 389 + + + ++ NG+ I + ++ + D I + Sbjct: 147 WIFVTITNNRLGNSRIYI-NGNLIDEKSISNLGDIHVSDNILFKIVGCNDTRYVGIRYFK 205 Query: 390 MFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFILLEMTPH 445 +F+ L +++I T++ S +KD G + Y +N ++ I Sbjct: 206 VFDTELGKTEIETLY---SDEPDPSILKDFWGNYLLYNKRYYLLNLLRTDKSITQNSNFL 262 Query: 446 YIN 448 IN Sbjct: 263 NIN 265 >3mc2_A Inhibitor of carbonic anhydrase; MICA, transferrin superfamily, lyase inhibitor; 2.40A {Mus musculus} Length = 687 Score = 31.4 bits (70), Expect = 0.51 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 8/98 (8%) Query: 325 DEWSNIFTVAVPEH--ISKQDLPSHVSNGSEISQWI------RDDVFQAQREGKYIILFA 376 E + VP S++D V Q + +FQ +LF+ Sbjct: 581 TEAQSCHLARVPNRAVFSRKDKADFVRRILFNQQELFGRNGFEYMMFQMFESSAKDLLFS 640 Query: 377 DDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414 DD + S++ K ++ +L ++ + R S E Sbjct: 641 DDTECLSNLQDKTTYKTYLGPQYLTLMDNFRQCLSSEL 678 >1ydx_A Type I restriction enzyme specificity protein Mg438; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2 Length = 406 Score = 30.0 bits (66), Expect = 1.1 Identities = 13/136 (9%), Positives = 38/136 (27%), Gaps = 2/136 (1%) Query: 197 GDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYG-CAFIAIN 255 + + L++ K+ +F G ++ T++ + G C ++ + Sbjct: 42 DSLFDLKKGEMLEKELITPEGKYEYFNGGVKNSGRTDKFNTFKNTISVIVGGSCGYVRLA 101 Query: 256 DISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANY 315 D + + + D ++ + + I + NI + Sbjct: 102 DKNFFCGQSNCTLNLLDPLELD-LKFAYYALKSQQERIEALAFGTTIQNIRISDLKELEI 160 Query: 316 SMFHSVYFNDEWSNIF 331 + +N Sbjct: 161 PFTSNKNEQHAIANTL 176 >1cb6_A Protein (lactoferrin); iron transport, apolactoferrin, conformational change; 2.00A {Homo sapiens} SCOP: c.94.1.2 c.94.1.2 PDB: 1bka_A 1b0l_A 1lfi_A* 1fck_A 1lcf_A* 2bjj_X* 1lfh_A 1n76_A 1lfg_A* 1sqy_A* 1b1x_A 1b7u_A 1b7z_A 1i6b_A 1qjm_A 3cr9_A* 1f9b_A* 1dtz_A 1i6q_A 1jw1_A ... Length = 691 Score = 29.6 bits (66), Expect = 1.7 Identities = 11/56 (19%), Positives = 23/56 (41%) Query: 359 RDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414 D F + +LF D+ + + + K +EK+L ++ I + S+ Sbjct: 627 CPDKFCLFQSETKNLLFNDNTECLARLHGKTTYEKYLGPQYVAGITNLKKCSTSPL 682 >1blf_A Lactoferrin; transferrin, iron-binding protein, carbohydrate structure; HET: NAG BMA MAN; 2.80A {Bos taurus} SCOP: c.94.1.2 c.94.1.2 PDB: 1lfc_A Length = 689 Score = 29.6 bits (66), Expect = 1.7 Identities = 9/54 (16%), Positives = 23/54 (42%) Query: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPES 414 D F + +LF D+ + + + + +E++L ++ I + S+ Sbjct: 627 DKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYLGTEYVTAIANLKKCSTSPL 680 >2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12 Length = 322 Score = 28.9 bits (63), Expect = 2.6 Identities = 22/321 (6%), Positives = 75/321 (23%), Gaps = 43/321 (13%) Query: 162 IAVIADP-----------------WYKADTPMFVEAINSLKSSKNIILGILTGDMTQSST 204 +IAD +Y+ + +A+ + + + + GD+ Sbjct: 8 FGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRR-ERVQCVVQLGDIIDGHN 66 Query: 205 TKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPYTLTPSIYGCAFIAINDISQ-QIND 263 + + ++ C + + + ++N Sbjct: 67 RRRDASDRALDTVMAEL------------DACSVDVHHVWGNHEFYNFSRPSLLSSRLNS 114 Query: 264 HYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQSYSWNIDNVHFIQANYSMFHSVYF 323 Y + + + S + +S Sbjct: 115 AQRTGTDTGSDLIGDDIYAYEFSPAPNFRFVLLDAYDLSVIGREEESEKHTHSWRILTQH 174 Query: 324 NDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFA------- 376 N ++ V + ++ + + + QW+ + + + + +++F+ Sbjct: 175 NHNLQDLNLPPVSVGLEQRFVKFNGGFSEQQLQWLDAVLTLSDHKQERVLIFSHLPVHPC 234 Query: 377 DDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRVYN---INKNS 433 + + + + + + DS+G Sbjct: 235 AADPICLAWNHEAVLSVLRSHQSVLCFIA--GHDHDGGRCTDSSGAQHITLEGVIETPPH 292 Query: 434 KNEFILLEMTPHYINVTAYER 454 + F + + + R Sbjct: 293 SHAFATAYLYEDRMVMKGRGR 313 >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombination, hydrolase; 2.90A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.19 c.37.1.19 Length = 494 Score = 28.9 bits (63), Expect = 2.9 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 16/100 (16%) Query: 346 SHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFT 405 + N +SQ + + G++ +L A + E+ L ++ + Sbjct: 395 ASKENDRGLSQREQKLILDEFARGEFNVLVATS-----------VGEEGLDVPEVDLVVF 443 Query: 406 TRFTSSPESYIKDS--TGR--PVRVYN-INKNSKNEFILL 440 S I+ TGR P RV + K +++E Sbjct: 444 YEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEAYYW 483 >3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus} Length = 385 Score = 28.4 bits (63), Expect = 3.1 Identities = 8/31 (25%), Positives = 11/31 (35%) Query: 282 RNRSWHGETYSISISGSQSYSWNIDNVHFIQ 312 R+R W T + GS W +V Sbjct: 26 RDRMWLKITIPNAFLGSDVVDWLYHHVEGFP 56 >1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3 Length = 130 Score = 28.7 bits (64), Expect = 3.3 Identities = 7/27 (25%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH + + V+ N+ L CH + + Sbjct: 41 VIPHSIEGYQLSVNANRCLECHRRQYS 67 >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* Length = 328 Score = 28.2 bits (62), Expect = 4.4 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 47 RASIEASADEALNHGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESS 106 +E +E G++ ++ +D+ L +LE L++ D +++ ++++ Sbjct: 23 EEEVEKEEEEVEKKGLLDRILTVEIKEKDVDK-ALDELEIDLLEADVALEVVDALREKIK 81 Query: 107 INYQGK 112 GK Sbjct: 82 QKLVGK 87 >3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, hydrolase; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A Length = 330 Score = 27.6 bits (60), Expect = 5.5 Identities = 11/115 (9%), Positives = 26/115 (22%), Gaps = 7/115 (6%) Query: 178 VEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIY-----SLKFPFFRGLGSQEYIG 232 +E +N + I + TGD+ ++ + L +G+ + Sbjct: 57 LEQLNQSGLRPDAI--VFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMGNHDDRA 114 Query: 233 NRPCRDPYTLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWH 287 I+ + + D E + Sbjct: 115 ELRKFLLDEAPSMAPLDRVCMIDGLRIIVLDTSVPGHHHGEIRASQLGWLAEELA 169 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Length = 311 Score = 27.6 bits (60), Expect = 5.6 Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 7/127 (5%) Query: 97 EAAQIKKESSINYQGKIPLSQGTYLNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILN 156 + Q + + G G ++E++ HK N + V I Sbjct: 165 QHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFP 224 Query: 157 CHHKGIAVIADPWYKADTPMFVEAINSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYS 216 H + + + TGD + S+ E KR N Sbjct: 225 GHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTGDPSVPSSLAEEKR-QN--- 280 Query: 217 LKFPFFR 223 F R Sbjct: 281 ---LFLR 284 >2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Bacteroides fragilis YCH46} Length = 249 Score = 27.5 bits (61), Expect = 5.8 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 11/120 (9%) Query: 74 QDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTYLNLHAVYHVPLNS 133 +D+T + + + E + K S N + L+ V+++P + Sbjct: 106 EDVTAAYSPFKQKLSLSYMSTHPELYKSLKNSPENVAQMAKYEKA--LSGKEVHYLPKDK 163 Query: 134 LERILLPHKQNMDIVVDVNKI--LNCHHKGIAVIADPWYKADTPMFVEAINSLKSSKNII 191 LE LP +N DI+ L+ H GIA+ Y + A S K K ++ Sbjct: 164 LEPDGLPWIKNGDIIALTTNTPGLDVSHMGIAI-----YIKGQLHLLHA--SSKEGKVVV 216 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.7 bits (60), Expect = 6.4 Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 8/27 (29%) Query: 81 LKDLETSLIK---ND----FSIKEAAQ 100 LK L+ SL K +D +IK + Sbjct: 22 LKKLQASL-KLYADDSAPALAIKATME 47 >2qy9_A Cell division protein FTSY; SRP receptor, protein targeting, simibi class GTPase, cell cycle, GTP-binding, inner membrane, membrane; 1.90A {Escherichia coli} SCOP: a.24.13.1 c.37.1.10 PDB: 1fts_A Length = 309 Score = 27.4 bits (60), Expect = 6.6 Identities = 6/30 (20%), Positives = 13/30 (43%) Query: 75 DITPPVLKDLETSLIKNDFSIKEAAQIKKE 104 I + ++LE L+ D ++ +I Sbjct: 28 KIDDDLFEELEEQLLIADVGVETTRKIITN 57 >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 3ng1_A 1ffh_A 2ng1_A* Length = 295 Score = 27.3 bits (60), Expect = 7.1 Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 56 EALNHGIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKE 104 L I L +T +D+ L+++ +L+ D +++ A + Sbjct: 7 ARLQEAIGRLRGRGRITEEDLKA-TLREIRRALMDADVNLEVARDFVER 54 >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* Length = 296 Score = 27.4 bits (60), Expect = 7.3 Identities = 6/31 (19%), Positives = 10/31 (32%) Query: 74 QDITPPVLKDLETSLIKNDFSIKEAAQIKKE 104 Q + P L+ E L + K+ Sbjct: 35 QSVLPEPLRKAEKLLQETGIKESTKTNTLKK 65 >1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3 Length = 123 Score = 27.2 bits (60), Expect = 8.3 Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 138 LLPHK-QNMDIVVDVNKILNCHHKGIA 163 ++PH N + +VN+ LNCH + Sbjct: 40 MVPHSVANYQVTKNVNQCLNCHSPENS 66 >3ogg_A Botulinum neurotoxin type D; serotype D, receptor binding domain, J trefoil fold, receptor binding, gangliosides, membrane to C toxin; 1.65A {Clostridium botulinum} Length = 414 Score = 26.9 bits (58), Expect = 9.5 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 7/70 (10%) Query: 384 SIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV----YNINKNSKNEFIL 439 I +F K L+ I+ ++ + IKD G P++ Y IN N + +I Sbjct: 194 WIRDFNIFSKELSNEDINIVY---EGQILRNVIKDYWGNPLKFDTEYYIINDNYIDRYIA 250 Query: 440 LEMTPHYINV 449 E + Sbjct: 251 PESNVLVLVQ 260 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.319 0.135 0.395 Gapped Lambda K H 0.267 0.0420 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 4,100,172 Number of extensions: 192822 Number of successful extensions: 652 Number of sequences better than 10.0: 1 Number of HSP's gapped: 648 Number of HSP's successfully gapped: 45 Length of query: 475 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 379 Effective length of database: 3,365,806 Effective search space: 1275640474 Effective search space used: 1275640474 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.9 bits)