BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780291|ref|YP_003064704.1| hypothetical protein
CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62]
(475 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 475
Score = 981 bits (2537), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/475 (100%), Positives = 475/475 (100%)
Query: 1 MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH 60
MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH
Sbjct: 1 MSKTKHLKKTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNH 60
Query: 61 GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY 120
GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY
Sbjct: 61 GIVLLCKDSDLTPQDITPPVLKDLETSLIKNDFSIKEAAQIKKESSINYQGKIPLSQGTY 120
Query: 121 LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA 180
LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA
Sbjct: 121 LNLHAVYHVPLNSLERILLPHKQNMDIVVDVNKILNCHHKGIAVIADPWYKADTPMFVEA 180
Query: 181 INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY 240
INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY
Sbjct: 181 INSLKSSKNIILGILTGDMTQSSTTKELKRFYNIYSLKFPFFRGLGSQEYIGNRPCRDPY 240
Query: 241 TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS 300
TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS
Sbjct: 241 TLTPSIYGCAFIAINDISQQINDHYPQIKSIKEFNGDSQRYRNRSWHGETYSISISGSQS 300
Query: 301 YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD 360
YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD
Sbjct: 301 YSWNIDNVHFIQANYSMFHSVYFNDEWSNIFTVAVPEHISKQDLPSHVSNGSEISQWIRD 360
Query: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST 420
DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST
Sbjct: 361 DVFQAQREGKYIILFADDIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDST 420
Query: 421 GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR 475
GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR
Sbjct: 421 GRPVRVYNINKNSKNEFILLEMTPHYINVTAYERRGKVPHITRKMSPIDLLPKQR 475
>gi|254780934|ref|YP_003065347.1| hypothetical protein CLIBASIA_04165 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 374
Score = 35.4 bits (80), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 9 KTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEALNHG 61
+ F + KG +TILTAI +P+I ++ + ++I + + + + D +L H
Sbjct: 9 RNFFYNYKGGMTILTAIFLPIIFLVLGMIIEVSHIFFMKTVLHSMIDRSLVHA 61
>gi|254781108|ref|YP_003065521.1| von Willebrand factor type A [Candidatus Liberibacter asiaticus
str. psy62]
Length = 398
Score = 32.7 bits (73), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 22 LTAIIIPLIITLITISTTCANILYHRASIEASADEALNHGIVLLCKDSDL----TPQDIT 77
+TAIII + IT + A+I+Y R ++++ D A+ G + D + T +D T
Sbjct: 1 MTAIIISVCFLFITYAIDLAHIMYIRNQMQSALDAAVLSGCASIVSDRTIKDPTTKKDQT 60
Query: 78 PPVLKDLETSLIKNDFSIKE-AAQIKKESSIN 108
+ K +K I+E A I +++ IN
Sbjct: 61 STIFKKQIKKHLKQGSYIRENAGDIAQKAQIN 92
>gi|254780833|ref|YP_003065246.1| hypothetical protein CLIBASIA_03630 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 31.2 bits (69), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 9 KTIFLSKKGNITILTAIIIPLIITLITISTTCANILYHRASIEASADEAL 58
+ F + KG+I+ILTAI++P+I ++ + ++ + +A + D +L
Sbjct: 7 RNFFYNCKGSISILTAILLPVIFIVMGLVIETSHKFFVKAKLHYILDHSL 56
>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 26.6 bits (57), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 411 SPESYIKDS--TGRPVRVYNINKNSKNEFILLEMTPHYINVTAY 452
+PE Y+K +G +V+ +N+N +NE + P + + AY
Sbjct: 231 APELYLKRVLISGLTDQVFELNRNFRNEGVSSRHNPEFTMIEAY 274
>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 511
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 8/37 (21%)
Query: 228 QEYIGNRPCRDPYTLTPSIYGCAFIAINDISQQINDH 264
+E + PC DPY P I GC DI+++ D+
Sbjct: 303 EEALNREPCPDPY--APLIMGC------DIAEEGGDN 331
>gi|254780685|ref|YP_003065098.1| flagellar basal body rod protein FlgF [Candidatus Liberibacter
asiaticus str. psy62]
Length = 243
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 304 NIDNVHF--IQANYSMFHSVYFNDEWSNI-FTVAVPEHISKQDLPSHVSNGSEISQWIRD 360
N D V F I+ +S ND I F + E++SK+ + S +S G+E+ +
Sbjct: 28 NTDTVGFRTIKVKFSEVVGAIKNDIDQKISFVASGKEYLSKE-VGSFISTGTELDFALEG 86
Query: 361 DVFQAQREGKYIILFADDIDRFSSID 386
D + A + IIL D RF D
Sbjct: 87 DAWFALESPRGIILTRD--GRFKVTD 110
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 18/97 (18%)
Query: 331 FTVAVPEHISKQDLPSHVSNGSEISQWIRDDVFQAQREGKYIILFADDIDRFSSIDQKRM 390
FT + EH+ + V+ E+SQ R + Q R+G+ + A D+
Sbjct: 260 FTKVLAEHLFQV-----VALSGELSQQERSNALQMMRDGRARVCIATDV----------- 303
Query: 391 FEKFLTQSKISTIFTTRFTSSPESYIKDS--TGRPVR 425
+ + + + +S+PE+ + S TGR R
Sbjct: 304 AARGIDLPDLELVIHAELSSNPENLLHRSGRTGRAGR 340
>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 23.9 bits (50), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 179 EAINSLKSSKNIILGILTGDMTQSSTTKELKR 210
E I + II+ I+TG+M Q+ K L+R
Sbjct: 339 EFIKKYTQNTQIIVEIITGNMPQAHRRKALER 370
>gi|254781145|ref|YP_003065558.1| hypothetical protein CLIBASIA_05245 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 350
Score = 23.5 bits (49), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 378 DIDRFSSIDQKRMFEKFLTQSKISTIFTTRFTSSPESYIKDSTGRPVRV 426
+I + ++ ++ + Q++ TI PES + G+P+RV
Sbjct: 188 EIQKIKTVLLRQTLDNLYWQNQPQTIVQEGSIIDPESVLNPQFGKPIRV 236
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 310,360
Number of Sequences: 1233
Number of extensions: 13151
Number of successful extensions: 48
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 40
Number of HSP's gapped (non-prelim): 11
length of query: 475
length of database: 328,796
effective HSP length: 77
effective length of query: 398
effective length of database: 233,855
effective search space: 93074290
effective search space used: 93074290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)