HHsearch alignment for GI: 254780292 and conserved domain: cd00392
>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=100.00 E-value=0 Score=313.23 Aligned_cols=114 Identities=52% Similarity=0.913 Sum_probs=111.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf 69997898745767999999984656521034556688899975101001560121133331157557633630200001
Q gi|254780292|r 16 WILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILA 95 (155)
Q Consensus 16 W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~ 95 (155)
T Consensus 1 w~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~ViViNa~~i~~tG~k~~~k~y~~~~~~~gg~~~~~~~~~~- 79 (114)
T cd00392 1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLH- 79 (114)
T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHEEEECCHHHCEEEEEEECCCCCCCCCCCHHHH-
T ss_conf 9899589993588999999999637578867787689889998326836605312101246750478987347704544-
Q ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 24879999999973089985478999627010789
Q gi|254780292|r 96 GASPTNILKKAIARMLPRGPLARKQMKNLHIYAED 130 (155)
Q Consensus 96 ~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~ 130 (155)
T Consensus 80 ~~~P~~il~~aV~gMLPkn~~gr~~lkrL~vy~G~ 114 (114)
T cd00392 80 PRAPERILKRAVRGMLPKNKLGRAALKRLKVYEGA 114 (114)
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCC
T ss_conf 13989999999986189972399998598882799