HHsearch alignment for GI: 254780292 and conserved domain: cd00392

>cd00392 Ribosomal_L13 Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the polypeptide exit site. It interacts with proteins L3 and L6, and forms an extensive network of interactions with 23S rRNA. L13 has been identified as a homolog of the human breast basic conserved protein 1 (BBC1), a protein identified through its increased expression in breast cancer. L13 expression is also upregulated in a variety of human gastrointestinal cancers, suggesting it may play a role in the etiology of a variety of human malignancies.
Probab=100.00  E-value=0  Score=313.23  Aligned_cols=114  Identities=52%  Similarity=0.913  Sum_probs=111.8

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCC
Q ss_conf             69997898745767999999984656521034556688899975101001560121133331157557633630200001
Q gi|254780292|r   16 WILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTTAKEILA   95 (155)
Q Consensus        16 W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~~~~~~~   95 (155)
T Consensus         1 w~viDA~~~~lGRLAs~iA~~L~GK~kp~y~p~~d~Gd~ViViNa~~i~~tG~k~~~k~y~~~~~~~gg~~~~~~~~~~-   79 (114)
T cd00392           1 WHVIDAKGQVLGRLASKVAKLLLGKHKPTYTPHVDCGDYVVVVNAEKIVITGKKWRQKVYYRHTGYPGGLKNPTAGPLH-   79 (114)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHEEEECCHHHCEEEEEEECCCCCCCCCCCHHHH-
T ss_conf             9899589993588999999999637578867787689889998326836605312101246750478987347704544-


Q ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             24879999999973089985478999627010789
Q gi|254780292|r   96 GASPTNILKKAIARMLPRGPLARKQMKNLHIYAED  130 (155)
Q Consensus        96 ~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~  130 (155)
T Consensus        80 ~~~P~~il~~aV~gMLPkn~~gr~~lkrL~vy~G~  114 (114)
T cd00392          80 PRAPERILKRAVRGMLPKNKLGRAALKRLKVYEGA  114 (114)
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCC
T ss_conf             13989999999986189972399998598882799