HHsearch alignment of GI: 254780292 and MMDB domain: 1vq8_J_
>1vq8_J (J:) 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui}
Probab=100.00 E-value=1.4e-45 Score=288.71 Aligned_cols=127 Identities=22% Similarity=0.321 Sum_probs=118.6
Q ss_pred HHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf 43602006999789874576799999998465652103455668889997510100156012113333115755763363
Q gi|254780292|r 9 SSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKT 88 (155)
Q Consensus 9 ~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~ 88 (155)
+.+++|+||||||+||+||||||.||+.|+ |||+||||||++|++||+||.+|.|++|||||||++..
T Consensus 2 a~~~~r~w~viDA~~~~lGRlAs~iA~~l~------------~Gd~VvVvNa~~i~~tG~k~~~k~y~~ht~~~g~~~~~ 69 (145)
T 1vq8_J 2 SVAEFDADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY 69 (145)
T ss_dssp --CCCCCSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC
T ss_pred CHHHCCCEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEECHHHCCCCCHHHHHHHHEEEECCCCCCCE
T ss_conf 633427639997999873887999999863------------89879999671312257324421110355136885425
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCCCC
Q ss_conf 020000124879999999973089-9854789996270107899971320854761665281312
Q gi|254780292|r 89 TAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNS 152 (155)
Q Consensus 89 ~~~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~kn~ 152 (155)
. +.++|++||++||+|||| ++.+|+.+|+||+||+|++|||++|+|+.+++...++.+.
T Consensus 70 ~-----~~r~P~~ii~~aV~gMLP~k~~~gr~~l~rL~vy~g~~hp~~~~~~~~~~~~~~~~~~~ 129 (145)
T 1vq8_J 70 F-----YPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKF 129 (145)
T ss_dssp C-----CCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSSSCCBCCTTCBCCTTSCCSE
T ss_pred E-----HHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCCCE
T ss_conf 5-----11298899999984516789904789973757807999964456776356641489856