HHsearch results for GI: 254780292 and protein with PDBid: 1vq8_J
>1vq8_J 50S ribosomal protein L13P; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.21.1.1 PDB: 1giy_M 1jj2_I 1k73_K* 1k8a_K* 1k9m_K* 1kc8_K* 1kd1_K* 1kqs_I* 1m1k_K* 1m90_K* 1ml5_m* 1n8r_K* 1nji_K* 1q7y_K* 1q81_K* 1q82_K* 1q86_K* 1qvf_I 1qvg_I 1s72_J* ...
Probab=100.00 E-value=1e-41 Score=264.22 Aligned_cols=123 Identities=23% Similarity=0.379 Sum_probs=111.4
Q ss_pred HHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 36020069997898745767999999984656521034556688899975101001560121133331157557633630
Q gi|254780292|r 10 SEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGYPGGIKKTT 89 (155)
Q Consensus 10 ~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgypGG~k~~~ 89 (155)
++++ +|.||||+|++||||||.||+.|. +||+||||||+++.+||+||.++.||+|+|||||.+..
T Consensus 4 ~~~~-k~ivIDA~~~~lGRLAs~vAk~ll------------~Gd~ViVvNaeki~itG~k~~~k~~y~~~~~~g~~kg~- 69 (145)
T 1vq8_J 4 AEFD-ADVIVDARDCIMGRVASQVAEQAL------------DGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGY- 69 (145)
T ss_dssp CCCC-CSEEEECTTBBHHHHHHHHHHHHH------------TTCCEEEECGGGCEEESCHHHHHHHHHHHHHCCCSSCC-
T ss_pred HHCC-CEEEEECCCCCHHHHHHHHHHHHC------------CCCEEEEEEHHHHEECCCHHHHHHEEEEECCCCCCCCE-
T ss_conf 4537-619997999845888999989854------------89979999848924048616520102464357986632-
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC-CCHHHHHHHHCCCCCCCCCCCHHHCCCEEEEHHHCCCC
Q ss_conf 20000124879999999973089-98547899962701078999713208547616652813
Q gi|254780292|r 90 AKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPK 150 (155)
Q Consensus 90 ~~~~~~~~~P~~il~~aV~gMLP-kn~lgr~~lkrL~vy~g~~Hph~aq~P~~l~~~~~~~k 150 (155)
+++++|++||++||+|||| +|++|+.+|+||+||+|++|||++|+|+..++..+...
T Consensus 70 ----~~~r~P~~il~raVrGMLP~k~~~Gr~~lkrLkvy~G~~h~~~~q~~~~~~l~~~~~~ 127 (145)
T 1vq8_J 70 ----FYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNI 127 (145)
T ss_dssp ----CCCCSHHHHHHHHHHTTTTTTSHHHHHHHHTEEECSSCCSSSCCBCCTTCBCCTTSCC
T ss_pred ----EHHCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEECCCCCCCCCCCCCHHHHHCCCCC
T ss_conf ----0211889999999841589998068999838789779998723466776677525898