HHSEARCH alignment of GI: 254780292 and SCOP domain: d2gych1

Alignment
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=398.50  Aligned_cols=140  Identities=44%  Similarity=0.823  Sum_probs=137.4

Q ss_pred             CEEEECCHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCC
Q ss_conf             51132684360200699978987457679999999846565210345566888999751010015601211333311575
Q gi|254780292|r    2 IPTFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYRHTGY   81 (155)
Q Consensus         2 ~kT~~~k~~~~~r~W~iiDA~~~~lGRlAs~iA~~L~GKhKp~y~P~~d~GD~VvViNa~ki~~tG~K~~~k~y~~htgy   81 (155)
                      ||||++++++++|+||||||+||+||||||.||++|+|||||+|||++||||+||||||++|.+||+||.++.||+||||
T Consensus         1 Mkt~~~k~~~~~r~W~viDA~~~~lGRlAs~iA~~L~GK~kp~y~p~~d~Gd~VvViNaeki~~tG~K~~~k~y~~~sgy   80 (140)
T d2gych1           1 MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGH   80 (140)
T ss_dssp             CCCCCSSSCCTTCCCCCCCCSSSCSHHHHSSSSSSSTTCSSSCCCSSSCCCCCCCCSCSSSCCCCSSCSTTCCCCCCCSS
T ss_pred             CCCCCCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCC
T ss_conf             97625885671763799969999568889999999985468754101477767999963363056724654312003337


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCHHHCCCEEE
Q ss_conf             5763363020000124879999999973089985478999627010789997132085476
Q gi|254780292|r   82 PGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFM  142 (155)
Q Consensus        82 pGG~k~~~~~~~~~~~~P~~il~~aV~gMLPkn~lgr~~lkrL~vy~g~~Hph~aq~P~~l  142 (155)
                      |||+++.++.+++ .++|++||++||+||||+|++|+.+|+||+||+|++|||+||+|+.|
T Consensus        81 pgg~k~~~~~~~~-~k~P~~il~~aV~gMLPkn~lgr~~lkrLkvy~g~~hph~aQ~P~~l  140 (140)
T d2gych1          81 IGGIKQATFEEMI-ARRPERVIEIAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVL  140 (140)
T ss_dssp             CSSCCCCCCHHHH-TTCSSSSTTTSSSSCSCSSSTTSSTTTSSCCCCCCTTTTTSCCCCCC
T ss_pred             CCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCHHHHHHHHCCEEECCCCCCCCCCCCCCC
T ss_conf             9885311389997-65788999999971089975599998587896989998444488449


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: Ribosomal protein L13
superfamily: Ribosomal protein L13
family: Ribosomal protein L13
domain: Ribosomal protein L13
species: Escherichia coli [TaxId: 562]