RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780292|ref|YP_003064705.1| 50S ribosomal protein L13
[Candidatus Liberibacter asiaticus str. psy62]
         (155 letters)



>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 142

 Score =  148 bits (375), Expect = 2e-37
 Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 3/144 (2%)

Query: 4   TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63
           T+  K    E+ W++VDA G+ +GRLA+ IA R+RGK++P +TP+   GD VV+INA++V
Sbjct: 2   TYIPK--NDEQNWVVVDASGVPLGRLATLIASRIRGKHRPDFTPNMIQGDFVVVINAAQV 59

Query: 64  AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123
           A +GKK D K Y R+TGY GG+K  TA+E L+   P  +++ A+  MLP+G   R     
Sbjct: 60  ALTGKKLDDKVYTRYTGYQGGLKTETAREALSK-HPERVIEHAVFGMLPKGRQGRAMHTR 118

Query: 124 LHIYAEDHHPHEAQKPVFMDIAKM 147
           L +YA + HPH AQKP  +    +
Sbjct: 119 LKVYAGETHPHSAQKPQVLKTQPL 142


>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli
           [TaxId: 562]}
          Length = 140

 Score =  141 bits (356), Expect = 3e-35
 Identities = 63/136 (46%), Positives = 91/136 (66%), Gaps = 1/136 (0%)

Query: 4   TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63
           TF  K   V++ W +VDA G  +GRLA+++A RLRGK+K  YTP  D GD+++++NA KV
Sbjct: 3   TFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEYTPHVDTGDYIIVLNADKV 62

Query: 64  AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123
           A +G K   K YY HTG+ GGIK+ T +E++A   P  +++ A+  MLP+GPL R   + 
Sbjct: 63  AVTGNKRTDKVYYHHTGHIGGIKQATFEEMIA-RRPERVIEIAVKGMLPKGPLGRAMFRK 121

Query: 124 LHIYAEDHHPHEAQKP 139
           L +YA + H H AQ+P
Sbjct: 122 LKVYAGNEHNHAAQQP 137


>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus
           thermophilus [TaxId: 274]}
          Length = 139

 Score =  138 bits (349), Expect = 2e-34
 Identities = 63/140 (45%), Positives = 97/140 (69%), Gaps = 3/140 (2%)

Query: 4   TFFQKSSEVEKKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKV 63
           T+  K  +VE +W+L+DA+G  +GRLA++IA  LRGK++P +TP+   GD VV++NA K+
Sbjct: 3   TYVPK--QVEPRWVLIDAEGKTLGRLATKIATLLRGKHRPDWTPNVAMGDFVVVVNADKI 60

Query: 64  AFSGKKYDQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKN 123
             +GKK +QK Y R++GYPGG+KK   +++     P  +L+ A+  MLP+GPL R+  K 
Sbjct: 61  RVTGKKLEQKIYTRYSGYPGGLKKIPLEKM-LATHPERVLEHAVKGMLPKGPLGRRLFKR 119

Query: 124 LHIYAEDHHPHEAQKPVFMD 143
           L +YA   HPH+AQ+P  ++
Sbjct: 120 LKVYAGPDHPHQAQRPEKLE 139


>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 142

 Score =  109 bits (275), Expect = 7e-26
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 18/139 (12%)

Query: 14  KKWILVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQK 73
              ++VDA+  I+GR+ASQ+A +              DG+ V ++NA +   +G++    
Sbjct: 4   DADVIVDARDCIMGRVASQVAEQA------------LDGETVAVVNAERAVITGREEQIV 51

Query: 74  TYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHH 132
             Y      G        +      P  I K+ I  MLP +    R+  +++ +Y  + +
Sbjct: 52  EKYEKRVDIGNDNGYFYPK-----RPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPY 106

Query: 133 PHEAQKPVFMDIAKMNPKN 151
             + +      + +++   
Sbjct: 107 DEDGEVLDGTSLDRLSNIK 125


>d1j3aa_ c.21.1.1 (A:) Ribosomal protein L13 {Archaeon Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 142

 Score = 98.9 bits (246), Expect = 2e-22
 Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 18  LVDAKGLIVGRLASQIALRLRGKNKPTYTPSADDGDHVVIINASKVAFSGKKYDQKTYYR 77
           +++A GLI+GRLAS++A  L             +G+ VVI+NA K   +G +    + Y+
Sbjct: 3   IINADGLILGRLASRVAKML------------LEGEEVVIVNAEKAVITGNREVIFSKYK 50

Query: 78  HTGYPGGIKKTTAKEILAGASPTNILKKAIARMLP-RGPLARKQMKNLHIYAEDHHPHEA 136
                  +                I+++ I  MLP +    RK  + L +Y       + 
Sbjct: 51  QRTGLRTLTNPRRGPFYPK-RSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQD 109

Query: 137 QKPVFMDIAKMNPKNSRR 154
           ++   +  A ++  +  +
Sbjct: 110 KQLETIVEAHVSRLSRPK 127


>d1hn0a1 a.102.3.2 (A:235-618) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 384

 Score = 25.7 bits (56), Expect = 1.7
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 71  DQKTYYRHTGYPGGIKKTTAKEILAGASPTNILKKAIARMLPRGPLARKQMKNLHIYAED 130
            Q   Y+        K+     ++ G   T +   + A +L + P  + Q+K +++    
Sbjct: 78  KQIIIYQPENLNSQDKQLFDNYVILGNYTTLMFNISRAYVLEKDPTQKAQLKQMYLLMTK 137

Query: 131 HH 132
           H 
Sbjct: 138 HL 139


>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase
           {Alfalfa (Medicago sativa) [TaxId: 3879]}
          Length = 244

 Score = 24.7 bits (53), Expect = 4.1
 Identities = 10/54 (18%), Positives = 18/54 (33%)

Query: 102 ILKKAIARMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDIAKMNPKNSRRT 155
           ILKK    +   G   +  + ++ I  +       Q  + MD+         R 
Sbjct: 159 ILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERN 212


>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic
           domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 287

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 109 RMLPRGPLARKQMKNLHIYAEDHHPHEAQKPVFMDI 144
           +      + R  MK +  +   H  HE      MD+
Sbjct: 112 KRWQDISMMR--MKTIGEHIVAHIQHEVDFLFCMDV 145


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 588,578
Number of extensions: 26817
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 155
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,336,656
Effective search space: 102922512
Effective search space used: 102922512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.0 bits)