HHsearch alignment for GI: 254780293 and conserved domain: CHL00079
>CHL00079 rps9 ribosomal protein S9.
Probab=100.00 E-value=0 Score=343.30 Aligned_cols=127 Identities=45% Similarity=0.705 Sum_probs=122.8
Q ss_pred CCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCC-CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 5500131112108999998189739994100888446-989999999999873856641079998259830188899999
Q gi|254780293|r 44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFT-QDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 44 g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~-~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla 122 (170)
T Consensus 7 ~~~y~tGkRKtsiArv~i~~GsG~i~VN~k~l~~Yf~~~~~~~~~v~~Pl~~~~~~~k~DI~i~V~GGG~sgQa~Air~a 86 (134)
T CHL00079 7 ILYYGTGRRKCAVAQVRLVPGTGEIIINGKPGEEYLQYNPNYLKAIKAPLEVLGLENQYDIIVKVKGGGLTGQAEAIKLG 86 (134)
T ss_pred EEEEEECCCCCEEEEEEEECCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf 79998668705899999986983699959709996586699999999799986878735699999788754399999999
Q ss_pred HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997657634487997798335755416759528984335430579
Q gi|254780293|r 123 VAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 123 IarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
T Consensus 87 IaRaL~~~~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~q~skR 134 (134)
T CHL00079 87 IARALCSMNPENRKSLKSEGFLTRDARIKERKKYGLKKARKAPQFSKR 134 (134)
T ss_pred HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999979776799987779126731215586897455647365779