HHsearch alignment for GI: 254780293 and conserved domain: CHL00079

>CHL00079 rps9 ribosomal protein S9.
Probab=100.00  E-value=0  Score=343.30  Aligned_cols=127  Identities=45%  Similarity=0.705  Sum_probs=122.8

Q ss_pred             CCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCC-CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             5500131112108999998189739994100888446-989999999999873856641079998259830188899999
Q gi|254780293|r   44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFT-QDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        44 g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~-~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
T Consensus         7 ~~~y~tGkRKtsiArv~i~~GsG~i~VN~k~l~~Yf~~~~~~~~~v~~Pl~~~~~~~k~DI~i~V~GGG~sgQa~Air~a   86 (134)
T CHL00079          7 ILYYGTGRRKCAVAQVRLVPGTGEIIINGKPGEEYLQYNPNYLKAIKAPLEVLGLENQYDIIVKVKGGGLTGQAEAIKLG   86 (134)
T ss_pred             EEEEEECCCCCEEEEEEEECCCCEEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHH
T ss_conf             79998668705899999986983699959709996586699999999799986878735699999788754399999999


Q ss_pred             HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999997657634487997798335755416759528984335430579
Q gi|254780293|r  123 VAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       123 IarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
T Consensus        87 IaRaL~~~~~~~r~~Lk~~glLtrD~R~~ErKK~G~~kARk~~q~skR  134 (134)
T CHL00079         87 IARALCSMNPENRKSLKSEGFLTRDARIKERKKYGLKKARKAPQFSKR  134 (134)
T ss_pred             HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999979776799987779126731215586897455647365779