HHsearch alignment for GI: 254780293 and conserved domain: COG0103

>COG0103 RpsI Ribosomal protein S9 [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=0  Score=340.17  Aligned_cols=126  Identities=51%  Similarity=0.809  Sum_probs=124.7

Q ss_pred             CCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             50013111210899999818973999410088844698999999999987385664107999825983018889999999
Q gi|254780293|r   45 RSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        45 ~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
T Consensus         5 ~~~~tGkRK~AvArv~l~~g~G~i~vNg~~~e~yf~~e~~r~~i~~Pl~l~~~~~~~Di~v~V~GGG~~GQA~AiR~gIa   84 (130)
T COG0103           5 QVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKFDIDVTVKGGGISGQAGAIRHGIA   84 (130)
T ss_pred             EEEEECCCCCEEEEEEEECCCCEEEECCCCHHHHCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHH
T ss_conf             24640554326899999768758999891899966409999998766998674245547999966984689999999999


Q ss_pred             HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9997657634487997798335755416759528984335430579
Q gi|254780293|r  125 KALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       125 rAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
T Consensus        85 RAL~~~~~~lr~~lk~~g~LtrD~R~~ErKK~G~~kARr~~Q~SkR  130 (130)
T COG0103          85 RALVEYDPELRPALKKAGLLTRDPRRVERKKYGLKKARRRPQFSKR  130 (130)
T ss_pred             HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999979898999987788015764324443576332115344569