HHsearch alignment for GI: 254780293 and conserved domain: TIGR03627
>TIGR03627 arch_S9P archaeal ribosomal protein S9P. This model describes exclusively the archaeal ribosomal protein S9P. Homologous eukaryotic and bacterial ribosomal proteins are excluded from this model.
Probab=100.00 E-value=0 Score=323.34 Aligned_cols=124 Identities=36% Similarity=0.480 Sum_probs=117.4
Q ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHH-CCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 00131112108999998189739994100888446989999999999873-85664107999825983018889999999
Q gi|254780293|r 46 SYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTV-SQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170)
Q Consensus 46 ~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~-~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170)
T Consensus 2 i~~tGrRKtaiA~v~l~~G~G~i~VNg~~~~~-~~~~~~~~~i~~Pl~~~~~~~~~~di~i~V~GGG~sgQa~AirlaIa 80 (130)
T TIGR03627 2 VITSGKRKTAIARATIREGKGRVRINGVPVEL-YPPELARLKIMEPLILAGDIAKEVDIDVKVSGGGIMGQADAARTAIA 80 (130)
T ss_pred EEEECCCCCEEEEEEEECCCEEEEECCEEHHH-HCCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEHHHHHHHHHHH
T ss_conf 15567680779999999171799999987999-49999999998509998451558508999982883068879999999
Q ss_pred HHHHHH--CHHHHHHHHH--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999765--7634487997--798335755416759528984335430579
Q gi|254780293|r 125 KALTYF--QPDLRPQIKK--GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 125 rAL~~~--~p~~r~~Lk~--~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
T Consensus 81 raL~~~~~~~~l~~~l~~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 130 (130)
T TIGR03627 81 RGLVEFTGDKELRDAFRAYDRTLLVNDPRRKEPKKPGGRGARAKRQKSYR 130 (130)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99998635878899998553887466743323476898664737265679