HHsearch alignment of GI: 254780293 and MMDB domain: 3i1m_I_
>3i1m_I (I:) 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ...
Probab=100.00 E-value=0 Score=337.05 Aligned_cols=128 Identities=47% Similarity=0.768 Sum_probs=125.9
Q ss_pred CCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 35500131112108999998189739994100888446989999999999873856641079998259830188899999
Q gi|254780293|r 43 WQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 43 ~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla 122 (170)
.+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.+++||.+++..++|||+|+|+|||+||||+|||||
T Consensus 3 ~~~~~~~GkRKta~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~a 82 (130)
T 3i1m_I 3 ENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHG 82 (130)
T ss_dssp -CCBCCCCCCSSCEEEEEEESSCSCBCGGGSCSTTTTTTSTTTTTTTTTSSSSCCSSSCEEEEEEESSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCEEEEEEEEECCCEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 63888744242589999999267669767077765354676899998788873666514699998469821488899999
Q ss_pred HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997657634487997798335755416759528984335430579
Q gi|254780293|r 123 VAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 123 IarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
|||||+.++|++++.|+++||||+|+|++||||||++||||+||||||
T Consensus 83 iaraL~~~~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 130 (130)
T 3i1m_I 83 ITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130 (130)
T ss_dssp HHHHTTSSCSSSTTTTTTTTTTSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999998609463588887859537756455588897565616244679