Query         gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 170
No_of_seqs    129 out of 946
Neff          5.2 
Searched_HMMs 33803
Date          Tue May 24 16:27:05 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780293.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bbn_I Ribosomal protein S9;  100.0       0       0  361.3   9.3  145   26-170    52-197 (197)
  2 >2vqe_I 30S ribosomal protein  100.0       0       0  339.1  10.8  127   44-170     2-128 (128)
  3 >3i1m_I 30S ribosomal protein  100.0       0       0  337.0   1.3  128   43-170     3-130 (130)
  4 >2zkq_i 40S ribosomal protein  100.0       0       0  328.0   7.2  133   38-170     2-146 (146)
  5 >3jyv_I 40S ribosomal protein  100.0       0       0  314.0   9.5  125   46-170     2-138 (138)
  6 >1sbp_A Sulfate-binding protei  75.7     1.1 3.1E-05   24.3   1.1   83   68-153     3-87  (141)
  7 >3b5x_A Lipid A export ATP-bin  60.2      12 0.00036   17.7   4.8   86   43-129    45-174 (259)
  8 >2r6f_A Excinuclease ABC subun  55.7     5.3 0.00016   20.0   1.4   25   60-84     29-53  (120)
  9 >2dy1_A Elongation factor G; t  54.0      15 0.00045   17.1   4.6   80   53-134    24-118 (133)
 10 >2r9z_A Glutathione amide redu  53.1      12 0.00037   17.7   2.9   25   98-124     2-26  (189)
 11 >1mv5_A LMRA, multidrug resist  51.3      13 0.00037   17.6   2.8   80   49-129    37-156 (243)
 12 >1fec_A Trypanothione reductas  51.2      13 0.00037   17.7   2.7   22  100-123     3-24  (200)
 13 >3dgz_A Thioredoxin reductase   51.1      13 0.00038   17.6   2.8   24   97-122     3-26  (197)
 14 >2a8x_A Dihydrolipoyl dehydrog  50.4      12 0.00036   17.7   2.6   23   99-123     2-24  (194)
 15 >1trb_A Thioredoxin reductase;  49.0      13 0.00039   17.5   2.6   26   97-124     2-27  (168)
 16 >1zk7_A HGII, reductase, mercu  47.2      17  0.0005   16.8   2.9   24   98-123     2-25  (197)
 17 >2ff7_A Alpha-hemolysin transl  46.7      11 0.00034   17.9   1.9   81   49-130    44-163 (247)
 18 >2f5v_A Pyranose 2-oxidase; fl  44.9      20 0.00058   16.5   2.9   27   96-124    14-40  (329)
 19 >2cul_A Glucose-inhibited divi  44.6      17  0.0005   16.8   2.6   24   99-124     2-25  (169)
 20 >2a87_A TRXR, TR, thioredoxin   44.3      17 0.00051   16.8   2.5   31   92-124     6-36  (190)
 21 >3cty_A Thioredoxin reductase;  43.9      20 0.00058   16.4   2.8   31   92-124     8-38  (174)
 22 >2i0z_A NAD(FAD)-utilizing deh  42.3      19 0.00057   16.5   2.6   34   88-123    14-47  (249)
 23 >1v59_A Dihydrolipoamide dehyd  42.2      17  0.0005   16.8   2.3   22   99-122     4-25  (193)
 24 >2v6o_A Thioredoxin glutathion  41.5      22 0.00065   16.2   2.7   15  108-122     7-21  (203)
 25 >1hyu_A AHPF, alkyl hydroperox  41.4      24 0.00072   15.9   3.4   28   95-124    21-48  (189)
 26 >1zmd_A Dihydrolipoyl dehydrog  41.3      21 0.00062   16.3   2.6   23   99-123     5-27  (197)
 27 >3f8d_A Thioredoxin reductase   41.2      24 0.00071   15.9   2.9   14  108-121    21-34  (193)
 28 >3dk9_A Grase, GR, glutathione  40.9      17 0.00052   16.8   2.2   30   92-123    12-41  (207)
 29 >3d8x_A Thioredoxin reductase   40.5      22 0.00065   16.2   2.6   25   98-124     8-32  (169)
 30 >1dxl_A Dihydrolipoamide dehyd  40.1      23 0.00069   16.0   2.7   24   98-123     4-27  (187)
 31 >1ges_A Glutathione reductase;  39.9      24  0.0007   16.0   2.7   22   99-122     3-24  (190)
 32 >1xdi_A RV3303C-LPDA; reductas  39.8      24 0.00071   15.9   2.7   21  101-123     3-23  (203)
 33 >2qae_A Lipoamide, dihydrolipo  39.8      25 0.00075   15.8   2.8   13  109-121     9-21  (194)
 34 >2wwb_N 60S ribosomal protein   39.6      21 0.00061   16.3   2.4   40  101-140    29-68  (120)
 35 >2bcg_G Secretory pathway GDP   39.2      26 0.00077   15.7   2.9   30   91-122     2-31  (152)
 36 >2bi7_A UDP-galactopyranose mu  38.5      26 0.00076   15.7   2.7   23   99-123     2-24  (119)
 37 >1v71_A Serine racemase, hypot  38.0      21 0.00062   16.3   2.2   72   57-134    41-119 (240)
 38 >1z0w_A Putative protease LA h  37.9      27  0.0008   15.6   2.8   69   59-130    37-111 (207)
 39 >2hqm_A GR, grase, glutathione  37.9      27 0.00079   15.6   2.7   24   98-123     9-32  (207)
 40 >1ebd_A E3BD, dihydrolipoamide  37.4      23 0.00068   16.0   2.3   21  100-122     3-23  (197)
 41 >1fl2_A Alkyl hydroperoxide re  37.2      28 0.00083   15.5   2.7   13  109-121     8-20  (170)
 42 >3l8k_A Dihydrolipoyl dehydrog  37.0      27 0.00079   15.6   2.6   22   99-122     3-24  (183)
 43 >2eq6_A Pyruvate dehydrogenase  36.7      27  0.0008   15.6   2.6   23   98-122     4-26  (179)
 44 >2zzc_A Thioredoxin reductase   35.5      30 0.00089   15.3   2.9   25   98-124    24-48  (217)
 45 >1ykw_A Rubisco-like protein;   35.5      26 0.00078   15.7   2.4   44   99-143   229-287 (291)
 46 >3cuq_B Vacuolar protein-sorti  35.3      19 0.00057   16.5   1.7   39  108-149    13-51  (66)
 47 >2jbv_A Choline oxidase; alcoh  35.1      27  0.0008   15.6   2.4   23   98-122    11-33  (176)
 48 >1pn0_A Phenol 2-monooxygenase  34.6      31 0.00091   15.2   2.6   14  108-121    14-27  (300)
 49 >2gag_A Heterotetrameric sarco  34.6      31 0.00091   15.2   2.6   24   99-124    13-36  (214)
 50 >1ju2_A HydroxynitrIle lyase;   32.8      31 0.00092   15.2   2.4   26   97-124    23-48  (183)
 51 >1zbt_A RF-1, peptide chain re  32.4      31 0.00091   15.2   2.3   16   48-63     90-105 (150)
 52 >1rre_A ATP-dependent protease  32.3      34   0.001   15.0   5.1   88   41-128     9-109 (200)
 53 >1rhy_A IGPD, imidazole glycer  32.1      34   0.001   15.0   4.5   84   49-133   102-188 (202)
 54 >2dkh_A 3-hydroxybenzoate hydr  31.9      33 0.00097   15.1   2.4   22   99-122    31-52  (258)
 55 >2zbw_A Thioredoxin reductase;  31.5      35   0.001   14.9   2.7   12  109-120    12-23  (178)
 56 >1lvl_A Dihydrolipoamide dehyd  31.1      35   0.001   14.9   2.5   24   99-124     4-27  (192)
 57 >1vdc_A NTR, NADPH dependent t  30.1      37  0.0011   14.8   2.6   24   99-124     7-30  (179)
 58 >3fim_B ARYL-alcohol oxidase;   29.6      37  0.0011   14.8   2.3   21  100-122     2-22  (146)
 59 >1i8t_A UDP-galactopyranose mu  29.3      36  0.0011   14.8   2.2   17  107-123     6-22  (171)
 60 >3ihg_A RDME; flavoenzyme, ant  29.1      38  0.0011   14.7   2.7   11  108-118    11-21  (217)
 61 >1s3e_A Amine oxidase [flavin-  28.9      39  0.0011   14.6   2.5   15  108-122    10-24  (200)
 62 >2hyd_A ABC transporter homolo  28.3      39  0.0012   14.6   2.3   44   85-129    20-70  (71)
 63 >1n4w_A CHOD, cholesterol oxid  27.2      41  0.0012   14.4   2.7   24   99-124     4-27  (207)
 64 >2ihr_1 Peptide chain release   27.1      35   0.001   14.9   1.9   17   48-64     87-103 (172)
 65 >1sez_A Protoporphyrinogen oxi  26.4      43  0.0013   14.4   2.5   17  106-122    17-33  (228)
 66 >3ic9_A Dihydrolipoamide dehyd  26.2      43  0.0013   14.3   3.0   21  100-122     8-28  (195)
 67 >2q7v_A Thioredoxin reductase;  25.6      44  0.0013   14.3   2.7   25   98-124     6-30  (172)
 68 >2bs2_A Quinol-fumarate reduct  25.0      45  0.0013   14.2   2.3   21  102-122   243-267 (309)
 69 >2f1d_A IGPD 1, imidazoleglyce  24.9      46  0.0013   14.2   4.0   79   51-130   106-186 (207)
 70 >2b9w_A Putative aminooxidase;  24.5      46  0.0014   14.2   2.6   22  100-123     6-27  (191)
 71 >1rq0_A RF-1, peptide chain re  24.4      43  0.0013   14.4   1.9   16   48-63     86-101 (147)
 72 >2yqu_A 2-oxoglutarate dehydro  23.4      49  0.0014   14.0   2.7   15  108-122     7-21  (186)
 73 >1gqe_A Release factor 2, RF2;  23.3      46  0.0014   14.2   1.9   16   48-63     89-104 (162)
 74 >2oem_A 2,3-diketo-5-methylthi  23.2      49  0.0015   14.0   2.6   45  102-147   234-293 (294)
 75 >2oln_A NIKD protein; flavopro  22.8      50  0.0015   13.9   2.7   22   99-122     3-24  (168)
 76 >1in4_A RUVB, holliday junctio  22.6      47  0.0014   14.1   1.8   43  108-151    18-60  (80)
 77 >1d5t_A Guanine nucleotide dis  22.3      51  0.0015   13.9   2.9   25   97-123     3-27  (135)
 78 >1v0j_A UDP-galactopyranose mu  21.9      52  0.0015   13.8   2.9   29  119-147   194-222 (224)
 79 >2aeu_A Hypothetical protein M  21.6      53  0.0016   13.8   4.6   47   74-127     4-50  (157)
 80 >2ivd_A PPO, PPOX, protoporphy  21.4      54  0.0016   13.8   2.3   18  105-122   212-231 (247)
 81 >2qyg_A Ribulose bisphosphate   20.9      55  0.0016   13.7   3.0   41  100-141   230-285 (288)
 82 >3hdq_A UDP-galactopyranose mu  20.9      55  0.0016   13.7   3.1   24   98-123    27-50  (224)
 83 >2b3t_B RF-1, peptide chain re  20.7      37  0.0011   14.7   1.0   17   48-64    109-125 (173)
 84 >3fmw_A Oxygenase; mithramycin  20.5      56  0.0017   13.6   2.0   44   79-124    25-71  (351)
 85 >3b60_A Lipid A export ATP-bin  20.3      52  0.0015   13.8   1.6   46   83-129    17-69  (70)

No 1  
>>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (I:)
Probab=100.00  E-value=0  Score=361.32  Aligned_cols=145  Identities=45%  Similarity=0.624  Sum_probs=136.3

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCC-CHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             3323223222346545435500131112108999998189739994100888446-989999999999873856641079
Q gi|254780293|r   26 PEETSSSPAIHSRKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFT-QDLLVLNIKRPFNTVSQDNMYDVF  104 (170)
Q Consensus        26 ~~~~~~~~~~~~~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~-~~~~r~~i~~Pl~~~~~~~~~Di~  104 (170)
                      .............+.|..+++|++||||+|+|+|||++|+|+|+|||+|+++||+ +..+++.++.||.+++..++|||+
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~GrRKta~A~V~l~~GtG~i~INg~~~~~yf~~~~~~~~~~~~pl~~~~~~~~~dv~  131 (197)
T 3bbn_I           52 TADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVF  131 (197)
T ss_dssp             -------------------CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEE
T ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             33266664320677534116885468805799999983742899999048997791699999998888874115762069


Q ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             998259830188899999999997657634487997798335755416759528984335430579
Q gi|254780293|r  105 ATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       105 ~~V~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      |+|+|||+||||+||||||||||+.++|++++.|+++||||+|+|++||||||++||||+||||||
T Consensus       132 ~~v~GGG~sgQa~Air~aiaraL~~~~~~~~~~l~~~glLt~D~R~~ErKK~G~~kARk~~q~skR  197 (197)
T 3bbn_I          132 VKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR  197 (197)
T ss_dssp             EEEESSCHHHHHHHHHHHHHHHTTTSCGGGSHHHHTTTCSSCCCCCCCCCCTTSSSTTCCCCCCCC
T ss_pred             EEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999518965410217999999999979776798988749126741124577897566426244679


No 2  
>>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (I:)
Probab=100.00  E-value=0  Score=339.06  Aligned_cols=127  Identities=47%  Similarity=0.785  Sum_probs=124.9

Q ss_pred             CCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             55001311121089999981897399941008884469899999999998738566410799982598301888999999
Q gi|254780293|r   44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        44 g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ...|++||||||+|+|||++|+|+|+|||+|+++||++..+++.+++||.+++..++|||+|+|+|||+||||+||||||
T Consensus         2 ~~~~~~GkRKta~A~v~l~~G~G~I~INg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~DI~~~V~GGG~sgQa~Air~ai   81 (128)
T 2vqe_I            2 EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI   81 (128)
T ss_dssp             CCEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCEEEEEEEECCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHH
T ss_conf             46787250505899999983884499804267664417789999876654212257426899995598510588899999


Q ss_pred             HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99997657634487997798335755416759528984335430579
Q gi|254780293|r  124 AKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       124 arAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      ||||+.++|++++.|++.||||+|||++||||||++||||+||||||
T Consensus        82 araL~~~~~~~~~~lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  128 (128)
T 2vqe_I           82 ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR  128 (128)
T ss_dssp             HHHHHHHCGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred             HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99999979786899987688036541023577787665515244579


No 3  
>>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:)
Probab=100.00  E-value=0  Score=337.05  Aligned_cols=128  Identities=47%  Similarity=0.768  Sum_probs=125.9

Q ss_pred             CCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             35500131112108999998189739994100888446989999999999873856641079998259830188899999
Q gi|254780293|r   43 WQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        43 ~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      .+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.+++||.+++..++|||+|+|+|||+||||+|||||
T Consensus         3 ~~~~~~~GkRKta~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~a   82 (130)
T 3i1m_I            3 ENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHG   82 (130)
T ss_dssp             -CCBCCCCCCSSCEEEEEEESSCSCBCGGGSCSTTTTTTSTTTTTTTTTSSSSCCSSSCEEEEEEESSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCEEEEEEEEECCCEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf             63888744242589999999267669767077765354676899998788873666514699998469821488899999


Q ss_pred             HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             999997657634487997798335755416759528984335430579
Q gi|254780293|r  123 VAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       123 IarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      |||||+.++|++++.|+++||||+|+|++||||||++||||+||||||
T Consensus        83 iaraL~~~~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  130 (130)
T 3i1m_I           83 ITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR  130 (130)
T ss_dssp             HHHHTTSSCSSSTTTTTTTTTTSCCCCCCCCCCTTSSBTTBCCCCCCC
T ss_pred             HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999998609463588887859537756455588897565616244679


No 4  
>>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (i:)
Probab=100.00  E-value=0  Score=328.04  Aligned_cols=133  Identities=26%  Similarity=0.288  Sum_probs=123.7

Q ss_pred             CCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHH-HHHHHHCCCCCEEEEEEEECCCCCHHH
Q ss_conf             6545435500131112108999998189739994100888446989999999-999873856641079998259830188
Q gi|254780293|r   38 RKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIK-RPFNTVSQDNMYDVFATVSGGGLSGQA  116 (170)
Q Consensus        38 ~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~-~Pl~~~~~~~~~Di~~~V~GGG~sgQa  116 (170)
                      +++|..+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.++ .||.+++..++|||+|+|+|||+||||
T Consensus         2 ~~~~~~~~~~~~GrRKta~A~v~l~~G~G~I~INg~~l~~yf~~~~~~~~~~~~pl~~~~~~~~~Dv~v~v~GGG~~gQa   81 (146)
T 2zkq_i            2 PSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQI   81 (146)
T ss_dssp             ------CCEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHH
T ss_pred             CCCCCCCEEEEECCCCEEEEEEEEEECCCCEEECCCCHHHCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCCCEEHH
T ss_conf             98888618889662602899999991676489869778890689899998433431153223563258997338813003


Q ss_pred             HHHHHHHHHHHHHHCHHH-----HHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             899999999997657634-----487997------798335755416759528984335430579
Q gi|254780293|r  117 SAICHGVAKALTYFQPDL-----RPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       117 ~AirlaIarAL~~~~p~~-----r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      +||||||||||+.|+|++     ++.||+      .||||+|||++||||||++|||++||||||
T Consensus        82 ~Air~aiaraL~~~~~~~~~~~~r~~lk~~~~~~~~glL~rD~R~~ErKK~G~~kARk~~q~skR  146 (146)
T 2zkq_i           82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR  146 (146)
T ss_dssp             HHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf             26499999999986143037445088898776443876346730004586898756647376779


No 5  
>>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:)
Probab=100.00  E-value=0  Score=314.04  Aligned_cols=125  Identities=29%  Similarity=0.334  Sum_probs=117.1

Q ss_pred             CEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCC-HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             001311121089999981897399941008884469-8999999999987385664107999825983018889999999
Q gi|254780293|r   46 SYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQ-DLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        46 ~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~-~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      .|++||||||+|+|||++|+|+|+|||+|+++||++ ...++.+..||..++..++|||+|+|+|||+||||+|||||||
T Consensus         2 v~~~GrRKta~A~v~l~~G~G~I~INg~~~~~yf~~~~~~~~~~~~pl~~~~~~~~~Di~i~V~GGG~~gQa~Air~aia   81 (138)
T 3jyv_I            2 VQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIA   81 (138)
T ss_dssp             BCCCCCSSSCEEEEEEEESCCCEEETTEEHHHHCCSSSTTGGGHHHHHTSSCSSSSEEEEEEEESCCTTTHHHHHHHHHH
T ss_pred             CEEECCCEEEEEEEEEECCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf             34166472089999998486549999933444088999999861587753233365016999967864279869999999


Q ss_pred             HHHHHHC-----HHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9997657-----634487997------798335755416759528984335430579
Q gi|254780293|r  125 KALTYFQ-----PDLRPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       125 rAL~~~~-----p~~r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      |||+.|+     |..++.||+      .||||+|+|++||||||++||||+||||||
T Consensus        82 raL~~~~~~~~~~~~r~~Lk~~~~~~d~glLtrD~R~~ErKK~G~~kARk~~q~skR  138 (138)
T 3jyv_I           82 KGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR  138 (138)
T ss_dssp             HTTTTCCCSSCSTTHHHHHHSSSCSSCCCSSSCCCCCCCCCCSSSSCSSSCSCCSCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             999986101268455799998875346675614624443688898665636366789


No 6  
>>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} (A:1-85,A:220-275)
Probab=75.69  E-value=1.1  Score=24.29  Aligned_cols=83  Identities=18%  Similarity=0.203  Sum_probs=54.5

Q ss_pred             EEEECCCHHHHCCCHHHHHHHHHHHHH-HCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHCCCCC
Q ss_conf             999410088844698999999999987-3856641079998259830188899999999997657-63448799779833
Q gi|254780293|r   68 FTINYVDISKYFTQDLLVLNIKRPFNT-VSQDNMYDVFATVSGGGLSGQASAICHGVAKALTYFQ-PDLRPQIKKGGFLT  145 (170)
Q Consensus        68 I~INgk~~~~Yf~~~~~r~~i~~Pl~~-~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~~-p~~r~~Lk~~glLt  145 (170)
                      +++++.+++.  +++ +-..+...|.- ......-+|.+.-+=||.+.||.||--|+-=-++.+. +..-..|-+.||+.
T Consensus         3 ~~llnvSYdv--tRe-~y~~~n~~F~~~wk~~tG~~v~i~qShggSg~QaraV~~Gl~ADVVtlal~~Did~l~~~GlI~   79 (141)
T 1sbp_A            3 IQLLNVSYDP--TRE-LYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRID   79 (141)
T ss_dssp             EEEEEEECST--THH-HHHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSC
T ss_pred             CEEEEEEECC--HHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC
T ss_conf             0899975004--199-9999999999998760299779996378579999999749998999968788899999779865


Q ss_pred             CCCCCCCC
Q ss_conf             57554167
Q gi|254780293|r  146 RDSRIVER  153 (170)
Q Consensus       146 ~D~R~~Er  153 (170)
                      .|.+..|+
T Consensus        80 ~dW~~~E~   87 (141)
T 1sbp_A           80 KNWIKREP   87 (141)
T ss_dssp             TTGGGGCC
T ss_pred             CCCHHHCC
T ss_conf             55312178


No 7  
>>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} (A:324-582)
Probab=60.23  E-value=12  Score=17.75  Aligned_cols=86  Identities=21%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             CCCCEE----EEECCCEEEEEE---EECCCCEEEEECCCHHHHCCC------------------------------HHHH
Q ss_conf             355001----311121089999---981897399941008884469------------------------------8999
Q gi|254780293|r   43 WQRSYA----TGKRKTSIARVW---IKSGSGKFTINYVDISKYFTQ------------------------------DLLV   85 (170)
Q Consensus        43 ~g~~~~----tGrRKtsvArV~---l~~GsG~I~INgk~~~~Yf~~------------------------------~~~r   85 (170)
                      .|..++    +|-=||+...+.   +.+-+|.|.|||.++.+|=..                              ....
T Consensus        45 ~Ge~~aivG~sGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~  124 (259)
T 3b5x_A           45 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR  124 (259)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEHHHCCHHHHHHHEEEEEECCEECCCCCCCCCCCCCCCCCCH
T ss_conf             89899999999986999999986346467897528988766489999985269981301113674321102354555657


Q ss_pred             HHHHHHHHHHCCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999873856-------6410799982598301888999999999976
Q gi|254780293|r   86 LNIKRPFNTVSQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY  129 (170)
Q Consensus        86 ~~i~~Pl~~~~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~  129 (170)
                      ..+.+-+..++..       ..+|-.+.-.|.-+|| -+-=|.+|||||+.
T Consensus       125 ~~i~~~~~~~~~~~~i~~lp~gl~t~i~~~g~~LSg-Gq~QRi~lARaL~~  174 (259)
T 3b5x_A          125 EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG-GQRQRVAIARALLR  174 (259)
T ss_pred             HHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCH-HHHHHHHHHHHHHH
T ss_conf             999999999585789972767678775588984799-99999999999972


No 8  
>>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:116-143,A:431-522)
Probab=55.71  E-value=5.3  Score=19.96  Aligned_cols=25  Identities=12%  Similarity=0.029  Sum_probs=20.6

Q ss_pred             EEECCCCEEEEECCCHHHHCCCHHH
Q ss_conf             9981897399941008884469899
Q gi|254780293|r   60 WIKSGSGKFTINYVDISKYFTQDLL   84 (170)
Q Consensus        60 ~l~~GsG~I~INgk~~~~Yf~~~~~   84 (170)
                      .++|-+|.|.|||+++.+++.....
T Consensus        29 ~l~PtsG~I~idGkdI~~i~~~~l~   53 (120)
T 2r6f_A           29 RLKKESLAVLVGGKHIGEVTAXSVT   53 (120)
T ss_dssp             CBCTTTTTEESSSCBHHHHHTSBHH
T ss_pred             CCHHHHHHHHHCCCEECHHCCCCHH
T ss_conf             1469997425079604120037999


No 9  
>>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} (A:454-571,A:651-665)
Probab=54.03  E-value=15  Score=17.11  Aligned_cols=80  Identities=14%  Similarity=0.096  Sum_probs=47.7

Q ss_pred             CCEEEEEEE--ECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCC------CEEEEEEEECCCCCH---HHH----
Q ss_conf             210899999--81897399941008884469899999999998738566------410799982598301---888----
Q gi|254780293|r   53 KTSIARVWI--KSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDN------MYDVFATVSGGGLSG---QAS----  117 (170)
Q Consensus        53 KtsvArV~l--~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~------~~Di~~~V~GGG~sg---Qa~----  117 (170)
                      +...|+||+  .|+++.+.+|......+ +. .+...|.+=|...-..|      -.||.+++.+|....   -..    
T Consensus        24 ~~~~a~V~l~iep~~~~~~~~~~~~~~~-p~-e~~~ai~~G~~~a~~~GpL~g~pv~dvkv~L~d~~~h~~~s~~~~f~~  101 (133)
T 2dy1_A           24 HGQYGDVWLRLEPASEYGFEWRITGGVI-PS-KYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQI  101 (133)
T ss_dssp             EEEEEEEEEEEEECSSCEEEECCCTTSS-CG-GGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHHHHH
T ss_pred             CCEEEEEEEEECCCCCCCCCCCCCCCEE-HH-HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEECCCCCCHHHHH
T ss_conf             8715368889777745675400358751-34-435777677899985674125552445999985775068887068999


Q ss_pred             HHHHHHHHHHHHHCHHH
Q ss_conf             99999999997657634
Q gi|254780293|r  118 AICHGVAKALTYFQPDL  134 (170)
Q Consensus       118 AirlaIarAL~~~~p~~  134 (170)
                      |.+.++-.|+....|-|
T Consensus       102 Aa~~a~~~a~~~A~p~L  118 (133)
T 2dy1_A          102 AASLAFKKVMAEAHPVL  118 (133)
T ss_dssp             HHHHHHHHHHHHSCEEE
T ss_pred             HHHHHHHHHHHHCCCEE
T ss_conf             99999999998589889


No 10 
>>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* (A:1-138,A:281-331)
Probab=53.07  E-value=12  Score=17.70  Aligned_cols=25  Identities=32%  Similarity=0.421  Sum_probs=18.6

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             664107999825983018889999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..+|||.|  -|||..|-+-|++++-.
T Consensus         2 t~~yDViI--IGaGpAGl~AA~~la~~   26 (189)
T 2r9z_A            2 TQHFDLIA--IGGGSGGLAVAEKAAAF   26 (189)
T ss_dssp             CCCEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             96077999--97889999999999968


No 11 
>>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} (A:)
Probab=51.25  E-value=13  Score=17.64  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             EEECCCEEEEEEE---ECCCCEEEEECCCHHHHC------------------------------CCHHHHHHHHHHHHHH
Q ss_conf             3111210899999---818973999410088844------------------------------6989999999999873
Q gi|254780293|r   49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYF------------------------------TQDLLVLNIKRPFNTV   95 (170)
Q Consensus        49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf------------------------------~~~~~r~~i~~Pl~~~   95 (170)
                      +|-=||+..+...   .|-+|.|.|||.++..|-                              ........+.+-+...
T Consensus        37 sGsGKSTLl~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~  116 (243)
T 1mv5_A           37 SGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA  116 (243)
T ss_dssp             TTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf             99819999999966877896389999999740169999734599926884365658762023444556889999999997


Q ss_pred             CC-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             85-------66410799982598301888999999999976
Q gi|254780293|r   96 SQ-------DNMYDVFATVSGGGLSGQASAICHGVAKALTY  129 (170)
Q Consensus        96 ~~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~  129 (170)
                      ..       ...+|..+.-.|-.+|| -+.=|++|||||+.
T Consensus       117 ~~~~~i~~l~~~l~t~i~~~g~~LSg-Gq~Qri~lARal~~  156 (243)
T 1mv5_A          117 FARSFVENMPDQLNTEVGERGVKISG-GQRQRLAIARAFLR  156 (243)
T ss_dssp             TCTTTTTSSTTGGGCEESTTSBCCCH-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHCHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHC
T ss_conf             62756764611104722588898699-99999999999852


No 12 
>>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} (A:1-159,A:315-355)
Probab=51.20  E-value=13  Score=17.66  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=15.2

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             410799982598301888999999
Q gi|254780293|r  100 MYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      +|||.|  -|||+.|-+-|+.++=
T Consensus         3 ~yDViI--IGaGpAGl~aA~~lar   24 (200)
T 1fec_A            3 AYDLVV--IGAGSGGLEAGWNAAS   24 (200)
T ss_dssp             SEEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             179899--9978899999999997


No 13 
>>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* (A:1-155,A:315-356)
Probab=51.14  E-value=13  Score=17.56  Aligned_cols=24  Identities=29%  Similarity=0.469  Sum_probs=16.9

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             56641079998259830188899999
Q gi|254780293|r   97 QDNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        97 ~~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ...+|||.|  -|||.+|-+-|+.++
T Consensus         3 ~~~~yDViI--IGaGpAGL~AA~~la   26 (197)
T 3dgz_A            3 GQQSFDLLV--IGGGSGGLACAKEAA   26 (197)
T ss_dssp             -CCEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             887246899--997889999999999


No 14 
>>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} (A:1-142,A:288-339)
Probab=50.44  E-value=12  Score=17.72  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=16.0

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             6410799982598301888999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ++|||.|  -|||..|.+-|++++-
T Consensus         2 t~yDVIV--IGaGpAGl~aA~~la~   24 (194)
T 2a8x_A            2 THYDVVV--LGAGPGGYVAAIRAAQ   24 (194)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             9348899--8988899999999996


No 15 
>>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} (A:1-112,A:265-320)
Probab=49.01  E-value=13  Score=17.52  Aligned_cols=26  Identities=19%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             5664107999825983018889999999
Q gi|254780293|r   97 QDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        97 ~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ...+|||.|  -|||..|-+-|+.++-.
T Consensus         2 ~~~~yDViI--IGaGpAGl~aA~~lar~   27 (168)
T 1trb_A            2 TTKHSKLLI--LGSGPAGYTAAVYAARA   27 (168)
T ss_dssp             CEEEEEEEE--ECCSHHHHHHHHHHHTT
T ss_pred             CCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             976355999--99879999999999978


No 16 
>>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* (A:1-146,A:288-338)
Probab=47.20  E-value=17  Score=16.84  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=18.2

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             66410799982598301888999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ..+|||.|  -|||..|-+-|++++-
T Consensus         2 s~~yDViI--IGaGpaGl~aA~~la~   25 (197)
T 1zk7_A            2 EPPVQVAV--IGSGGAAMAAALKAVE   25 (197)
T ss_dssp             CCCCEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             98862999--8888899999999985


No 17 
>>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} (A:)
Probab=46.69  E-value=11  Score=17.93  Aligned_cols=81  Identities=19%  Similarity=0.224  Sum_probs=50.0

Q ss_pred             EEECCCEEEEEEE---ECCCCEEEEECCCHHHHCCCH-----------------------------HHHHHHHHHHHHHC
Q ss_conf             3111210899999---818973999410088844698-----------------------------99999999998738
Q gi|254780293|r   49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYFTQD-----------------------------LLVLNIKRPFNTVS   96 (170)
Q Consensus        49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~~~-----------------------------~~r~~i~~Pl~~~~   96 (170)
                      +|-=||+..+..+   .|-.|.|.+||.++..+=+..                             ...+.+...+..++
T Consensus        44 sGsGKSTL~~ll~gl~~p~~G~I~~~g~di~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~e~~~~~~~~~~  123 (247)
T 2ff7_A           44 SGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG  123 (247)
T ss_dssp             TTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             99869999999963247888999999999502133666181899947775678530013134654344899999999973


Q ss_pred             C-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             5-------664107999825983018889999999999765
Q gi|254780293|r   97 Q-------DNMYDVFATVSGGGLSGQASAICHGVAKALTYF  130 (170)
Q Consensus        97 ~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~  130 (170)
                      .       ...+|-.+.-.|..+|| -+.=|++|||||+.-
T Consensus       124 ~~~~i~~l~~g~~t~i~~~g~~LSg-GQ~QRialARAl~~~  163 (247)
T 2ff7_A          124 AHDFISELREGYNTIVGEQGAGLSG-GQRQRIAIARALVNN  163 (247)
T ss_dssp             CHHHHHTSTTGGGCBCSTTTTCCCH-HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHCCCCCCCCCCCH-HHCEEEECHHHHHCC
T ss_conf             0345554102201110586786585-562022005455127


No 18 
>>2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} (A:1-178,A:237-316,A:525-595)
Probab=44.86  E-value=20  Score=16.47  Aligned_cols=27  Identities=33%  Similarity=0.217  Sum_probs=20.5

Q ss_pred             CCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             85664107999825983018889999999
Q gi|254780293|r   96 SQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        96 ~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ....+|||.|  -|||.+|-+-|.+|+=+
T Consensus        14 ~~~~~yDvIV--VGaG~aGl~aA~~La~a   40 (329)
T 2f5v_A           14 GMDIKYDVVI--VGSGPIGCTYARELVGA   40 (329)
T ss_dssp             -CCSEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             9998004899--89678999999999849


No 19 
>>2cul_A Glucose-inhibited division protein A-related protein, probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus HB8} (A:1-122,A:186-232)
Probab=44.58  E-value=17  Score=16.85  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=16.7

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             64107999825983018889999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      .+|||.|  -|+|.+|-+-|+.++-.
T Consensus         2 ~~yDViI--IGAGpAGL~AA~~Lar~   25 (169)
T 2cul_A            2 AAYQVLI--VGAGFSGAETAFWLAQK   25 (169)
T ss_dssp             CCCSEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             9789899--99688999999999988


No 20 
>>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:1-122,A:268-335)
Probab=44.27  E-value=17  Score=16.82  Aligned_cols=31  Identities=23%  Similarity=0.347  Sum_probs=20.7

Q ss_pred             HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             987385664107999825983018889999999
Q gi|254780293|r   92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      .........|||.|  -|||..|-+-|+.++-.
T Consensus         6 ~~~~~~~~~~DViV--IGaGpAGl~aA~~la~~   36 (190)
T 2a87_A            6 VHDRAHHPVRDVIV--IGSGPAGYTAALYAARA   36 (190)
T ss_dssp             ----CCCCCEEEEE--ECCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             98767798887999--89879999999999988


No 21 
>>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} (A:1-122,A:268-319)
Probab=43.92  E-value=20  Score=16.45  Aligned_cols=31  Identities=19%  Similarity=0.403  Sum_probs=21.7

Q ss_pred             HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             987385664107999825983018889999999
Q gi|254780293|r   92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      +........|||.|  -|||..|-+-|+.++-.
T Consensus         8 ~~~~~~~~~~DvvI--IGaGpaGl~aA~~la~~   38 (174)
T 3cty_A            8 VSSEEKERDFDVVI--VGAGAAGFSAAVYAARS   38 (174)
T ss_dssp             ------CCEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             67645577468999--89789999999999978


No 22 
>>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:1-193,A:392-447)
Probab=42.28  E-value=19  Score=16.50  Aligned_cols=34  Identities=32%  Similarity=0.331  Sum_probs=23.5

Q ss_pred             HHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             999998738566410799982598301888999999
Q gi|254780293|r   88 IKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        88 i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ...|+.......+|||.|  -|||++|-+-|+.++=
T Consensus        14 ~~~~~~~~~~~~~~DViI--IGaG~aGL~aA~~La~   47 (249)
T 2i0z_A           14 GTENLYFQSNAMHYDVIV--IGGGPSGLMAAIGAAE   47 (249)
T ss_dssp             -----------CCCSEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             655045667777339699--8967999999999997


No 23 
>>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} (A:1-152,A:314-354)
Probab=42.16  E-value=17  Score=16.83  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=12.4

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             641079998259830188899999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ..|||.|  -|+|.+|-+-|++++
T Consensus         4 ~~yDviV--IGaG~aGl~aA~~aa   25 (193)
T 1v59_A            4 KSHDVVI--IGGGPAGYVAAIKAA   25 (193)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             7423899--998889999999999


No 24 
>>2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein, oxidoreductase, chimeric enzyme, thiol-mediated detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma mansoni} PDB: 3h4k_A* (A:107-257,A:412-463)
Probab=41.52  E-value=22  Score=16.17  Aligned_cols=15  Identities=33%  Similarity=0.443  Sum_probs=6.6

Q ss_pred             ECCCCCHHHHHHHHH
Q ss_conf             259830188899999
Q gi|254780293|r  108 SGGGLSGQASAICHG  122 (170)
Q Consensus       108 ~GGG~sgQa~Airla  122 (170)
                      -|||..|-+-|+.++
T Consensus         7 IGaGpaGl~aA~~la   21 (203)
T 2v6o_A            7 IGGGSGGLAAGKEAA   21 (203)
T ss_dssp             ECCSHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             897889999999999


No 25 
>>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} (A:187-322,A:469-521)
Probab=41.42  E-value=24  Score=15.89  Aligned_cols=28  Identities=29%  Similarity=0.557  Sum_probs=21.5

Q ss_pred             HCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             385664107999825983018889999999
Q gi|254780293|r   95 VSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        95 ~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ......|||.|  -|||..|-+-|+.++-+
T Consensus        21 ~~~~~~yDViV--IGaGpAGl~aA~~lar~   48 (189)
T 1hyu_A           21 LNKRDAYDVLI--VGSGPAGAAAAVYSARK   48 (189)
T ss_dssp             HHTSCCEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             77799885899--96789999999999978


No 26 
>>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* (A:1-147,A:300-349)
Probab=41.35  E-value=21  Score=16.30  Aligned_cols=23  Identities=30%  Similarity=0.231  Sum_probs=17.6

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             6410799982598301888999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      .+|||.|  -|+|..|-+-|++++-
T Consensus         5 ~~yDviV--IGaG~aGl~aA~~la~   27 (197)
T 1zmd_A            5 IDADVTV--IGSGPGGYVAAIKAAQ   27 (197)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             6248899--8988899999999986


No 27 
>>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* (A:1-121,A:252-323)
Probab=41.22  E-value=24  Score=15.92  Aligned_cols=14  Identities=21%  Similarity=0.275  Sum_probs=5.8

Q ss_pred             ECCCCCHHHHHHHH
Q ss_conf             25983018889999
Q gi|254780293|r  108 SGGGLSGQASAICH  121 (170)
Q Consensus       108 ~GGG~sgQa~Airl  121 (170)
                      -|||..|-+-|+.+
T Consensus        21 IGgGpaGlsaA~~l   34 (193)
T 3f8d_A           21 VGLGPAAYGAALYS   34 (193)
T ss_dssp             ECCSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH
T ss_conf             89888999999999


No 28 
>>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:1-156,A:310-360)
Probab=40.93  E-value=17  Score=16.76  Aligned_cols=30  Identities=30%  Similarity=0.297  Sum_probs=21.4

Q ss_pred             HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             98738566410799982598301888999999
Q gi|254780293|r   92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      -........|||.|  -|||..|.+-|++++-
T Consensus        12 ~~~~~~~~~yDViV--IGaGpAGl~aA~~la~   41 (207)
T 3dk9_A           12 PPAAGAVASYDYLV--IGGGSGGLASARRAAE   41 (207)
T ss_dssp             -----CEEECSEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             99989868737799--8888899999999996


No 29 
>>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:1-126,A:284-326)
Probab=40.47  E-value=22  Score=16.17  Aligned_cols=25  Identities=24%  Similarity=0.206  Sum_probs=19.0

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             664107999825983018889999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..+|||.|  -|||..|-+-|+.++-+
T Consensus         8 ~~~yDVII--IGaGpAGl~AA~~aar~   32 (169)
T 3d8x_A            8 HVHNKVTI--IGSGPAAHTAAIYLARA   32 (169)
T ss_dssp             -CEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             76189999--99869999999999978


No 30 
>>1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum} (A:1-146,A:306-346)
Probab=40.08  E-value=23  Score=15.98  Aligned_cols=24  Identities=33%  Similarity=0.428  Sum_probs=15.3

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             66410799982598301888999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ..+|||.|  -|||.+|-+-|++++-
T Consensus         4 s~~yDViV--IGaGpAGl~AA~~aa~   27 (187)
T 1dxl_A            4 SDENDVVI--IGGGPGGYVAAIKAAQ   27 (187)
T ss_dssp             CCCCCEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             88688899--8888899999999997


No 31 
>>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} (A:1-139,A:282-332)
Probab=39.90  E-value=24  Score=15.95  Aligned_cols=22  Identities=41%  Similarity=0.513  Sum_probs=14.0

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             641079998259830188899999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      .+|||.|  -|||..|.+-|++++
T Consensus         3 ~~yDviI--IGaGpAGl~aA~~la   24 (190)
T 1ges_A            3 KHYDYIA--IGGGSGGIASINRAA   24 (190)
T ss_dssp             CEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             7688999--887889999999999


No 32 
>>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} (A:1-152,A:296-346)
Probab=39.77  E-value=24  Score=15.90  Aligned_cols=21  Identities=24%  Similarity=0.439  Sum_probs=12.2

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             10799982598301888999999
Q gi|254780293|r  101 YDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus       101 ~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      |||.|  -|||..|-+-|++++=
T Consensus         3 yDviI--IG~GpaGl~aA~~aa~   23 (203)
T 1xdi_A            3 TRIVI--LGGGPAGYEAALVAAT   23 (203)
T ss_dssp             EEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCEEE--ECCCHHHHHHHHHHHH
T ss_conf             88899--8788899999999985


No 33 
>>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} (A:1-143,A:294-344)
Probab=39.77  E-value=25  Score=15.77  Aligned_cols=13  Identities=38%  Similarity=0.654  Sum_probs=4.7

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             5983018889999
Q gi|254780293|r  109 GGGLSGQASAICH  121 (170)
Q Consensus       109 GGG~sgQa~Airl  121 (170)
                      |+|..|-.-|+++
T Consensus         9 GaGpaG~~AA~~a   21 (194)
T 2qae_A            9 GGGPGGYVASIKA   21 (194)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9788999999999


No 34 
>>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 1s1i_X 2wwa_N 2ww9_N (N:)
Probab=39.60  E-value=21  Score=16.32  Aligned_cols=40  Identities=10%  Similarity=0.091  Sum_probs=29.9

Q ss_pred             EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
Q ss_conf             1079998259830188899999999997657634487997
Q gi|254780293|r  101 YDVFATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKK  140 (170)
Q Consensus       101 ~Di~~~V~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~  140 (170)
                      |+..+.-.-||-++....+|-.|||.|..++..-+..+++
T Consensus        29 ~~LR~qk~Tg~~~skIk~vRK~IARvlTV~nekq~~~lrk   68 (120)
T 2wwb_N           29 AELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQ   68 (120)
T ss_dssp             HHTCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989999978880789999999999999984999999999


No 35 
>>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (G:1-46,G:242-298,G:405-453)
Probab=39.24  E-value=26  Score=15.68  Aligned_cols=30  Identities=20%  Similarity=0.240  Sum_probs=21.0

Q ss_pred             HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             99873856641079998259830188899999
Q gi|254780293|r   91 PFNTVSQDNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        91 Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      |+........|||.|  -|+|+.|-.-|..++
T Consensus         2 pm~~~~~~~~~DviI--IG~G~aG~~~A~~la   31 (152)
T 2bcg_G            2 HMDQETIDTDYDVIV--LGTGITECILSGLLS   31 (152)
T ss_dssp             -----CCCCBCSEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             998133699887899--895989999999999


No 36 
>>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} (A:1-38,A:209-240,A:336-384)
Probab=38.53  E-value=26  Score=15.75  Aligned_cols=23  Identities=17%  Similarity=0.235  Sum_probs=15.1

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             6410799982598301888999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ..||+.|  -|+|++|-+-|..++-
T Consensus         2 k~~DviI--VGAG~aG~~~A~~La~   24 (119)
T 2bi7_A            2 KSKKILI--VGAGFSGAVIGRQLAE   24 (119)
T ss_dssp             CCCEEEE--ECCSHHHHHHHHHHHT
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             9687999--8960999999999986


No 37 
>>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} (A:1-68,A:152-323)
Probab=38.03  E-value=21  Score=16.30  Aligned_cols=72  Identities=19%  Similarity=0.196  Sum_probs=47.0

Q ss_pred             EEEEEEC----CCCEEEEECCCHHHH--CCCHHHHH-HHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999981----897399941008884--46989999-9999998738566410799982598301888999999999976
Q gi|254780293|r   57 ARVWIKS----GSGKFTINYVDISKY--FTQDLLVL-NIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAKALTY  129 (170)
Q Consensus        57 ArV~l~~----GsG~I~INgk~~~~Y--f~~~~~r~-~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~  129 (170)
                      ++||+|-    =+|.|+++|--....  |.|+.... .-.--+++....++.|..+--.|||-+      -.||+++|..
T Consensus        41 ~~i~~K~E~~~ptGS~K~Rga~~~i~~l~~np~~~~G~~t~g~EI~~Q~~~~D~vv~~vG~GG~------~~Gi~~~lk~  114 (240)
T 1v71_A           41 AEVFFKCENFQKMGAFKFRGALNALSQLYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGL------LSGSALAARH  114 (240)
T ss_dssp             SEEEEEEGGGSGGGBTHHHHHHHHHTTCSSSHHHHHHHTHHHHHHHHHHCCCSEEEEECSSSHH------HHHHHHHHHH
T ss_pred             CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH------HHHHHHHHHH
T ss_conf             9799997889987681999999999986551323531667999999973899989985781888------9999999997


Q ss_pred             HCHHH
Q ss_conf             57634
Q gi|254780293|r  130 FQPDL  134 (170)
Q Consensus       130 ~~p~~  134 (170)
                      +.|+.
T Consensus       115 ~~~~~  119 (240)
T 1v71_A          115 FAPNC  119 (240)
T ss_dssp             HCTTC
T ss_pred             HCCCC
T ss_conf             49985


No 38 
>>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A (A:)
Probab=37.94  E-value=27  Score=15.59  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=42.3

Q ss_pred             EEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHH-HC-CCCCEEEEEEEECCC--CCHH--HHHHHHHHHHHHHHH
Q ss_conf             999818973999410088844698999999999987-38-566410799982598--3018--889999999999765
Q gi|254780293|r   59 VWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNT-VS-QDNMYDVFATVSGGG--LSGQ--ASAICHGVAKALTYF  130 (170)
Q Consensus        59 V~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~-~~-~~~~~Di~~~V~GGG--~sgQ--a~AirlaIarAL~~~  130 (170)
                      +...+|+|.+.++|.+-..-.   .....+..-+.- .+ ...++|+++++.++.  ..|.  .-|+.+||.-++...
T Consensus        37 ~~~~~g~~~~~~~g~~~~~~~---es~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~G~sa~Laia~ai~sa~~~~  111 (207)
T 1z0w_A           37 PSMSKSEGRVIATGRLQEIAR---EAVMNVSAIIKKYTGRDISNMDVHIQFVGTYEGVEGDSASISIATAVISAIEGI  111 (207)
T ss_dssp             ECC---CCCEECCSTTHHHHH---HHHHHHHHHHHHHHCCCGGGEEEEEEESSCCTTEECCTTBHHHHHHHHHHHHTC
T ss_pred             ECCCCCCCEEEECCCCHHHHH---HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf             633378873897486225788---888999999976310134454400202531123654456389999999985267


No 39 
>>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:1-156,A:302-352)
Probab=37.91  E-value=27  Score=15.65  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=18.3

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             66410799982598301888999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ..+|||.|  -|||..|-+-|++++=
T Consensus         9 ~~~yDviI--IGaGpaGl~aA~~la~   32 (207)
T 2hqm_A            9 TKHYDYLV--IGGGSGGVASARRAAS   32 (207)
T ss_dssp             -CEEEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             97367899--8988899999999996


No 40 
>>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} (A:1-141,A:282-337)
Probab=37.44  E-value=23  Score=16.03  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=11.9

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             41079998259830188899999
Q gi|254780293|r  100 MYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      +|||.|  -|||..|-+-|++++
T Consensus         3 ~YDViV--IGaGpAGl~AA~~aa   23 (197)
T 1ebd_A            3 ETETLV--VGAGPGGYVAAIRAA   23 (197)
T ss_dssp             ECSEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCEEE--ECCCHHHHHHHHHHH
T ss_conf             479899--997889999999999


No 41 
>>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-111,A:252-310)
Probab=37.24  E-value=28  Score=15.50  Aligned_cols=13  Identities=46%  Similarity=0.718  Sum_probs=4.6

Q ss_pred             CCCCCHHHHHHHH
Q ss_conf             5983018889999
Q gi|254780293|r  109 GGGLSGQASAICH  121 (170)
Q Consensus       109 GGG~sgQa~Airl  121 (170)
                      |||.+|-+-|+.+
T Consensus         8 GgGpaGl~aA~~l   20 (170)
T 1fl2_A            8 GSGPAGAAAAIYS   20 (170)
T ss_dssp             CCSHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH
T ss_conf             9879999999999


No 42 
>>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:1-140,A:297-339)
Probab=37.05  E-value=27  Score=15.64  Aligned_cols=22  Identities=32%  Similarity=0.374  Sum_probs=14.6

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             641079998259830188899999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      .+|||.+  -|+|..|.+-|++++
T Consensus         3 ~~yDViV--IGaGpAG~~AA~~aa   24 (183)
T 3l8k_A            3 LKYDVVV--IGAGGAGYHGAFRLA   24 (183)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             7685899--898989999999999


No 43 
>>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* (A:1-139,A:298-337)
Probab=36.71  E-value=27  Score=15.61  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=16.7

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             6641079998259830188899999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ..+|||.|  -|+|..|-.-|++++
T Consensus         4 ~~~yDviV--IGaG~aG~~aA~~aa   26 (179)
T 2eq6_A            4 MKTYDLIV--IGTGPGGYHAAIRAA   26 (179)
T ss_dssp             CEEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             87189999--988889999999999


No 44 
>>2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* (A:1-175,A:337-378)
Probab=35.49  E-value=30  Score=15.32  Aligned_cols=25  Identities=32%  Similarity=0.384  Sum_probs=18.1

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             664107999825983018889999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ...|||.|  -|||.+|-+-|+.|+=+
T Consensus        24 ~~~~DViI--VGaGpAGl~aA~~La~~   48 (217)
T 2zzc_A           24 SYDYDLII--IGGGSGGLAAAKEAAQY   48 (217)
T ss_dssp             CCSEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             68999899--89788999999999968


No 45 
>>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} (A:145-435)
Probab=35.46  E-value=26  Score=15.68  Aligned_cols=44  Identities=18%  Similarity=0.203  Sum_probs=27.3

Q ss_pred             CCEEEEEEEECCCCCHH-------HHHHHHHHHHHHH--------HHCHHHHHHHHHCCC
Q ss_conf             64107999825983018-------8899999999997--------657634487997798
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQ-------ASAICHGVAKALT--------YFQPDLRPQIKKGGF  143 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQ-------a~AirlaIarAL~--------~~~p~~r~~Lk~~gl  143 (170)
                      ++-|+.... |||+.|.       +.|+|.||--++.        +..|+|+..|.+-|.
T Consensus       229 G~~D~il~~-GGGi~gHPdG~~aGa~A~RqA~ea~~~G~~l~e~Ak~~~eL~~Ale~wg~  287 (291)
T 1ykw_A          229 GNVDFGFVP-GRGVFGHPMGPKAGAKSIRQAWEAIEQGISIETWAETHPELQAMVDQSLL  287 (291)
T ss_dssp             CSSCSEECB-SSSSSSCTTCHHHHHHHHHHHHHHHHTTCCHHHHHTTCHHHHHHHHC---
T ss_pred             CCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH
T ss_conf             996389976-84134599666889999999999998499979986339899999999866


No 46 
>>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B (B:153-218)
Probab=35.32  E-value=19  Score=16.48  Aligned_cols=39  Identities=26%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCC
Q ss_conf             259830188899999999997657634487997798335755
Q gi|254780293|r  108 SGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSR  149 (170)
Q Consensus       108 ~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R  149 (170)
                      .+||+|.+--|-+++||-.|..-   .-..-.+.|+|-||--
T Consensus        13 ~~~~ita~e~A~~~giS~~lA~E---~Ll~AE~~G~lCRDes   51 (66)
T 3cuq_B           13 EKGSLTSEEFAKLVGMSVLLAKE---RLLLAEKMGHLCRDDS   51 (66)
T ss_dssp             HTSCBCHHHHHHHHTCCHHHHHH---HHHHHHHTTSEEEEES
T ss_pred             CCCCCCHHHHHHHHCCCHHHHHH---HHHHHHHCCCEEEECC
T ss_conf             38996899999996988999999---9999997797899788


No 47 
>>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:1-58,A:216-269,A:483-546)
Probab=35.05  E-value=27  Score=15.59  Aligned_cols=23  Identities=35%  Similarity=0.527  Sum_probs=17.3

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             6641079998259830188899999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ...|||.|  -|+|.+|-.-|.+|+
T Consensus        11 ~~~~DvvI--IGaG~aG~~~A~~La   33 (176)
T 2jbv_A           11 DREFDYIV--VGGGSAGAAVAARLS   33 (176)
T ss_dssp             CCEEEEEE--ECCSHHHHHHHHHHT
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             99433899--896489999999997


No 48 
>>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} (A:1-49,A:118-239,A:341-469)
Probab=34.58  E-value=31  Score=15.24  Aligned_cols=14  Identities=29%  Similarity=0.359  Sum_probs=5.5

Q ss_pred             ECCCCCHHHHHHHH
Q ss_conf             25983018889999
Q gi|254780293|r  108 SGGGLSGQASAICH  121 (170)
Q Consensus       108 ~GGG~sgQa~Airl  121 (170)
                      -|+|.+|-+-|+.+
T Consensus        14 ~g~g~~~~~~~~~~   27 (300)
T 1pn0_A           14 VGAGPAGLMAARVL   27 (300)
T ss_dssp             ECCSHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH
T ss_conf             89398999999998


No 49 
>>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:115-249,A:384-462)
Probab=34.55  E-value=31  Score=15.24  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=15.8

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             64107999825983018889999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..|||.|  -|+|.+|-+-|+.++-+
T Consensus        13 ~~~DViV--IGaG~aGl~aA~~la~~   36 (214)
T 2gag_A           13 VHTDVLV--VGAGPAGLAAAREASRS   36 (214)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             3288999--99419999999999978


No 50 
>>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:1-63,A:202-257,A:473-536)
Probab=32.77  E-value=31  Score=15.22  Aligned_cols=26  Identities=31%  Similarity=0.389  Sum_probs=18.1

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             5664107999825983018889999999
Q gi|254780293|r   97 QDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        97 ~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ....||+.|  -|||..|-.-|.+|+=.
T Consensus        23 ~~~~~Dvvi--vG~G~aG~~~A~~l~~g   48 (183)
T 1ju2_A           23 LEGSYDYVI--VGGGTSGCPLAATLSEK   48 (183)
T ss_dssp             SEEEEEEEE--ECCSTTHHHHHHHHTTT
T ss_pred             CCCCCCEEE--ECCCHHHHHHHHHHHCC
T ss_conf             479635799--89538999999998579


No 51 
>>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:117-228,A:312-349)
Probab=32.39  E-value=31  Score=15.24  Aligned_cols=16  Identities=31%  Similarity=0.449  Sum_probs=14.0

Q ss_pred             EEEECCCEEEEEEEEC
Q ss_conf             1311121089999981
Q gi|254780293|r   48 ATGKRKTSIARVWIKS   63 (170)
Q Consensus        48 ~tGrRKtsvArV~l~~   63 (170)
                      +-||+.||.|.|.+.|
T Consensus        90 s~~R~hTS~asV~VlP  105 (150)
T 1zbt_A           90 SQGRVHTSTATVLVXP  105 (150)
T ss_dssp             SSCCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
T ss_conf             7774268888999971


No 52 
>>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} (A:)
Probab=32.32  E-value=34  Score=15.00  Aligned_cols=88  Identities=15%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             CCCCCCEEEEEC--CCEEEE--EEEECCCCEEEEECCCHHHHCCC-HHHHHHHHHHHH---HH-CCCCCEEEEEEEECCC
Q ss_conf             543550013111--210899--99981897399941008884469-899999999998---73-8566410799982598
Q gi|254780293|r   41 DQWQRSYATGKR--KTSIAR--VWIKSGSGKFTINYVDISKYFTQ-DLLVLNIKRPFN---TV-SQDNMYDVFATVSGGG  111 (170)
Q Consensus        41 d~~g~~~~tGrR--KtsvAr--V~l~~GsG~I~INgk~~~~Yf~~-~~~r~~i~~Pl~---~~-~~~~~~Di~~~V~GGG  111 (170)
                      |.-|..++.+-.  ....-+  +...+|++.+.+.+..-...... ...+..++.-..   +. .....+||++++.++.
T Consensus         9 ~~~g~v~~~~v~~~~~~~~~iE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~i~~~~~~   88 (200)
T 1rre_A            9 NRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVXQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGA   88 (200)
T ss_dssp             -CCEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTT
T ss_pred             CCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCC
T ss_conf             96279987799579987799999998268863223455401257899999999998665067701332230345421465


Q ss_pred             C--CHHHH--HHHHHHHHHHH
Q ss_conf             3--01888--99999999997
Q gi|254780293|r  112 L--SGQAS--AICHGVAKALT  128 (170)
Q Consensus       112 ~--sgQa~--AirlaIarAL~  128 (170)
                      .  .|.+-  |+.+||.-++.
T Consensus        89 ~~~~G~s~~Laia~ai~sa~~  109 (200)
T 1rre_A           89 TPKDGPAAGIAXCTALVSCLT  109 (200)
T ss_dssp             SCEESSTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
T ss_conf             445663378999999999985


No 53 
>>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B crossover motif; 2.30A {Filobasidiella neoformans} (A:)
Probab=32.06  E-value=34  Score=14.97  Aligned_cols=84  Identities=12%  Similarity=0.037  Sum_probs=53.3

Q ss_pred             EEECCCEEEEEEEE-CCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHH
Q ss_conf             31112108999998-189739994100888446989999999999873856641079998-2598301888999999999
Q gi|254780293|r   49 TGKRKTSIARVWIK-SGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATV-SGGGLSGQASAICHGVAKA  126 (170)
Q Consensus        49 tGrRKtsvArV~l~-~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V-~GGG~sgQa~AirlaIarA  126 (170)
                      .--=-.|.|+|.+. .|-+-+..|...-.+.... ..-+.+..=|.-.-......+++.+ .|.-..=+++|+--|++||
T Consensus       102 ~vPMDEala~v~vDlsGRp~~~~~~~~~~~~iG~-~~~el~~~ff~sla~~a~~tlHi~~~~G~N~HH~~Ea~FKalg~A  180 (202)
T 1rhy_A          102 YAPLDESLSRAVIDISSRPYFMCHLPFTREKVGD-LSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALA  180 (202)
T ss_dssp             EEEETTEEEEEEEECSSCCEEEEECCCCSSEETT-EETHHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEECCCCCCCEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             9850641146742678985242025766442477-535658999999983477369999874587078999999999999


Q ss_pred             HHHH-CHH
Q ss_conf             9765-763
Q gi|254780293|r  127 LTYF-QPD  133 (170)
Q Consensus       127 L~~~-~p~  133 (170)
                      |-.. .+.
T Consensus       181 Lr~A~~~~  188 (202)
T 1rhy_A          181 IRMAISRT  188 (202)
T ss_dssp             HHHHHCC-
T ss_pred             HHHHHCCC
T ss_conf             99984823


No 54 
>>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:1-69,A:140-227,A:320-420)
Probab=31.91  E-value=33  Score=15.07  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=11.4

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             641079998259830188899999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ..|||.|  -|+|++|-+-|++|+
T Consensus        31 ~~~~~~i--~g~g~~g~~~a~~~~   52 (258)
T 2dkh_A           31 SQVDVLI--VGCGPAGLTLAAQLA   52 (258)
T ss_dssp             SEEEEEE--ECCSHHHHHHHHHHT
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             8689999--993989999999987


No 55 
>>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} (A:1-118,A:276-335)
Probab=31.48  E-value=35  Score=14.91  Aligned_cols=12  Identities=25%  Similarity=0.493  Sum_probs=4.0

Q ss_pred             CCCCCHHHHHHH
Q ss_conf             598301888999
Q gi|254780293|r  109 GGGLSGQASAIC  120 (170)
Q Consensus       109 GGG~sgQa~Air  120 (170)
                      |||.+|-+-|+.
T Consensus        12 GaGPaGL~AA~~   23 (178)
T 2zbw_A           12 GAGPTGLFAGFY   23 (178)
T ss_dssp             CCSHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
T ss_conf             986999999999


No 56 
>>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:1-142,A:285-334)
Probab=31.14  E-value=35  Score=14.88  Aligned_cols=24  Identities=29%  Similarity=0.374  Sum_probs=17.9

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             64107999825983018889999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      .+|||.|  -|||..|-+-|++++-.
T Consensus         4 ~~yDviV--IGaGpAGl~aA~~la~~   27 (192)
T 1lvl_A            4 IQTTLLI--IGGGPGGYVAAIRAGQL   27 (192)
T ss_dssp             EECSEEE--ECCSHHHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             5289999--96798999999999978


No 57 
>>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, disulfide oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} (A:1-120,A:275-333)
Probab=30.11  E-value=37  Score=14.77  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=18.5

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             64107999825983018889999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..|||.|  -|||+.|-+-||.++-+
T Consensus         7 ~~yDviI--IG~GPAGlsAAi~a~r~   30 (179)
T 1vdc_A            7 HNTRLCI--VGSGPAAHTAAIYAARA   30 (179)
T ss_dssp             EEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             6987999--99769999999999988


No 58 
>>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:1-46,B:215-272,B:525-566)
Probab=29.64  E-value=37  Score=14.76  Aligned_cols=21  Identities=24%  Similarity=0.311  Sum_probs=14.2

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             41079998259830188899999
Q gi|254780293|r  100 MYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      .|||.|  -|+|.+|-.-|.+|+
T Consensus         2 ~~Dvii--iG~G~~G~~~A~~l~   22 (146)
T 3fim_B            2 DFDYVV--VGAGNAGNVVAARLT   22 (146)
T ss_dssp             CEEEEE--SCCSTTHHHHHHHHT
T ss_pred             CCCEEE--ECCCHHHHHHHHHHH
T ss_conf             878799--896489999999997


No 59 
>>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} (A:1-79,A:181-237,A:333-367)
Probab=29.30  E-value=36  Score=14.81  Aligned_cols=17  Identities=29%  Similarity=0.304  Sum_probs=10.4

Q ss_pred             EECCCCCHHHHHHHHHH
Q ss_conf             82598301888999999
Q gi|254780293|r  107 VSGGGLSGQASAICHGV  123 (170)
Q Consensus       107 V~GGG~sgQa~AirlaI  123 (170)
                      |-|+|++|-+-|.+++=
T Consensus         6 IVGAG~AGl~aA~~LAq   22 (171)
T 1i8t_A            6 IVGSGLFGAVCANELKK   22 (171)
T ss_dssp             EECCSHHHHHHHHHHGG
T ss_pred             EECCCHHHHHHHHHHHH
T ss_conf             98976899999999997


No 60 
>>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} (A:1-41,A:120-191,A:298-401)
Probab=29.13  E-value=38  Score=14.66  Aligned_cols=11  Identities=45%  Similarity=0.821  Sum_probs=4.3

Q ss_pred             ECCCCCHHHHH
Q ss_conf             25983018889
Q gi|254780293|r  108 SGGGLSGQASA  118 (170)
Q Consensus       108 ~GGG~sgQa~A  118 (170)
                      -|+|+.|-+-|
T Consensus        11 vGag~~G~~~a   21 (217)
T 3ihg_A           11 VGAGLGGLSTA   21 (217)
T ss_dssp             ECCSHHHHHHH
T ss_pred             ECCCHHHHHHH
T ss_conf             99298999999


No 61 
>>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} (A:1-76,A:214-277,A:412-471)
Probab=28.94  E-value=39  Score=14.64  Aligned_cols=15  Identities=47%  Similarity=0.631  Sum_probs=6.6

Q ss_pred             ECCCCCHHHHHHHHH
Q ss_conf             259830188899999
Q gi|254780293|r  108 SGGGLSGQASAICHG  122 (170)
Q Consensus       108 ~GGG~sgQa~Airla  122 (170)
                      -|+|++|-+-|+.|+
T Consensus        10 IGaG~aGl~aA~~l~   24 (200)
T 1s3e_A           10 VGGGISGMAAAKLLH   24 (200)
T ss_dssp             ECCBHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             897889999999998


No 62 
>>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} (A:425-495)
Probab=28.27  E-value=39  Score=14.60  Aligned_cols=44  Identities=14%  Similarity=0.054  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHCC-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999987385-------66410799982598301888999999999976
Q gi|254780293|r   85 VLNIKRPFNTVSQ-------DNMYDVFATVSGGGLSGQASAICHGVAKALTY  129 (170)
Q Consensus        85 r~~i~~Pl~~~~~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~  129 (170)
                      ...+...+..++.       ...++-.+.-.|..+| .-+--|.||||||+.
T Consensus        20 ~~~i~~~~~~~~l~~~i~~~~~g~~t~~~~~g~~LS-gGqrQrialARAl~~   70 (71)
T 2hyd_A           20 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS-GGQKQRLSIARIFLN   70 (71)
T ss_dssp             HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC-HHHHHHHHHHHHHHC
T ss_conf             999999999949869997366877888668998589-999999999999960


No 63 
>>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} (A:1-48,A:115-153,A:214-284,A:456-504)
Probab=27.16  E-value=41  Score=14.45  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=16.5

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             64107999825983018889999999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..|||.  |-|||.+|-+-|+.++-.
T Consensus         4 ~~~dvi--IIGaG~aGl~aA~~l~~~   27 (207)
T 1n4w_A            4 GYVPAV--VIGTGYGAAVSALRLGEA   27 (207)
T ss_dssp             CEEEEE--EECCSHHHHHHHHHHHHT
T ss_pred             CCCCEE--EECCCHHHHHHHHHHHHC
T ss_conf             889699--979688999999999868


No 64 
>>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365)
Probab=27.12  E-value=35  Score=14.88  Aligned_cols=17  Identities=41%  Similarity=0.497  Sum_probs=14.2

Q ss_pred             EEEECCCEEEEEEEECC
Q ss_conf             13111210899999818
Q gi|254780293|r   48 ATGKRKTSIARVWIKSG   64 (170)
Q Consensus        48 ~tGrRKtsvArV~l~~G   64 (170)
                      .-|||+||.|.|.+.|-
T Consensus        87 ~~~rrhTs~~~V~VlP~  103 (172)
T 2ihr_1           87 ASGRRHTSFAGVEVIPE  103 (172)
T ss_dssp             SSCCEEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEECC
T ss_conf             65522456789999544


No 65 
>>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} (A:1-85,A:242-323,A:444-504)
Probab=26.44  E-value=43  Score=14.37  Aligned_cols=17  Identities=41%  Similarity=0.477  Sum_probs=10.0

Q ss_pred             EEECCCCCHHHHHHHHH
Q ss_conf             98259830188899999
Q gi|254780293|r  106 TVSGGGLSGQASAICHG  122 (170)
Q Consensus       106 ~V~GGG~sgQa~Airla  122 (170)
                      -|-|||++|-+-|..++
T Consensus        17 vIIGaGisGLsaA~~La   33 (228)
T 1sez_A           17 AVIGAGVSGLAAAYKLK   33 (228)
T ss_dssp             EEECCSHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHH
T ss_conf             99897889999999998


No 66 
>>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} (A:1-144,A:292-342)
Probab=26.19  E-value=43  Score=14.34  Aligned_cols=21  Identities=24%  Similarity=0.286  Sum_probs=14.7

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             41079998259830188899999
Q gi|254780293|r  100 MYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      +|||.  |-|||..|-+-|++++
T Consensus         8 ~yDvi--IIGaGpaG~~aA~~la   28 (195)
T 3ic9_A            8 NVDVA--IIGTGTAGXGAYRAAK   28 (195)
T ss_dssp             EEEEE--EECCSHHHHHHHHHHH
T ss_pred             CCCEE--EECCCHHHHHHHHHHH
T ss_conf             87989--9888889999999998


No 67 
>>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} (A:1-119,A:273-325)
Probab=25.64  E-value=44  Score=14.28  Aligned_cols=25  Identities=44%  Similarity=0.656  Sum_probs=17.0

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             664107999825983018889999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ...|||.|  -|||..|.+-|+.++-+
T Consensus         6 ~~~~DviI--IG~GPAGlsAAiyaar~   30 (172)
T 2q7v_A            6 AHDYDVVI--IGGGPAGLTAAIYTGRA   30 (172)
T ss_dssp             CEEEEEEE--ECCSHHHHHHHHHHHHT
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             87799999--99879999999999978


No 68 
>>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} (A:1-224,A:375-459)
Probab=24.99  E-value=45  Score=14.20  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=9.0

Q ss_pred             EEEEE-EECC---CCCHHHHHHHHH
Q ss_conf             07999-8259---830188899999
Q gi|254780293|r  102 DVFAT-VSGG---GLSGQASAICHG  122 (170)
Q Consensus       102 Di~~~-V~GG---G~sgQa~Airla  122 (170)
                      |+.+. .+|+   +...-..|...|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~  267 (309)
T 2bs2_A          243 EAACWDMHGFNRLGGNSVSEAVVAG  267 (309)
T ss_dssp             GGEECCSSTTCCCTTHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             5530443256546765333333104


No 69 
>>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, X-RAY crystallography, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} (A:)
Probab=24.89  E-value=46  Score=14.19  Aligned_cols=79  Identities=13%  Similarity=0.057  Sum_probs=48.7

Q ss_pred             ECCCEEEEEEEE-CCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHHHH
Q ss_conf             112108999998-189739994100888446989999999999873856641079998-259830188899999999997
Q gi|254780293|r   51 KRKTSIARVWIK-SGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATV-SGGGLSGQASAICHGVAKALT  128 (170)
Q Consensus        51 rRKtsvArV~l~-~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V-~GGG~sgQa~AirlaIarAL~  128 (170)
                      -=-.|.|+|.+. -|-+-+..|...-.+..... .-+.+..=|.-.-......+++.+ .|.-..-+++|+--|++|||-
T Consensus       106 PMDEala~v~vDlsGRp~~~~~~~~~~~~iG~~-~~el~~~Ff~s~a~~a~~tlHi~~~~G~N~HH~~Ea~FKalg~ALr  184 (207)
T 2f1d_A          106 PLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTY-DTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALR  184 (207)
T ss_dssp             EETTEEEEEEEECCSSCEEEEECCCSSSEETTE-ETTHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEEECCCCCCEEECCCCCCCCCCCC-CCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             364418999996588963464277654424876-7067899999876367648999988557728999999999999999


Q ss_pred             HH
Q ss_conf             65
Q gi|254780293|r  129 YF  130 (170)
Q Consensus       129 ~~  130 (170)
                      ..
T Consensus       185 ~A  186 (207)
T 2f1d_A          185 QA  186 (207)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             98


No 70 
>>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424)
Probab=24.53  E-value=46  Score=14.15  Aligned_cols=22  Identities=18%  Similarity=0.188  Sum_probs=12.7

Q ss_pred             CEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             410799982598301888999999
Q gi|254780293|r  100 MYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ++||.|  -|||++|-+-|+.++-
T Consensus         6 k~DVII--IGAGiAGLSAA~~LAk   27 (191)
T 2b9w_A            6 DSRIAI--IGAGPAGLAAGMYLEQ   27 (191)
T ss_dssp             TCCEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             998999--8984899999999985


No 71 
>>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:84-191,A:274-312)
Probab=24.43  E-value=43  Score=14.36  Aligned_cols=16  Identities=31%  Similarity=0.314  Sum_probs=13.8

Q ss_pred             EEEECCCEEEEEEEEC
Q ss_conf             1311121089999981
Q gi|254780293|r   48 ATGKRKTSIARVWIKS   63 (170)
Q Consensus        48 ~tGrRKtsvArV~l~~   63 (170)
                      .-||||||.|.|.+.|
T Consensus        86 ~~~kr~ts~v~V~vlP  101 (147)
T 1rq0_A           86 SGGRIHTSTATVAVLP  101 (147)
T ss_dssp             CSCCCEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEE
T ss_conf             7675566767999997


No 72 
>>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* (A:1-136,A:282-331)
Probab=23.35  E-value=49  Score=14.01  Aligned_cols=15  Identities=33%  Similarity=0.446  Sum_probs=6.0

Q ss_pred             ECCCCCHHHHHHHHH
Q ss_conf             259830188899999
Q gi|254780293|r  108 SGGGLSGQASAICHG  122 (170)
Q Consensus       108 ~GGG~sgQa~Airla  122 (170)
                      -|||..|-+-|++++
T Consensus         7 IG~GpaG~~aA~~aa   21 (186)
T 2yqu_A            7 IGAGPGGYVAAIRAA   21 (186)
T ss_dssp             ECCSHHHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHHH
T ss_conf             898889999999998


No 73 
>>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365)
Probab=23.33  E-value=46  Score=14.18  Aligned_cols=16  Identities=25%  Similarity=0.549  Sum_probs=13.7

Q ss_pred             EEEECCCEEEEEEEEC
Q ss_conf             1311121089999981
Q gi|254780293|r   48 ATGKRKTSIARVWIKS   63 (170)
Q Consensus        48 ~tGrRKtsvArV~l~~   63 (170)
                      .-|||+||.|.|.+.|
T Consensus        89 ~~~rr~Ts~a~V~VlP  104 (162)
T 1gqe_A           89 SGGRRHTSFSSAFVYP  104 (162)
T ss_dssp             SSCCEEEEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEEEC
T ss_conf             8884787666788856


No 74 
>>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A (A:120-413)
Probab=23.21  E-value=49  Score=13.99  Aligned_cols=45  Identities=22%  Similarity=0.406  Sum_probs=27.7

Q ss_pred             EEEEEEECCCCCHH-------HHHHHHHHHHHHHHH--------CHHHHHHHHHCCCCCCC
Q ss_conf             07999825983018-------889999999999765--------76344879977983357
Q gi|254780293|r  102 DVFATVSGGGLSGQ-------ASAICHGVAKALTYF--------QPDLRPQIKKGGFLTRD  147 (170)
Q Consensus       102 Di~~~V~GGG~sgQ-------a~AirlaIarAL~~~--------~p~~r~~Lk~~glLt~D  147 (170)
                      |+.... |||+.|.       +-|+|.|+--++...        .|+|+..|.+-|..+-|
T Consensus       234 Dvil~~-GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~eL~~Al~~wg~~~~~  293 (294)
T 2oem_A          234 DTIVNA-GGGIHGHPDGAIGGGRAFRAAIDAVLAGRPLRAAAAENEALQKAIDRWGVVEVE  293 (294)
T ss_dssp             SSEEEE-SHHHHTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHHHHHHHCCC---
T ss_pred             EEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCEEE
T ss_conf             699974-752146998748889999999999981999899863299999999985878750


No 75 
>>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397)
Probab=22.76  E-value=50  Score=13.94  Aligned_cols=22  Identities=41%  Similarity=0.557  Sum_probs=15.0

Q ss_pred             CCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf             641079998259830188899999
Q gi|254780293|r   99 NMYDVFATVSGGGLSGQASAICHG  122 (170)
Q Consensus        99 ~~~Di~~~V~GGG~sgQa~Airla  122 (170)
                      ..|||.+  -|||++|-+-|+.++
T Consensus         3 ~~~~~~v--ig~g~~g~~~a~~~~   24 (168)
T 2oln_A            3 ESYDVVV--VGGGPVGLATAWQVA   24 (168)
T ss_dssp             CEEEEEE--ECCSHHHHHHHHHHH
T ss_pred             CCCCEEE--ECCCHHHHHHHHHHH
T ss_conf             8787899--896899999999999


No 76 
>>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:255-334)
Probab=22.56  E-value=47  Score=14.09  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=26.2

Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             25983018889999999999765763448799779833575541
Q gi|254780293|r  108 SGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIV  151 (170)
Q Consensus       108 ~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R~~  151 (170)
                      .+||..|- ++|..+++-.--.....+.|.|-+.||+.|.||=+
T Consensus        18 f~ggPvGl-~tiA~~l~e~~~Tie~viEPyLiq~g~I~RTpRGR   60 (80)
T 1in4_A           18 YRGGPVGL-NALAASLGVEADTLSEVYEPYLLQAGFLARTPRGR   60 (80)
T ss_dssp             STTCCBCH-HHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEE
T ss_pred             CCCCCHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCHHHHCCHHH
T ss_conf             48986259-99999818971217888878998724464295278


No 77 
>>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433)
Probab=22.27  E-value=51  Score=13.88  Aligned_cols=25  Identities=32%  Similarity=0.361  Sum_probs=18.7

Q ss_pred             CCCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             566410799982598301888999999
Q gi|254780293|r   97 QDNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        97 ~~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      +..+++|.|  -|||.+|-.-|.+++-
T Consensus         3 ~~~~~~vvv--iG~G~~g~~~a~~l~~   27 (135)
T 1d5t_A            3 MDEEYDVIV--LGTGLTECILSGIMSV   27 (135)
T ss_dssp             CCSBCSEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             998768899--8959899999999998


No 78 
>>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} (A:1-85,A:181-251,A:332-399)
Probab=21.95  E-value=52  Score=13.84  Aligned_cols=29  Identities=28%  Similarity=0.478  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHCHHHHHHHHHCCCCCCC
Q ss_conf             99999999976576344879977983357
Q gi|254780293|r  119 ICHGVAKALTYFQPDLRPQIKKGGFLTRD  147 (170)
Q Consensus       119 irlaIarAL~~~~p~~r~~Lk~~glLt~D  147 (170)
                      .-.+|+.||..++.+++|.|++.--|-.|
T Consensus       194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  222 (224)
T 1v0j_A          194 MHMAIASALNMYDNVLAPHLRDGVPLLQD  222 (224)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             99999999999999975504468885889


No 79 
>>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} (A:1-38,A:256-374)
Probab=21.64  E-value=53  Score=13.80  Aligned_cols=47  Identities=26%  Similarity=0.385  Sum_probs=37.3

Q ss_pred             CHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             088844698999999999987385664107999825983018889999999999
Q gi|254780293|r   74 DISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAKAL  127 (170)
Q Consensus        74 ~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL  127 (170)
                      ++++++..+..|.+|++-|.--+...-||.      .|+||- +++.-|..||-
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~L-e~lk~AFeRa~   50 (157)
T 2aeu_A            4 DYEEFLRLEKARKIILEILNEKGRDALYDL------SGLSGL-ERIRKAFERAK   50 (157)
T ss_dssp             -----CCCCHHHHHHHHHHHHTCGGGCEEC------SSCCCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC------CCCCCH-HHHHHHHHHHH
T ss_conf             589998789889999999866263135300------278888-99999999999


No 80 
>>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} (A:1-98,A:222-313,A:422-478)
Probab=21.37  E-value=54  Score=13.76  Aligned_cols=18  Identities=17%  Similarity=0.287  Sum_probs=9.7

Q ss_pred             EEEECCCCCHH--HHHHHHH
Q ss_conf             99825983018--8899999
Q gi|254780293|r  105 ATVSGGGLSGQ--ASAICHG  122 (170)
Q Consensus       105 ~~V~GGG~sgQ--a~Airla  122 (170)
                      +.+.|-+..|-  .++|+.|
T Consensus       212 ~~~~G~~~~Gv~~~d~i~~~  231 (247)
T 2ivd_A          212 LHLIGNAYKGVGLNDCIRNA  231 (247)
T ss_dssp             EEECSTTTSCCSHHHHHHHH
T ss_pred             EEEECCCCCCCCHHHHHHHH
T ss_conf             99986898998889999999


No 81 
>>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris CGA009} (A:165-452)
Probab=20.88  E-value=55  Score=13.70  Aligned_cols=41  Identities=20%  Similarity=0.187  Sum_probs=24.0

Q ss_pred             CEEEEEEEECCCCCHH-------HHHHHHHHHHHHHH--------HCHHHHHHHHHC
Q ss_conf             4107999825983018-------88999999999976--------576344879977
Q gi|254780293|r  100 MYDVFATVSGGGLSGQ-------ASAICHGVAKALTY--------FQPDLRPQIKKG  141 (170)
Q Consensus       100 ~~Di~~~V~GGG~sgQ-------a~AirlaIarAL~~--------~~p~~r~~Lk~~  141 (170)
                      +-|+.... |||+.|.       +-|+|.||--++.-        -.|+++..|.+-
T Consensus       230 ~~Dvil~~-GGgi~gHPdG~~aGa~A~RqA~ea~~~g~~l~e~A~~~~eL~~Al~~w  285 (288)
T 2qyg_A          230 SADFGFVP-GRGVFGHPMGPAAGATSIRQAWDAIAAGIPVPDHAASHPELAAALRAF  285 (288)
T ss_dssp             SSCCEECC-STTTTTCTTCHHHHHHHHHHHHHHHHTTCCHHHHHTTCHHHHHHHHHC
T ss_pred             CCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHH
T ss_conf             97789976-852355984578899999999999974997799851399999999984


No 82 
>>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* (A:1-108,A:209-265,A:339-397)
Probab=20.85  E-value=55  Score=13.70  Aligned_cols=24  Identities=21%  Similarity=0.326  Sum_probs=14.4

Q ss_pred             CCCEEEEEEEECCCCCHHHHHHHHHH
Q ss_conf             66410799982598301888999999
Q gi|254780293|r   98 DNMYDVFATVSGGGLSGQASAICHGV  123 (170)
Q Consensus        98 ~~~~Di~~~V~GGG~sgQa~AirlaI  123 (170)
                      ...+||.|  -|+|++|-+-|..++-
T Consensus        27 ~~~~DVlI--VGAG~aGlsaA~~La~   50 (224)
T 3hdq_A           27 SKGFDYLI--VGAGFAGSVLAERLAS   50 (224)
T ss_dssp             CCCEEEEE--ECCSHHHHHHHHHHHH
T ss_pred             CCCCCEEE--ECCCHHHHHHHHHHHH
T ss_conf             78899999--9972899999999996


No 83 
>>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:84-214,B:295-336)
Probab=20.72  E-value=37  Score=14.73  Aligned_cols=17  Identities=24%  Similarity=0.274  Sum_probs=12.1

Q ss_pred             EEEECCCEEEEEEEECC
Q ss_conf             13111210899999818
Q gi|254780293|r   48 ATGKRKTSIARVWIKSG   64 (170)
Q Consensus        48 ~tGrRKtsvArV~l~~G   64 (170)
                      +-||+.||.|.|++.|-
T Consensus       109 ~~gR~hTStasV~VlP~  125 (173)
T 2b3t_B          109 SQGRIHTSACTVAVMPE  125 (173)
T ss_dssp             SSCCCEEEEEEEECCBC
T ss_pred             CCCCCCEEEEEEEECCC
T ss_conf             34530202456621001


No 84 
>>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} (A:1-222,A:312-440)
Probab=20.46  E-value=56  Score=13.65  Aligned_cols=44  Identities=23%  Similarity=0.096  Sum_probs=24.2

Q ss_pred             CCCHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             46989999999999873856---64107999825983018889999999
Q gi|254780293|r   79 FTQDLLVLNIKRPFNTVSQD---NMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        79 f~~~~~r~~i~~Pl~~~~~~---~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      +++...+.-...+....+..   -.|||.|  -|||++|-+=|+.|+-.
T Consensus        25 ~~~~~~~~p~~~~~~~~~~~~~~~~~DViI--VGaGpaGL~lA~~L~~~   71 (351)
T 3fmw_A           25 LYDDDDKDPGRRMMHNSNADDAALTTDVVV--VGGGPVGLMLAGELRAG   71 (351)
T ss_dssp             --------------------------CEEE--ECCSHHHHHHHHHHHHT
T ss_pred             HCCCCCCHHHHHHCCCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC
T ss_conf             016531026776403678888889878899--99199999999999978


No 85 
>>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:429-498)
Probab=20.32  E-value=52  Score=13.83  Aligned_cols=46  Identities=20%  Similarity=0.039  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHCCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH
Q ss_conf             9999999999873856-------6410799982598301888999999999976
Q gi|254780293|r   83 LLVLNIKRPFNTVSQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY  129 (170)
Q Consensus        83 ~~r~~i~~Pl~~~~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~  129 (170)
                      ...+.+.+-+..++..       ..++..+.-.|..+| --+.=|++|||||+.
T Consensus        17 ~~~e~i~~a~~~~~l~~~~~~~~~~~~~~~~~~g~~LS-gGQ~QrialARAl~~   69 (70)
T 3b60_A           17 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS-GGQRQRIAIARALLR   69 (70)
T ss_dssp             CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC-HHHHHHHHHHHHHHH
T ss_conf             23999999999939856686076876776468999889-999999999999960


Done!