Query gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 170 No_of_seqs 129 out of 946 Neff 5.2 Searched_HMMs 33803 Date Tue May 24 16:27:05 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780293.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bbn_I Ribosomal protein S9; 100.0 0 0 361.3 9.3 145 26-170 52-197 (197) 2 >2vqe_I 30S ribosomal protein 100.0 0 0 339.1 10.8 127 44-170 2-128 (128) 3 >3i1m_I 30S ribosomal protein 100.0 0 0 337.0 1.3 128 43-170 3-130 (130) 4 >2zkq_i 40S ribosomal protein 100.0 0 0 328.0 7.2 133 38-170 2-146 (146) 5 >3jyv_I 40S ribosomal protein 100.0 0 0 314.0 9.5 125 46-170 2-138 (138) 6 >1sbp_A Sulfate-binding protei 75.7 1.1 3.1E-05 24.3 1.1 83 68-153 3-87 (141) 7 >3b5x_A Lipid A export ATP-bin 60.2 12 0.00036 17.7 4.8 86 43-129 45-174 (259) 8 >2r6f_A Excinuclease ABC subun 55.7 5.3 0.00016 20.0 1.4 25 60-84 29-53 (120) 9 >2dy1_A Elongation factor G; t 54.0 15 0.00045 17.1 4.6 80 53-134 24-118 (133) 10 >2r9z_A Glutathione amide redu 53.1 12 0.00037 17.7 2.9 25 98-124 2-26 (189) 11 >1mv5_A LMRA, multidrug resist 51.3 13 0.00037 17.6 2.8 80 49-129 37-156 (243) 12 >1fec_A Trypanothione reductas 51.2 13 0.00037 17.7 2.7 22 100-123 3-24 (200) 13 >3dgz_A Thioredoxin reductase 51.1 13 0.00038 17.6 2.8 24 97-122 3-26 (197) 14 >2a8x_A Dihydrolipoyl dehydrog 50.4 12 0.00036 17.7 2.6 23 99-123 2-24 (194) 15 >1trb_A Thioredoxin reductase; 49.0 13 0.00039 17.5 2.6 26 97-124 2-27 (168) 16 >1zk7_A HGII, reductase, mercu 47.2 17 0.0005 16.8 2.9 24 98-123 2-25 (197) 17 >2ff7_A Alpha-hemolysin transl 46.7 11 0.00034 17.9 1.9 81 49-130 44-163 (247) 18 >2f5v_A Pyranose 2-oxidase; fl 44.9 20 0.00058 16.5 2.9 27 96-124 14-40 (329) 19 >2cul_A Glucose-inhibited divi 44.6 17 0.0005 16.8 2.6 24 99-124 2-25 (169) 20 >2a87_A TRXR, TR, thioredoxin 44.3 17 0.00051 16.8 2.5 31 92-124 6-36 (190) 21 >3cty_A Thioredoxin reductase; 43.9 20 0.00058 16.4 2.8 31 92-124 8-38 (174) 22 >2i0z_A NAD(FAD)-utilizing deh 42.3 19 0.00057 16.5 2.6 34 88-123 14-47 (249) 23 >1v59_A Dihydrolipoamide dehyd 42.2 17 0.0005 16.8 2.3 22 99-122 4-25 (193) 24 >2v6o_A Thioredoxin glutathion 41.5 22 0.00065 16.2 2.7 15 108-122 7-21 (203) 25 >1hyu_A AHPF, alkyl hydroperox 41.4 24 0.00072 15.9 3.4 28 95-124 21-48 (189) 26 >1zmd_A Dihydrolipoyl dehydrog 41.3 21 0.00062 16.3 2.6 23 99-123 5-27 (197) 27 >3f8d_A Thioredoxin reductase 41.2 24 0.00071 15.9 2.9 14 108-121 21-34 (193) 28 >3dk9_A Grase, GR, glutathione 40.9 17 0.00052 16.8 2.2 30 92-123 12-41 (207) 29 >3d8x_A Thioredoxin reductase 40.5 22 0.00065 16.2 2.6 25 98-124 8-32 (169) 30 >1dxl_A Dihydrolipoamide dehyd 40.1 23 0.00069 16.0 2.7 24 98-123 4-27 (187) 31 >1ges_A Glutathione reductase; 39.9 24 0.0007 16.0 2.7 22 99-122 3-24 (190) 32 >1xdi_A RV3303C-LPDA; reductas 39.8 24 0.00071 15.9 2.7 21 101-123 3-23 (203) 33 >2qae_A Lipoamide, dihydrolipo 39.8 25 0.00075 15.8 2.8 13 109-121 9-21 (194) 34 >2wwb_N 60S ribosomal protein 39.6 21 0.00061 16.3 2.4 40 101-140 29-68 (120) 35 >2bcg_G Secretory pathway GDP 39.2 26 0.00077 15.7 2.9 30 91-122 2-31 (152) 36 >2bi7_A UDP-galactopyranose mu 38.5 26 0.00076 15.7 2.7 23 99-123 2-24 (119) 37 >1v71_A Serine racemase, hypot 38.0 21 0.00062 16.3 2.2 72 57-134 41-119 (240) 38 >1z0w_A Putative protease LA h 37.9 27 0.0008 15.6 2.8 69 59-130 37-111 (207) 39 >2hqm_A GR, grase, glutathione 37.9 27 0.00079 15.6 2.7 24 98-123 9-32 (207) 40 >1ebd_A E3BD, dihydrolipoamide 37.4 23 0.00068 16.0 2.3 21 100-122 3-23 (197) 41 >1fl2_A Alkyl hydroperoxide re 37.2 28 0.00083 15.5 2.7 13 109-121 8-20 (170) 42 >3l8k_A Dihydrolipoyl dehydrog 37.0 27 0.00079 15.6 2.6 22 99-122 3-24 (183) 43 >2eq6_A Pyruvate dehydrogenase 36.7 27 0.0008 15.6 2.6 23 98-122 4-26 (179) 44 >2zzc_A Thioredoxin reductase 35.5 30 0.00089 15.3 2.9 25 98-124 24-48 (217) 45 >1ykw_A Rubisco-like protein; 35.5 26 0.00078 15.7 2.4 44 99-143 229-287 (291) 46 >3cuq_B Vacuolar protein-sorti 35.3 19 0.00057 16.5 1.7 39 108-149 13-51 (66) 47 >2jbv_A Choline oxidase; alcoh 35.1 27 0.0008 15.6 2.4 23 98-122 11-33 (176) 48 >1pn0_A Phenol 2-monooxygenase 34.6 31 0.00091 15.2 2.6 14 108-121 14-27 (300) 49 >2gag_A Heterotetrameric sarco 34.6 31 0.00091 15.2 2.6 24 99-124 13-36 (214) 50 >1ju2_A HydroxynitrIle lyase; 32.8 31 0.00092 15.2 2.4 26 97-124 23-48 (183) 51 >1zbt_A RF-1, peptide chain re 32.4 31 0.00091 15.2 2.3 16 48-63 90-105 (150) 52 >1rre_A ATP-dependent protease 32.3 34 0.001 15.0 5.1 88 41-128 9-109 (200) 53 >1rhy_A IGPD, imidazole glycer 32.1 34 0.001 15.0 4.5 84 49-133 102-188 (202) 54 >2dkh_A 3-hydroxybenzoate hydr 31.9 33 0.00097 15.1 2.4 22 99-122 31-52 (258) 55 >2zbw_A Thioredoxin reductase; 31.5 35 0.001 14.9 2.7 12 109-120 12-23 (178) 56 >1lvl_A Dihydrolipoamide dehyd 31.1 35 0.001 14.9 2.5 24 99-124 4-27 (192) 57 >1vdc_A NTR, NADPH dependent t 30.1 37 0.0011 14.8 2.6 24 99-124 7-30 (179) 58 >3fim_B ARYL-alcohol oxidase; 29.6 37 0.0011 14.8 2.3 21 100-122 2-22 (146) 59 >1i8t_A UDP-galactopyranose mu 29.3 36 0.0011 14.8 2.2 17 107-123 6-22 (171) 60 >3ihg_A RDME; flavoenzyme, ant 29.1 38 0.0011 14.7 2.7 11 108-118 11-21 (217) 61 >1s3e_A Amine oxidase [flavin- 28.9 39 0.0011 14.6 2.5 15 108-122 10-24 (200) 62 >2hyd_A ABC transporter homolo 28.3 39 0.0012 14.6 2.3 44 85-129 20-70 (71) 63 >1n4w_A CHOD, cholesterol oxid 27.2 41 0.0012 14.4 2.7 24 99-124 4-27 (207) 64 >2ihr_1 Peptide chain release 27.1 35 0.001 14.9 1.9 17 48-64 87-103 (172) 65 >1sez_A Protoporphyrinogen oxi 26.4 43 0.0013 14.4 2.5 17 106-122 17-33 (228) 66 >3ic9_A Dihydrolipoamide dehyd 26.2 43 0.0013 14.3 3.0 21 100-122 8-28 (195) 67 >2q7v_A Thioredoxin reductase; 25.6 44 0.0013 14.3 2.7 25 98-124 6-30 (172) 68 >2bs2_A Quinol-fumarate reduct 25.0 45 0.0013 14.2 2.3 21 102-122 243-267 (309) 69 >2f1d_A IGPD 1, imidazoleglyce 24.9 46 0.0013 14.2 4.0 79 51-130 106-186 (207) 70 >2b9w_A Putative aminooxidase; 24.5 46 0.0014 14.2 2.6 22 100-123 6-27 (191) 71 >1rq0_A RF-1, peptide chain re 24.4 43 0.0013 14.4 1.9 16 48-63 86-101 (147) 72 >2yqu_A 2-oxoglutarate dehydro 23.4 49 0.0014 14.0 2.7 15 108-122 7-21 (186) 73 >1gqe_A Release factor 2, RF2; 23.3 46 0.0014 14.2 1.9 16 48-63 89-104 (162) 74 >2oem_A 2,3-diketo-5-methylthi 23.2 49 0.0015 14.0 2.6 45 102-147 234-293 (294) 75 >2oln_A NIKD protein; flavopro 22.8 50 0.0015 13.9 2.7 22 99-122 3-24 (168) 76 >1in4_A RUVB, holliday junctio 22.6 47 0.0014 14.1 1.8 43 108-151 18-60 (80) 77 >1d5t_A Guanine nucleotide dis 22.3 51 0.0015 13.9 2.9 25 97-123 3-27 (135) 78 >1v0j_A UDP-galactopyranose mu 21.9 52 0.0015 13.8 2.9 29 119-147 194-222 (224) 79 >2aeu_A Hypothetical protein M 21.6 53 0.0016 13.8 4.6 47 74-127 4-50 (157) 80 >2ivd_A PPO, PPOX, protoporphy 21.4 54 0.0016 13.8 2.3 18 105-122 212-231 (247) 81 >2qyg_A Ribulose bisphosphate 20.9 55 0.0016 13.7 3.0 41 100-141 230-285 (288) 82 >3hdq_A UDP-galactopyranose mu 20.9 55 0.0016 13.7 3.1 24 98-123 27-50 (224) 83 >2b3t_B RF-1, peptide chain re 20.7 37 0.0011 14.7 1.0 17 48-64 109-125 (173) 84 >3fmw_A Oxygenase; mithramycin 20.5 56 0.0017 13.6 2.0 44 79-124 25-71 (351) 85 >3b60_A Lipid A export ATP-bin 20.3 52 0.0015 13.8 1.6 46 83-129 17-69 (70) No 1 >>3bbn_I Ribosomal protein S9; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (I:) Probab=100.00 E-value=0 Score=361.32 Aligned_cols=145 Identities=45% Similarity=0.624 Sum_probs=136.3 Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCC-CHHHHHHHHHHHHHHCCCCCEEEE Q ss_conf 3323223222346545435500131112108999998189739994100888446-989999999999873856641079 Q gi|254780293|r 26 PEETSSSPAIHSRKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFT-QDLLVLNIKRPFNTVSQDNMYDVF 104 (170) Q Consensus 26 ~~~~~~~~~~~~~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~-~~~~r~~i~~Pl~~~~~~~~~Di~ 104 (170) .............+.|..+++|++||||+|+|+|||++|+|+|+|||+|+++||+ +..+++.++.||.+++..++|||+ T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~GrRKta~A~V~l~~GtG~i~INg~~~~~yf~~~~~~~~~~~~pl~~~~~~~~~dv~ 131 (197) T 3bbn_I 52 TADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAKEYLQGNPLWLQYVKTPLATLGYETNYDVF 131 (197) T ss_dssp -------------------CBCCCCEETTEEEEEEEEESSCCEEETTEEHHHHSCSCCGGGTTTSHHHHTTTCTTTEEEE T ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEECCCCHHHHCCCCHHHHHHHHHHHHHHCCCCCCEEE T ss_conf 33266664320677534116885468805799999983742899999048997791699999998888874115762069 Q ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 998259830188899999999997657634487997798335755416759528984335430579 Q gi|254780293|r 105 ATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170) Q Consensus 105 ~~V~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170) |+|+|||+||||+||||||||||+.++|++++.|+++||||+|+|++||||||++||||+|||||| T Consensus 132 ~~v~GGG~sgQa~Air~aiaraL~~~~~~~~~~l~~~glLt~D~R~~ErKK~G~~kARk~~q~skR 197 (197) T 3bbn_I 132 VKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPGLKKARKAPQFSKR 197 (197) T ss_dssp EEEESSCHHHHHHHHHHHHHHHTTTSCGGGSHHHHTTTCSSCCCCCCCCCCTTSSSTTCCCCCCCC T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999518965410217999999999979776798988749126741124577897566426244679 No 2 >>2vqe_I 30S ribosomal protein S9, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} (I:) Probab=100.00 E-value=0 Score=339.06 Aligned_cols=127 Identities=47% Similarity=0.785 Sum_probs=124.9 Q ss_pred CCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 55001311121089999981897399941008884469899999999998738566410799982598301888999999 Q gi|254780293|r 44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 44 g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ...|++||||||+|+|||++|+|+|+|||+|+++||++..+++.+++||.+++..++|||+|+|+|||+||||+|||||| T Consensus 2 ~~~~~~GkRKta~A~v~l~~G~G~I~INg~~l~~yf~~~~~r~~v~~Pl~~~~~~~~~DI~~~V~GGG~sgQa~Air~ai 81 (128) T 2vqe_I 2 EQYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGI 81 (128) T ss_dssp CCEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHH T ss_pred CEEEEECCCCCEEEEEEEECCCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHH T ss_conf 46787250505899999983884499804267664417789999876654212257426899995598510588899999 Q ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 99997657634487997798335755416759528984335430579 Q gi|254780293|r 124 AKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170) Q Consensus 124 arAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170) ||||+.++|++++.|++.||||+|||++||||||++||||+|||||| T Consensus 82 araL~~~~~~~~~~lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 128 (128) T 2vqe_I 82 ARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR 128 (128) T ss_dssp HHHHHHHCGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC T ss_pred HHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999979786899987688036541023577787665515244579 No 3 >>3i1m_I 30S ribosomal protein S9; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_I* 3e1a_W 3e1c_W 1vs5_I 3i1o_I 3i1q_I 3i1s_I 3i1z_I 3i21_I 2qal_I* 1p6g_I 1p87_I 2aw7_I 2avy_I 2i2u_I 2i2p_I* 2qan_I* 2qb9_I* 2qbb_I* 2qbd_I ... (I:) Probab=100.00 E-value=0 Score=337.05 Aligned_cols=128 Identities=47% Similarity=0.768 Sum_probs=125.9 Q ss_pred CCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 35500131112108999998189739994100888446989999999999873856641079998259830188899999 Q gi|254780293|r 43 WQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 43 ~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla 122 (170) .+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.+++||.+++..++|||+|+|+|||+||||+||||| T Consensus 3 ~~~~~~~GkRKta~A~v~l~~G~G~i~INg~~l~~yf~~~~~r~~i~~Pl~~~~~~~~~di~~~v~GGG~~gQa~Air~a 82 (130) T 3i1m_I 3 ENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHG 82 (130) T ss_dssp -CCBCCCCCCSSCEEEEEEESSCSCBCGGGSCSTTTTTTSTTTTTTTTTSSSSCCSSSCEEEEEEESSCHHHHHHHHHHH T ss_pred CCEEEEECCCCCEEEEEEEEECCCEEEECHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH T ss_conf 63888744242589999999267669767077765354676899998788873666514699998469821488899999 Q ss_pred HHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 999997657634487997798335755416759528984335430579 Q gi|254780293|r 123 VAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170) Q Consensus 123 IarAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170) |||||+.++|++++.|+++||||+|+|++||||||++||||+|||||| T Consensus 83 iaraL~~~~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR 130 (130) T 3i1m_I 83 ITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQFSKR 130 (130) T ss_dssp HHHHTTSSCSSSTTTTTTTTTTSCCCCCCCCCCTTSSBTTBCCCCCCC T ss_pred HHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999998609463588887859537756455588897565616244679 No 4 >>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (i:) Probab=100.00 E-value=0 Score=328.04 Aligned_cols=133 Identities=26% Similarity=0.288 Sum_probs=123.7 Q ss_pred CCCCCCCCCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHH-HHHHHHCCCCCEEEEEEEECCCCCHHH Q ss_conf 6545435500131112108999998189739994100888446989999999-999873856641079998259830188 Q gi|254780293|r 38 RKVDQWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIK-RPFNTVSQDNMYDVFATVSGGGLSGQA 116 (170) Q Consensus 38 ~~~d~~g~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~-~Pl~~~~~~~~~Di~~~V~GGG~sgQa 116 (170) +++|..+.+|++||||||+|+|||++|+|+|+|||+|+++||++..+++.++ .||.+++..++|||+|+|+|||+|||| T Consensus 2 ~~~~~~~~~~~~GrRKta~A~v~l~~G~G~I~INg~~l~~yf~~~~~~~~~~~~pl~~~~~~~~~Dv~v~v~GGG~~gQa 81 (146) T 2zkq_i 2 PSKGPLQSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQI 81 (146) T ss_dssp ------CCEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTTSCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHH T ss_pred CCCCCCCEEEEECCCCEEEEEEEEEECCCCEEECCCCHHHCCCHHHHHHHHCCHHHCCCCCCCCCCEEEEEECCCCEEHH T ss_conf 98888618889662602899999991676489869778890689899998433431153223563258997338813003 Q ss_pred HHHHHHHHHHHHHHCHHH-----HHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 899999999997657634-----487997------798335755416759528984335430579 Q gi|254780293|r 117 SAICHGVAKALTYFQPDL-----RPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170) Q Consensus 117 ~AirlaIarAL~~~~p~~-----r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170) +||||||||||+.|+|++ ++.||+ .||||+|||++||||||++|||++|||||| T Consensus 82 ~Air~aiaraL~~~~~~~~~~~~r~~lk~~~~~~~~glL~rD~R~~ErKK~G~~kARk~~q~skR 146 (146) T 2zkq_i 82 YAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146) T ss_dssp HHHHHHHHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCC T ss_conf 26499999999986143037445088898776443876346730004586898756647376779 No 5 >>3jyv_I 40S ribosomal protein S16(A); eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus} PDB: 1s1h_I (I:) Probab=100.00 E-value=0 Score=314.04 Aligned_cols=125 Identities=29% Similarity=0.334 Sum_probs=117.1 Q ss_pred CEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCC-HHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 001311121089999981897399941008884469-8999999999987385664107999825983018889999999 Q gi|254780293|r 46 SYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQ-DLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 46 ~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~-~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) .|++||||||+|+|||++|+|+|+|||+|+++||++ ...++.+..||..++..++|||+|+|+|||+||||+||||||| T Consensus 2 v~~~GrRKta~A~v~l~~G~G~I~INg~~~~~yf~~~~~~~~~~~~pl~~~~~~~~~Di~i~V~GGG~~gQa~Air~aia 81 (138) T 3jyv_I 2 VQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIA 81 (138) T ss_dssp BCCCCCSSSCEEEEEEEESCCCEEETTEEHHHHCCSSSTTGGGHHHHHTSSCSSSSEEEEEEEESCCTTTHHHHHHHHHH T ss_pred CEEECCCEEEEEEEEEECCCCEEEECCCCHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHH T ss_conf 34166472089999998486549999933444088999999861587753233365016999967864279869999999 Q ss_pred HHHHHHC-----HHHHHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 9997657-----634487997------798335755416759528984335430579 Q gi|254780293|r 125 KALTYFQ-----PDLRPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170) Q Consensus 125 rAL~~~~-----p~~r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170) |||+.|+ |..++.||+ .||||+|+|++||||||++||||+|||||| T Consensus 82 raL~~~~~~~~~~~~r~~Lk~~~~~~d~glLtrD~R~~ErKK~G~~kARk~~q~skR 138 (138) T 3jyv_I 82 KGLVAYHQKYVDEQSKNELKKAFTSYDRTLLIADSRRPEPKKFGGKGARSRFQKSYR 138 (138) T ss_dssp HTTTTCCCSSCSTTHHHHHHSSSCSSCCCSSSCCCCCCCCCCSSSSCSSSCSCCSCC T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCC T ss_conf 999986101268455799998875346675614624443688898665636366789 No 6 >>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} (A:1-85,A:220-275) Probab=75.69 E-value=1.1 Score=24.29 Aligned_cols=83 Identities=18% Similarity=0.203 Sum_probs=54.5 Q ss_pred EEEECCCHHHHCCCHHHHHHHHHHHHH-HCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHCCCCC Q ss_conf 999410088844698999999999987-3856641079998259830188899999999997657-63448799779833 Q gi|254780293|r 68 FTINYVDISKYFTQDLLVLNIKRPFNT-VSQDNMYDVFATVSGGGLSGQASAICHGVAKALTYFQ-PDLRPQIKKGGFLT 145 (170) Q Consensus 68 I~INgk~~~~Yf~~~~~r~~i~~Pl~~-~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~~-p~~r~~Lk~~glLt 145 (170) +++++.+++. +++ +-..+...|.- ......-+|.+.-+=||.+.||.||--|+-=-++.+. +..-..|-+.||+. T Consensus 3 ~~llnvSYdv--tRe-~y~~~n~~F~~~wk~~tG~~v~i~qShggSg~QaraV~~Gl~ADVVtlal~~Did~l~~~GlI~ 79 (141) T 1sbp_A 3 IQLLNVSYDP--TRE-LYEQYNKAFSAHWKQETGDNVVIDQSHGGSGKQATSVINGIEADTVTLALAYDVNAIAERGRID 79 (141) T ss_dssp EEEEEEECST--THH-HHHHHHHHHHHHHHHHHSCEEEEEEEESCHHHHHHHHHTTCCCSEEEESSHHHHHHHHHTTSSC T ss_pred CEEEEEEECC--HHH-HHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHCCCCC T ss_conf 0899975004--199-9999999999998760299779996378579999999749998999968788899999779865 Q ss_pred CCCCCCCC Q ss_conf 57554167 Q gi|254780293|r 146 RDSRIVER 153 (170) Q Consensus 146 ~D~R~~Er 153 (170) .|.+..|+ T Consensus 80 ~dW~~~E~ 87 (141) T 1sbp_A 80 KNWIKREP 87 (141) T ss_dssp TTGGGGCC T ss_pred CCCHHHCC T ss_conf 55312178 No 7 >>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} (A:324-582) Probab=60.23 E-value=12 Score=17.75 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=48.4 Q ss_pred CCCCEE----EEECCCEEEEEE---EECCCCEEEEECCCHHHHCCC------------------------------HHHH Q ss_conf 355001----311121089999---981897399941008884469------------------------------8999 Q gi|254780293|r 43 WQRSYA----TGKRKTSIARVW---IKSGSGKFTINYVDISKYFTQ------------------------------DLLV 85 (170) Q Consensus 43 ~g~~~~----tGrRKtsvArV~---l~~GsG~I~INgk~~~~Yf~~------------------------------~~~r 85 (170) .|..++ +|-=||+...+. +.+-+|.|.|||.++.+|=.. .... T Consensus 45 ~Ge~~aivG~sGsGKSTLl~~l~gl~~~~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~ 124 (259) T 3b5x_A 45 QGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTR 124 (259) T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEHHHCCHHHHHHHEEEEEECCEECCCCCCCCCCCCCCCCCCH T ss_conf 89899999999986999999986346467897528988766489999985269981301113674321102354555657 Q ss_pred HHHHHHHHHHCCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999873856-------6410799982598301888999999999976 Q gi|254780293|r 86 LNIKRPFNTVSQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170) Q Consensus 86 ~~i~~Pl~~~~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170) ..+.+-+..++.. ..+|-.+.-.|.-+|| -+-=|.+|||||+. T Consensus 125 ~~i~~~~~~~~~~~~i~~lp~gl~t~i~~~g~~LSg-Gq~QRi~lARaL~~ 174 (259) T 3b5x_A 125 EQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG-GQRQRVAIARALLR 174 (259) T ss_pred HHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCCH-HHHHHHHHHHHHHH T ss_conf 999999999585789972767678775588984799-99999999999972 No 8 >>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} (A:116-143,A:431-522) Probab=55.71 E-value=5.3 Score=19.96 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=20.6 Q ss_pred EEECCCCEEEEECCCHHHHCCCHHH Q ss_conf 9981897399941008884469899 Q gi|254780293|r 60 WIKSGSGKFTINYVDISKYFTQDLL 84 (170) Q Consensus 60 ~l~~GsG~I~INgk~~~~Yf~~~~~ 84 (170) .++|-+|.|.|||+++.+++..... T Consensus 29 ~l~PtsG~I~idGkdI~~i~~~~l~ 53 (120) T 2r6f_A 29 RLKKESLAVLVGGKHIGEVTAXSVT 53 (120) T ss_dssp CBCTTTTTEESSSCBHHHHHTSBHH T ss_pred CCHHHHHHHHHCCCEECHHCCCCHH T ss_conf 1469997425079604120037999 No 9 >>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} (A:454-571,A:651-665) Probab=54.03 E-value=15 Score=17.11 Aligned_cols=80 Identities=14% Similarity=0.096 Sum_probs=47.7 Q ss_pred CCEEEEEEE--ECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCC------CEEEEEEEECCCCCH---HHH---- Q ss_conf 210899999--81897399941008884469899999999998738566------410799982598301---888---- Q gi|254780293|r 53 KTSIARVWI--KSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDN------MYDVFATVSGGGLSG---QAS---- 117 (170) Q Consensus 53 KtsvArV~l--~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~------~~Di~~~V~GGG~sg---Qa~---- 117 (170) +...|+||+ .|+++.+.+|......+ +. .+...|.+=|...-..| -.||.+++.+|.... -.. T Consensus 24 ~~~~a~V~l~iep~~~~~~~~~~~~~~~-p~-e~~~ai~~G~~~a~~~GpL~g~pv~dvkv~L~d~~~h~~~s~~~~f~~ 101 (133) T 2dy1_A 24 HGQYGDVWLRLEPASEYGFEWRITGGVI-PS-KYQEAIEEGIKEAAKKGVLAGFPVMGFKAIVYNGSYHEVDSSDLAFQI 101 (133) T ss_dssp EEEEEEEEEEEEECSSCEEEECCCTTSS-CG-GGHHHHHHHHHHHHTSCTTTSCCBCSEEEEEEEEECCTTTBCHHHHHH T ss_pred CCEEEEEEEEECCCCCCCCCCCCCCCEE-HH-HHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEECCCCCCHHHHH T ss_conf 8715368889777745675400358751-34-435777677899985674125552445999985775068887068999 Q ss_pred HHHHHHHHHHHHHCHHH Q ss_conf 99999999997657634 Q gi|254780293|r 118 AICHGVAKALTYFQPDL 134 (170) Q Consensus 118 AirlaIarAL~~~~p~~ 134 (170) |.+.++-.|+....|-| T Consensus 102 Aa~~a~~~a~~~A~p~L 118 (133) T 2dy1_A 102 AASLAFKKVMAEAHPVL 118 (133) T ss_dssp HHHHHHHHHHHHSCEEE T ss_pred HHHHHHHHHHHHCCCEE T ss_conf 99999999998589889 No 10 >>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* (A:1-138,A:281-331) Probab=53.07 E-value=12 Score=17.70 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=18.6 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 664107999825983018889999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ..+|||.| -|||..|-+-|++++-. T Consensus 2 t~~yDViI--IGaGpAGl~AA~~la~~ 26 (189) T 2r9z_A 2 TQHFDLIA--IGGGSGGLAVAEKAAAF 26 (189) T ss_dssp CCCEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 96077999--97889999999999968 No 11 >>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} (A:) Probab=51.25 E-value=13 Score=17.64 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=48.2 Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHHC------------------------------CCHHHHHHHHHHHHHH Q ss_conf 3111210899999---818973999410088844------------------------------6989999999999873 Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYF------------------------------TQDLLVLNIKRPFNTV 95 (170) Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf------------------------------~~~~~r~~i~~Pl~~~ 95 (170) +|-=||+..+... .|-+|.|.|||.++..|- ........+.+-+... T Consensus 37 sGsGKSTLl~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~g~~~~~~~~~~~~~~~~~ 116 (243) T 1mv5_A 37 SGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLA 116 (243) T ss_dssp TTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHCEEEEECCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHHH T ss_conf 99819999999966877896389999999740169999734599926884365658762023444556889999999997 Q ss_pred CC-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 85-------66410799982598301888999999999976 Q gi|254780293|r 96 SQ-------DNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170) Q Consensus 96 ~~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170) .. ...+|..+.-.|-.+|| -+.=|++|||||+. T Consensus 117 ~~~~~i~~l~~~l~t~i~~~g~~LSg-Gq~Qri~lARal~~ 156 (243) T 1mv5_A 117 FARSFVENMPDQLNTEVGERGVKISG-GQRQRLAIARAFLR 156 (243) T ss_dssp TCTTTTTSSTTGGGCEESTTSBCCCH-HHHHHHHHHHHHHH T ss_pred CHHHHHHHCHHHHCCCCCCCCCCCCH-HHHHHHHHHHHHHC T ss_conf 62756764611104722588898699-99999999999852 No 12 >>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} (A:1-159,A:315-355) Probab=51.20 E-value=13 Score=17.66 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.2 Q ss_pred CEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 410799982598301888999999 Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQa~AirlaI 123 (170) +|||.| -|||+.|-+-|+.++= T Consensus 3 ~yDViI--IGaGpAGl~aA~~lar 24 (200) T 1fec_A 3 AYDLVV--IGAGSGGLEAGWNAAS 24 (200) T ss_dssp SEEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCEEE--ECCCHHHHHHHHHHHH T ss_conf 179899--9978899999999997 No 13 >>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, alternative splicing, FAD, mitochondrion, NADP, redox-active center, selenium; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* (A:1-155,A:315-356) Probab=51.14 E-value=13 Score=17.56 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=16.9 Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 56641079998259830188899999 Q gi|254780293|r 97 QDNMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 97 ~~~~~Di~~~V~GGG~sgQa~Airla 122 (170) ...+|||.| -|||.+|-+-|+.++ T Consensus 3 ~~~~yDViI--IGaGpAGL~AA~~la 26 (197) T 3dgz_A 3 GQQSFDLLV--IGGGSGGLACAKEAA 26 (197) T ss_dssp -CCEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHH T ss_conf 887246899--997889999999999 No 14 >>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} (A:1-142,A:288-339) Probab=50.44 E-value=12 Score=17.72 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=16.0 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 6410799982598301888999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ++|||.| -|||..|.+-|++++- T Consensus 2 t~yDVIV--IGaGpAGl~aA~~la~ 24 (194) T 2a8x_A 2 THYDVVV--LGAGPGGYVAAIRAAQ 24 (194) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 9348899--8988899999999996 No 15 >>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} (A:1-112,A:265-320) Probab=49.01 E-value=13 Score=17.52 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=18.3 Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 5664107999825983018889999999 Q gi|254780293|r 97 QDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 97 ~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ...+|||.| -|||..|-+-|+.++-. T Consensus 2 ~~~~yDViI--IGaGpAGl~aA~~lar~ 27 (168) T 1trb_A 2 TTKHSKLLI--LGSGPAGYTAAVYAARA 27 (168) T ss_dssp CEEEEEEEE--ECCSHHHHHHHHHHHTT T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 976355999--99879999999999978 No 16 >>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* (A:1-146,A:288-338) Probab=47.20 E-value=17 Score=16.84 Aligned_cols=24 Identities=21% Similarity=0.117 Sum_probs=18.2 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 66410799982598301888999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ..+|||.| -|||..|-+-|++++- T Consensus 2 s~~yDViI--IGaGpaGl~aA~~la~ 25 (197) T 1zk7_A 2 EPPVQVAV--IGSGGAAMAAALKAVE 25 (197) T ss_dssp CCCCEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 98862999--8888899999999985 No 17 >>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} (A:) Probab=46.69 E-value=11 Score=17.93 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=50.0 Q ss_pred EEECCCEEEEEEE---ECCCCEEEEECCCHHHHCCCH-----------------------------HHHHHHHHHHHHHC Q ss_conf 3111210899999---818973999410088844698-----------------------------99999999998738 Q gi|254780293|r 49 TGKRKTSIARVWI---KSGSGKFTINYVDISKYFTQD-----------------------------LLVLNIKRPFNTVS 96 (170) Q Consensus 49 tGrRKtsvArV~l---~~GsG~I~INgk~~~~Yf~~~-----------------------------~~r~~i~~Pl~~~~ 96 (170) +|-=||+..+..+ .|-.|.|.+||.++..+=+.. ...+.+...+..++ T Consensus 44 sGsGKSTL~~ll~gl~~p~~G~I~~~g~di~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~~~~~~~~e~~~~~~~~~~ 123 (247) T 2ff7_A 44 SGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 123 (247) T ss_dssp TTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHT T ss_pred CCCHHHHHHHHHHCCCCCCCCEEEECCEECHHHCHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 99869999999963247888999999999502133666181899947775678530013134654344899999999973 Q ss_pred C-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHH Q ss_conf 5-------664107999825983018889999999999765 Q gi|254780293|r 97 Q-------DNMYDVFATVSGGGLSGQASAICHGVAKALTYF 130 (170) Q Consensus 97 ~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~~ 130 (170) . ...+|-.+.-.|..+|| -+.=|++|||||+.- T Consensus 124 ~~~~i~~l~~g~~t~i~~~g~~LSg-GQ~QRialARAl~~~ 163 (247) T 2ff7_A 124 AHDFISELREGYNTIVGEQGAGLSG-GQRQRIAIARALVNN 163 (247) T ss_dssp CHHHHHTSTTGGGCBCSTTTTCCCH-HHHHHHHHHHHHTTC T ss_pred HHHHHHHHCCCHHCCCCCCCCCCCH-HHCEEEECHHHHHCC T ss_conf 0345554102201110586786585-562022005455127 No 18 >>2f5v_A Pyranose 2-oxidase; flavoprotein, rossmann-fold, PHBH-fold, GMC oxidoreductase, glutathion-reductase related fold, tetramer; HET: KBG FAD PG4; 1.41A {Peniophora SP} (A:1-178,A:237-316,A:525-595) Probab=44.86 E-value=20 Score=16.47 Aligned_cols=27 Identities=33% Similarity=0.217 Sum_probs=20.5 Q ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 85664107999825983018889999999 Q gi|254780293|r 96 SQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 96 ~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ....+|||.| -|||.+|-+-|.+|+=+ T Consensus 14 ~~~~~yDvIV--VGaG~aGl~aA~~La~a 40 (329) T 2f5v_A 14 GMDIKYDVVI--VGSGPIGCTYARELVGA 40 (329) T ss_dssp -CCSEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 9998004899--89678999999999849 No 19 >>2cul_A Glucose-inhibited division protein A-related protein, probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus HB8} (A:1-122,A:186-232) Probab=44.58 E-value=17 Score=16.85 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=16.7 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 64107999825983018889999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) .+|||.| -|+|.+|-+-|+.++-. T Consensus 2 ~~yDViI--IGAGpAGL~AA~~Lar~ 25 (169) T 2cul_A 2 AAYQVLI--VGAGFSGAETAFWLAQK 25 (169) T ss_dssp CCCSEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 9789899--99688999999999988 No 20 >>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreductase, structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} (A:1-122,A:268-335) Probab=44.27 E-value=17 Score=16.82 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=20.7 Q ss_pred HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 987385664107999825983018889999999 Q gi|254780293|r 92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) .........|||.| -|||..|-+-|+.++-. T Consensus 6 ~~~~~~~~~~DViV--IGaGpAGl~aA~~la~~ 36 (190) T 2a87_A 6 VHDRAHHPVRDVIV--IGSGPAGYTAALYAARA 36 (190) T ss_dssp ----CCCCCEEEEE--ECCHHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 98767798887999--89879999999999988 No 21 >>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} (A:1-122,A:268-319) Probab=43.92 E-value=20 Score=16.45 Aligned_cols=31 Identities=19% Similarity=0.403 Sum_probs=21.7 Q ss_pred HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 987385664107999825983018889999999 Q gi|254780293|r 92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) +........|||.| -|||..|-+-|+.++-. T Consensus 8 ~~~~~~~~~~DvvI--IGaGpaGl~aA~~la~~ 38 (174) T 3cty_A 8 VSSEEKERDFDVVI--VGAGAAGFSAAVYAARS 38 (174) T ss_dssp ------CCEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 67645577468999--89789999999999978 No 22 >>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} (A:1-193,A:392-447) Probab=42.28 E-value=19 Score=16.50 Aligned_cols=34 Identities=32% Similarity=0.331 Sum_probs=23.5 Q ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 999998738566410799982598301888999999 Q gi|254780293|r 88 IKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 88 i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ...|+.......+|||.| -|||++|-+-|+.++= T Consensus 14 ~~~~~~~~~~~~~~DViI--IGaG~aGL~aA~~La~ 47 (249) T 2i0z_A 14 GTENLYFQSNAMHYDVIV--IGGGPSGLMAAIGAAE 47 (249) T ss_dssp -----------CCCSEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 655045667777339699--8967999999999997 No 23 >>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} (A:1-152,A:314-354) Probab=42.16 E-value=17 Score=16.83 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=12.4 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 641079998259830188899999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~Airla 122 (170) ..|||.| -|+|.+|-+-|++++ T Consensus 4 ~~yDviV--IGaG~aGl~aA~~aa 25 (193) T 1v59_A 4 KSHDVVI--IGGGPAGYVAAIKAA 25 (193) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHH T ss_conf 7423899--998889999999999 No 24 >>2v6o_A Thioredoxin glutathione reductase; FAD, flavoprotein, oxidoreductase, chimeric enzyme, thiol-mediated detoxification pathway; HET: FAD PG4; 2.20A {Schistosoma mansoni} PDB: 3h4k_A* (A:107-257,A:412-463) Probab=41.52 E-value=22 Score=16.17 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=6.6 Q ss_pred ECCCCCHHHHHHHHH Q ss_conf 259830188899999 Q gi|254780293|r 108 SGGGLSGQASAICHG 122 (170) Q Consensus 108 ~GGG~sgQa~Airla 122 (170) -|||..|-+-|+.++ T Consensus 7 IGaGpaGl~aA~~la 21 (203) T 2v6o_A 7 IGGGSGGLAAGKEAA 21 (203) T ss_dssp ECCSHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHH T ss_conf 897889999999999 No 25 >>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thioredoxin reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} (A:187-322,A:469-521) Probab=41.42 E-value=24 Score=15.89 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=21.5 Q ss_pred HCCCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 385664107999825983018889999999 Q gi|254780293|r 95 VSQDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 95 ~~~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ......|||.| -|||..|-+-|+.++-+ T Consensus 21 ~~~~~~yDViV--IGaGpAGl~aA~~lar~ 48 (189) T 1hyu_A 21 LNKRDAYDVLI--VGSGPAGAAAAVYSARK 48 (189) T ss_dssp HHTSCCEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 77799885899--96789999999999978 No 26 >>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* (A:1-147,A:300-349) Probab=41.35 E-value=21 Score=16.30 Aligned_cols=23 Identities=30% Similarity=0.231 Sum_probs=17.6 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 6410799982598301888999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) .+|||.| -|+|..|-+-|++++- T Consensus 5 ~~yDviV--IGaG~aGl~aA~~la~ 27 (197) T 1zmd_A 5 IDADVTV--IGSGPGGYVAAIKAAQ 27 (197) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 6248899--8988899999999986 No 27 >>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* (A:1-121,A:252-323) Probab=41.22 E-value=24 Score=15.92 Aligned_cols=14 Identities=21% Similarity=0.275 Sum_probs=5.8 Q ss_pred ECCCCCHHHHHHHH Q ss_conf 25983018889999 Q gi|254780293|r 108 SGGGLSGQASAICH 121 (170) Q Consensus 108 ~GGG~sgQa~Airl 121 (170) -|||..|-+-|+.+ T Consensus 21 IGgGpaGlsaA~~l 34 (193) T 3f8d_A 21 VGLGPAAYGAALYS 34 (193) T ss_dssp ECCSHHHHHHHHHH T ss_pred ECCCHHHHHHHHHH T ss_conf 89888999999999 No 28 >>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grg_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grt_A* 1xan_A* 5grt_A* 2grt_A* 4grt_A* ... (A:1-156,A:310-360) Probab=40.93 E-value=17 Score=16.76 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=21.4 Q ss_pred HHHHCCCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 98738566410799982598301888999999 Q gi|254780293|r 92 FNTVSQDNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 92 l~~~~~~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) -........|||.| -|||..|.+-|++++- T Consensus 12 ~~~~~~~~~yDViV--IGaGpAGl~aA~~la~ 41 (207) T 3dk9_A 12 PPAAGAVASYDYLV--IGGGSGGLASARRAAE 41 (207) T ss_dssp -----CEEECSEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCCCCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 99989868737799--8888899999999996 No 29 >>3d8x_A Thioredoxin reductase 1; NADPH, yeast, , modpipe model of A6Z, cytoplasm, FAD, flavoprotein, NADP, oxidoreductase, redox- active center; HET: FAD NAP; 2.80A {Saccharomyces cerevisiae} (A:1-126,A:284-326) Probab=40.47 E-value=22 Score=16.17 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=19.0 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 664107999825983018889999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ..+|||.| -|||..|-+-|+.++-+ T Consensus 8 ~~~yDVII--IGaGpAGl~AA~~aar~ 32 (169) T 3d8x_A 8 HVHNKVTI--IGSGPAAHTAAIYLARA 32 (169) T ss_dssp -CEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 76189999--99869999999999978 No 30 >>1dxl_A Dihydrolipoamide dehydrogenase; multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex, flavoprotein; HET: FAD; 3.15A {Pisum sativum} (A:1-146,A:306-346) Probab=40.08 E-value=23 Score=15.98 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=15.3 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 66410799982598301888999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ..+|||.| -|||.+|-+-|++++- T Consensus 4 s~~yDViV--IGaGpAGl~AA~~aa~ 27 (187) T 1dxl_A 4 SDENDVVI--IGGGPGGYVAAIKAAQ 27 (187) T ss_dssp CCCCCEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 88688899--8888899999999997 No 31 >>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} (A:1-139,A:282-332) Probab=39.90 E-value=24 Score=15.95 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=14.0 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 641079998259830188899999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~Airla 122 (170) .+|||.| -|||..|.+-|++++ T Consensus 3 ~~yDviI--IGaGpAGl~aA~~la 24 (190) T 1ges_A 3 KHYDYIA--IGGGSGGIASINRAA 24 (190) T ss_dssp CEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHH T ss_conf 7688999--887889999999999 No 32 >>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unknown function; HET: FAD; 2.81A {Mycobacterium tuberculosis} (A:1-152,A:296-346) Probab=39.77 E-value=24 Score=15.90 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=12.2 Q ss_pred EEEEEEEECCCCCHHHHHHHHHH Q ss_conf 10799982598301888999999 Q gi|254780293|r 101 YDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 101 ~Di~~~V~GGG~sgQa~AirlaI 123 (170) |||.| -|||..|-+-|++++= T Consensus 3 yDviI--IG~GpaGl~aA~~aa~ 23 (203) T 1xdi_A 3 TRIVI--LGGGPAGYEAALVAAT 23 (203) T ss_dssp EEEEE--ECCSHHHHHHHHHHHH T ss_pred CCEEE--ECCCHHHHHHHHHHHH T ss_conf 88899--8788899999999985 No 33 >>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} (A:1-143,A:294-344) Probab=39.77 E-value=25 Score=15.77 Aligned_cols=13 Identities=38% Similarity=0.654 Sum_probs=4.7 Q ss_pred CCCCCHHHHHHHH Q ss_conf 5983018889999 Q gi|254780293|r 109 GGGLSGQASAICH 121 (170) Q Consensus 109 GGG~sgQa~Airl 121 (170) |+|..|-.-|+++ T Consensus 9 GaGpaG~~AA~~a 21 (194) T 2qae_A 9 GGGPGGYVASIKA 21 (194) T ss_dssp CCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9788999999999 No 34 >>2wwb_N 60S ribosomal protein L35; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Triticum aestivum} PDB: 1s1i_X 2wwa_N 2ww9_N (N:) Probab=39.60 E-value=21 Score=16.32 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=29.9 Q ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 1079998259830188899999999997657634487997 Q gi|254780293|r 101 YDVFATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKK 140 (170) Q Consensus 101 ~Di~~~V~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~ 140 (170) |+..+.-.-||-++....+|-.|||.|..++..-+..+++ T Consensus 29 ~~LR~qk~Tg~~~skIk~vRK~IARvlTV~nekq~~~lrk 68 (120) T 2wwb_N 29 AELKVQKLSRPSLPKIKTVRKSIACVLTVINEQQREAVRQ 68 (120) T ss_dssp HHTCSSCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9989999978880789999999999999984999999999 No 35 >>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} (G:1-46,G:242-298,G:405-453) Probab=39.24 E-value=26 Score=15.68 Aligned_cols=30 Identities=20% Similarity=0.240 Sum_probs=21.0 Q ss_pred HHHHHCCCCCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 99873856641079998259830188899999 Q gi|254780293|r 91 PFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 91 Pl~~~~~~~~~Di~~~V~GGG~sgQa~Airla 122 (170) |+........|||.| -|+|+.|-.-|..++ T Consensus 2 pm~~~~~~~~~DviI--IG~G~aG~~~A~~la 31 (152) T 2bcg_G 2 HMDQETIDTDYDVIV--LGTGITECILSGLLS 31 (152) T ss_dssp -----CCCCBCSEEE--ECCSHHHHHHHHHHH T ss_pred CCCCCCCCCCCCEEE--ECCCHHHHHHHHHHH T ss_conf 998133699887899--895989999999999 No 36 >>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesis; HET: FAD; 2.0A {Klebsiella pneumoniae} (A:1-38,A:209-240,A:336-384) Probab=38.53 E-value=26 Score=15.75 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=15.1 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 6410799982598301888999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ..||+.| -|+|++|-+-|..++- T Consensus 2 k~~DviI--VGAG~aG~~~A~~La~ 24 (119) T 2bi7_A 2 KSKKILI--VGAGFSGAVIGRQLAE 24 (119) T ss_dssp CCCEEEE--ECCSHHHHHHHHHHHT T ss_pred CCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 9687999--8960999999999986 No 37 >>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} (A:1-68,A:152-323) Probab=38.03 E-value=21 Score=16.30 Aligned_cols=72 Identities=19% Similarity=0.196 Sum_probs=47.0 Q ss_pred EEEEEEC----CCCEEEEECCCHHHH--CCCHHHHH-HHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999981----897399941008884--46989999-9999998738566410799982598301888999999999976 Q gi|254780293|r 57 ARVWIKS----GSGKFTINYVDISKY--FTQDLLVL-NIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170) Q Consensus 57 ArV~l~~----GsG~I~INgk~~~~Y--f~~~~~r~-~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170) ++||+|- =+|.|+++|--.... |.|+.... .-.--+++....++.|..+--.|||-+ -.||+++|.. T Consensus 41 ~~i~~K~E~~~ptGS~K~Rga~~~i~~l~~np~~~~G~~t~g~EI~~Q~~~~D~vv~~vG~GG~------~~Gi~~~lk~ 114 (240) T 1v71_A 41 AEVFFKCENFQKMGAFKFRGALNALSQLYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGL------LSGSALAARH 114 (240) T ss_dssp SEEEEEEGGGSGGGBTHHHHHHHHHTTCSSSHHHHHHHTHHHHHHHHHHCCCSEEEEECSSSHH------HHHHHHHHHH T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHH------HHHHHHHHHH T ss_conf 9799997889987681999999999986551323531667999999973899989985781888------9999999997 Q ss_pred HCHHH Q ss_conf 57634 Q gi|254780293|r 130 FQPDL 134 (170) Q Consensus 130 ~~p~~ 134 (170) +.|+. T Consensus 115 ~~~~~ 119 (240) T 1v71_A 115 FAPNC 119 (240) T ss_dssp HCTTC T ss_pred HCCCC T ss_conf 49985 No 38 >>1z0w_A Putative protease LA homolog type; ATP-dependent protease, catalytic Ser-Lys DYAD, B-type LON, hydrolase; 1.20A {Archaeoglobus fulgidus} PDB: 1z0b_A 1z0c_A 1z0e_A 1z0g_A 1z0t_A 1z0v_A (A:) Probab=37.94 E-value=27 Score=15.59 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=42.3 Q ss_pred EEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHH-HC-CCCCEEEEEEEECCC--CCHH--HHHHHHHHHHHHHHH Q ss_conf 999818973999410088844698999999999987-38-566410799982598--3018--889999999999765 Q gi|254780293|r 59 VWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNT-VS-QDNMYDVFATVSGGG--LSGQ--ASAICHGVAKALTYF 130 (170) Q Consensus 59 V~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~-~~-~~~~~Di~~~V~GGG--~sgQ--a~AirlaIarAL~~~ 130 (170) +...+|+|.+.++|.+-..-. .....+..-+.- .+ ...++|+++++.++. ..|. .-|+.+||.-++... T Consensus 37 ~~~~~g~~~~~~~g~~~~~~~---es~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~G~sa~Laia~ai~sa~~~~ 111 (207) T 1z0w_A 37 PSMSKSEGRVIATGRLQEIAR---EAVMNVSAIIKKYTGRDISNMDVHIQFVGTYEGVEGDSASISIATAVISAIEGI 111 (207) T ss_dssp ECC---CCCEECCSTTHHHHH---HHHHHHHHHHHHHHCCCGGGEEEEEEESSCCTTEECCTTBHHHHHHHHHHHHTC T ss_pred ECCCCCCCEEEECCCCHHHHH---HHHHHHHHHHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHCCC T ss_conf 633378873897486225788---888999999976310134454400202531123654456389999999985267 No 39 >>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} (A:1-156,A:302-352) Probab=37.91 E-value=27 Score=15.65 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=18.3 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 66410799982598301888999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ..+|||.| -|||..|-+-|++++= T Consensus 9 ~~~yDviI--IGaGpaGl~aA~~la~ 32 (207) T 2hqm_A 9 TKHYDYLV--IGGGSGGVASARRAAS 32 (207) T ss_dssp -CEEEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 97367899--8988899999999996 No 40 >>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} (A:1-141,A:282-337) Probab=37.44 E-value=23 Score=16.03 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=11.9 Q ss_pred CEEEEEEEECCCCCHHHHHHHHH Q ss_conf 41079998259830188899999 Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQa~Airla 122 (170) +|||.| -|||..|-+-|++++ T Consensus 3 ~YDViV--IGaGpAGl~AA~~aa 23 (197) T 1ebd_A 3 ETETLV--VGAGPGGYVAAIRAA 23 (197) T ss_dssp ECSEEE--ECCSHHHHHHHHHHH T ss_pred CCCEEE--ECCCHHHHHHHHHHH T ss_conf 479899--997889999999999 No 41 >>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphide oxidoreductase; HET: FAD; 1.90A {Escherichia coli} (A:1-111,A:252-310) Probab=37.24 E-value=28 Score=15.50 Aligned_cols=13 Identities=46% Similarity=0.718 Sum_probs=4.6 Q ss_pred CCCCCHHHHHHHH Q ss_conf 5983018889999 Q gi|254780293|r 109 GGGLSGQASAICH 121 (170) Q Consensus 109 GGG~sgQa~Airl 121 (170) |||.+|-+-|+.+ T Consensus 8 GgGpaGl~aA~~l 20 (170) T 1fl2_A 8 GSGPAGAAAAIYS 20 (170) T ss_dssp CCSHHHHHHHHHH T ss_pred CCCHHHHHHHHHH T ss_conf 9879999999999 No 42 >>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} (A:1-140,A:297-339) Probab=37.05 E-value=27 Score=15.64 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=14.6 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 641079998259830188899999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~Airla 122 (170) .+|||.+ -|+|..|.+-|++++ T Consensus 3 ~~yDViV--IGaGpAG~~AA~~aa 24 (183) T 3l8k_A 3 LKYDVVV--IGAGGAGYHGAFRLA 24 (183) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHH T ss_conf 7685899--898989999999999 No 43 >>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus HB8} PDB: 2eq8_A* 2eq9_A* (A:1-139,A:298-337) Probab=36.71 E-value=27 Score=15.61 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=16.7 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 6641079998259830188899999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~Airla 122 (170) ..+|||.| -|+|..|-.-|++++ T Consensus 4 ~~~yDviV--IGaG~aG~~aA~~aa 26 (179) T 2eq6_A 4 MKTYDLIV--IGTGPGGYHAAIRAA 26 (179) T ss_dssp CEEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCCEEE--ECCCHHHHHHHHHHH T ss_conf 87189999--988889999999999 No 44 >>2zzc_A Thioredoxin reductase 1, cytoplasmic; rossmann fold, alternative splicing, electron transport, FAD, flavoprotein, NADP, nucleus, oxidoreductase; HET: FAD NAP; 2.60A {Homo sapiens} PDB: 2zzb_A* 2zz0_A* 2j3n_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* (A:1-175,A:337-378) Probab=35.49 E-value=30 Score=15.32 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=18.1 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 664107999825983018889999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ...|||.| -|||.+|-+-|+.|+=+ T Consensus 24 ~~~~DViI--VGaGpAGl~aA~~La~~ 48 (217) T 2zzc_A 24 SYDYDLII--IGGGSGGLAAAKEAAQY 48 (217) T ss_dssp CCSEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 68999899--89788999999999968 No 45 >>1ykw_A Rubisco-like protein; beta-alpha-barrel, unknown function; 2.00A {Chlorobaculum tepidum} (A:145-435) Probab=35.46 E-value=26 Score=15.68 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=27.3 Q ss_pred CCEEEEEEEECCCCCHH-------HHHHHHHHHHHHH--------HHCHHHHHHHHHCCC Q ss_conf 64107999825983018-------8899999999997--------657634487997798 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQ-------ASAICHGVAKALT--------YFQPDLRPQIKKGGF 143 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQ-------a~AirlaIarAL~--------~~~p~~r~~Lk~~gl 143 (170) ++-|+.... |||+.|. +.|+|.||--++. +..|+|+..|.+-|. T Consensus 229 G~~D~il~~-GGGi~gHPdG~~aGa~A~RqA~ea~~~G~~l~e~Ak~~~eL~~Ale~wg~ 287 (291) T 1ykw_A 229 GNVDFGFVP-GRGVFGHPMGPKAGAKSIRQAWEAIEQGISIETWAETHPELQAMVDQSLL 287 (291) T ss_dssp CSSCSEECB-SSSSSSCTTCHHHHHHHHHHHHHHHHTTCCHHHHHTTCHHHHHHHHC--- T ss_pred CCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHHHH T ss_conf 996389976-84134599666889999999999998499979986339899999999866 No 46 >>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, alternative splicing, coiled coil, cytoplasm, nucleus, protein transport; 2.61A {Homo sapiens} PDB: 2zme_B (B:153-218) Probab=35.32 E-value=19 Score=16.48 Aligned_cols=39 Identities=26% Similarity=0.209 Sum_probs=29.1 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCC Q ss_conf 259830188899999999997657634487997798335755 Q gi|254780293|r 108 SGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSR 149 (170) Q Consensus 108 ~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R 149 (170) .+||+|.+--|-+++||-.|..- .-..-.+.|+|-||-- T Consensus 13 ~~~~ita~e~A~~~giS~~lA~E---~Ll~AE~~G~lCRDes 51 (66) T 3cuq_B 13 EKGSLTSEEFAKLVGMSVLLAKE---RLLLAEKMGHLCRDDS 51 (66) T ss_dssp HTSCBCHHHHHHHHTCCHHHHHH---HHHHHHHTTSEEEEES T ss_pred CCCCCCHHHHHHHHCCCHHHHHH---HHHHHHHCCCEEEECC T ss_conf 38996899999996988999999---9999997797899788 No 47 >>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} (A:1-58,A:216-269,A:483-546) Probab=35.05 E-value=27 Score=15.59 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=17.3 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 6641079998259830188899999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~Airla 122 (170) ...|||.| -|+|.+|-.-|.+|+ T Consensus 11 ~~~~DvvI--IGaG~aG~~~A~~La 33 (176) T 2jbv_A 11 DREFDYIV--VGGGSAGAAVAARLS 33 (176) T ss_dssp CCEEEEEE--ECCSHHHHHHHHHHT T ss_pred CCCCCEEE--ECCCHHHHHHHHHHH T ss_conf 99433899--896489999999997 No 48 >>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} (A:1-49,A:118-239,A:341-469) Probab=34.58 E-value=31 Score=15.24 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=5.5 Q ss_pred ECCCCCHHHHHHHH Q ss_conf 25983018889999 Q gi|254780293|r 108 SGGGLSGQASAICH 121 (170) Q Consensus 108 ~GGG~sgQa~Airl 121 (170) -|+|.+|-+-|+.+ T Consensus 14 ~g~g~~~~~~~~~~ 27 (300) T 1pn0_A 14 VGAGPAGLMAARVL 27 (300) T ss_dssp ECCSHHHHHHHHHH T ss_pred ECCCHHHHHHHHHH T ss_conf 89398999999998 No 49 >>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* (A:115-249,A:384-462) Probab=34.55 E-value=31 Score=15.24 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=15.8 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 64107999825983018889999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ..|||.| -|+|.+|-+-|+.++-+ T Consensus 13 ~~~DViV--IGaG~aGl~aA~~la~~ 36 (214) T 2gag_A 13 VHTDVLV--VGAGPAGLAAAREASRS 36 (214) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 3288999--99419999999999978 No 50 >>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} (A:1-63,A:202-257,A:473-536) Probab=32.77 E-value=31 Score=15.22 Aligned_cols=26 Identities=31% Similarity=0.389 Sum_probs=18.1 Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 5664107999825983018889999999 Q gi|254780293|r 97 QDNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 97 ~~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ....||+.| -|||..|-.-|.+|+=. T Consensus 23 ~~~~~Dvvi--vG~G~aG~~~A~~l~~g 48 (183) T 1ju2_A 23 LEGSYDYVI--VGGGTSGCPLAATLSEK 48 (183) T ss_dssp SEEEEEEEE--ECCSTTHHHHHHHHTTT T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHHCC T ss_conf 479635799--89538999999998579 No 51 >>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:117-228,A:312-349) Probab=32.39 E-value=31 Score=15.24 Aligned_cols=16 Identities=31% Similarity=0.449 Sum_probs=14.0 Q ss_pred EEEECCCEEEEEEEEC Q ss_conf 1311121089999981 Q gi|254780293|r 48 ATGKRKTSIARVWIKS 63 (170) Q Consensus 48 ~tGrRKtsvArV~l~~ 63 (170) +-||+.||.|.|.+.| T Consensus 90 s~~R~hTS~asV~VlP 105 (150) T 1zbt_A 90 SQGRVHTSTATVLVXP 105 (150) T ss_dssp SSCCCEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEEE T ss_conf 7774268888999971 No 52 >>1rre_A ATP-dependent protease LA; catalytic Ser-Lys DYAD, hydrolase; HET: MSE; 1.75A {Escherichia coli} (A:) Probab=32.32 E-value=34 Score=15.00 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=43.1 Q ss_pred CCCCCCEEEEEC--CCEEEE--EEEECCCCEEEEECCCHHHHCCC-HHHHHHHHHHHH---HH-CCCCCEEEEEEEECCC Q ss_conf 543550013111--210899--99981897399941008884469-899999999998---73-8566410799982598 Q gi|254780293|r 41 DQWQRSYATGKR--KTSIAR--VWIKSGSGKFTINYVDISKYFTQ-DLLVLNIKRPFN---TV-SQDNMYDVFATVSGGG 111 (170) Q Consensus 41 d~~g~~~~tGrR--KtsvAr--V~l~~GsG~I~INgk~~~~Yf~~-~~~r~~i~~Pl~---~~-~~~~~~Di~~~V~GGG 111 (170) |.-|..++.+-. ....-+ +...+|++.+.+.+..-...... ...+..++.-.. +. .....+||++++.++. T Consensus 9 ~~~g~v~~~~v~~~~~~~~~iE~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~i~i~~~~~~ 88 (200) T 1rre_A 9 NRVGQVTGLAWTEVGGDLLTIETACVPGKGKLTYTGSLGEVXQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGA 88 (200) T ss_dssp -CCEEEEEEEEETTEEEEEEEEEEEEECSSCEEEESSBCHHHHHHHHHHHHHHHHTHHHHTCCTTTTTSEEEEEECSSTT T ss_pred CCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCEEEEECCCC T ss_conf 96279987799579987799999998268863223455401257899999999998665067701332230345421465 Q ss_pred C--CHHHH--HHHHHHHHHHH Q ss_conf 3--01888--99999999997 Q gi|254780293|r 112 L--SGQAS--AICHGVAKALT 128 (170) Q Consensus 112 ~--sgQa~--AirlaIarAL~ 128 (170) . .|.+- |+.+||.-++. T Consensus 89 ~~~~G~s~~Laia~ai~sa~~ 109 (200) T 1rre_A 89 TPKDGPAAGIAXCTALVSCLT 109 (200) T ss_dssp SCEESSTTHHHHHHHHHHHHH T ss_pred CCCCCCHHHHHHHHHHHHHHH T ss_conf 445663378999999999985 No 53 >>1rhy_A IGPD, imidazole glycerol phosphate dehydratase; dehydratases, histidine biosynthesis, LEFT-handed B-A-B crossover motif; 2.30A {Filobasidiella neoformans} (A:) Probab=32.06 E-value=34 Score=14.97 Aligned_cols=84 Identities=12% Similarity=0.037 Sum_probs=53.3 Q ss_pred EEECCCEEEEEEEE-CCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHH Q ss_conf 31112108999998-189739994100888446989999999999873856641079998-2598301888999999999 Q gi|254780293|r 49 TGKRKTSIARVWIK-SGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATV-SGGGLSGQASAICHGVAKA 126 (170) Q Consensus 49 tGrRKtsvArV~l~-~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V-~GGG~sgQa~AirlaIarA 126 (170) .--=-.|.|+|.+. .|-+-+..|...-.+.... ..-+.+..=|.-.-......+++.+ .|.-..=+++|+--|++|| T Consensus 102 ~vPMDEala~v~vDlsGRp~~~~~~~~~~~~iG~-~~~el~~~ff~sla~~a~~tlHi~~~~G~N~HH~~Ea~FKalg~A 180 (202) T 1rhy_A 102 YAPLDESLSRAVIDISSRPYFMCHLPFTREKVGD-LSTEMVSHLLQSFAFAAGVTLHIDSIRGENNHHIAESAFKALALA 180 (202) T ss_dssp EEEETTEEEEEEEECSSCCEEEEECCCCSSEETT-EETHHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHHHH T ss_pred EEECCCEEEEEECCCCCCCEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHHH T ss_conf 9850641146742678985242025766442477-535658999999983477369999874587078999999999999 Q ss_pred HHHH-CHH Q ss_conf 9765-763 Q gi|254780293|r 127 LTYF-QPD 133 (170) Q Consensus 127 L~~~-~p~ 133 (170) |-.. .+. T Consensus 181 Lr~A~~~~ 188 (202) T 1rhy_A 181 IRMAISRT 188 (202) T ss_dssp HHHHHCC- T ss_pred HHHHHCCC T ss_conf 99984823 No 54 >>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, substrate complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* (A:1-69,A:140-227,A:320-420) Probab=31.91 E-value=33 Score=15.07 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=11.4 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 641079998259830188899999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~Airla 122 (170) ..|||.| -|+|++|-+-|++|+ T Consensus 31 ~~~~~~i--~g~g~~g~~~a~~~~ 52 (258) T 2dkh_A 31 SQVDVLI--VGCGPAGLTLAAQLA 52 (258) T ss_dssp SEEEEEE--ECCSHHHHHHHHHHT T ss_pred CCCCEEE--ECCCHHHHHHHHHHH T ss_conf 8689999--993989999999987 No 55 >>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA; HET: FAD; 2.10A {Thermus thermophilus HB8} (A:1-118,A:276-335) Probab=31.48 E-value=35 Score=14.91 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=4.0 Q ss_pred CCCCCHHHHHHH Q ss_conf 598301888999 Q gi|254780293|r 109 GGGLSGQASAIC 120 (170) Q Consensus 109 GGG~sgQa~Air 120 (170) |||.+|-+-|+. T Consensus 12 GaGPaGL~AA~~ 23 (178) T 2zbw_A 12 GAGPTGLFAGFY 23 (178) T ss_dssp CCSHHHHHHHHH T ss_pred CCCHHHHHHHHH T ss_conf 986999999999 No 56 >>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} (A:1-142,A:285-334) Probab=31.14 E-value=35 Score=14.88 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=17.9 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 64107999825983018889999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) .+|||.| -|||..|-+-|++++-. T Consensus 4 ~~yDviV--IGaGpAGl~aA~~la~~ 27 (192) T 1lvl_A 4 IQTTLLI--IGGGPGGYVAAIRAGQL 27 (192) T ss_dssp EECSEEE--ECCSHHHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 5289999--96798999999999978 No 57 >>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, disulfide oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} (A:1-120,A:275-333) Probab=30.11 E-value=37 Score=14.77 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=18.5 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 64107999825983018889999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ..|||.| -|||+.|-+-||.++-+ T Consensus 7 ~~yDviI--IG~GPAGlsAAi~a~r~ 30 (179) T 1vdc_A 7 HNTRLCI--VGSGPAAHTAAIYAARA 30 (179) T ss_dssp EEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 6987999--99769999999999988 No 58 >>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} (B:1-46,B:215-272,B:525-566) Probab=29.64 E-value=37 Score=14.76 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=14.2 Q ss_pred CEEEEEEEECCCCCHHHHHHHHH Q ss_conf 41079998259830188899999 Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQa~Airla 122 (170) .|||.| -|+|.+|-.-|.+|+ T Consensus 2 ~~Dvii--iG~G~~G~~~A~~l~ 22 (146) T 3fim_B 2 DFDYVV--VGAGNAGNVVAARLT 22 (146) T ss_dssp CEEEEE--SCCSTTHHHHHHHHT T ss_pred CCCEEE--ECCCHHHHHHHHHHH T ss_conf 878799--896489999999997 No 59 >>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} (A:1-79,A:181-237,A:333-367) Probab=29.30 E-value=36 Score=14.81 Aligned_cols=17 Identities=29% Similarity=0.304 Sum_probs=10.4 Q ss_pred EECCCCCHHHHHHHHHH Q ss_conf 82598301888999999 Q gi|254780293|r 107 VSGGGLSGQASAICHGV 123 (170) Q Consensus 107 V~GGG~sgQa~AirlaI 123 (170) |-|+|++|-+-|.+++= T Consensus 6 IVGAG~AGl~aA~~LAq 22 (171) T 1i8t_A 6 IVGSGLFGAVCANELKK 22 (171) T ss_dssp EECCSHHHHHHHHHHGG T ss_pred EECCCHHHHHHHHHHHH T ss_conf 98976899999999997 No 60 >>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} (A:1-41,A:120-191,A:298-401) Probab=29.13 E-value=38 Score=14.66 Aligned_cols=11 Identities=45% Similarity=0.821 Sum_probs=4.3 Q ss_pred ECCCCCHHHHH Q ss_conf 25983018889 Q gi|254780293|r 108 SGGGLSGQASA 118 (170) Q Consensus 108 ~GGG~sgQa~A 118 (170) -|+|+.|-+-| T Consensus 11 vGag~~G~~~a 21 (217) T 3ihg_A 11 VGAGLGGLSTA 21 (217) T ss_dssp ECCSHHHHHHH T ss_pred ECCCHHHHHHH T ss_conf 99298999999 No 61 >>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} (A:1-76,A:214-277,A:412-471) Probab=28.94 E-value=39 Score=14.64 Aligned_cols=15 Identities=47% Similarity=0.631 Sum_probs=6.6 Q ss_pred ECCCCCHHHHHHHHH Q ss_conf 259830188899999 Q gi|254780293|r 108 SGGGLSGQASAICHG 122 (170) Q Consensus 108 ~GGG~sgQa~Airla 122 (170) -|+|++|-+-|+.|+ T Consensus 10 IGaG~aGl~aA~~l~ 24 (200) T 1s3e_A 10 VGGGISGMAAAKLLH 24 (200) T ss_dssp ECCBHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHH T ss_conf 897889999999998 No 62 >>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} (A:425-495) Probab=28.27 E-value=39 Score=14.60 Aligned_cols=44 Identities=14% Similarity=0.054 Sum_probs=26.8 Q ss_pred HHHHHHHHHHHCC-------CCCEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999987385-------66410799982598301888999999999976 Q gi|254780293|r 85 VLNIKRPFNTVSQ-------DNMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170) Q Consensus 85 r~~i~~Pl~~~~~-------~~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170) ...+...+..++. ...++-.+.-.|..+| .-+--|.||||||+. T Consensus 20 ~~~i~~~~~~~~l~~~i~~~~~g~~t~~~~~g~~LS-gGqrQrialARAl~~ 70 (71) T 2hyd_A 20 DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLS-GGQKQRLSIARIFLN 70 (71) T ss_dssp HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSC-HHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC-HHHHHHHHHHHHHHC T ss_conf 999999999949869997366877888668998589-999999999999960 No 63 >>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic resolution; HET: FAD; 0.92A {Streptomyces SP} (A:1-48,A:115-153,A:214-284,A:456-504) Probab=27.16 E-value=41 Score=14.45 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=16.5 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 64107999825983018889999999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ..|||. |-|||.+|-+-|+.++-. T Consensus 4 ~~~dvi--IIGaG~aGl~aA~~l~~~ 27 (207) T 1n4w_A 4 GYVPAV--VIGTGYGAAVSALRLGEA 27 (207) T ss_dssp CEEEEE--EECCSHHHHHHHHHHHHT T ss_pred CCCCEE--EECCCHHHHHHHHHHHHC T ss_conf 889699--979688999999999868 No 64 >>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y (1:111-220,1:304-365) Probab=27.12 E-value=35 Score=14.88 Aligned_cols=17 Identities=41% Similarity=0.497 Sum_probs=14.2 Q ss_pred EEEECCCEEEEEEEECC Q ss_conf 13111210899999818 Q gi|254780293|r 48 ATGKRKTSIARVWIKSG 64 (170) Q Consensus 48 ~tGrRKtsvArV~l~~G 64 (170) .-|||+||.|.|.+.|- T Consensus 87 ~~~rrhTs~~~V~VlP~ 103 (172) T 2ihr_1 87 ASGRRHTSFAGVEVIPE 103 (172) T ss_dssp SSCCEEEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEECC T ss_conf 65522456789999544 No 65 >>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} (A:1-85,A:242-323,A:444-504) Probab=26.44 E-value=43 Score=14.37 Aligned_cols=17 Identities=41% Similarity=0.477 Sum_probs=10.0 Q ss_pred EEECCCCCHHHHHHHHH Q ss_conf 98259830188899999 Q gi|254780293|r 106 TVSGGGLSGQASAICHG 122 (170) Q Consensus 106 ~V~GGG~sgQa~Airla 122 (170) -|-|||++|-+-|..++ T Consensus 17 vIIGaGisGLsaA~~La 33 (228) T 1sez_A 17 AVIGAGVSGLAAAYKLK 33 (228) T ss_dssp EEECCSHHHHHHHHHHH T ss_pred EEECCCHHHHHHHHHHH T ss_conf 99897889999999998 No 66 >>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.15A {Colwellia psychrerythraea 34H} (A:1-144,A:292-342) Probab=26.19 E-value=43 Score=14.34 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=14.7 Q ss_pred CEEEEEEEECCCCCHHHHHHHHH Q ss_conf 41079998259830188899999 Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQa~Airla 122 (170) +|||. |-|||..|-+-|++++ T Consensus 8 ~yDvi--IIGaGpaG~~aA~~la 28 (195) T 3ic9_A 8 NVDVA--IIGTGTAGXGAYRAAK 28 (195) T ss_dssp EEEEE--EECCSHHHHHHHHHHH T ss_pred CCCEE--EECCCHHHHHHHHHHH T ss_conf 87989--9888889999999998 No 67 >>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} (A:1-119,A:273-325) Probab=25.64 E-value=44 Score=14.28 Aligned_cols=25 Identities=44% Similarity=0.656 Sum_probs=17.0 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 664107999825983018889999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) ...|||.| -|||..|.+-|+.++-+ T Consensus 6 ~~~~DviI--IG~GPAGlsAAiyaar~ 30 (172) T 2q7v_A 6 AHDYDVVI--IGGGPAGLTAAIYTGRA 30 (172) T ss_dssp CEEEEEEE--ECCSHHHHHHHHHHHHT T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 87799999--99879999999999978 No 68 >>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} (A:1-224,A:375-459) Probab=24.99 E-value=45 Score=14.20 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=9.0 Q ss_pred EEEEE-EECC---CCCHHHHHHHHH Q ss_conf 07999-8259---830188899999 Q gi|254780293|r 102 DVFAT-VSGG---GLSGQASAICHG 122 (170) Q Consensus 102 Di~~~-V~GG---G~sgQa~Airla 122 (170) |+.+. .+|+ +...-..|...| T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (309) T 2bs2_A 243 EAACWDMHGFNRLGGNSVSEAVVAG 267 (309) T ss_dssp GGEECCSSTTCCCTTHHHHHHHHHH T ss_pred HHHCCCCCCCCCCCCCCCCCCCCHH T ss_conf 5530443256546765333333104 No 69 >>2f1d_A IGPD 1, imidazoleglycerol-phosphate dehydratase 1; herbicide, manganese, X-RAY crystallography, histidine biosynthesis, lyase; 3.00A {Arabidopsis thaliana} (A:) Probab=24.89 E-value=46 Score=14.19 Aligned_cols=79 Identities=13% Similarity=0.057 Sum_probs=48.7 Q ss_pred ECCCEEEEEEEE-CCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEE-ECCCCCHHHHHHHHHHHHHHH Q ss_conf 112108999998-189739994100888446989999999999873856641079998-259830188899999999997 Q gi|254780293|r 51 KRKTSIARVWIK-SGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATV-SGGGLSGQASAICHGVAKALT 128 (170) Q Consensus 51 rRKtsvArV~l~-~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V-~GGG~sgQa~AirlaIarAL~ 128 (170) -=-.|.|+|.+. -|-+-+..|...-.+..... .-+.+..=|.-.-......+++.+ .|.-..-+++|+--|++|||- T Consensus 106 PMDEala~v~vDlsGRp~~~~~~~~~~~~iG~~-~~el~~~Ff~s~a~~a~~tlHi~~~~G~N~HH~~Ea~FKalg~ALr 184 (207) T 2f1d_A 106 PLDEALIHVSLDLSGRPYLGYNLEIPTQRVGTY-DTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIEATFKAFARALR 184 (207) T ss_dssp EETTEEEEEEEECCSSCEEEEECCCSSSEETTE-ETTHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEEEECCCCCCEEECCCCCCCCCCCC-CCHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHH T ss_conf 364418999996588963464277654424876-7067899999876367648999988557728999999999999999 Q ss_pred HH Q ss_conf 65 Q gi|254780293|r 129 YF 130 (170) Q Consensus 129 ~~ 130 (170) .. T Consensus 185 ~A 186 (207) T 2f1d_A 185 QA 186 (207) T ss_dssp HH T ss_pred HH T ss_conf 98 No 70 >>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* (A:1-82,A:184-260,A:393-424) Probab=24.53 E-value=46 Score=14.15 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=12.7 Q ss_pred CEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 410799982598301888999999 Q gi|254780293|r 100 MYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ++||.| -|||++|-+-|+.++- T Consensus 6 k~DVII--IGAGiAGLSAA~~LAk 27 (191) T 2b9w_A 6 DSRIAI--IGAGPAGLAAGMYLEQ 27 (191) T ss_dssp TCCEEE--ECCSHHHHHHHHHHHH T ss_pred CCCEEE--ECCCHHHHHHHHHHHH T ss_conf 998999--8984899999999985 No 71 >>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} (A:84-191,A:274-312) Probab=24.43 E-value=43 Score=14.36 Aligned_cols=16 Identities=31% Similarity=0.314 Sum_probs=13.8 Q ss_pred EEEECCCEEEEEEEEC Q ss_conf 1311121089999981 Q gi|254780293|r 48 ATGKRKTSIARVWIKS 63 (170) Q Consensus 48 ~tGrRKtsvArV~l~~ 63 (170) .-||||||.|.|.+.| T Consensus 86 ~~~kr~ts~v~V~vlP 101 (147) T 1rq0_A 86 SGGRIHTSTATVAVLP 101 (147) T ss_dssp CSCCCEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEEE T ss_conf 7675566767999997 No 72 >>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus HB8} PDB: 2eq7_A* (A:1-136,A:282-331) Probab=23.35 E-value=49 Score=14.01 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=6.0 Q ss_pred ECCCCCHHHHHHHHH Q ss_conf 259830188899999 Q gi|254780293|r 108 SGGGLSGQASAICHG 122 (170) Q Consensus 108 ~GGG~sgQa~Airla 122 (170) -|||..|-+-|++++ T Consensus 7 IG~GpaG~~aA~~aa 21 (186) T 2yqu_A 7 IGAGPGGYVAAIRAA 21 (186) T ss_dssp ECCSHHHHHHHHHHH T ss_pred ECCCHHHHHHHHHHH T ss_conf 898889999999998 No 73 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:121-231,A:315-365) Probab=23.33 E-value=46 Score=14.18 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.7 Q ss_pred EEEECCCEEEEEEEEC Q ss_conf 1311121089999981 Q gi|254780293|r 48 ATGKRKTSIARVWIKS 63 (170) Q Consensus 48 ~tGrRKtsvArV~l~~ 63 (170) .-|||+||.|.|.+.| T Consensus 89 ~~~rr~Ts~a~V~VlP 104 (162) T 1gqe_A 89 SGGRRHTSFSSAFVYP 104 (162) T ss_dssp SSCCEEEEEEEEEEEE T ss_pred CCCCEEEEEEEEEEEC T ss_conf 8884787666788856 No 74 >>2oem_A 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; rubisco-like protein, isomerase; HET: KCX 1AE; 1.70A {Geobacillus kaustophilus} PDB: 2oel_A* 2oek_A* 2oej_A (A:120-413) Probab=23.21 E-value=49 Score=13.99 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=27.7 Q ss_pred EEEEEEECCCCCHH-------HHHHHHHHHHHHHHH--------CHHHHHHHHHCCCCCCC Q ss_conf 07999825983018-------889999999999765--------76344879977983357 Q gi|254780293|r 102 DVFATVSGGGLSGQ-------ASAICHGVAKALTYF--------QPDLRPQIKKGGFLTRD 147 (170) Q Consensus 102 Di~~~V~GGG~sgQ-------a~AirlaIarAL~~~--------~p~~r~~Lk~~glLt~D 147 (170) |+.... |||+.|. +-|+|.|+--++... .|+|+..|.+-|..+-| T Consensus 234 Dvil~~-GGGi~gHP~G~~aGa~A~rqA~ea~~~g~~l~e~Ak~~~eL~~Al~~wg~~~~~ 293 (294) T 2oem_A 234 DTIVNA-GGGIHGHPDGAIGGGRAFRAAIDAVLAGRPLRAAAAENEALQKAIDRWGVVEVE 293 (294) T ss_dssp SSEEEE-SHHHHTSTTHHHHHHHHHHHHHHHHHHTCCHHHHHTTCHHHHHHHHHHCCC--- T ss_pred EEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHCCCEEE T ss_conf 699974-752146998748889999999999981999899863299999999985878750 No 75 >>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 2q6u_A* (A:1-41,A:153-211,A:330-397) Probab=22.76 E-value=50 Score=13.94 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=15.0 Q ss_pred CCEEEEEEEECCCCCHHHHHHHHH Q ss_conf 641079998259830188899999 Q gi|254780293|r 99 NMYDVFATVSGGGLSGQASAICHG 122 (170) Q Consensus 99 ~~~Di~~~V~GGG~sgQa~Airla 122 (170) ..|||.+ -|||++|-+-|+.++ T Consensus 3 ~~~~~~v--ig~g~~g~~~a~~~~ 24 (168) T 2oln_A 3 ESYDVVV--VGGGPVGLATAWQVA 24 (168) T ss_dssp CEEEEEE--ECCSHHHHHHHHHHH T ss_pred CCCCEEE--ECCCHHHHHHHHHHH T ss_conf 8787899--896899999999999 No 76 >>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} (A:255-334) Probab=22.56 E-value=47 Score=14.09 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=26.2 Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCC Q ss_conf 25983018889999999999765763448799779833575541 Q gi|254780293|r 108 SGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIV 151 (170) Q Consensus 108 ~GGG~sgQa~AirlaIarAL~~~~p~~r~~Lk~~glLt~D~R~~ 151 (170) .+||..|- ++|..+++-.--.....+.|.|-+.||+.|.||=+ T Consensus 18 f~ggPvGl-~tiA~~l~e~~~Tie~viEPyLiq~g~I~RTpRGR 60 (80) T 1in4_A 18 YRGGPVGL-NALAASLGVEADTLSEVYEPYLLQAGFLARTPRGR 60 (80) T ss_dssp STTCCBCH-HHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEE T ss_pred CCCCCHHH-HHHHHHHCCCHHHHHHHHHHHHHHHCHHHHCCHHH T ss_conf 48986259-99999818971217888878998724464295278 No 77 >>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution; 1.04A {Bos taurus} (A:1-41,A:233-288,A:396-433) Probab=22.27 E-value=51 Score=13.88 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=18.7 Q ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 566410799982598301888999999 Q gi|254780293|r 97 QDNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 97 ~~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) +..+++|.| -|||.+|-.-|.+++- T Consensus 3 ~~~~~~vvv--iG~G~~g~~~a~~l~~ 27 (135) T 1d5t_A 3 MDEEYDVIV--LGTGLTECILSGIMSV 27 (135) T ss_dssp CCSBCSEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 998768899--8959899999999998 No 78 >>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} (A:1-85,A:181-251,A:332-399) Probab=21.95 E-value=52 Score=13.84 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 99999999976576344879977983357 Q gi|254780293|r 119 ICHGVAKALTYFQPDLRPQIKKGGFLTRD 147 (170) Q Consensus 119 irlaIarAL~~~~p~~r~~Lk~~glLt~D 147 (170) .-.+|+.||..++.+++|.|++.--|-.| T Consensus 194 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 222 (224) T 1v0j_A 194 MHMAIASALNMYDNVLAPHLRDGVPLLQD 222 (224) T ss_dssp HHHHHHHHHHHHHHTHHHHHHHCCCCC-- T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 99999999999999975504468885889 No 79 >>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} (A:1-38,A:256-374) Probab=21.64 E-value=53 Score=13.80 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=37.3 Q ss_pred CHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHH Q ss_conf 088844698999999999987385664107999825983018889999999999 Q gi|254780293|r 74 DISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVAKAL 127 (170) Q Consensus 74 ~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIarAL 127 (170) ++++++..+..|.+|++-|.--+...-||. .|+||- +++.-|..||- T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~L-e~lk~AFeRa~ 50 (157) T 2aeu_A 4 DYEEFLRLEKARKIILEILNEKGRDALYDL------SGLSGL-ERIRKAFERAK 50 (157) T ss_dssp -----CCCCHHHHHHHHHHHHTCGGGCEEC------SSCCCH-HHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC------CCCCCH-HHHHHHHHHHH T ss_conf 589998789889999999866263135300------278888-99999999999 No 80 >>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} (A:1-98,A:222-313,A:422-478) Probab=21.37 E-value=54 Score=13.76 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=9.7 Q ss_pred EEEECCCCCHH--HHHHHHH Q ss_conf 99825983018--8899999 Q gi|254780293|r 105 ATVSGGGLSGQ--ASAICHG 122 (170) Q Consensus 105 ~~V~GGG~sgQ--a~Airla 122 (170) +.+.|-+..|- .++|+.| T Consensus 212 ~~~~G~~~~Gv~~~d~i~~~ 231 (247) T 2ivd_A 212 LHLIGNAYKGVGLNDCIRNA 231 (247) T ss_dssp EEECSTTTSCCSHHHHHHHH T ss_pred EEEECCCCCCCCHHHHHHHH T ss_conf 99986898998889999999 No 81 >>2qyg_A Ribulose bisphosphate carboxylase-like protein 2; beta-alpha-barrel, unknown function; 3.30A {Rhodopseudomonas palustris CGA009} (A:165-452) Probab=20.88 E-value=55 Score=13.70 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=24.0 Q ss_pred CEEEEEEEECCCCCHH-------HHHHHHHHHHHHHH--------HCHHHHHHHHHC Q ss_conf 4107999825983018-------88999999999976--------576344879977 Q gi|254780293|r 100 MYDVFATVSGGGLSGQ-------ASAICHGVAKALTY--------FQPDLRPQIKKG 141 (170) Q Consensus 100 ~~Di~~~V~GGG~sgQ-------a~AirlaIarAL~~--------~~p~~r~~Lk~~ 141 (170) +-|+.... |||+.|. +-|+|.||--++.- -.|+++..|.+- T Consensus 230 ~~Dvil~~-GGgi~gHPdG~~aGa~A~RqA~ea~~~g~~l~e~A~~~~eL~~Al~~w 285 (288) T 2qyg_A 230 SADFGFVP-GRGVFGHPMGPAAGATSIRQAWDAIAAGIPVPDHAASHPELAAALRAF 285 (288) T ss_dssp SSCCEECC-STTTTTCTTCHHHHHHHHHHHHHHHHTTCCHHHHHTTCHHHHHHHHHC T ss_pred CCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCHHHHHHHHHH T ss_conf 97789976-852355984578899999999999974997799851399999999984 No 82 >>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* (A:1-108,A:209-265,A:339-397) Probab=20.85 E-value=55 Score=13.70 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=14.4 Q ss_pred CCCEEEEEEEECCCCCHHHHHHHHHH Q ss_conf 66410799982598301888999999 Q gi|254780293|r 98 DNMYDVFATVSGGGLSGQASAICHGV 123 (170) Q Consensus 98 ~~~~Di~~~V~GGG~sgQa~AirlaI 123 (170) ...+||.| -|+|++|-+-|..++- T Consensus 27 ~~~~DVlI--VGAG~aGlsaA~~La~ 50 (224) T 3hdq_A 27 SKGFDYLI--VGAGFAGSVLAERLAS 50 (224) T ss_dssp CCCEEEEE--ECCSHHHHHHHHHHHH T ss_pred CCCCCEEE--ECCCHHHHHHHHHHHH T ss_conf 78899999--9972899999999996 No 83 >>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} (B:84-214,B:295-336) Probab=20.72 E-value=37 Score=14.73 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=12.1 Q ss_pred EEEECCCEEEEEEEECC Q ss_conf 13111210899999818 Q gi|254780293|r 48 ATGKRKTSIARVWIKSG 64 (170) Q Consensus 48 ~tGrRKtsvArV~l~~G 64 (170) +-||+.||.|.|++.|- T Consensus 109 ~~gR~hTStasV~VlP~ 125 (173) T 2b3t_B 109 SQGRIHTSACTVAVMPE 125 (173) T ss_dssp SSCCCEEEEEEEECCBC T ss_pred CCCCCCEEEEEEEECCC T ss_conf 34530202456621001 No 84 >>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} (A:1-222,A:312-440) Probab=20.46 E-value=56 Score=13.65 Aligned_cols=44 Identities=23% Similarity=0.096 Sum_probs=24.2 Q ss_pred CCCHHHHHHHHHHHHHHCCC---CCEEEEEEEECCCCCHHHHHHHHHHH Q ss_conf 46989999999999873856---64107999825983018889999999 Q gi|254780293|r 79 FTQDLLVLNIKRPFNTVSQD---NMYDVFATVSGGGLSGQASAICHGVA 124 (170) Q Consensus 79 f~~~~~r~~i~~Pl~~~~~~---~~~Di~~~V~GGG~sgQa~AirlaIa 124 (170) +++...+.-...+....+.. -.|||.| -|||++|-+=|+.|+-. T Consensus 25 ~~~~~~~~p~~~~~~~~~~~~~~~~~DViI--VGaGpaGL~lA~~L~~~ 71 (351) T 3fmw_A 25 LYDDDDKDPGRRMMHNSNADDAALTTDVVV--VGGGPVGLMLAGELRAG 71 (351) T ss_dssp --------------------------CEEE--ECCSHHHHHHHHHHHHT T ss_pred HCCCCCCHHHHHHCCCCCCCCCCCCCCEEE--ECCCHHHHHHHHHHHHC T ss_conf 016531026776403678888889878899--99199999999999978 No 85 >>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} (A:429-498) Probab=20.32 E-value=52 Score=13.83 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=26.6 Q ss_pred HHHHHHHHHHHHHCCC-------CCEEEEEEEECCCCCHHHHHHHHHHHHHHHH Q ss_conf 9999999999873856-------6410799982598301888999999999976 Q gi|254780293|r 83 LLVLNIKRPFNTVSQD-------NMYDVFATVSGGGLSGQASAICHGVAKALTY 129 (170) Q Consensus 83 ~~r~~i~~Pl~~~~~~-------~~~Di~~~V~GGG~sgQa~AirlaIarAL~~ 129 (170) ...+.+.+-+..++.. ..++..+.-.|..+| --+.=|++|||||+. T Consensus 17 ~~~e~i~~a~~~~~l~~~~~~~~~~~~~~~~~~g~~LS-gGQ~QrialARAl~~ 69 (70) T 3b60_A 17 YSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS-GGQRQRIAIARALLR 69 (70) T ss_dssp CCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC-HHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC-HHHHHHHHHHHHHHH T ss_conf 23999999999939856686076876776468999889-999999999999960 Done!