HHsearch results for GI: 254780293 and protein with PDBid: 2zkq_i
>2zkq_i 40S ribosomal protein S16E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=0 Score=315.91 Aligned_cols=125 Identities=28% Similarity=0.352 Sum_probs=114.0
Q ss_pred CCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCC--CCCEEEEEEEECCCCCHHHHHHHHH
Q ss_conf 50013111210899999818973999410088844698999999999987385--6641079998259830188899999
Q gi|254780293|r 45 RSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQ--DNMYDVFATVSGGGLSGQASAICHG 122 (170)
Q Consensus 45 ~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~--~~~~Di~~~V~GGG~sgQa~Airla 122 (170)
..+++||||||+|+|||.+|+|+|+|||+|+++||++ .+++.+++||.+++. .++|||+|+|+|||+||||+|||||
T Consensus 9 ~v~~~GrRKtaiArv~l~~G~G~i~INgk~~~~yf~~-~~~~~i~~pl~l~~~~~~~~~Di~~~V~GGG~sgQA~AiRla 87 (146)
T 2zkq_i 9 SVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPR-TLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQS 87 (146)
T ss_dssp CEEECCBCSSCEEEEEEEESSSCEEETTEEHHHHSTT-SCCGGGGHHHHHTSSCTTSSEEEEEEEESSCHHHHHHHHHHH
T ss_pred EEEEECCCEEEEEEEEEEECCCCEEECCCCHHHCCCH-HHHHHHHCCHHHCCCCCCCCCCEEEEEECCCHHHHHHHHHHH
T ss_conf 8899674603899999992766589879458990659-889887165321462012565459999578600887199999
Q ss_pred HHHHHHHHCHHH-----HHHHHH------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 999997657634-----487997------798335755416759528984335430579
Q gi|254780293|r 123 VAKALTYFQPDL-----RPQIKK------GGFLTRDSRIVERKKYGKAKARRSFQFSKR 170 (170)
Q Consensus 123 IarAL~~~~p~~-----r~~Lk~------~glLt~D~R~~ErKK~G~~kARk~~q~skR 170 (170)
|||||+.|+|++ ++.|++ .||||+|||++||||||++||||+||||||
T Consensus 88 IARAL~~~~~~~~~~~~k~~Lk~~~~~~d~glLtrD~R~~ERKK~G~~kARk~~Q~SkR 146 (146)
T 2zkq_i 88 ISKALVAYYQKYVDEASKKEIKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR 146 (146)
T ss_dssp HHHHHHHHCTTCTTSSSCCCCCSCSSSCCCCCC-CCCCCCCCCCTTSTTSSCCCCCSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99999986102047656498999886554875566841005586898656647476679