HHSEARCH alignment of GI: 254780293 and SCOP domain: d2vqei1

Alignment
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=100.00  E-value=0  Score=339.95  Aligned_cols=126  Identities=48%  Similarity=0.786  Sum_probs=123.9

Q ss_pred             CCEEEEECCCEEEEEEEECCCCEEEEECCCHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
Q ss_conf             50013111210899999818973999410088844698999999999987385664107999825983018889999999
Q gi|254780293|r   45 RSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHGVA  124 (170)
Q Consensus        45 ~~~~tGrRKtsvArV~l~~GsG~I~INgk~~~~Yf~~~~~r~~i~~Pl~~~~~~~~~Di~~~V~GGG~sgQa~AirlaIa  124 (170)
                      ..|||||||||+|+|||++|+|+|+|||+|+++||+++.+++.+++||.++++.++|||+|+|+|||+||||+|||||||
T Consensus         2 ~~y~~GrRKtaiArv~l~~G~G~I~IN~~~~~~yf~~~~~~~~~~~Pl~~~~~~~~~Di~~~V~GGG~~gQa~Air~aIa   81 (127)
T d2vqei1           2 QYYGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYITVRGGGKSGQIDAIKLGIA   81 (127)
T ss_dssp             CEEECCEETTEEEEEEEEESSCCEEESSSBHHHHSSSCSSGGGGGHHHHHHTCSTTEEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CCEEECCCCCEEEEEEEECCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHHHHHHHHHHHH
T ss_conf             13733546058999999838844998041376654177899999755442133663368998725970678889999999


Q ss_pred             HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             9997657634487997798335755416759528984335430579
Q gi|254780293|r  125 KALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSKR  170 (170)
Q Consensus       125 rAL~~~~p~~r~~Lk~~glLt~D~R~~ErKK~G~~kARk~~q~skR  170 (170)
                      |||+.++|++++.|++.||||+|+|++||||||++||||+||||||
T Consensus        82 RaL~~~~~~~r~~lk~~glLt~D~R~~ErKK~G~~kARk~~Q~skR  127 (127)
T d2vqei1          82 RALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQYSKR  127 (127)
T ss_dssp             HHHHHHCGGGHHHHTTTTTTSCBCCCCCCCCSSSSBTTBCCCCCCC
T ss_pred             HHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             9999979786899987788414520033467776565515254579


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: Translational machinery components
domain: Ribosomal protein S9
species: Thermus thermophilus [TaxId: 274]