RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9
[Candidatus Liberibacter asiaticus str. psy62]
(170 letters)
>gnl|CDD|144099 pfam00380, Ribosomal_S9, Ribosomal protein S9/S16. This family
includes small ribosomal subunit S9 from prokaryotes and
S16 from eukaryotes.
Length = 121
Score = 187 bits (477), Expect = 2e-48
Identities = 62/121 (51%), Positives = 80/121 (66%)
Query: 50 GKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFATVSG 109
G+RKT++ARVW+K GSGK TIN + +YF + L + I P +D+ TV G
Sbjct: 1 GRRKTAVARVWLKPGSGKITINGKPLEEYFPNETLRMKILEPLELTGTLGKFDIVVTVKG 60
Query: 110 GGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQFSK 169
GG+SGQA AI +A+AL + P+LRP++KK G LTRD R ERKKYG KAR+ QFSK
Sbjct: 61 GGISGQAGAIRLAIARALVAYDPELRPELKKAGLLTRDPRRKERKKYGLKKARKRPQFSK 120
Query: 170 R 170
R
Sbjct: 121 R 121
>gnl|CDD|30452 COG0103, RpsI, Ribosomal protein S9 [Translation, ribosomal
structure and biogenesis].
Length = 130
Score = 164 bits (416), Expect = 2e-41
Identities = 64/129 (49%), Positives = 83/129 (64%)
Query: 42 QWQRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMY 101
+ Y TGKRK+++ARV + G GK T+N + YF ++ L + I +P +
Sbjct: 2 MEDQVYTTGKRKSAVARVRLVPGKGKITVNGRPLELYFPRETLRMKIMQPLLLTGTVGKF 61
Query: 102 DVFATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKA 161
D+ TV GGG+SGQA AI HG+A+AL + P+LRP +KK G LTRD R VERKKYG KA
Sbjct: 62 DIDVTVKGGGISGQAGAIRHGIARALVEYDPELRPALKKAGLLTRDPRRVERKKYGLKKA 121
Query: 162 RRSFQFSKR 170
RR QFSKR
Sbjct: 122 RRRPQFSKR 130
>gnl|CDD|177018 CHL00079, rps9, ribosomal protein S9.
Length = 130
Score = 155 bits (394), Expect = 6e-39
Identities = 61/128 (47%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLN-IKRPFNTVSQDNMYD 102
TG+RKT++A+V + GSG+ IN +Y + LN IK P + +N YD
Sbjct: 3 ILYIGTGRRKTAVAQVRLVPGSGEIIINGKPAEEYLQYNPNYLNAIKAPLKLLGLENKYD 62
Query: 103 VFATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKAR 162
+ V GGGL+GQA AI G+A+AL P+ R +KK GFLTRD+RI ERKKYG KAR
Sbjct: 63 IIVKVKGGGLTGQAEAIRLGLARALCKINPENRKSLKKEGFLTRDARIKERKKYGLKKAR 122
Query: 163 RSFQFSKR 170
++ QFSKR
Sbjct: 123 KAPQFSKR 130
>gnl|CDD|36910 KOG1697, KOG1697, KOG1697, Mitochondrial/chloroplast ribosomal
protein S9 [Translation, ribosomal structure and
biogenesis].
Length = 275
Score = 144 bits (364), Expect = 1e-35
Identities = 58/127 (45%), Positives = 74/127 (58%)
Query: 44 QRSYATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDV 103
R A G+RK + A V ++ G+GKF +N D+ YF + P YDV
Sbjct: 149 VRIIAVGRRKCARATVKVQPGTGKFDVNGRDLDVYFQHLQHREQLLYPLAVSESLGKYDV 208
Query: 104 FATVSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARR 163
ATVSGGG SGQA AI G+AKAL F+PDL ++ G LTRD R+VERKK G+ KAR+
Sbjct: 209 TATVSGGGPSGQAGAIRLGIAKALASFEPDLIEPLRLAGLLTRDPRVVERKKPGQPKARK 268
Query: 164 SFQFSKR 170
+ KR
Sbjct: 269 KPTWKKR 275
>gnl|CDD|36964 KOG1753, KOG1753, KOG1753, 40S ribosomal protein S16 [Translation,
ribosomal structure and biogenesis].
Length = 145
Score = 45.3 bits (107), Expect = 8e-06
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 14/134 (10%)
Query: 50 GKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDV--FATV 107
G++KT+ A K GSG +N + + ++L + P + ++ V V
Sbjct: 13 GRKKTATAVAHCKHGSGLIKVNGRPL-ELIEPEILRYKLLEPVLLLGKERFAGVDIRVRV 71
Query: 108 SGGGLSGQASAICHGVAKAL-----TYFQPDLRPQIKK------GGFLTRDSRIVERKKY 156
GGG Q AI +AKAL Y + +IK L D R E KK+
Sbjct: 72 KGGGHVSQIYAIRQAIAKALVAYYQKYVDEQSKKEIKDILIQYDRTLLVADPRRCESKKF 131
Query: 157 GKAKARRSFQFSKR 170
G AR +Q S R
Sbjct: 132 GGPGARARYQKSYR 145
>gnl|CDD|146870 pfam04441, Pox_VERT_large, Poxvirus early transcription factor
(VETF), large subunit. The poxvirus early transcription
factor (VETF), in addition to the viral RNA polymerase,
is required for efficient transcription of early genes
in vitro. VETF is a heterodimeric protein that binds
specifically to early gene promoters. The heterodimer is
comprised of an 82 kDa (this family) subunit and a 70
kDa subunit.
Length = 700
Score = 28.5 bits (64), Expect = 0.86
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 71 NY-VDISKYFTQDLLVLNIKRPFNTVSQ 97
N +I KYFT L++ I FN V Q
Sbjct: 326 NIIPNIEKYFT--FLIIAINHMFNKVQQ 351
>gnl|CDD|146468 pfam03850, Tfb4, Transcription factor Tfb4.
Length = 271
Score = 28.4 bits (64), Expect = 0.97
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 63 SGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQ---DNMYDVFATVSGGGLSGQASAI 119
S G ++ V +KY R F V + + + + ++ S ++ + S +
Sbjct: 68 SNDGDVEMSGVGDNKY-----------RQFRNVEETVLEELRKLLSSTSKAEVATETSTL 116
Query: 120 CHGVAKALTYFQPDLRPQIKKGGFLTRDSRIV 151
++ AL Y + + G + SRI+
Sbjct: 117 AGALSLALCYINRVST--LDEAGSTSLKSRIL 146
>gnl|CDD|40043 KOG4846, KOG4846, KOG4846, Nuclear receptor [Signal transduction
mechanisms].
Length = 538
Score = 27.0 bits (59), Expect = 2.4
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 113 SGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVE 152
+G A A H TY +R G + R R+++
Sbjct: 322 NGNAKASLHRKNAFPTYLLRIVRGMSPNRGLMLRSGRLIQ 361
>gnl|CDD|37975 KOG2764, KOG2764, KOG2764, Putative transcriptional regulator DJ-1
[General function prediction only, Defense mechanisms].
Length = 247
Score = 26.4 bits (58), Expect = 4.1
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 13/55 (23%)
Query: 107 VSGGGLSGQASAICHGVAKALTYF----------QPDLRPQIKKGGFLTRDSRIV 151
G L AIC AL P ++P++++GG+ + R+V
Sbjct: 97 AESGKLIA---AICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVV 148
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions..
Length = 304
Score = 26.3 bits (59), Expect = 4.6
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 13/38 (34%)
Query: 103 VFATVSGGGL-SGQASAICHGVAKALTYFQPDLRPQIK 139
VF V GGGL +G A+A+ KA L P K
Sbjct: 169 VFVPVGGGGLIAGIATAV-----KA-------LSPNTK 194
>gnl|CDD|35797 KOG0577, KOG0577, KOG0577, Serine/threonine protein kinase [Signal
transduction mechanisms].
Length = 948
Score = 25.4 bits (55), Expect = 7.3
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 117 SAICHGVAKALTYFQPDLRPQ--IKKGGFLTRDSRIVERKKYGKA 159
+AI HG + L Y R IK G L + +V+ +G A
Sbjct: 129 AAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSA 173
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 25.5 bits (56), Expect = 8.0
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 117 SAICHGVAKALTYFQPDLRPQ--IKKGGFLTRDSRIVERKKYGKA 159
+AICHG + L Y R IK G L + V+ +G A
Sbjct: 118 AAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSA 162
>gnl|CDD|32576 COG2502, AsnA, Asparagine synthetase A [Amino acid transport and
metabolism].
Length = 330
Score = 25.3 bits (55), Expect = 8.4
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 11 IEQQGGTLTEENTSQPEETSSSPAIHSRKVDQW 43
G T +P+E P IHS VDQW
Sbjct: 86 FSAGEGLYTHMKALRPDEDRLDP-IHSVYVDQW 117
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.316 0.131 0.374
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,956,570
Number of extensions: 92334
Number of successful extensions: 226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 14
Length of query: 170
Length of database: 6,263,737
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,383,754
Effective search space: 363851582
Effective search space used: 363851582
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.7 bits)