RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780293|ref|YP_003064706.1| 30S ribosomal protein S9 [Candidatus Liberibacter asiaticus str. psy62] (170 letters) >d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]} Length = 126 Score = 156 bits (396), Expect = 1e-39 Identities = 60/124 (48%), Positives = 83/124 (66%) Query: 47 YATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFAT 106 Y TG+RK+S ARV+IK G+GK IN + +YF ++ + +++P V D++ T Sbjct: 3 YGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETARMVVRQPLELVDMVEKLDLYIT 62 Query: 107 VSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQ 166 V GGG+SGQA AI HG+ +AL + LR +++K GF+TRD+R VERKK G KARR Q Sbjct: 63 VKGGGISGQAGAIRHGITRALMEYDESLRSELRKAGFVTRDARQVERKKVGLRKARRRPQ 122 Query: 167 FSKR 170 FSKR Sbjct: 123 FSKR 126 >d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]} Length = 127 Score = 153 bits (387), Expect = 9e-39 Identities = 60/124 (48%), Positives = 83/124 (66%) Query: 47 YATGKRKTSIARVWIKSGSGKFTINYVDISKYFTQDLLVLNIKRPFNTVSQDNMYDVFAT 106 Y TG+RK ++ARV+++ G+GK T+N D ++YF + + P V +D + T Sbjct: 4 YGTGRRKEAVARVFLRPGNGKVTVNGQDFNEYFQGLVRAVAALEPLRAVDALGRFDAYIT 63 Query: 107 VSGGGLSGQASAICHGVAKALTYFQPDLRPQIKKGGFLTRDSRIVERKKYGKAKARRSFQ 166 V GGG SGQ AI G+A+AL + PD R ++K GFLTRD+R+VERKKYGK KARR+ Q Sbjct: 64 VRGGGKSGQIDAIKLGIARALVQYNPDYRAKLKPLGFLTRDARVVERKKYGKHKARRAPQ 123 Query: 167 FSKR 170 +SKR Sbjct: 124 YSKR 127 >d1thga_ c.69.1.17 (A:) Type-B carboxylesterase/lipase {Fungus (Geotrichum candidum), ATCC 34614 [TaxId: 27317]} Length = 544 Score = 25.1 bits (53), Expect = 3.5 Identities = 14/41 (34%), Positives = 17/41 (41%), Gaps = 1/41 (2%) Query: 82 DLLVLNIKRPFNTVSQDNMYDVFATVSGGGLSGQASAICHG 122 D L LN+ RP T D V + GG +SA G Sbjct: 104 DCLYLNVFRPAGT-KPDAKLPVMVWIYGGAFVYGSSAAYPG 143 >d1vpka1 d.131.1.1 (A:1-120) DNA polymerase III, beta subunit {Thermotoga maritima [TaxId: 2336]} Length = 120 Score = 24.6 bits (53), Expect = 4.3 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 58 RVWIKSGSGKFTINYVDISKY 78 + I SGS F I + ++ Sbjct: 95 ALVISSGSTVFRITTMPADEF 115 >d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Score = 24.3 bits (52), Expect = 5.1 Identities = 7/43 (16%), Positives = 18/43 (41%) Query: 11 IEQQGGTLTEENTSQPEETSSSPAIHSRKVDQWQRSYATGKRK 53 + ++ TL EEN + + + + + +S+ + K Sbjct: 1 LNKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHK 43 >d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]} Length = 122 Score = 24.1 bits (52), Expect = 5.9 Identities = 4/21 (19%), Positives = 14/21 (66%) Query: 58 RVWIKSGSGKFTINYVDISKY 78 R+ ++SG +F+++ + + + Sbjct: 96 RMLVRSGRSRFSLSTLPAADF 116 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.316 0.131 0.374 Gapped Lambda K H 0.267 0.0580 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 613,592 Number of extensions: 26556 Number of successful extensions: 73 Number of sequences better than 10.0: 1 Number of HSP's gapped: 73 Number of HSP's successfully gapped: 8 Length of query: 170 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 91 Effective length of database: 1,322,926 Effective search space: 120386266 Effective search space used: 120386266 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.4 bits)