HHsearch alignment for GI: 254780294 and conserved domain: COG0002

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism].
Probab=100.00  E-value=0  Score=522.15  Aligned_cols=292  Identities=34%  Similarity=0.524  Sum_probs=263.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH--------------------HCCCCEEEECCCCH
Q ss_conf             9079997588678999999986299728999965300786006677--------------------47998999938983
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL--------------------LNAADVSILCLPDV   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~--------------------~~~~Divf~a~p~~   60 (311)
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg   81 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG   81 (349)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCH
T ss_conf             81599977887748999999865997379996316645870687582423534554335774553015688899906863


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHH-------------------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             7899999986125848982276303555-------------------431100210004776520496077258421133
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTAHRIA-------------------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~-------------------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
T Consensus        82 ~s~~~v~~l~~~g--~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~---e~i~~A~lIAnPGCypTa  156 (349)
T COG0002          82 VSAELVPELLEAG--CKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR---EKIRGAKLIANPGCYPTA  156 (349)
T ss_pred             HHHHHHHHHHHCC--CEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCH---HHHHCCCEEECCCCHHHH
T ss_conf             6889899997479--94998873200577777788627777780133154334731298---888338773679832889


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC----EE
Q ss_conf             11247888885034556502676512333356100000013444322343322222344444342013321671----13
Q gi|254780294|r  122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIK----TS  197 (311)
Q Consensus       122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~----~~  197 (311)
T Consensus       157 ~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~----~~~~~~Y~~~-~HrH~pEi~q~l~~l~~~~~~  231 (349)
T COG0002         157 AILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEV----NDSLRPYGLT-GHRHTPEIEQHLGRLAGRKVP  231 (349)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHH----CCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCC
T ss_conf             99988899876997888864899767467678785300255110----3663335445-667659999986010167676


Q ss_pred             EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEE
Q ss_conf             68875203433202789999863257754489988665422001443056027878878986427627996079999980
Q gi|254780294|r  198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDS  277 (311)
Q Consensus       198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~  277 (311)
T Consensus       232 v~FtPhl~p~~RGIl~Ti~~~l~~---~~t~~~i~~~y~~~Y~~epfVrv~~~~-----~~P~~k~V~GsN~cdIgf~~d  303 (349)
T COG0002         232 VIFTPHLGPFVRGILATIYLKLKD---LVTLEELHAAYEEFYAGEPFVRVVPEG-----GYPDTKAVAGSNFCDIGFAVD  303 (349)
T ss_pred             EEEECEECCCCCEEEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCCC-----CCCCHHHHCCCCCEEEEEEEC
T ss_conf             178520666125089998874188---889999999999986799869970688-----999745515886328988875


Q ss_pred             CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             899769999972221013689999999987238
Q gi|254780294|r  278 SELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       278 ~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
T Consensus       304 ~~~~rvvvvsaIDNL~KGAAGQAVQnmNim~G~  336 (349)
T COG0002         304 ERTGRVVVVSAIDNLVKGAAGQAVQNMNIMFGF  336 (349)
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             878889999970100234788999999987298