HHsearch alignment for GI: 254780294 and conserved domain: PRK02006
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=94.00 E-value=0.45 Score=25.84 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=56.1
Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------C-------CCCCHHHHCCCCEEEECCCC----H
Q ss_conf 90799975886789999999862997289999653007---------8-------60066774799899993898----3
Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------N-------LRYREDLLNAADVSILCLPD----V 60 (311)
Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g-------~~~~~~~~~~~Divf~a~p~----~ 60 (311)
T Consensus 7 ~k~vlV~Gl-G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p 84 (501)
T PRK02006 7 RPMVLVLGL-GESGLAMARWCARH-GCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP 84 (501)
T ss_pred CCEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC
T ss_conf 983999833-68899999999978-9849999899998619999860898189778898678468999998990088885
Q ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCHHHHH
Q ss_conf 7899999986125848982-2763035554
Q gi|254780294|r 61 ASLEIIQLIKKNGINSRII-DTSTAHRIAP 89 (311)
Q Consensus 61 ~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~ 89 (311)
T Consensus 85 ~~~~~l~~A~~~gi~--i~~eiel~~~~~~ 112 (501)
T PRK02006 85 ALAALLAAARERGIP--VWGELELFAQALA 112 (501)
T ss_pred CHHHHHHHHHHCCCC--EEEHHHHHHHHHH
T ss_conf 431999999987995--8768999998876