HHsearch alignment for GI: 254780294 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=90.26 E-value=1.3 Score=22.97 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=51.3
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf 0799975886789999999862997289999653007--------860-----066774799899993898378999999
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLR-----YREDLLNAADVSILCLPDVASLEIIQL 68 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311)
T Consensus 7 k~v~V~Gl-G~sG~s~~~~L~~~-G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~~~~ 84 (438)
T PRK03806 7 KNVVIIGL-GLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSA 84 (438)
T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf 98999945-78889999999978-99699998999900578864588466577796680679999989978998989999
Q ss_pred HHHCCCC
Q ss_conf 8612584
Q gi|254780294|r 69 IKKNGIN 75 (311)
Q Consensus 69 ~~~~g~~ 75 (311)
T Consensus 85 a~~~~i~ 91 (438)
T PRK03806 85 AADAGVE 91 (438)
T ss_pred HHHCCCC
T ss_conf 9987994