HHsearch alignment for GI: 254780294 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.16 E-value=0.0073 Score=36.96 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=58.9
Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCH------------------------HHHCCC------
Q ss_conf 79997588678999999986299728999965300--7860066------------------------774799------
Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYRE------------------------DLLNAA------ 50 (311)
Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~~------------------------~~~~~~------ 50 (311)
T Consensus 1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE~~ 79 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSK-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAESD 79 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCCCC
T ss_conf 978873875679999997078-8827864368777611336544062246889999985287537623011010000377
Q ss_pred -CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf -899993898378999999861258489822763035554
Q gi|254780294|r 51 -DVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAP 89 (311)
Q Consensus 51 -Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~ 89 (311)
T Consensus 80 ~~~A-yavNa~A~~~lA~~A~~~G--a~~vh~STDYVFDG 116 (317)
T TIGR01214 80 PEKA-YAVNALAPQNLARAAARVG--ARLVHISTDYVFDG 116 (317)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHCC--CEEEEEEECEEECC
T ss_conf 7787-6574078999999998669--15999863423447