HHsearch alignment for GI: 254780294 and conserved domain: TIGR01534
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=98.43 E-value=5.1e-06 Score=56.46 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=132.4
Q ss_pred CCCCEEEECCCCHHHHHH--HHHHHHCC---CCEEEECCCCCH-HHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf 799899993898378999--99986125---848982276303-555431100210004776520496077258421133
Q gi|254780294|r 48 NAADVSILCLPDVASLEI--IQLIKKNG---INSRIIDTSTAH-RIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311)
Q Consensus 48 ~~~Divf~a~p~~~s~~~--~~~~~~~g---~~~~vid~ss~~-R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311)
T Consensus 107 ~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlis--AP~k~~~~~~~t~V~GVN~~~y~~~~~~~iiSnASCTTNc 184 (366)
T TIGR01534 107 LGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLIS--APFKSKGDAAPTIVYGVNHDEYDDPAEERIISNASCTTNC 184 (366)
T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCEEEEEECCCHHHHCCCCCCEEEECCCCHHHH
T ss_conf 07328995887502762568989863679941268983--6888888960278866774560478886089825551357
Q ss_pred CHHHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCHHCC--CC-CCCCCCCCCCCCCCCCC---CCCCCCCHHHHC
Q ss_conf 112478888---8503455650267651233335610000001--34-44322343322222344---444342013321
Q gi|254780294|r 122 AIAILRPLR---KAKLLPDRYPITINAVSGYTGGGKKLISRME--QK-NMPDTISSNHFFYSLDL---LHKHLPEITQYS 192 (311)
Q Consensus 122 ~~laL~PL~---~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~h~~e~~~~~ 192 (311)
T Consensus 185 lAP~~kvL~~hfe~FGI~~G~MTTvHsyT~d----Q~l~D~~~~~~D~Rr~RAAa~NiIPtsTGAAkA~~~VlP~L---- 256 (366)
T TIGR01534 185 LAPLAKVLDEHFEEFGIVSGLMTTVHSYTND----QNLVDGPHRHKDLRRARAAALNIIPTSTGAAKAIGKVLPEL---- 256 (366)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEECCC----CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----
T ss_conf 8999999987651043010169999865087----10420776888752013000266300346888998743577----
Q ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CCEEECCCC
Q ss_conf 671136887520343320278999986325775448998866542200144--305602787
Q gi|254780294|r 193 LIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQN--IVSVVPLEE 252 (311)
Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~~ 252 (311)
T Consensus 257 --~GKL~G~A~RVPt~~vS~vdL~~~---l~k~~~~~~vnaA~k~a~~~~~~~l~g~lgy~~ 313 (366)
T TIGR01534 257 --AGKLTGMAIRVPTPNVSLVDLVVN---LEKKVTKEEVNAALKEAAEGSTYLLKGVLGYTE 313 (366)
T ss_pred --CCCEEEEEEEEECCCCEEEEEEEE---CCCCCCHHHHHHHHHHHHCCCCEEECCCEEEEC
T ss_conf --764017899765389529999973---378778899999999984898374446100321