HHsearch alignment for GI: 254780294 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.95 E-value=0.0071 Score=37.04 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=36.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCC------------CHHHHCCCCEEEECCC
Q ss_conf 0799975886789999999862997289999653007-----8600------------6677479989999389
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRY------------REDLLNAADVSILCLP 58 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~------------~~~~~~~~Divf~a~p 58 (311)
T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERG-EEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAA 73 (328)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf 949998677799999999999784-9899998999865565217977998207999999999717858976134