HHsearch alignment for GI: 254780294 and conserved domain: cd05294
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.35 E-value=0.0031 Score=39.27 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=41.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC----CCCCC-------------------CHHHHCCCCEEEECC
Q ss_conf 079997588678999999986299-728999965300----78600-------------------667747998999938
Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER----HNLRY-------------------REDLLNAADVSILCL 57 (311)
Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~----ag~~~-------------------~~~~~~~~Divf~a~ 57 (311)
T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVitA 80 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECC
T ss_conf 98999999976999999999837998759996055643423112355450343368876798279889968999999878
Q ss_pred CC
Q ss_conf 98
Q gi|254780294|r 58 PD 59 (311)
Q Consensus 58 p~ 59 (311)
T Consensus 81 G~ 82 (309)
T cd05294 81 GV 82 (309)
T ss_pred CC
T ss_conf 98