Query         gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 311
No_of_seqs    123 out of 3406
Neff          8.6 
Searched_HMMs 39220
Date          Tue May 24 17:23:51 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780294.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 TIGR01850 argC N-acetyl-gamma- 100.0       0       0  601.5  24.0  294    2-310     1-348 (361)
  2 PRK11863 N-acetyl-gamma-glutam 100.0       0       0  562.3  24.8  307    1-310     2-308 (314)
  3 PRK00436 argC N-acetyl-gamma-g 100.0       0       0  554.3  26.1  291    1-310     1-332 (345)
  4 COG0002 ArgC Acetylglutamate s 100.0       0       0  522.2  24.7  292    1-310     2-336 (349)
  5 PRK06598 aspartate-semialdehyd 100.0       0       0  504.6  24.1  295    1-309     2-347 (348)
  6 TIGR01296 asd_B aspartate-semi 100.0       0       0  512.5  15.3  292    3-308     1-348 (350)
  7 PRK08664 aspartate-semialdehyd 100.0       0       0  495.0  25.6  288    1-309     3-345 (350)
  8 PRK06728 aspartate-semialdehyd 100.0       0       0  480.6  22.7  292    2-309     6-343 (347)
  9 PRK05671 aspartate-semialdehyd 100.0       0       0  472.6  24.6  290    2-309     5-333 (336)
 10 PRK08040 putative semialdehyde 100.0       0       0  465.6  24.4  290    2-309     5-333 (337)
 11 TIGR00978 asd_EA aspartate-sem 100.0       0       0  446.7  21.6  289    2-308     1-357 (358)
 12 COG0136 Asd Aspartate-semialde 100.0       0       0  441.3  22.0  294    1-308     1-334 (334)
 13 PRK06901 aspartate-semialdehyd 100.0       0       0  437.8  21.6  288    1-308     4-319 (323)
 14 TIGR01851 argC_other N-acetyl- 100.0       0       0  433.4  12.9  307    2-310     2-314 (314)
 15 KOG4354 consensus              100.0       0       0  389.9  17.0  286    2-310    20-327 (340)
 16 KOG4777 consensus              100.0       0       0  318.8  15.4  298    2-305     4-358 (361)
 17 pfam01118 Semialdhyde_dh Semia 100.0 1.4E-29 3.5E-34  202.4   8.8  101    3-105     1-120 (121)
 18 smart00859 Semialdhyde_dh Semi 100.0 1.6E-29 4.1E-34  201.9   8.1  100    3-104     1-121 (122)
 19 pfam02774 Semialdhyde_dhC Semi  99.9 1.3E-24 3.3E-29  171.6  11.4  153  126-294     1-167 (167)
 20 TIGR01745 asd_gamma aspartate-  99.8 1.8E-19 4.7E-24  139.7   5.7  295    2-305     1-364 (367)
 21 PTZ00023 glyceraldehyde-3-phos  99.4 1.4E-10 3.6E-15   84.7  21.1  281    1-307     2-333 (337)
 22 COG0057 GapA Glyceraldehyde-3-  99.4 7.5E-10 1.9E-14   80.2  20.2  275    1-303     1-326 (335)
 23 PRK07403 glyceraldehyde-3-phos  99.3 1.5E-09 3.8E-14   78.4  20.5  283    1-307     1-332 (337)
 24 PRK08955 glyceraldehyde-3-phos  99.3 1.1E-09 2.9E-14   79.1  19.6  282    1-306     2-329 (333)
 25 PRK13535 erythrose 4-phosphate  99.2 2.6E-08 6.6E-13   70.7  19.8  281    2-307     2-332 (336)
 26 PRK07729 glyceraldehyde-3-phos  99.2   3E-08 7.7E-13   70.3  19.8  282    1-307     2-330 (343)
 27 PRK04207 glyceraldehyde-3-phos  99.1 1.8E-08 4.6E-13   71.6  15.9  213    1-238     2-245 (338)
 28 PRK08289 glyceraldehyde-3-phos  98.9 1.3E-06 3.3E-11   60.2  19.8  276   10-310   137-473 (479)
 29 TIGR01532 E4PD_g-proteo D-eryt  98.8 1.6E-07 4.1E-12   65.8  12.1  270    3-296     1-328 (334)
 30 PRK08300 acetaldehyde dehydrog  98.7 1.5E-07 3.9E-12   65.9  10.1  119    2-127     5-142 (298)
 31 TIGR03215 ac_ald_DH_ac acetald  98.6 1.3E-06 3.3E-11   60.1  11.2  119    2-127     2-136 (285)
 32 TIGR01534 GAPDH-I glyceraldehy  98.4 5.1E-06 1.3E-10   56.5  11.1  190   48-252   107-313 (366)
 33 PRK13303 L-aspartate dehydroge  98.1 2.5E-05 6.3E-10   52.2   9.2   82    1-83      1-95  (265)
 34 COG1748 LYS9 Saccharopine dehy  98.1 0.00014 3.5E-09   47.6  12.1  107    1-121     1-127 (389)
 35 PTZ00325 malate dehydrogenase;  98.1 4.9E-05 1.3E-09   50.4   9.5   40    1-40      1-41  (313)
 36 pfam03435 Saccharop_dh Sacchar  98.0 4.3E-05 1.1E-09   50.7   8.9  106    4-123     1-128 (384)
 37 PRK13304 L-aspartate dehydroge  98.0 4.3E-05 1.1E-09   50.7   8.6   82    1-83      1-95  (265)
 38 COG4569 MhpF Acetaldehyde dehy  98.0 4.2E-05 1.1E-09   50.8   7.9  121    2-129     5-145 (310)
 39 KOG4039 consensus               98.0 6.8E-05 1.7E-09   49.5   8.9   78    1-78     18-127 (238)
 40 PRK00048 dihydrodipicolinate r  97.8 0.00024 6.1E-09   46.1   9.7  109    1-120     2-129 (265)
 41 pfam05368 NmrA NmrA-like famil  97.8 0.00038 9.6E-09   44.9  10.4   74    4-78      1-99  (232)
 42 CHL00194 ycf39 Ycf39; Provisio  97.8  0.0003 7.7E-09   45.5   9.2  116    2-120     1-149 (319)
 43 PRK08655 prephenate dehydrogen  97.7 0.00028 7.1E-09   45.7   8.3  114    2-117     1-137 (441)
 44 PRK05447 1-deoxy-D-xylulose 5-  97.6 0.00024 6.2E-09   46.1   7.2   39    1-39      1-40  (379)
 45 PRK13302 putative L-aspartate   97.6 0.00089 2.3E-08   42.6  10.0   81    2-83      7-101 (271)
 46 PRK08507 prephenate dehydrogen  97.6 0.00054 1.4E-08   43.9   8.6   84    2-86      1-95  (275)
 47 TIGR01921 DAP-DH diaminopimela  97.6   9E-05 2.3E-09   48.8   4.5  114    1-124     1-134 (326)
 48 pfam01113 DapB_N Dihydrodipico  97.6 0.00087 2.2E-08   42.7   9.4   80    2-82      1-97  (122)
 49 PRK11579 putative oxidoreducta  97.5   0.001 2.6E-08   42.3   8.9   78    2-81      5-95  (346)
 50 PRK13301 putative L-aspartate   97.5  0.0012 3.2E-08   41.7   9.1   82    1-83      2-96  (267)
 51 cd01337 MDH_glyoxysomal_mitoch  97.5  0.0017 4.3E-08   40.9   9.4   40    2-41      1-41  (310)
 52 COG0289 DapB Dihydrodipicolina  97.4  0.0016   4E-08   41.1   9.2  106    1-118     2-127 (266)
 53 COG1712 Predicted dinucleotide  97.4   0.001 2.6E-08   42.2   7.9  118    2-129     1-131 (255)
 54 PRK05086 malate dehydrogenase;  97.4  0.0022 5.5E-08   40.2   9.4   39    2-40      1-42  (312)
 55 cd05294 LDH-like_MDH_nadp A la  97.3  0.0031 7.8E-08   39.3   9.7   58    2-59      1-82  (309)
 56 pfam03446 NAD_binding_2 NAD bi  97.3  0.0006 1.5E-08   43.6   6.0   80    1-84      1-97  (163)
 57 PRK11880 pyrroline-5-carboxyla  97.3  0.0018 4.5E-08   40.8   8.2  151    1-156     2-176 (267)
 58 PRK00094 gpsA NAD(P)H-dependen  97.3  0.0016   4E-08   41.1   7.8  112    1-116     1-137 (325)
 59 PRK07502 cyclohexadienyl dehyd  97.3  0.0015 3.7E-08   41.3   7.2   85    1-86      6-104 (307)
 60 PRK10206 putative dehydrogenas  97.2  0.0031 7.9E-08   39.3   8.8   82    1-84      2-99  (345)
 61 pfam00056 Ldh_1_N lactate/mala  97.2  0.0041   1E-07   38.5   9.4   58    2-59      1-79  (142)
 62 pfam00044 Gp_dh_N Glyceraldehy  97.2  0.0024   6E-08   40.0   8.0  110    2-117     1-150 (150)
 63 COG0673 MviM Predicted dehydro  97.2  0.0045 1.1E-07   38.3   9.3  134    1-142     3-152 (342)
 64 PRK06545 prephenate dehydrogen  97.2  0.0019   5E-08   40.5   7.1   84    2-86      1-97  (357)
 65 pfam01408 GFO_IDH_MocA Oxidore  97.1  0.0027 6.8E-08   39.6   7.7   77    2-80      1-92  (120)
 66 PTZ00117 malate dehydrogenase;  97.1  0.0051 1.3E-07   37.9   9.1   58    1-59      1-79  (313)
 67 smart00846 Gp_dh_N Glyceraldeh  97.1  0.0063 1.6E-07   37.3   9.0  109    2-117     1-149 (149)
 68 PRK07417 arogenate dehydrogena  97.1  0.0043 1.1E-07   38.3   8.0   83    2-86      2-96  (280)
 69 PRK11199 tyrA bifunctional cho  97.1  0.0052 1.3E-07   37.9   8.4  115    2-121    99-222 (374)
 70 PRK06928 pyrroline-5-carboxyla  97.0  0.0018 4.5E-08   40.7   5.8  152    1-156     1-176 (275)
 71 COG2085 Predicted dinucleotide  97.0  0.0044 1.1E-07   38.3   7.7   95    1-97      1-110 (211)
 72 COG0287 TyrA Prephenate dehydr  97.0  0.0035 8.8E-08   39.0   7.2   85    1-86      3-102 (279)
 73 pfam02629 CoA_binding CoA bind  97.0  0.0063 1.6E-07   37.4   8.2   76    2-78      4-91  (96)
 74 pfam02670 DXP_reductoisom 1-de  97.0   0.003 7.7E-08   39.3   6.5   52    4-55      1-53  (129)
 75 TIGR03466 HpnA hopanoid-associ  97.0  0.0071 1.8E-07   37.0   8.3   56    2-58      1-73  (328)
 76 cd00704 MDH Malate dehydrogena  96.9  0.0031 7.9E-08   39.3   6.1   57    2-58      1-85  (323)
 77 TIGR03649 ergot_EASG ergot alk  96.9   0.011 2.7E-07   36.0   8.8   78    4-83      2-105 (285)
 78 COG0345 ProC Pyrroline-5-carbo  96.9  0.0046 1.2E-07   38.2   6.8  154    1-157     1-176 (266)
 79 pfam01210 NAD_Gly3P_dh_N NAD-d  96.9    0.01 2.6E-07   36.0   8.5   94    2-99      1-119 (159)
 80 cd01338 MDH_choloroplast_like   96.9  0.0047 1.2E-07   38.1   6.8   56    2-57      3-86  (322)
 81 PRK11908 NAD-dependent epimera  96.8  0.0041 1.1E-07   38.5   6.2   34    1-34      1-34  (347)
 82 COG2910 Putative NADH-flavin r  96.8  0.0089 2.3E-07   36.4   7.8  100    2-102     1-127 (211)
 83 pfam01488 Shikimate_DH Shikima  96.8  0.0032 8.2E-08   39.2   5.4   87    2-92     13-118 (134)
 84 COG2344 AT-rich DNA-binding pr  96.8  0.0067 1.7E-07   37.2   6.9   74    1-75     84-172 (211)
 85 PRK06153 hypothetical protein;  96.7  0.0022 5.5E-08   40.2   4.3   10   50-59    100-109 (393)
 86 pfam03807 F420_oxidored NADP o  96.7  0.0044 1.1E-07   38.3   5.9   78    3-82      1-91  (93)
 87 cd05291 HicDH_like L-2-hydroxy  96.7   0.021 5.4E-07   34.1   9.3   56    2-58      1-77  (306)
 88 cd05292 LDH_2 A subgroup of L-  96.7   0.025 6.4E-07   33.6   9.6   56    2-58      1-76  (308)
 89 cd00650 LDH_MDH_like NAD-depen  96.7   0.017 4.5E-07   34.6   8.6   56    4-59      1-80  (263)
 90 PRK07679 pyrroline-5-carboxyla  96.6   0.014 3.7E-07   35.1   8.0  152    1-156     3-180 (279)
 91 cd05213 NAD_bind_Glutamyl_tRNA  96.6  0.0089 2.3E-07   36.4   6.7   11   16-26     28-38  (311)
 92 cd01336 MDH_cytoplasmic_cytoso  96.6  0.0091 2.3E-07   36.3   6.7   57    2-58      3-87  (325)
 93 COG1091 RfbD dTDP-4-dehydrorha  96.5   0.011 2.7E-07   35.9   6.8   85    1-90      1-107 (281)
 94 PRK07634 pyrroline-5-carboxyla  96.5   0.016   4E-07   34.9   7.5  150    2-156     5-180 (245)
 95 COG0136 Asd Aspartate-semialde  96.5   0.002   5E-08   40.5   2.8   31  206-236   227-257 (334)
 96 PRK05472 redox-sensing transcr  96.5   0.019 4.9E-07   34.4   7.8   84    1-87     84-182 (211)
 97 KOG1502 consensus               96.5   0.014 3.7E-07   35.1   7.0   57    1-57      6-86  (327)
 98 PTZ00082 L-lactate dehydrogena  96.4    0.03 7.6E-07   33.2   8.6   55    3-58      9-84  (322)
 99 PRK05442 malate dehydrogenase;  96.4   0.012 3.1E-07   35.6   6.4   57    2-58      5-89  (325)
100 PRK08818 prephenate dehydrogen  96.4    0.02 5.1E-07   34.2   7.5   80    3-86      6-92  (373)
101 PRK06223 malate dehydrogenase;  96.4   0.044 1.1E-06   32.1   9.2   34    2-36      1-35  (312)
102 COG0039 Mdh Malate/lactate deh  96.4   0.057 1.5E-06   31.4   9.6   56    2-58      1-78  (313)
103 COG1004 Ugd Predicted UDP-gluc  96.3   0.028   7E-07   33.4   7.7   57    2-60      1-87  (414)
104 PRK10217 dTDP-glucose 4,6-dehy  96.3   0.015 3.7E-07   35.1   6.2   34    1-34      1-34  (355)
105 cd05293 LDH_1 A subgroup of L-  96.3   0.074 1.9E-06   30.7   9.7   34    2-36      4-38  (312)
106 cd01484 E1-2_like Ubiquitin ac  96.2   0.026 6.7E-07   33.5   7.3   96    3-101     1-141 (234)
107 TIGR01214 rmlD dTDP-4-dehydror  96.2  0.0073 1.9E-07   37.0   4.1   83    3-89      1-116 (317)
108 PRK08229 2-dehydropantoate 2-r  96.1   0.037 9.3E-07   32.6   7.6   66    1-68      2-92  (341)
109 cd01339 LDH-like_MDH L-lactate  96.1   0.063 1.6E-06   31.1   8.8   55    4-59      1-76  (300)
110 COG1042 Acyl-CoA synthetase (N  96.1   0.055 1.4E-06   31.5   8.4  112    3-118    12-132 (598)
111 PRK00066 ldh L-lactate dehydro  96.0   0.099 2.5E-06   29.9   9.5   56    2-58      7-82  (315)
112 COG0240 GpsA Glycerol-3-phosph  96.0   0.042 1.1E-06   32.2   7.4   81    1-85      1-108 (329)
113 PRK00045 hemA glutamyl-tRNA re  96.0   0.037 9.4E-07   32.6   7.1   90    2-92    183-290 (429)
114 cd01489 Uba2_SUMO Ubiquitin ac  95.9   0.024 6.1E-07   33.8   5.9  112    3-118     1-156 (312)
115 PRK08374 homoserine dehydrogen  95.9   0.063 1.6E-06   31.1   8.1   80    2-84      3-117 (316)
116 pfam01073 3Beta_HSD 3-beta hyd  95.9   0.055 1.4E-06   31.5   7.7   30    6-35      2-32  (280)
117 PRK11559 garR tartronate semia  95.9   0.027 6.9E-07   33.4   6.0   79    2-84      2-97  (295)
118 TIGR01546 GAPDH-II_archae glyc  95.8    0.13 3.2E-06   29.3   9.3  170   38-238    61-242 (335)
119 cd00300 LDH_like L-lactate deh  95.8   0.076 1.9E-06   30.6   8.2   55    4-59      1-76  (300)
120 cd01490 Ube1_repeat2 Ubiquitin  95.8   0.029 7.4E-07   33.2   6.0   95    3-100     1-147 (435)
121 PRK06270 homoserine dehydrogen  95.8   0.051 1.3E-06   31.7   7.3   79    2-83      3-126 (342)
122 cd05290 LDH_3 A subgroup of L-  95.8   0.094 2.4E-06   30.1   8.6   55    3-58      1-77  (307)
123 pfam03447 NAD_binding_3 Homose  95.8   0.066 1.7E-06   31.0   7.6   70   11-82      3-89  (116)
124 cd01078 NAD_bind_H4MPT_DH NADP  95.7    0.06 1.5E-06   31.3   7.2   79    2-83     29-130 (194)
125 pfam01370 Epimerase NAD depend  95.7    0.14 3.5E-06   29.1   8.9   31    4-35      1-31  (235)
126 PRK05808 3-hydroxybutyryl-CoA   95.6   0.095 2.4E-06   30.0   8.0   87    1-89      3-125 (282)
127 COG3268 Uncharacterized conser  95.6    0.15 3.8E-06   28.8   8.8  142    3-153     8-177 (382)
128 PRK12367 short chain dehydroge  95.5   0.063 1.6E-06   31.1   6.8   56    2-58     18-91  (250)
129 PRK06129 3-hydroxyacyl-CoA deh  95.5    0.13 3.4E-06   29.1   8.4   86    1-88      2-124 (308)
130 TIGR03376 glycerol3P_DH glycer  95.5    0.12   3E-06   29.5   8.0   97    3-100     1-134 (342)
131 PRK09987 dTDP-4-dehydrorhamnos  95.4    0.12 3.2E-06   29.3   8.0   86    2-89      1-110 (299)
132 PRK12491 pyrroline-5-carboxyla  95.4   0.038 9.7E-07   32.5   5.3  152    2-157     3-179 (272)
133 PRK06349 homoserine dehydrogen  95.4    0.16   4E-06   28.7   8.4   80    2-84      4-106 (432)
134 PRK07531 bifunctional 3-hydrox  95.2    0.18 4.7E-06   28.3   8.4   86    1-88      2-120 (489)
135 pfam00899 ThiF ThiF family. Th  95.2     0.2 5.1E-06   28.0   8.4   78    2-82      2-123 (134)
136 PRK12464 1-deoxy-D-xylulose 5-  95.2   0.081 2.1E-06   30.5   6.4   34    6-39      1-35  (392)
137 COG0743 Dxr 1-deoxy-D-xylulose  95.2   0.038 9.8E-07   32.5   4.7   37    1-37      1-38  (385)
138 PRK04663 murD UDP-N-acetylmura  95.2     0.1 2.6E-06   29.8   6.9   74    1-75      7-94  (438)
139 COG0702 Predicted nucleoside-d  95.1   0.069 1.7E-06   30.9   5.9   56    2-58      1-72  (275)
140 COG5322 Predicted dehydrogenas  95.1   0.034 8.8E-07   32.8   4.2   86    3-91    169-270 (351)
141 cd01483 E1_enzyme_family Super  95.0    0.22 5.6E-06   27.8   8.2   78    3-83      1-122 (143)
142 PRK07066 3-hydroxybutyryl-CoA   95.0     0.2 5.2E-06   28.0   8.0   86    1-88      7-125 (321)
143 TIGR01777 yfcH conserved hypot  94.9   0.029 7.3E-07   33.3   3.5  132    4-162     1-140 (307)
144 pfam04321 RmlD_sub_bind RmlD s  94.8    0.25 6.4E-06   27.4   8.1   53    4-57      1-57  (284)
145 cd00757 ThiF_MoeB_HesA_family   94.8     0.3 7.7E-06   27.0   8.7   92    2-97     22-157 (228)
146 PRK09260 3-hydroxybutyryl-CoA   94.8    0.16 4.1E-06   28.6   7.0  118    1-122     2-164 (289)
147 cd01488 Uba3_RUB Ubiquitin act  94.8    0.17 4.5E-06   28.4   7.2   66    3-69      1-108 (291)
148 PRK09117 consensus              94.8    0.29 7.5E-06   27.0   8.3  118    1-122     2-163 (282)
149 pfam10727 Rossmann-like Rossma  94.7     0.1 2.6E-06   29.9   5.8   79    5-87      1-93  (111)
150 PRK12439 NAD(P)H-dependent gly  94.7    0.25 6.3E-06   27.5   7.8   82    1-84      6-112 (340)
151 KOG1430 consensus               94.7   0.059 1.5E-06   31.3   4.6   37    1-37      4-41  (361)
152 COG0451 WcaG Nucleoside-diphos  94.7    0.33 8.4E-06   26.7   9.6   35    3-38      2-36  (314)
153 PRK00683 murD UDP-N-acetylmura  94.6    0.11 2.8E-06   29.7   5.8   73    1-75      3-85  (418)
154 KOG1203 consensus               94.6   0.052 1.3E-06   31.7   4.2   37    1-38     79-115 (411)
155 PRK07530 3-hydroxybutyryl-CoA   94.6    0.29 7.4E-06   27.0   7.9   87    1-89      4-126 (292)
156 PRK08293 3-hydroxybutyryl-CoA   94.6    0.35 8.8E-06   26.6   8.4   87    1-89      3-127 (288)
157 cd05212 NAD_bind_m-THF_DH_Cycl  94.5    0.13 3.4E-06   29.1   6.1   75    2-85     29-103 (140)
158 COG0460 ThrA Homoserine dehydr  94.5    0.28   7E-06   27.2   7.7   80    1-82      3-114 (333)
159 TIGR03026 NDP-sugDHase nucleot  94.5   0.088 2.3E-06   30.2   5.2   58    2-61      1-88  (411)
160 cd06533 Glyco_transf_WecG_TagA  94.5    0.36 9.1E-06   26.5   8.3   97    2-98     47-148 (171)
161 pfam03808 Glyco_tran_WecB Glyc  94.4    0.26 6.6E-06   27.4   7.4   97    2-98     49-150 (172)
162 TIGR00978 asd_EA aspartate-sem  94.4   0.052 1.3E-06   31.6   3.9   94  162-255   180-286 (358)
163 COG0373 HemA Glutamyl-tRNA red  94.4    0.21 5.3E-06   27.9   6.9   89    2-91    179-283 (414)
164 PRK07660 consensus              94.4    0.33 8.4E-06   26.7   7.8   87    1-89      3-125 (283)
165 TIGR00243 Dxr 1-deoxy-D-xylulo  94.4   0.059 1.5E-06   31.3   4.0   34    1-34      2-37  (406)
166 PRK06035 3-hydroxyacyl-CoA deh  94.3    0.37 9.4E-06   26.4   8.0   87    1-89      3-128 (291)
167 TIGR00036 dapB dihydrodipicoli  94.3     0.4   1E-05   26.2   8.8  124    1-135     1-151 (281)
168 PRK06476 pyrroline-5-carboxyla  94.2    0.18 4.5E-06   28.4   6.2   81    2-84      1-95  (255)
169 PRK07424 bifunctional sterol d  94.2     0.2 5.1E-06   28.0   6.5   35    2-37    181-215 (410)
170 pfam03721 UDPG_MGDP_dh_N UDP-g  94.2    0.12 2.9E-06   29.5   5.2   58    2-61      1-87  (185)
171 PRK06813 homoserine dehydrogen  94.2    0.25 6.4E-06   27.4   6.9   78    2-82      3-122 (341)
172 TIGR03589 PseB UDP-N-acetylglu  94.1    0.43 1.1E-05   26.0   8.4   92    2-94      5-136 (324)
173 PRK06130 3-hydroxybutyryl-CoA   94.1    0.39   1E-05   26.2   7.8   86    1-88      5-120 (310)
174 PRK07819 3-hydroxybutyryl-CoA   94.1    0.44 1.1E-05   25.9   8.4   86    1-88      2-124 (284)
175 pfam02737 3HCDH_N 3-hydroxyacy  94.0     0.4   1E-05   26.2   7.7   84    3-88      1-120 (180)
176 PRK02006 murD UDP-N-acetylmura  94.0    0.45 1.2E-05   25.8   8.1   85    1-89      7-112 (501)
177 PRK11064 wecC UDP-N-acetyl-D-m  94.0   0.084 2.2E-06   30.4   4.2   58    1-60      3-86  (415)
178 COG2084 MmsB 3-hydroxyisobutyr  93.9    0.44 1.1E-05   26.0   7.7   80    2-85      1-98  (286)
179 COG0569 TrkA K+ transport syst  93.9    0.45 1.1E-05   25.9   7.7  145    2-158     1-168 (225)
180 PRK06718 precorrin-2 dehydroge  93.8     0.5 1.3E-05   25.6   8.5   70    2-73     11-94  (202)
181 PRK07680 late competence prote  93.7    0.22 5.5E-06   27.9   5.9   84    2-86      1-100 (273)
182 PRK08125 bifunctional UDP-gluc  93.7    0.39 9.9E-06   26.3   7.1   89    2-90    316-441 (660)
183 PRK06444 prephenate dehydrogen  93.6    0.27   7E-06   27.2   6.2   61    2-84      1-61  (197)
184 pfam02826 2-Hacid_dh_C D-isome  93.6    0.22 5.6E-06   27.8   5.7   59    2-62     37-102 (176)
185 pfam02882 THF_DHG_CYH_C Tetrah  93.5    0.29 7.5E-06   27.0   6.3  103    2-117    37-139 (159)
186 KOG1494 consensus               93.5    0.16 4.1E-06   28.7   4.9   36    1-36     28-64  (345)
187 COG1090 Predicted nucleoside-d  93.5    0.16   4E-06   28.7   4.9   60    4-64      1-71  (297)
188 PRK09897 hypothetical protein;  93.5    0.13 3.4E-06   29.2   4.4   42    1-43      1-45  (535)
189 PRK06522 2-dehydropantoate 2-r  93.4    0.36 9.1E-06   26.5   6.6   68    2-71      1-90  (307)
190 PRK09496 trkA potassium transp  93.4    0.41   1E-05   26.1   6.8   69    2-72      1-88  (455)
191 PRK05562 precorrin-2 dehydroge  93.3     0.6 1.5E-05   25.1   8.8   78    2-81     25-117 (222)
192 PRK06249 2-dehydropantoate 2-r  93.3     0.6 1.5E-05   25.1   8.7   64    2-67      6-90  (313)
193 PRK06392 homoserine dehydrogen  93.2    0.63 1.6E-05   25.0   7.6   79    2-83      1-117 (326)
194 TIGR02964 xanthine_xdhC xanthi  93.1    0.16 4.1E-06   28.7   4.4   34    3-37    117-150 (270)
195 KOG2741 consensus               93.0    0.66 1.7E-05   24.8   7.7   73    2-75      7-98  (351)
196 KOG1198 consensus               93.0    0.52 1.3E-05   25.5   6.9   72    3-74    160-250 (347)
197 PRK06719 precorrin-2 dehydroge  93.0    0.67 1.7E-05   24.8   9.5   78    2-81     14-102 (157)
198 KOG2711 consensus               93.0    0.54 1.4E-05   25.4   6.9   90    2-92     22-149 (372)
199 PRK12416 protoporphyrinogen ox  92.9    0.35 8.9E-06   26.5   5.9   77    1-80      1-85  (466)
200 pfam00070 Pyr_redox Pyridine n  92.6    0.55 1.4E-05   25.3   6.6   63    3-84      1-63  (82)
201 PRK10084 dTDP-glucose 4,6 dehy  92.4    0.81 2.1E-05   24.3   7.2   33    3-35      2-34  (352)
202 PRK06487 glycerate dehydrogena  92.3    0.47 1.2E-05   25.8   5.8   25   45-70     41-65  (317)
203 PRK03369 murD UDP-N-acetylmura  92.2    0.61 1.6E-05   25.1   6.4   85    2-90     13-110 (487)
204 COG0771 MurD UDP-N-acetylmuram  92.1    0.86 2.2E-05   24.1   8.8   89    1-92      7-111 (448)
205 PRK11728 hypothetical protein;  92.1    0.88 2.2E-05   24.1   7.8   90    1-91      2-132 (400)
206 cd01080 NAD_bind_m-THF_DH_Cycl  91.9    0.92 2.3E-05   23.9   7.7  106    2-117    45-150 (168)
207 PRK01710 murD UDP-N-acetylmura  91.8    0.92 2.3E-05   24.0   6.9   72    2-75     15-103 (458)
208 TIGR02717 AcCoA-syn-alpha acet  91.8    0.53 1.3E-05   25.4   5.7   84    2-86      8-103 (457)
209 TIGR01915 npdG NADPH-dependent  91.7    0.76 1.9E-05   24.4   6.4   86    2-87      1-116 (233)
210 PRK10124 putative UDP-glucose   91.7    0.98 2.5E-05   23.8   9.4   84    2-86    145-244 (464)
211 COG3804 Uncharacterized conser  91.5       1 2.6E-05   23.7   6.9   77    5-84      5-100 (350)
212 KOG2013 consensus               91.4    0.11 2.7E-06   29.8   1.7   68    2-70     13-124 (603)
213 PRK01368 murD UDP-N-acetylmura  91.3    0.58 1.5E-05   25.2   5.5   83    2-89      7-102 (450)
214 PRK12921 2-dehydropantoate 2-r  91.3     1.1 2.7E-05   23.6   8.6   68    2-71      1-90  (306)
215 PRK00141 murD UDP-N-acetylmura  91.3       1 2.7E-05   23.6   6.7   83    3-89     19-115 (476)
216 PRK10675 UDP-galactose-4-epime  91.2     1.1 2.8E-05   23.5   8.3   31    2-33      1-31  (338)
217 COG0111 SerA Phosphoglycerate   91.2    0.91 2.3E-05   24.0   6.3   26   44-70     40-65  (324)
218 COG1648 CysG Siroheme synthase  91.1     1.1 2.8E-05   23.4   8.9   80    2-83     13-107 (210)
219 cd04510 consensus               90.9    0.77   2E-05   24.4   5.7   56    2-57      2-85  (334)
220 PRK09599 6-phosphogluconate de  90.8    0.86 2.2E-05   24.1   5.9   80    2-85      1-97  (301)
221 KOG2666 consensus               90.7    0.34 8.8E-06   26.6   3.8   56    1-57      1-86  (481)
222 PRK10430 DNA-binding transcrip  90.7     1.2 3.1E-05   23.2   6.7   84    1-84      1-86  (239)
223 TIGR01746 Thioester-redct thio  90.5    0.35 8.9E-06   26.6   3.7   30    3-32      1-33  (405)
224 PRK08666 5'-methylthioadenosin  90.4    0.27 6.9E-06   27.2   3.1   84    1-92      1-93  (261)
225 PRK12490 6-phosphogluconate de  90.4     1.3 3.3E-05   23.0   6.7  141    2-154     1-168 (298)
226 PRK08328 hypothetical protein;  90.4     1.3 3.3E-05   23.0   8.7   96    2-101    28-168 (230)
227 PRK06436 glycerate dehydrogena  90.3     1.1 2.9E-05   23.4   6.2   18  290-307   262-279 (303)
228 TIGR01759 MalateDH-SF1 malate   90.3       1 2.6E-05   23.6   5.9  107    2-125     4-140 (329)
229 PRK03806 murD UDP-N-acetylmura  90.3     1.3 3.4E-05   23.0   7.2   72    2-75      7-91  (438)
230 PRK13984 putative oxidoreducta  90.0     1.1 2.9E-05   23.4   5.9   61    2-64    284-383 (604)
231 PRK08410 2-hydroxyacid dehydro  89.8     1.2 2.9E-05   23.3   5.9   62    2-70      1-62  (311)
232 PRK05708 2-dehydropantoate 2-r  89.6     1.5 3.8E-05   22.6   6.9   78    2-81      3-103 (305)
233 PRK03673 competence damage-ind  89.5       1 2.6E-05   23.7   5.4  113    1-120     1-136 (396)
234 COG1893 ApbA Ketopantoate redu  89.4     1.6   4E-05   22.5   7.2   69    2-72      1-90  (307)
235 pfam02558 ApbA Ketopantoate re  89.2     1.6   4E-05   22.5   8.2   65    4-70      1-87  (150)
236 TIGR01381 E1_like_apg7 E1-like  89.2     1.6 4.1E-05   22.5   7.0  128    2-132   349-572 (689)
237 PRK06029 3-octaprenyl-4-hydrox  89.1    0.55 1.4E-05   25.3   3.8   37    1-37      1-40  (187)
238 PRK08306 dipicolinate synthase  88.9     1.6   4E-05   22.5   6.0   56    2-59      3-65  (296)
239 PRK13243 glyoxylate reductase;  88.7     1.2 3.1E-05   23.2   5.3   72    3-83      4-75  (333)
240 PRK12809 putative oxidoreducta  88.7     1.4 3.6E-05   22.8   5.7   61    2-64    311-410 (639)
241 PRK07201 short chain dehydroge  88.6    0.81 2.1E-05   24.3   4.4   35    3-37      2-36  (663)
242 PRK08268 3-hydroxybutyryl-CoA   88.5     1.8 4.6E-05   22.2   8.2   86    1-88      3-124 (503)
243 PRK10637 cysG siroheme synthas  88.5     1.8 4.6E-05   22.2   8.8   78    2-81     13-105 (457)
244 PRK12769 putative oxidoreducta  88.4     1.6 4.2E-05   22.4   5.8   37    2-40    328-364 (654)
245 PRK00257 erythronate-4-phospha  88.2     1.6 4.2E-05   22.4   5.7   27   39-65     27-53  (379)
246 pfam02423 OCD_Mu_crystall Orni  88.1     1.3 3.3E-05   23.1   5.1   14  294-307   292-305 (312)
247 PRK12480 D-lactate dehydrogena  87.4     2.1 5.3E-05   21.8   6.3   78    1-84      1-78  (330)
248 cd05295 MDH_like Malate dehydr  87.2     1.7 4.2E-05   22.4   5.3   64    2-65    124-217 (452)
249 PRK06847 hypothetical protein;  87.1     1.2 2.9E-05   23.3   4.4   32    1-34      4-35  (375)
250 COG4529 Uncharacterized protei  86.9     1.3 3.3E-05   23.1   4.6   43    1-44      1-47  (474)
251 COG2423 Predicted ornithine cy  86.8     1.4 3.7E-05   22.7   4.8   15  294-308   301-315 (330)
252 cd01487 E1_ThiF_like E1_ThiF_l  86.7     2.3 5.8E-05   21.5   8.2   82    3-88      1-126 (174)
253 PRK11697 putative two-componen  86.5     2.3   6E-05   21.4   7.6   84    1-86      1-87  (239)
254 PRK07688 thiamine/molybdopteri  86.3     2.4 6.1E-05   21.4   6.1  124    2-129    25-193 (339)
255 PRK12810 gltD glutamate syntha  86.2     2.4 6.1E-05   21.4   5.9   37    2-40    144-180 (472)
256 PRK00258 aroE shikimate 5-dehy  86.2     1.9 4.8E-05   22.0   5.1   16  146-161   127-142 (275)
257 PRK01438 murD UDP-N-acetylmura  86.2     2.4 6.2E-05   21.4   8.7   82    2-87     15-114 (481)
258 PRK12814 putative NADPH-depend  86.1     2.1 5.3E-05   21.8   5.3   61    2-64    194-293 (652)
259 cd01065 NAD_bind_Shikimate_DH   86.0     1.8 4.7E-05   22.1   5.0   59    2-61     20-93  (155)
260 pfam07993 NAD_binding_4 Male s  86.0    0.99 2.5E-05   23.7   3.6   30    6-35      1-31  (245)
261 PRK13508 tagatose-6-phosphate   85.7     2.6 6.6E-05   21.2   7.8  101    4-108    56-193 (309)
262 TIGR01772 MDH_euk_gproteo mala  85.6     2.5 6.3E-05   21.3   5.5   26    3-28      1-27  (379)
263 KOG1431 consensus               85.6     1.5 3.7E-05   22.7   4.3   35    1-35      1-37  (315)
264 pfam10100 DUF2338 Uncharacteri  85.5     2.6 6.7E-05   21.1   8.8  128    1-136     1-195 (429)
265 PRK11883 protoporphyrinogen ox  85.4     2.6 6.7E-05   21.1   6.7   80    2-84      1-84  (452)
266 PRK13512 coenzyme A disulfide   85.3     1.5 3.9E-05   22.6   4.3   36    1-37      1-37  (438)
267 PRK10792 bifunctional 5,10-met  85.3     2.3 5.8E-05   21.5   5.2   17   48-64     61-77  (288)
268 PRK06932 glycerate dehydrogena  85.2     2.7 6.9E-05   21.1   5.9   73    1-83      1-73  (314)
269 KOG2733 consensus               85.2     1.5 3.8E-05   22.7   4.2  123    2-133     6-162 (423)
270 pfam07075 DUF1343 Protein of u  84.9     2.8 7.1E-05   21.0   6.1   71   14-84     14-122 (359)
271 TIGR03219 salicylate_mono sali  84.8     1.5 3.8E-05   22.6   4.1   32    2-34      1-32  (414)
272 pfam00743 FMO-like Flavin-bind  84.8     1.8 4.5E-05   22.2   4.4   37    2-40      2-38  (532)
273 PRK05597 molybdopterin biosynt  84.7     2.9 7.3E-05   20.9   7.9  118    2-122    29-190 (355)
274 COG1232 HemY Protoporphyrinoge  84.7     1.8 4.5E-05   22.2   4.4   72    2-79      1-79  (444)
275 TIGR03385 CoA_CoA_reduc CoA-di  84.6     2.9 7.4E-05   20.9   6.6   56    2-74    138-194 (427)
276 PRK05920 aromatic acid decarbo  84.5     1.7 4.3E-05   22.3   4.2   36    1-37      4-42  (205)
277 KOG0029 consensus               84.3     2.1 5.3E-05   21.7   4.6   43    1-45     15-57  (501)
278 PRK04690 murD UDP-N-acetylmura  84.3       3 7.6E-05   20.8   7.6   76    2-80      9-98  (468)
279 TIGR01035 hemA glutamyl-tRNA r  84.1     2.2 5.6E-05   21.6   4.6   89    2-91    186-302 (436)
280 pfam02153 PDH Prephenate dehyd  84.1     1.8 4.5E-05   22.2   4.2   63   24-86      9-83  (258)
281 PRK11150 rfaD ADP-L-glycero-D-  83.9     3.1 7.9E-05   20.7   8.6   32    4-35      2-33  (308)
282 pfam02254 TrkA_N TrkA-N domain  83.9     3.1 7.9E-05   20.7   6.3   63    4-69      1-81  (115)
283 cd05297 GH4_alpha_glucosidase_  83.3     2.9 7.3E-05   20.9   5.0  115    2-117     1-147 (423)
284 KOG0455 consensus               83.2     3.3 8.4E-05   20.5   7.9   34    3-37      5-46  (364)
285 PRK06617 2-octaprenyl-6-methox  82.9     2.8 7.3E-05   20.9   4.8   33    1-35      1-33  (374)
286 PRK12475 thiamine/molybdopteri  82.8     3.4 8.7E-05   20.4   7.4  123    2-129    25-192 (337)
287 cd01079 NAD_bind_m-THF_DH NAD   82.8     3.4 8.8E-05   20.4   5.4   77    2-85     63-159 (197)
288 PRK12771 putative glutamate sy  82.6     3.5 8.9E-05   20.4   5.8   37    2-40    138-174 (560)
289 PRK05690 molybdopterin biosynt  82.1     3.6 9.3E-05   20.3   8.3   70    2-72     33-145 (245)
290 KOG0657 consensus               81.8     0.7 1.8E-05   24.7   1.4   97   48-151    73-169 (285)
291 PRK08291 ornithine cyclodeamin  81.7     3.2 8.1E-05   20.6   4.7   13  294-306   302-314 (330)
292 COG0300 DltE Short-chain dehyd  81.7     3.8 9.6E-05   20.2   5.7   82    1-83      6-93  (265)
293 COG0190 FolD 5,10-methylene-te  81.3     3.9 9.9E-05   20.1   5.3   31   52-82     34-68  (283)
294 COG1252 Ndh NADH dehydrogenase  81.3     3.4 8.7E-05   20.4   4.8   36    1-37      3-39  (405)
295 PRK07574 formate dehydrogenase  81.3     3.9 9.9E-05   20.1   6.2   52   18-71     61-114 (385)
296 KOG2337 consensus               81.1     3.9  0.0001   20.0   7.0  129    2-132   341-563 (669)
297 PRK12409 D-amino acid dehydrog  81.0     3.3 8.5E-05   20.5   4.6   34    1-36      1-34  (410)
298 KOG0172 consensus               80.8       4  0.0001   20.0   5.6   71    1-72      2-91  (445)
299 PRK09754 phenylpropionate diox  80.4     4.2 0.00011   19.9   7.3   36    2-38      4-40  (400)
300 COG0163 UbiX 3-polyprenyl-4-hy  80.1     3.7 9.5E-05   20.2   4.6   33    4-37      7-40  (191)
301 cd05197 GH4_glycoside_hydrolas  79.6     4.4 0.00011   19.7   4.9  109    2-113     1-141 (425)
302 PRK04965 nitric oxide reductas  79.4     3.5 9.1E-05   20.3   4.3   36    1-37      1-38  (378)
303 PRK07102 short chain dehydroge  79.4     3.2 8.2E-05   20.6   4.1   45    1-46      1-45  (243)
304 PRK07340 ornithine cyclodeamin  79.1     3.9 9.9E-05   20.1   4.5   11  295-305   285-295 (304)
305 PRK06141 ornithine cyclodeamin  78.9     4.6 0.00012   19.6   4.8   15  294-308   294-308 (313)
306 PRK08118 topology modulation p  78.5       2 5.1E-05   21.9   2.8   33    1-33      1-36  (167)
307 TIGR00421 ubiX_pad polyprenyl   78.5     3.1 7.8E-05   20.7   3.8   36    1-37      1-37  (181)
308 PRK04308 murD UDP-N-acetylmura  78.2     4.9 0.00012   19.5   6.8   72    2-75      6-93  (445)
309 PRK08605 D-lactate dehydrogena  78.0     4.9 0.00013   19.4   5.2   77    1-83      1-77  (332)
310 KOG0685 consensus               77.9     3.8 9.6E-05   20.1   4.1   40    3-43     23-62  (498)
311 cd05298 GH4_GlvA_pagL_like Gly  77.7       5 0.00013   19.4   4.8   56    2-57      1-82  (437)
312 PRK11749 putative oxidoreducta  77.4     5.2 0.00013   19.3   5.5   38    2-41    141-178 (460)
313 PRK06912 acoL dihydrolipoamide  77.0     5.3 0.00013   19.3   5.1   21    3-24      2-22  (458)
314 PRK09483 response regulator; P  76.2     5.5 0.00014   19.1   4.8   81    1-83      1-83  (216)
315 PRK08643 acetoin reductase; Va  75.9     5.6 0.00014   19.1   8.0   85    1-86      1-91  (256)
316 PRK07208 hypothetical protein;  75.9     5.7 0.00014   19.1   4.6   39    2-42      4-42  (474)
317 PRK05653 fabG 3-ketoacyl-(acyl  75.4     5.8 0.00015   19.0   5.1   96    4-105     8-108 (246)
318 PRK05868 hypothetical protein;  75.4     5.1 0.00013   19.3   4.2   31    1-33      1-31  (372)
319 TIGR00232 tktlase_bact transke  75.0     5.9 0.00015   18.9   4.4   27  137-163   234-260 (675)
320 PRK09466 metL bifunctional asp  75.0       6 0.00015   18.9   7.4   31    2-33    459-496 (810)
321 COG3349 Uncharacterized conser  74.6     6.1 0.00016   18.9   4.5   39    2-42      1-39  (485)
322 PRK12778 putative bifunctional  74.4     6.2 0.00016   18.8   6.2   37    2-40    440-476 (760)
323 TIGR00065 ftsZ cell division p  74.4     6.2 0.00016   18.8   5.5  141    2-152    18-211 (365)
324 PRK06823 ornithine cyclodeamin  74.3     5.9 0.00015   19.0   4.3   14  294-307   296-309 (315)
325 cd01486 Apg7 Apg7 is an E1-lik  74.2     6.3 0.00016   18.8   6.7   80    3-84      1-142 (307)
326 TIGR03450 mycothiol_INO1 inosi  73.5     6.5 0.00017   18.7   8.0   81    2-85      1-160 (351)
327 pfam06408 consensus             73.2     6.6 0.00017   18.6   5.3   78    3-83      3-108 (471)
328 TIGR03169 Nterm_to_SelD pyridi  72.6       6 0.00015   18.9   4.0   34    3-37      1-36  (364)
329 cd05296 GH4_P_beta_glucosidase  72.5     6.9 0.00018   18.5   4.7  111    2-117     1-146 (419)
330 PRK06046 alanine dehydrogenase  72.3     6.9 0.00018   18.5   5.3   12  294-305   297-308 (326)
331 PRK06217 hypothetical protein;  72.1     3.6 9.2E-05   20.3   2.8   31    1-31      1-34  (185)
332 TIGR03025 EPS_sugtrans exopoly  71.8     7.1 0.00018   18.4   9.5   77    2-79    126-221 (445)
333 PRK07432 5'-methylthioadenosin  71.7     4.1  0.0001   19.9   3.0   89    3-97      5-105 (290)
334 TIGR01763 MalateDH_bact malate  71.6     4.6 0.00012   19.6   3.2   41    2-43      2-47  (308)
335 COG1052 LdhA Lactate dehydroge  71.6     7.2 0.00018   18.4   5.1   67   10-83      8-74  (324)
336 COG4408 Uncharacterized protei  71.5     7.2 0.00018   18.4   5.7   86    1-87      4-151 (431)
337 pfam10087 DUF2325 Uncharacteri  71.4     7.3 0.00019   18.4   8.3   84    3-87      1-87  (96)
338 COG0654 UbiH 2-polyprenyl-6-me  71.3     7.3 0.00019   18.4   4.3   33    1-35      2-34  (387)
339 PRK06753 hypothetical protein;  71.2     6.6 0.00017   18.7   3.9   30    2-33      1-30  (373)
340 TIGR01408 Ube1 ubiquitin-activ  71.0     7.4 0.00019   18.3   4.2   66    2-68    432-552 (1033)
341 KOG1221 consensus               70.2     7.7  0.0002   18.2   4.7   38    3-40     14-52  (467)
342 PRK06407 ornithine cyclodeamin  70.0     7.8  0.0002   18.2   4.6   17  294-310   282-298 (302)
343 cd05568 PTS_IIB_bgl_like PTS_I  69.9     7.9  0.0002   18.2   5.2   55    2-60      1-57  (85)
344 PRK10360 DNA-binding transcrip  69.3     8.1 0.00021   18.1   6.3   69    1-71      1-71  (196)
345 TIGR01988 Ubi-OHases Ubiquinon  69.2     8.1 0.00021   18.1   4.3   33    3-36      1-37  (445)
346 PRK08010 pyridine nucleotide-d  68.9     8.2 0.00021   18.1   6.2   24   60-83    168-191 (441)
347 COG3400 Uncharacterized protei  68.8     8.1 0.00021   18.1   4.0   55    1-59      1-58  (471)
348 PRK09436 thrA bifunctional asp  67.6     8.8 0.00022   17.9   7.9   30    2-32    466-501 (817)
349 KOG2012 consensus               67.4     4.4 0.00011   19.7   2.4   66    2-68    431-548 (1013)
350 PRK09009 C factor cell-cell si  67.3     8.9 0.00023   17.9   4.1   31    2-32      1-32  (235)
351 PRK09564 coenzyme A disulfide   67.0       9 0.00023   17.8   6.5   34    2-36      1-35  (443)
352 TIGR01421 gluta_reduc_1 glutat  66.5     5.4 0.00014   19.2   2.7   22    2-24    182-203 (475)
353 PRK11730 fadB multifunctional   66.5     9.2 0.00023   17.8   7.9   86    2-89    314-435 (715)
354 PRK09853 putative selenate red  66.1     9.4 0.00024   17.7   5.8   36    2-39    551-586 (1032)
355 PRK12831 putative oxidoreducta  65.8     9.5 0.00024   17.7   5.7   37    2-40    141-177 (464)
356 KOG2742 consensus               65.7     3.3 8.5E-05   20.5   1.5   84    4-90      5-107 (367)
357 PRK08931 5'-methylthioadenosin  65.3     2.7 6.9E-05   21.0   1.0   90    1-96      1-104 (289)
358 cd05191 NAD_bind_amino_acid_DH  64.9     9.9 0.00025   17.6   6.3   46    2-64     24-69  (86)
359 PRK01390 murD UDP-N-acetylmura  64.1      10 0.00026   17.5   6.1   74    2-79     10-97  (457)
360 KOG1496 consensus               63.9      10 0.00026   17.5   7.1   68    2-69      5-102 (332)
361 cd02201 FtsZ_type1 FtsZ is a G  63.9      10 0.00026   17.4   9.7   88    2-90      1-130 (304)
362 COG1486 CelF Alpha-galactosida  63.6      10 0.00027   17.4   4.6   57    1-57      3-85  (442)
363 PRK12384 sorbitol-6-phosphate   63.4      11 0.00027   17.4   7.1   86    1-87      1-94  (259)
364 PRK07578 short chain dehydroge  63.3      11 0.00027   17.4   6.0   23    2-24      1-23  (199)
365 PRK08263 short chain dehydroge  63.2      11 0.00027   17.4   5.3   99    1-105     2-103 (275)
366 PRK06370 mercuric reductase; V  62.7      11 0.00028   17.3   4.6   22    2-24      5-26  (459)
367 TIGR02053 MerA mercuric reduct  62.6     7.9  0.0002   18.2   2.9   81    1-100   181-266 (494)
368 PRK08849 2-octaprenyl-3-methyl  62.6      11 0.00028   17.3   4.4   32    1-34      1-34  (384)
369 PRK05600 thiamine biosynthesis  62.3      11 0.00028   17.3   7.4  119    2-123    42-207 (370)
370 TIGR03315 Se_ygfK putative sel  61.3      12 0.00029   17.2   5.5   36    2-39    538-573 (1012)
371 pfam02800 Gp_dh_C Glyceraldehy  61.2      12 0.00029   17.2   6.6  107  124-241     3-112 (158)
372 KOG3985 consensus               61.2      12 0.00029   17.1   3.6   87    1-97      9-111 (283)
373 COG3320 Putative dehydrogenase  61.2      12 0.00029   17.1   4.3   31    3-33      2-32  (382)
374 PRK08644 thiamine biosynthesis  61.1      12 0.00029   17.1   8.1   78    2-82     28-149 (209)
375 pfam02056 Glyco_hydro_4 Family  61.0      12  0.0003   17.1   4.3  114    3-117     1-146 (183)
376 TIGR01350 lipoamide_DH dihydro  60.4      12  0.0003   17.1   6.5   97    3-117   180-281 (481)
377 PRK08850 2-octaprenyl-6-methox  60.3      12 0.00031   17.0   3.8   28    4-33      7-34  (405)
378 PRK06015 keto-hydroxyglutarate  59.9      12 0.00031   17.0   4.3  111   14-124     5-122 (212)
379 PRK06101 short chain dehydroge  59.5      12 0.00032   17.0   5.6   36    1-37      1-36  (241)
380 COG1058 CinA Predicted nucleot  59.5      12 0.00032   17.0   5.4  103   17-124    26-140 (255)
381 TIGR03329 Phn_aa_oxid putative  59.4      12 0.00032   17.0   4.0   31    3-34     26-57  (460)
382 TIGR01087 murD UDP-N-acetylmur  59.4      12 0.00032   17.0   5.0  134    3-162     1-155 (476)
383 COG0075 Serine-pyruvate aminot  59.2      13 0.00032   16.9   9.1  118   28-153    57-176 (383)
384 PRK06199 ornithine cyclodeamin  59.1      13 0.00032   16.9   4.8   15   49-63     73-87  (379)
385 PTZ00188 adrenodoxin reductase  59.1      13 0.00032   16.9   6.8   58    2-60     40-137 (506)
386 KOG0409 consensus               58.7      13 0.00033   16.9   5.0   63    1-65     35-107 (327)
387 TIGR02735 purC_vibrio phosphor  58.4     4.7 0.00012   19.6   1.2   28   60-94     88-115 (365)
388 TIGR00745 apbA_panE 2-dehydrop  58.4      13 0.00033   16.8   8.4   94    3-97      1-126 (332)
389 PRK07818 dihydrolipoamide dehy  57.6      13 0.00034   16.8   5.7   20    4-24      7-26  (467)
390 PRK08773 2-octaprenyl-3-methyl  57.4      13 0.00034   16.7   4.0   29    4-34      9-37  (392)
391 COG1086 Predicted nucleoside-d  57.3      13 0.00034   16.7   6.4   75    2-77    117-208 (588)
392 PRK06698 bifunctional 5'-methy  57.3      13 0.00033   16.8   3.3   25    1-28      1-25  (459)
393 pfam01262 AlaDh_PNT_C Alanine   57.2      14 0.00034   16.7   6.1   19   65-83     35-53  (150)
394 COG0604 Qor NADPH:quinone redu  57.0      14 0.00035   16.7   8.2   80    3-83    145-244 (326)
395 TIGR01318 gltD_gamma_fam gluta  56.7      14 0.00035   16.7   5.6   36    2-39    144-179 (480)
396 PRK06482 short chain dehydroge  56.7      14 0.00035   16.7   7.0   83    1-84      1-86  (276)
397 cd01485 E1-1_like Ubiquitin ac  56.6      14 0.00035   16.7   7.6   27    2-29     20-46  (198)
398 pfam02719 Polysacc_synt_2 Poly  56.5      14 0.00035   16.7   4.7   32    4-35      1-32  (280)
399 cd01492 Aos1_SUMO Ubiquitin ac  56.5      14 0.00035   16.6   8.7   70    2-72     22-133 (197)
400 PRK07455 keto-hydroxyglutarate  56.1      14 0.00036   16.6   4.4  110   15-124     4-120 (210)
401 PRK07233 hypothetical protein;  56.0      14 0.00036   16.6   4.2   38    3-42      1-38  (430)
402 PRK11154 fadJ multifunctional   55.9      14 0.00036   16.6   7.1   87    2-89    310-432 (706)
403 PRK06116 glutathione reductase  55.7      14 0.00036   16.6   5.3   19  266-284   385-403 (450)
404 PRK09414 glutamate dehydrogena  55.2      15 0.00037   16.5   6.4   12  291-302   423-434 (446)
405 PRK12550 shikimate 5-dehydroge  55.0      15 0.00037   16.5   4.9  116   36-161    20-142 (272)
406 PRK13018 cell division protein  54.9      15 0.00038   16.5   9.8   87    3-90     29-157 (387)
407 PRK07236 hypothetical protein;  54.7      15 0.00038   16.5   3.8   30    2-33      7-36  (386)
408 PRK06552 keto-hydroxyglutarate  54.6      15 0.00038   16.5   3.8  110   14-124     3-123 (209)
409 PTZ00318 NADH dehydrogenase; P  54.2      15 0.00039   16.4   4.0   33    3-37     12-44  (514)
410 PRK08013 hypothetical protein;  54.0      15 0.00039   16.4   4.0   32    1-34      1-34  (400)
411 PRK07588 hypothetical protein;  53.3      16  0.0004   16.3   3.9   29    2-32      1-29  (391)
412 PRK09126 hypothetical protein;  53.3      16  0.0004   16.3   3.8   32    1-34      1-34  (392)
413 PRK09310 aroDE bifunctional 3-  53.2      16  0.0004   16.3   4.7   11  110-120   134-144 (477)
414 PRK08163 salicylate hydroxylas  53.2      16  0.0004   16.3   4.3   32    2-35      5-36  (396)
415 KOG0069 consensus               53.1      16  0.0004   16.3   5.5   13  293-305   310-322 (336)
416 PRK13581 D-3-phosphoglycerate   53.1      16  0.0004   16.3   5.4   59    2-62    139-205 (524)
417 pfam06263 consensus             52.9     8.3 0.00021   18.0   1.7   88   47-148   113-201 (514)
418 PRK06091 membrane protein FdrA  52.9     8.3 0.00021   18.0   1.7   88   47-148   115-203 (555)
419 COG0579 Predicted dehydrogenas  52.7      16 0.00041   16.3   4.8   32    1-33      3-35  (429)
420 KOG1399 consensus               52.4      16 0.00041   16.2   3.8   29    2-32      7-35  (448)
421 cd04161 Arl2l1_Arl13_like Arl2  52.3      16 0.00041   16.2   5.8  143    4-155     2-152 (167)
422 PTZ00052 thioredoxin reductase  52.0      16 0.00042   16.2   3.9   19    4-23     44-62  (541)
423 KOG1429 consensus               51.8      15 0.00039   16.4   2.9   23    2-24     28-50  (350)
424 COG4987 CydC ABC-type transpor  50.7      14 0.00035   16.7   2.5   17  145-161   368-384 (573)
425 COG2099 CobK Precorrin-6x redu  50.6      17 0.00044   16.1   6.8   94    1-103     2-106 (257)
426 PRK07411 hypothetical protein;  50.4      17 0.00044   16.0   7.1   87    2-91     39-168 (390)
427 TIGR02374 nitri_red_nirB nitri  50.2      16 0.00042   16.2   2.9   35    4-39      1-38  (813)
428 PRK09986 DNA-binding transcrip  49.6      16  0.0004   16.3   2.7   60    2-63     83-144 (278)
429 PRK03815 murD UDP-N-acetylmura  49.3      18 0.00046   15.9   5.6   63    2-67      1-72  (401)
430 PRK08219 short chain dehydroge  49.0      18 0.00047   15.9   7.2   32    1-34      3-34  (226)
431 PRK06416 dihydrolipoamide dehy  48.4      19 0.00048   15.8   5.3   30    2-33      5-34  (462)
432 COG3840 ThiQ ABC-type thiamine  47.9      19 0.00048   15.8   4.0   38    3-40     27-66  (231)
433 PRK05976 dihydrolipoamide dehy  47.8      19 0.00049   15.8   5.6   27    4-32      7-33  (464)
434 PRK12549 shikimate 5-dehydroge  47.7      19 0.00049   15.8   4.7   16  146-161   132-147 (284)
435 PRK07538 hypothetical protein;  47.7      19 0.00049   15.8   3.9   30    2-33      1-30  (413)
436 COG4091 Predicted homoserine d  47.5      19 0.00049   15.8   3.9   34    2-36     18-51  (438)
437 PRK05732 2-octaprenyl-6-methox  47.1      20  0.0005   15.7   4.4   32    1-33      1-36  (395)
438 TIGR00101 ureG urease accessor  47.0      20  0.0005   15.7   3.1   85    1-87      1-128 (199)
439 pfam10662 PduV-EutP Ethanolami  46.9      17 0.00043   16.1   2.5   24    1-24      1-24  (143)
440 cd06335 PBP1_ABC_ligand_bindin  46.5      20 0.00051   15.7   8.2   53   26-80     40-96  (347)
441 TIGR01001 metA homoserine O-su  45.8      21 0.00052   15.6   2.9   27   14-40     51-78  (305)
442 COG4565 CitB Response regulato  45.5      21 0.00053   15.6   6.1   83    2-86      1-87  (224)
443 cd06268 PBP1_ABC_transporter_L  45.5      21 0.00053   15.6   6.5   55   26-82     40-97  (298)
444 TIGR02041 CysI sulfite reducta  45.4      11 0.00028   17.3   1.4   21   82-102   377-397 (550)
445 PRK07261 topology modulation p  45.4      21 0.00053   15.6   3.0   31    2-32      1-34  (171)
446 COG0665 DadA Glycine/D-amino a  44.3      22 0.00055   15.5   4.8   34    1-36      4-37  (387)
447 cd01493 APPBP1_RUB Ubiquitin a  44.3      22 0.00055   15.5   7.5   80    2-82     21-146 (425)
448 PRK02472 murD UDP-N-acetylmura  44.1      22 0.00056   15.4   6.6   72    2-75     10-98  (450)
449 TIGR01192 chvA glucan exporter  43.8      18 0.00047   15.9   2.3   24    4-27    364-389 (592)
450 PRK07494 2-octaprenyl-6-methox  43.4      22 0.00057   15.4   4.3   30    4-35      8-37  (386)
451 PRK13059 putative lipid kinase  43.3      22 0.00057   15.4   7.2   83    1-84      1-93  (294)
452 PRK08774 consensus              43.2      23 0.00057   15.4   4.2   33    1-35      1-36  (402)
453 PRK12743 acetoin dehydrogenase  42.9      23 0.00058   15.3   6.3   87    1-88      1-94  (253)
454 PRK13949 shikimate kinase; Pro  42.9      23 0.00058   15.3   3.9   42    1-43      1-45  (169)
455 PRK11101 glpA sn-glycerol-3-ph  42.8      23 0.00058   15.3   5.4   87    2-90      6-129 (545)
456 TIGR03023 WcaJ_sugtrans Undeca  42.8      23 0.00058   15.3   9.9   77    2-79    129-224 (451)
457 KOG0405 consensus               42.3      23 0.00059   15.3   2.8   12  281-292   316-327 (478)
458 PRK11914 diacylglycerol kinase  42.3      23 0.00059   15.3   6.9   83    1-84      6-97  (304)
459 pfam09314 DUF1972 Domain of un  42.2      23 0.00059   15.3   8.8   57    1-59      1-65  (185)
460 PRK10522 multidrug transporter  42.1      23  0.0006   15.3   2.9   10  148-157   356-365 (547)
461 PRK01747 mnmC 5-methylaminomet  41.8      24  0.0006   15.2   4.5   30    3-34    258-287 (660)
462 PRK07845 flavoprotein disulfid  41.5      24 0.00061   15.2   6.8   30    1-32      1-30  (467)
463 PRK08762 molybdopterin biosynt  41.4      24 0.00061   15.2   7.8   49   48-97     57-107 (379)
464 cd01075 NAD_bind_Leu_Phe_Val_D  41.1      24 0.00062   15.2   5.6   22    2-24     29-50  (200)
465 TIGR03013 EpsB_2 sugar transfe  40.9      24 0.00062   15.1   7.2   81    2-85    125-223 (442)
466 PRK12862 malic enzyme; Reviewe  40.8      24 0.00062   15.1  10.1   70    2-72    193-284 (761)
467 KOG2304 consensus               40.8      23  0.0006   15.2   2.5   36    1-38     11-46  (298)
468 PRK08020 ubiF 2-octaprenyl-3-m  40.6      25 0.00063   15.1   4.1   30    3-34      7-36  (391)
469 KOG3923 consensus               40.5      25 0.00063   15.1   3.5   64    1-67      3-74  (342)
470 PRK10651 transcriptional regul  40.4      25 0.00063   15.1   4.0   79    2-82      7-87  (216)
471 COG0608 RecJ Single-stranded D  40.2      25 0.00064   15.1   7.6  110    3-116    38-153 (491)
472 PRK05249 soluble pyridine nucl  40.1      25 0.00064   15.1   6.2   28    3-32      8-35  (465)
473 cd06326 PBP1_STKc_like Type I   40.0      25 0.00064   15.1   6.7   53   26-80     41-97  (336)
474 PRK06857 consensus              39.4      26 0.00066   15.0   4.7  110   15-124     3-119 (209)
475 TIGR01984 UbiH 2-polyprenyl-6-  39.3      19 0.00047   15.9   1.8   29    3-32      1-33  (425)
476 PRK13748 putative mercuric red  39.3      26 0.00066   15.0   5.3   31   49-81     98-129 (561)
477 TIGR02324 CP_lyasePhnL phospho  39.2      12 0.00031   17.0   0.8   39  143-189    36-74  (224)
478 PRK08887 nicotinic acid mononu  39.1      15 0.00039   16.4   1.3   10    1-10      1-10  (173)
479 cd02191 FtsZ FtsZ is a GTPase   39.1      26 0.00066   15.0   9.1   91    3-94      2-134 (303)
480 PRK08243 4-hydroxybenzoate 3-m  38.9      26 0.00067   14.9   3.0   29    3-33      4-32  (392)
481 PRK07846 mycothione/glutathion  38.8      26 0.00067   14.9   5.1   23   61-83    179-201 (453)
482 PRK13947 shikimate kinase; Pro  38.7      26 0.00067   14.9   3.7   42    1-43      1-45  (171)
483 COG2072 TrkA Predicted flavopr  38.6      26 0.00067   14.9   4.5   37    1-39      8-45  (443)
484 cd04509 PBP1_ABC_transporter_G  38.6      26 0.00067   14.9   8.8   55   26-82     40-98  (299)
485 PRK01395 V-type ATP synthase s  38.4      16  0.0004   16.3   1.2   30   49-79     22-51  (104)
486 PRK07333 2-octaprenyl-6-methox  38.3      27 0.00068   14.9   4.5   32    3-35      3-35  (403)
487 PRK06714 S-adenosylhomocystein  38.3      16  0.0004   16.3   1.3   23    1-23      1-23  (236)
488 PRK12775 putative trifunctiona  38.3      27 0.00068   14.9   5.7   35    3-39    434-468 (993)
489 PTZ00293 thymidine kinase; Pro  38.3      27 0.00068   14.9   4.8   47   46-96     74-128 (284)
490 PRK07251 pyridine nucleotide-d  38.0      27 0.00069   14.8   5.9   24   61-84    168-191 (438)
491 TIGR01281 DPOR_bchL light-inde  37.7      11 0.00028   17.3   0.4   17  222-238   229-245 (275)
492 PRK05718 keto-hydroxyglutarate  37.7      27  0.0007   14.8   5.7  110   15-124     6-122 (212)
493 cd06343 PBP1_ABC_ligand_bindin  37.4      28 0.00071   14.8   5.8   85    1-85    144-235 (362)
494 COG0562 Glf UDP-galactopyranos  37.1      28 0.00071   14.8   4.6   37    1-39      1-37  (374)
495 PRK07024 short chain dehydroge  36.6      29 0.00073   14.7   5.4   57    1-58      2-86  (256)
496 COG2130 Putative NADP-dependen  36.4      29 0.00073   14.7   5.3   80    4-85    154-254 (340)
497 PRK12824 acetoacetyl-CoA reduc  36.4      29 0.00073   14.7   7.2  101    1-106     1-107 (245)
498 PRK13657 cyclic beta-1,2-gluca  36.3      29 0.00073   14.7   2.6   21    3-23    363-383 (585)
499 cd06334 PBP1_ABC_ligand_bindin  36.3      29 0.00073   14.7   8.4   84    1-84    140-230 (351)
500 KOG2015 consensus               36.3      29 0.00074   14.7   5.3   64    3-67     42-147 (422)

No 1  
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706   N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined .   The pathway from glutamate to arginine is:   NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) ,  is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process.
Probab=100.00  E-value=0  Score=601.52  Aligned_cols=294  Identities=29%  Similarity=0.441  Sum_probs=262.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCC-----------------------HHHH-CCCCEEEE
Q ss_conf             079997588678999999986299728999965300--786006-----------------------6774-79989999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYR-----------------------EDLL-NAADVSIL   55 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~-----------------------~~~~-~~~Divf~   55 (311)
                      +||||||||||+|.||+|||.+||.+|+..+.|+++  +||++.                       ++.. ++||+||+
T Consensus         1 ~~V~IvGAsGYtG~EL~RLL~~HP~~e~~~~~ss~~~~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~~L~~~DvVFl   80 (361)
T TIGR01850         1 IKVGIVGASGYTGGELLRLLANHPEVEITYLVSSRESLAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEIELEDADVVFL   80 (361)
T ss_pred             CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEEHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf             96899933444689999998419953788888762011385257736611101002333666766788862137678998


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH------------------HHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             38983789999998612584898227630355543------------------110021000477652049607725842
Q gi|254780294|r   56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG------------------WVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~------------------vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      ||||++|++++|.+.++|  ++|||+|+|||+++.                  ++|++||++. +++.++++++||||||
T Consensus        81 AlPhgvs~~~~p~~l~~g--~~ViDLSADFRl~d~~~Ye~wYG~h~~~~ll~~avYGLpEl~~-~re~i~~A~liAnPGC  157 (361)
T TIGR01850        81 ALPHGVSMELAPELLEAG--VKVIDLSADFRLKDPEVYEKWYGFHAAPELLQEAVYGLPELHG-AREEIKGARLIANPGC  157 (361)
T ss_pred             CCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHCCCEEECCCC
T ss_conf             687255699999998479--8699888343369979999966778896666311556767010-5889842957644886


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC----
Q ss_conf             1133112478888850345565026765123333561000000134443223433222223444443420133216----
Q gi|254780294|r  118 YATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSL----  193 (311)
Q Consensus       118 ~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~----  193 (311)
                      |+|+++|+|+||.+...+.....++++++||+||||+++....+.+    +..+|..+|.....|||.|||+|.+.    
T Consensus       158 YpTA~~LaL~PL~~~~l~~~~~~~i~dakSGvSGAGr~as~~~~~~----E~~en~~pY~~~G~HRH~PEI~q~L~~~~~  233 (361)
T TIGR01850       158 YPTATLLALAPLLKEGLIDPTSEIIVDAKSGVSGAGRKASEKSHFP----EVNENLRPYKVTGGHRHTPEIEQELGKLAG  233 (361)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH----HHHCCCEECCCCCCCCCHHHHHHHHHHHHC
T ss_conf             1789999989999831567677658988744556677776335734----432770620379985027999998767630


Q ss_pred             --CCEEEEEEEECCCCCCEEEEEEEEEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCCCCHHHHCCCC
Q ss_conf             --71136887520343320278999986325775-448998866542200144305602--7878878986427627996
Q gi|254780294|r  194 --IKTSPMFLPSVGRFPQGIAIQISLDMERLSWK-TNSEELHSIFQEYYMGQNIVSVVP--LEESRKIKTIACEMMSGND  268 (311)
Q Consensus       194 --~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~~--~~~~~~~~~p~~~~~~g~n  268 (311)
                        ...++.||||++|+.|||++|+++.   ..+. .+.+|+++.|.++|++++||+|++  .+     .+|++++|.|||
T Consensus       234 ~~~~~~v~FTPHL~P~~RGIl~T~~~~---l~~~~~~~~~~~~~Y~~~Y~~epFVrv~~~G~~-----~~P~tk~V~GsN  305 (361)
T TIGR01850       234 GIDKVKVSFTPHLVPMTRGILATIYAK---LKDGSLTEEDLRKLYEEFYADEPFVRVLPKGEG-----EYPSTKAVRGSN  305 (361)
T ss_pred             CCCCEEEEEEEEECCCCCCCEEEEEEE---ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----CCCCEEEEEECC
T ss_conf             448727999863126235320127687---268998889999999997127971798227789-----878614775358


Q ss_pred             EEEEE-EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             07999-9980899769999972221013689999999987238
Q gi|254780294|r  269 KLHLF-FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       269 ~v~Vg-~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                      +|+|| +..|+++++++++|+||||+||||||||||||||||-
T Consensus       306 ~cdIGG~~~d~~~~r~vv~SaIDNLvKGAAGQAvQN~N~m~G~  348 (361)
T TIGR01850       306 FCDIGGFAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMFGF  348 (361)
T ss_pred             CEEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCC
T ss_conf             3887337886578889999852112467999999999863588


No 2  
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00  E-value=0  Score=562.33  Aligned_cols=307  Identities=49%  Similarity=0.843  Sum_probs=285.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861258489822
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      |+||+|+|||||+|.||+|+|.+||.+||..++++++.+...+.+.++++|++|+|+||++|+++++.+.+.|  ++|||
T Consensus         2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~i~~~~~k~~~~~~~~~~~~DvvFlalPh~~s~~~v~~~~~~g--~kVID   79 (314)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDPAARRELLNAADIAILCLPDDAAREAVALIDNPA--TRVID   79 (314)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC--CEEEE
T ss_conf             8269998998856999999997599829999671125575567877506999999999778999999886279--88998


Q ss_pred             CCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHC
Q ss_conf             76303555431100210004776520496077258421133112478888850345565026765123333561000000
Q gi|254780294|r   81 TSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRM  160 (311)
Q Consensus        81 ~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~  160 (311)
                      +|+|||++++|.|++||+|+++++.++++++|||||||+|+++++|+||.+.+++.....++++++||+||||+++.+..
T Consensus        80 LSaDfRl~~~wvYGlPEl~~~~r~~I~~a~~IAnPGCyaTa~iL~L~PL~~~gli~~~~~i~i~a~SG~SGAGk~~~~~~  159 (314)
T PRK11863         80 ASTAHRTAPGWVYGFPELAPGQRERIAAARRVANPGCYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAY  159 (314)
T ss_pred             CCCCCCCCCCCEEECCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             98544579997733650687789998629863279828999999999999768878888469984102566776653234


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHC
Q ss_conf             13444322343322222344444342013321671136887520343320278999986325775448998866542200
Q gi|254780294|r  161 EQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYM  240 (311)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~  240 (311)
                      +.... .....++.+|..+..|+|.||+++.......+.|+||++|+.|||+.|++++...+.+..+.+++++.|.++|+
T Consensus       160 ~~~~~-~~~~~~~~~Y~~~~~HrH~pEI~q~~~~~~~~~F~Phl~p~~RGIl~Tiy~~~~~l~~~~~~~~i~~~y~~~Y~  238 (314)
T PRK11863        160 EAGGP-KGTAPAFRLYGLGLAHKHLPEMQAHAGLARRPIFVPSVGNFRQGMLVTVPLHLDLLPGGPTGEDLHAALADHYA  238 (314)
T ss_pred             CCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHC
T ss_conf             46542-12334531136876757899999985888875231115574760469952246651789999999999999868


Q ss_pred             CCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             1443056027878878986427627996079999980899769999972221013689999999987238
Q gi|254780294|r  241 GQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       241 ~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                      +++||+|++.+..+..+.+.|+.+.|||+|+||+..|++.++++++|++|||+||||||||||||||||.
T Consensus       239 ~epFV~v~~~~~~~~~~~v~~~~v~gtN~~~I~v~~d~~~~~~vv~saIDNL~KGAAGQAVQnmNlm~G~  308 (314)
T PRK11863        239 GEAFVRVAPLEESAALDRLDPEALNGTNRLELFVFGNEEHGQAVLVARLDNLGKGASGAAVQNLNLMLGL  308 (314)
T ss_pred             CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC
T ss_conf             9997899478888765633422348996489999970899999999983145725799999999987199


No 3  
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00  E-value=0  Score=554.32  Aligned_cols=291  Identities=29%  Similarity=0.457  Sum_probs=254.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH------------------HHH-CCCCEEEECCCCHH
Q ss_conf             90799975886789999999862997289999653007860066------------------774-79989999389837
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE------------------DLL-NAADVSILCLPDVA   61 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~------------------~~~-~~~Divf~a~p~~~   61 (311)
                      |+||||+|||||||+||+++|.+||++++.+++|++|+||++.+                  +.+ .++|++|||+|+++
T Consensus         1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~~~~~Divf~alp~~~   80 (345)
T PRK00436          1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEIAAGADVVFLALPHGV   80 (345)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCCEEEECCCHHH
T ss_conf             91999989661889999999980998679999757868973778581103777874764998894269999998898389


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHH-------------------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCC
Q ss_conf             8999999861258489822763035554-------------------311002100047765204960772584211331
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAHRIAP-------------------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGA  122 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~R~~~-------------------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~  122 (311)
                      |++|++++.++|  ++|||+|+||||++                   ++.|++||+|++   .++++++|||||||+|++
T Consensus        81 S~~~~~~~~~~g--~~VID~SsdfR~~~~~~~~~~Y~~~h~~~~l~~~~vYGlPE~n~~---~ik~~~iIANPgC~at~~  155 (345)
T PRK00436         81 SMELAPQLLEAG--VKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNRE---EIKGARLIANPGCYPTAS  155 (345)
T ss_pred             HHHHHHHHHHCC--CEEEECCHHHHCCCCCCHHHCCCCCCCCHHHHHHHEECCHHHHHH---HHHHCCEECCCCCHHHHH
T ss_conf             999999998669--879989701203676432210587778844632220076024366---663255600799478999


Q ss_pred             HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC---CEEEE
Q ss_conf             124788888503455650267651233335610000001344432234332222234444434201332167---11368
Q gi|254780294|r  123 IAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---KTSPM  199 (311)
Q Consensus       123 ~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---~~~~~  199 (311)
                      +++|+||++.++++ ...++++++||+||||+++....+..    ...+++.+|.. ..|+|.||+.+....   ...+.
T Consensus       156 ~laL~PL~~~~li~-~~~iiv~a~sg~SGAGk~~~~~~~~~----e~~~n~~~Y~~-~~HrH~pEi~q~l~~~~~~~~v~  229 (345)
T PRK00436        156 LLALAPLLKAGLID-PDSIIIDAKSGVSGAGRKASEGSLFS----EVNENLRAYGV-GGHRHTPEIEQELSGLAGEVVVS  229 (345)
T ss_pred             HHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCHHHHHH----HHHCCEECCCC-CCCCCCHHHHHHHHHHCCCCEEE
T ss_conf             99999999837866-68469998774453665864000257----77245602546-78787189999987308997189


Q ss_pred             EEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECC
Q ss_conf             87520343320278999986325775448998866542200144305602787887898642762799607999998089
Q gi|254780294|r  200 FLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSE  279 (311)
Q Consensus       200 ~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~  279 (311)
                      |+|+++|+.|||+.|+++.   +..+.+.+++++.|.++|++++||+|++.+     .+|+|+++.|+|.|+||+.+|++
T Consensus       230 ftp~~vPv~rGi~~ti~~~---~~~~~s~~~i~~~l~~~Y~~~pfV~v~~~~-----~~P~~~~v~gtn~~~ig~~~d~~  301 (345)
T PRK00436        230 FTPHLVPMTRGILATIYAR---LKDGVTAEDLRAAYEEFYADEPFVRVLPEG-----QYPETKSVRGSNFCDIGFAVDER  301 (345)
T ss_pred             EEEEECCCCCEEEEEEEEE---ECCCCCHHHHHHHHHHHHCCCCCEEECCCC-----CCCCHHHHCCCCCEEEEEEEECC
T ss_conf             9836637666068999999---579863677889999983689868985899-----99987781698718999998089


Q ss_pred             CCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             9769999972221013689999999987238
Q gi|254780294|r  280 LPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       280 ~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                      ++++|+||++|||+||||||||||||||||.
T Consensus       302 ~~~l~i~s~~DNL~KGAAgqAVQn~Nl~~g~  332 (345)
T PRK00436        302 TGRLVVVSAIDNLVKGAAGQAVQNMNLMFGL  332 (345)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             9989999985033430899999999988099


No 4  
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=522.15  Aligned_cols=292  Identities=34%  Similarity=0.524  Sum_probs=263.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH--------------------HCCCCEEEECCCCH
Q ss_conf             9079997588678999999986299728999965300786006677--------------------47998999938983
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL--------------------LNAADVSILCLPDV   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~--------------------~~~~Divf~a~p~~   60 (311)
                      |.||+|+|||||+|.||+++|.+||.+|+...+|++++|+++++..                    ..+||+||+|+||+
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg   81 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG   81 (349)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCH
T ss_conf             81599977887748999999865997379996316645870687582423534554335774553015688899906863


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHH-------------------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             7899999986125848982276303555-------------------431100210004776520496077258421133
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTAHRIA-------------------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~-------------------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
                      +|+++++.+.++|  ++|||+|.|||+.                   ++|+|++||++.   ++++++++|||||||+|+
T Consensus        82 ~s~~~v~~l~~~g--~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~---e~i~~A~lIAnPGCypTa  156 (349)
T COG0002          82 VSAELVPELLEAG--CKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR---EKIRGAKLIANPGCYPTA  156 (349)
T ss_pred             HHHHHHHHHHHCC--CEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCH---HHHHCCCEEECCCCHHHH
T ss_conf             6889899997479--94998873200577777788627777780133154334731298---888338773679832889


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC----EE
Q ss_conf             11247888885034556502676512333356100000013444322343322222344444342013321671----13
Q gi|254780294|r  122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIK----TS  197 (311)
Q Consensus       122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~----~~  197 (311)
                      ++++|+||.+...+.....++++++||+||||+++....+.++.    .++..+|... .|+|.||+.|.+...    ..
T Consensus       157 ~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~----~~~~~~Y~~~-~HrH~pEi~q~l~~l~~~~~~  231 (349)
T COG0002         157 AILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEV----NDSLRPYGLT-GHRHTPEIEQHLGRLAGRKVP  231 (349)
T ss_pred             HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHH----CCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCC
T ss_conf             99988899876997888864899767467678785300255110----3663335445-667659999986010167676


Q ss_pred             EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEE
Q ss_conf             68875203433202789999863257754489988665422001443056027878878986427627996079999980
Q gi|254780294|r  198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDS  277 (311)
Q Consensus       198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~  277 (311)
                      +.|+||++|+.|||++|+++.+..   ..+.+++++.|.++|++++||+|.+.+     .+|+++.+.|+|+|+||+..|
T Consensus       232 v~FtPhl~p~~RGIl~Ti~~~l~~---~~t~~~i~~~y~~~Y~~epfVrv~~~~-----~~P~~k~V~GsN~cdIgf~~d  303 (349)
T COG0002         232 VIFTPHLGPFVRGILATIYLKLKD---LVTLEELHAAYEEFYAGEPFVRVVPEG-----GYPDTKAVAGSNFCDIGFAVD  303 (349)
T ss_pred             EEEECEECCCCCEEEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCCC-----CCCCHHHHCCCCCEEEEEEEC
T ss_conf             178520666125089998874188---889999999999986799869970688-----999745515886328988875


Q ss_pred             CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             899769999972221013689999999987238
Q gi|254780294|r  278 SELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       278 ~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                      +++++++++|++|||+||||||||||||||||.
T Consensus       304 ~~~~rvvvvsaIDNL~KGAAGQAVQnmNim~G~  336 (349)
T COG0002         304 ERTGRVVVVSAIDNLVKGAAGQAVQNMNIMFGF  336 (349)
T ss_pred             CCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf             878889999970100234788999999987298


No 5  
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=504.55  Aligned_cols=295  Identities=17%  Similarity=0.200  Sum_probs=241.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             907999758867899999998629--972899996530078600------------667747998999938983789999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      |+||||||||||||+||+++|++|  |++++++++|++++|+++            +.+.|.++|++|||+|+++|++|+
T Consensus         2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s~G~~~~~~~~~~~~~~~~~~~~~~~Di~f~a~~~~~s~~~~   81 (348)
T PRK06598          2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRSGGKAPSFGGKTLLVDALDIEDLKGLDIALFSAGGDYSKEVA   81 (348)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEEEECCHHHHHCCCEEEECCCCHHHHHHH
T ss_conf             84799989845999999999986799962499998756689875068955478627855760799999868823568888


Q ss_pred             HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99861258489822763035554311002100047765204960772584211331124788888503455650267651
Q gi|254780294|r   67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAV  146 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~  146 (311)
                      +.+.++|  ++|||+|++|||++++||++||+|++.++..+..++|||||||||+++++|+||++.+++++   ++++++
T Consensus        82 ~~~~~~g--~~VIDlSs~fR~~~~vplvvPEiN~~~i~~~~~~~iIAnPgC~~t~~~laL~PL~k~~~I~~---i~vsty  156 (348)
T PRK06598         82 PKLRAAG--GVVIDNASALRMDPDVPLVVPEVNPDAIKDALKKGIIANPNCTTSLMLMALGPLHDAALIER---VVVSTY  156 (348)
T ss_pred             HHHHHCC--CEEEECCHHHCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCEE---EEEEEE
T ss_conf             9997589--89998864310368843764620789997341368223888199999999998998559513---258788


Q ss_pred             CCCCCCCCCCCHHCCCCCCCCCCC-------------C--CCCCCCCCCCCCCCCCH-------------------HHHC
Q ss_conf             233335610000001344432234-------------3--32222234444434201-------------------3321
Q gi|254780294|r  147 SGYTGGGKKLISRMEQKNMPDTIS-------------S--NHFFYSLDLLHKHLPEI-------------------TQYS  192 (311)
Q Consensus       147 sg~sgaG~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~h~~e~-------------------~~~~  192 (311)
                      ||+||||+++++++..+.......             .  ....+..+..++..|++                   .++.
T Consensus       157 qavSGAG~~~v~eL~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~i~~~~~~g~t~EE~K~~~Et~kIL  236 (348)
T PRK06598        157 QAVSGAGAAGMRELLTQMGALLAHVADELADPASAISDELPPDKFGVPIAFNLIPWIDKFLDNGQTKEEWKMVAETNKIL  236 (348)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEE
T ss_conf             52001568689999999998750443112453011025667443677503101565686455886889998888764121


Q ss_pred             C-CCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEE
Q ss_conf             6-711368875203433202789999863257754489988665422001443056027878878986427627996079
Q gi|254780294|r  193 L-IKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLH  271 (311)
Q Consensus       193 ~-~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~  271 (311)
                      . ....+.+||+++|+.+||..++++.+.   ...+.+++++.|..++.      +.+.+..+...+|+|.++.|+|.|+
T Consensus       237 ~~~~l~Vs~T~vRVPv~~Gh~~ti~v~~~---~~i~~~~i~~~l~~~~~------v~~~~~~~~~~~p~p~~v~g~~~v~  307 (348)
T PRK06598        237 GDPDIPVDGTCVRVPVFRGHSEAVTIELK---KDVSVEEAEEILNEAPG------VVPNDKEATMRYLTPAAVTGTLAVP  307 (348)
T ss_pred             CCCCCCEEEEEEECCEECCEEEEEEEEEE---CCCCHHHHHHHHHCCCC------CEEECCCCCCCCCCHHHHCCCCCEE
T ss_conf             68998356799983312217889999981---26888999999970899------5892276446899707747987679


Q ss_pred             EEEEEEC--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             9999808--9976999997222101368999999998723
Q gi|254780294|r  272 LFFFDSS--ELPYINIIAVFDNLGKGASGAAIQNMDLLLS  309 (311)
Q Consensus       272 Vg~~~~~--~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g  309 (311)
                      |||+|.+  ..+.+++|+++|||+||||||||||||||+-
T Consensus       308 VGRiR~d~~~~~~l~l~~v~DNL~KGAA~~AVQ~~eil~~  347 (348)
T PRK06598        308 VGRIRKDNMGPNGLSLFTVGDQLLKGAAENLVQIAEILLE  347 (348)
T ss_pred             EEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHC
T ss_conf             9977874889998999998234478589999999999864


No 6  
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor.   This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=100.00  E-value=0  Score=512.47  Aligned_cols=292  Identities=17%  Similarity=0.240  Sum_probs=242.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCC------------HH-HHCC--CCEEEECCCCHHHHHH
Q ss_conf             7999758867899999998629--9728999965300786006------------67-7479--9899993898378999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRYR------------ED-LLNA--ADVSILCLPDVASLEI   65 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~~------------~~-~~~~--~Divf~a~p~~~s~~~   65 (311)
                      +||||||||.|||+|+++|++|  |.-+++++||++|+|++++            .+ .|++  +||+|||+|..+|++|
T Consensus         1 ~vAiVGATG~VGq~~lk~LeeR~FP~~~~~~~AS~RS~G~~~~F~gke~~v~~~~~~n~F~gekidIAlFSAGgsvSke~   80 (350)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASERSAGRKVTFKGKELEVEEAKKENSFEGEKIDIALFSAGGSVSKEF   80 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHH
T ss_conf             94789626747999987641367877556441056788857851275366010100148887703345651531334888


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99986125848982276303555431100210004776520496077258421133112478888850345565026765
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINA  145 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~  145 (311)
                      +|++.+.|  +.||||||+||||+||||+|||||...+...+..+|||||||+|++|+.+|+||++..+|++   ++++|
T Consensus        81 aP~a~k~g--~~VIDntS~fR~D~dVPLVVPEVN~~~~~~~~~kgIIANPNCstIqmv~~LkPl~~~~~ikr---VvVST  155 (350)
T TIGR01296        81 APKAAKAG--VIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNKKGIIANPNCSTIQMVVVLKPLHDEAKIKR---VVVST  155 (350)
T ss_pred             HHHHHCCC--CEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCEEE---EEEEE
T ss_conf             78886087--57981762000578986344377847763478888145886007779884046563067458---99972


Q ss_pred             ECCCCCCCCCCCHHCCCCCC-----------------------CCCCCCCCCCCCCCCC----------CCCCCCHHHHC
Q ss_conf             12333356100000013444-----------------------3223433222223444----------44342013321
Q gi|254780294|r  146 VSGYTGGGKKLISRMEQKNM-----------------------PDTISSNHFFYSLDLL----------HKHLPEITQYS  192 (311)
Q Consensus       146 ~sg~sgaG~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----------~~h~~e~~~~~  192 (311)
                      ||++||||.+++++|.++..                       +..+..|..++.-.+.          .+...|..++.
T Consensus       156 YQAVSGAG~~g~~eL~nQtka~~~~~E~~p~i~~~~~~~a~kf~~qIAFN~~P~Id~f~~dGsGYT~EE~Km~~Et~KIm  235 (350)
T TIGR01296       156 YQAVSGAGNKGVEELKNQTKAVLEGKEKEPEIDALEVLKAKKFPYQIAFNAIPHIDKFKDDGSGYTKEETKMLFETRKIM  235 (350)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             20035427999999899999985245888555543068888826750300001047412287866806678898634323


Q ss_pred             C-CCEEEEEEEECCCCCCEEEEEEEEEEECCCC-CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEE
Q ss_conf             6-7113688752034332027899998632577-5448998866542200144305602787887898642762799607
Q gi|254780294|r  193 L-IKTSPMFLPSVGRFPQGIAIQISLDMERLSW-KTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKL  270 (311)
Q Consensus       193 ~-~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v  270 (311)
                      + ...++..||.|+|+++||..+|++.+   .+ ....+++++.++    +.+.|.++  |++.+..||||..+.|+|.+
T Consensus       236 g~~d~~vSaTCVRvPVf~GHS~S~~iEf---~~d~~~~e~~~E~Lk----~ApGV~~~--D~P~~~~Yp~P~~A~G~D~V  306 (350)
T TIGR01296       236 GIPDLKVSATCVRVPVFTGHSESVNIEF---EKDEISPEDVREVLK----NAPGVVVI--DDPSQNLYPTPLEAVGEDEV  306 (350)
T ss_pred             CCCCCCEEEEEEECCCHHCCHHHHHHHH---CCCCCCHHHHHHHHC----CCCEEEEE--ECCCCCCCCCCHHEECCCCE
T ss_conf             8877445157887411111123210011---168878889999734----79867998--76888778883101025715


Q ss_pred             EEEEEEEC----CCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             99999808----997699999722210136899999999872
Q gi|254780294|r  271 HLFFFDSS----ELPYINIIAVFDNLGKGASGAAIQNMDLLL  308 (311)
Q Consensus       271 ~Vg~~~~~----~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~  308 (311)
                      +|||+|.|    +.+.+.+|++.||||||||+||||+||+.-
T Consensus       307 fVGRIRkDPGl~~~~gl~lwvv~DNLRKGAA~N~vqIAE~L~  348 (350)
T TIGR01296       307 FVGRIRKDPGLSDENGLHLWVVADNLRKGAALNSVQIAELLI  348 (350)
T ss_pred             EEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             675444478886678325899622124678888999999863


No 7  
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=494.97  Aligned_cols=288  Identities=17%  Similarity=0.194  Sum_probs=236.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC------------------------HHHHCCCCEEEE
Q ss_conf             907999758867899999998629972899996-5300786006------------------------677479989999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR------------------------EDLLNAADVSIL   55 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~------------------------~~~~~~~Divf~   55 (311)
                      |+||||||||||||+||+|+|.+||++|+..++ |++++|+++.                        +..+.++|++|+
T Consensus         3 kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~DvvF~   82 (350)
T PRK08664          3 KLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPVDVDDVDIVFS   82 (350)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEE
T ss_conf             77799989842999999999970999668999965533788415520322346676444650798688457438999999


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHH--------HCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             3898378999999861258489822763035554311002100047765--------20496077258421133112478
Q gi|254780294|r   56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKE--------KIRSARYITNPGCYATGAIAILR  127 (311)
Q Consensus        56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~--------~~~~~~iIanPnC~~t~~~laL~  127 (311)
                      |+||++|+++++.+.++|  ++|||+|+|||+++++|+++||+|+++..        .++++++|||||||+|+++++|+
T Consensus        83 AlPhg~s~~~~~~l~~~g--~~VIDlSadfRl~~~~p~~~pE~n~~~~~~~~~~~~~~~~~~~lIanPGCy~Ta~~LaL~  160 (350)
T PRK08664         83 ALPSDVAAEVEEEFAKAG--KPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLTLALK  160 (350)
T ss_pred             CCCCHHHHHHHHHHHHCC--CEEEECCHHHCCCCCCCEECHHHCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH
T ss_conf             898269999999998779--889978622035578844542038887734688776413466578779718889999889


Q ss_pred             HHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC---------CEEE
Q ss_conf             8888503455650267651233335610000001344432234332222234444434201332167---------1136
Q gi|254780294|r  128 PLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---------KTSP  198 (311)
Q Consensus       128 PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---------~~~~  198 (311)
                      ||++.. +   ..++++++||+||||+++.+.+       +..+|..+|.....+++..|+.++...         ..++
T Consensus       161 PL~~~~-~---~~i~i~~~sgvSGAGk~~~~~~-------e~~~N~~py~~~~~~~~~~E~~~il~~~~~~~~~~~~~~v  229 (350)
T PRK08664        161 PLMDFG-I---ERVHVTTMQAISGAGYPGVPSM-------DILDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPADFKI  229 (350)
T ss_pred             HHHHCC-C---CEEEEEECCCCCCCCCCCCCCH-------HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE
T ss_conf             999859-9---7599994443453661457424-------5654853556764321678999985522235444568608


Q ss_pred             EEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC----------CCCCEEECCCCCCCCCCCCHHH---HC
Q ss_conf             8875203433202789999863257754489988665422001----------4430560278788789864276---27
Q gi|254780294|r  199 MFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG----------QNIVSVVPLEESRKIKTIACEM---MS  265 (311)
Q Consensus       199 ~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~~~~~~~~~~p~~~~---~~  265 (311)
                      .|+||++|+.|||+.|+++.+.   .....+++++.|.++|..          ++|+++.+.++     +|++..   ..
T Consensus       230 ~ftphlvP~~RGil~Tiyv~l~---~~~~~~~i~~~~~~~~~~~~~~~l~~~p~~~i~v~~~~~-----~P~~~~~~~~~  301 (350)
T PRK08664        230 SATCHRVPVIDGHTEAVFVTFK---EKVDPEEIIEALENFKGLPQELGLPTAPEKPIIVREEPD-----RPQPRLDRDAG  301 (350)
T ss_pred             EEEEEECCCCCCEEEEEEEEEC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC-----CCCCEEEEECC
T ss_conf             9998982530558999999969---999999999999866288632356667887489807898-----77521543158


Q ss_pred             CCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             99607999998089976999997222101368999999998723
Q gi|254780294|r  266 GNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLS  309 (311)
Q Consensus       266 g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g  309 (311)
                      +...|.||+.+++..+++.+|+++|||+||||||||||||||..
T Consensus       302 ~~~~v~vg~~~~~~~~~l~~~s~iDNL~KGAAGQAVQnmNlM~~  345 (350)
T PRK08664        302 NGMAVSVGRLREDGIFDIKFVVLGHNTVRGAAGASVLNAELLKK  345 (350)
T ss_pred             CCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             97169997788079982999999357567699999999999998


No 8  
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=480.64  Aligned_cols=292  Identities=15%  Similarity=0.185  Sum_probs=234.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE---EEEEEECCCCCCCCCC------------HHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             07999758867899999998629972---8999965300786006------------67747998999938983789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL---CLLSIPCEERHNLRYR------------EDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~---~l~~l~s~~~ag~~~~------------~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      +|||||||||||||+|+++|++||+|   ++++++|++|+||++.            ++.|+++|++|||+|+++|++|+
T Consensus         6 ~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~~~~~~~~v~~~~~~~~~~~Divf~a~~~~~s~~~~   85 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV   85 (347)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCEEEEEECCHHHHHCCCEEEECCCHHHHHHHH
T ss_conf             77999988039999999999727898751079986587799762689927899857844651697899768578899999


Q ss_pred             HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE
Q ss_conf             99861258489822763035554311002100047765204960772584211331124788888503455650267651
Q gi|254780294|r   67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAV  146 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~  146 (311)
                      |++.++|  ++|||||++|||++++||++||||+++++.  .+++||||||+||+++++|+||++.+++++   ++++++
T Consensus        86 ~~~~~~G--~~VID~Ssa~R~~~~vPlvvPEvN~~~l~~--~~~iIanPnC~tt~l~laL~PL~~~~~i~~---v~vst~  158 (347)
T PRK06728         86 NQAVSSG--AIVIDNTSEYRMAHDVPLVVPEVNAHTLKE--HKGIIAVPNCSALQMVTALQPIRKVFGLER---IIVSTY  158 (347)
T ss_pred             HHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHHC--CCCEEECCCHHHHHHHHHHHHHHHHHCCCE---EEEEEE
T ss_conf             9998589--699989756568999745887529667623--278377898088899999999998537661---235665


Q ss_pred             CCCCCCCCCCCHHCCCCCCCC----CCCCCCCCCC-----CCCCCCCCC-------------------CHHHHCC-CCEE
Q ss_conf             233335610000001344432----2343322222-----344444342-------------------0133216-7113
Q gi|254780294|r  147 SGYTGGGKKLISRMEQKNMPD----TISSNHFFYS-----LDLLHKHLP-------------------EITQYSL-IKTS  197 (311)
Q Consensus       147 sg~sgaG~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~h~~-------------------e~~~~~~-~~~~  197 (311)
                      |++||+|+.+++++..+....    ....+..++.     .+..++..|                   |..++.. ...+
T Consensus       159 QavSGaG~~gv~eL~~q~~~~l~g~~~~~~~~p~~~~~~~~piafNviP~i~~~~~~g~t~EE~k~~~E~~kIL~~~~l~  238 (347)
T PRK06728        159 QAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLK  238 (347)
T ss_pred             EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             30022567789999999998746886654445655554467303320565575566895899988877777516788775


Q ss_pred             EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEE
Q ss_conf             68875203433202789999863257754489988665422001443056027878878986427627996079999980
Q gi|254780294|r  198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDS  277 (311)
Q Consensus       198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~  277 (311)
                      +.+||+++|+.+||..++++.+   ....+.+++++.|.+    .+++.+.  ++..+..||+|..+.|++.++|||+|.
T Consensus       239 is~tcvRVPv~~GH~~sv~v~~---~~~~~~eei~~~l~~----~~~v~~~--d~p~~~~~p~p~~~~g~~~v~VGRiR~  309 (347)
T PRK06728        239 MAATCVRVPVISGHSESVYIEL---EKEATVAEIKEVLFD----APGVILQ--DNPSEQLYPMPLYAEGKIDTFVGRIRK  309 (347)
T ss_pred             EEEEEEEECCCCCEEEEEEEEE---CCCCCHHHHHHHHHH----CCCCEEC--CCCCCCCCCCCCCCCCCCCEEEEEEEE
T ss_conf             0569999575052823689998---577999999999974----8998851--486546898872116998647764165


Q ss_pred             C--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             8--9976999997222101368999999998723
Q gi|254780294|r  278 S--ELPYINIIAVFDNLGKGASGAAIQNMDLLLS  309 (311)
Q Consensus       278 ~--~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g  309 (311)
                      +  ..+.+++|++.|||+||||||||||||||..
T Consensus       310 d~~~~~~l~~~~v~DNl~kGAA~~AVq~aE~l~~  343 (347)
T PRK06728        310 DPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVE  343 (347)
T ss_pred             CCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             5899996999999735689899999999999997


No 9  
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00  E-value=0  Score=472.64  Aligned_cols=290  Identities=15%  Similarity=0.117  Sum_probs=238.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             07999758867899999998629--972899996530078600------------6677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      +|||||||||||||+|+++|++|  |++++++++|++|+||++            ++..|+++|++|||+|+++|++|++
T Consensus         5 ~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~i~~~~~~l~v~~~~~~~~~~vDlvffa~~~~vs~~~a~   84 (336)
T PRK05671          5 LDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESAGHSVPFAGKNLRVREVDSFDFSQVKLAFFAAGAAVSRSFAE   84 (336)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHH
T ss_conf             87999998649999999998636998026999987656898754689678999788244245988998688166799899


Q ss_pred             HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             98612584898227630355543110021000477652049607725842113311247888885034556502676512
Q gi|254780294|r   68 LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVS  147 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~s  147 (311)
                      ++.++|  ++|||||++||++ ++||++||+|+++++.++++++|+||||+||+++++|+||++.+++++   ++++++|
T Consensus        85 ~~~~aG--~~VID~Ss~fr~~-~vPlvvPEvN~~~l~~~~~~~iVanPnC~t~~l~laL~Pl~~~~~l~~---i~v~t~q  158 (336)
T PRK05671         85 KALAAG--CSVIDLSGALPSA-QAPNVVPEANAERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQR---VQVTACL  158 (336)
T ss_pred             HHHHCC--CEEEECCCCCCCC-CCCEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHCCHHHHHHHCCEE---EEEEEEE
T ss_conf             999769--9799562013303-797774042999996075687786786066666630166898709438---9998640


Q ss_pred             CCCCCCCCCCHHCCCCCC-------------CCCCCCCCCCCCCCCCC-CC-------CCCHHHHCC-CCEEEEEEEECC
Q ss_conf             333356100000013444-------------32234332222234444-43-------420133216-711368875203
Q gi|254780294|r  148 GYTGGGKKLISRMEQKNM-------------PDTISSNHFFYSLDLLH-KH-------LPEITQYSL-IKTSPMFLPSVG  205 (311)
Q Consensus       148 g~sgaG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~h-------~~e~~~~~~-~~~~~~~~~~~~  205 (311)
                      ++||+|+++.+++..+..             ......|..++...+.. .|       ..|..++.. ...++.++|+++
T Consensus       159 avSGaG~~gv~~L~~qt~~lln~~~~~~~~~~~~iafNviP~ig~~~~~g~~~eE~k~~~e~~kil~~~~~~vs~t~vrV  238 (336)
T PRK05671        159 AVSALGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDEQGHTALERRLVAELRQLLGLPELKVSVTCIQV  238 (336)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC
T ss_conf             50107765689999999987268877765554010043343457556678769998777888776348887734688972


Q ss_pred             CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHH-HHCCCCEEEEEEEEEC--CCCE
Q ss_conf             433202789999863257754489988665422001443056027878878986427-6279960799999808--9976
Q gi|254780294|r  206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACE-MMSGNDKLHLFFFDSS--ELPY  282 (311)
Q Consensus       206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~-~~~g~n~v~Vg~~~~~--~~~~  282 (311)
                      |+.+||..++++.+   ..+.+.+++.+.++.    .+++.+.+.+     .+|+|. ++.|+|.|+|||+|.+  ..+.
T Consensus       239 PV~~Ghs~sv~v~~---~~~~~~~~i~~~l~~----~~~v~~~~~~-----~~P~p~~d~~g~~~v~VGRiR~~~~~~~~  306 (336)
T PRK05671        239 PVFFGDSFSVTLQS---AEPVDLAAVNAALEA----ADGIELVEAG-----DYPTPVGDAVGQDVVYVGRVRAGVDDPRQ  306 (336)
T ss_pred             CEECCEEEEEEEEE---CCCCCHHHHHHHHHC----CCCCEEECCC-----CCCCCCCCCCCCCCEEEEEEECCCCCCCE
T ss_conf             30311899999995---798869999999855----9997994889-----99885210279987689861525898997


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             999997222101368999999998723
Q gi|254780294|r  283 INIIAVFDNLGKGASGAAIQNMDLLLS  309 (311)
Q Consensus       283 ~~v~s~~DNL~KGAAgnAVQn~nlm~g  309 (311)
                      +++|+++|||+||||||||||+|+|..
T Consensus       307 l~~~~v~DNl~kGAA~~AVq~AE~l~k  333 (336)
T PRK05671        307 LNLWLTSDNVRKGAALNAVQVGELLIK  333 (336)
T ss_pred             EEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999821788699999999999998


No 10 
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=465.58  Aligned_cols=290  Identities=16%  Similarity=0.127  Sum_probs=237.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             07999758867899999998629--972899996530078600------------6677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      +|||||||||+|||+|+++|++|  |++++++++|++|+||++            ++..|.++|++|||+|.++|++|+|
T Consensus         5 ~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~SaGk~i~~~~~~~~v~~~~~~~~~~~di~ff~a~~~~s~~~~~   84 (337)
T PRK08040          5 WNIALLGATGAVGEALLETLAERQFPVGEIYALAREESAGETLRFGGKSITVQDAAEFDWTQAQLAFFVAGKEASAAYAE   84 (337)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHH
T ss_conf             87999888508899999999717998135999988888997777899188999777033246988999177178888899


Q ss_pred             HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC
Q ss_conf             98612584898227630355543110021000477652049607725842113311247888885034556502676512
Q gi|254780294|r   68 LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVS  147 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~s  147 (311)
                      .+.++|  +.||||||+|||+++|||++||||+++++..++++||+||||+|++++++|+||++.++++++.   +.|||
T Consensus        85 ~a~~aG--~~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~~~~~IianPNCsT~~l~~aL~pL~~~~gi~rv~---vsTyQ  159 (337)
T PRK08040         85 EATNAG--CLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIS---VTNLI  159 (337)
T ss_pred             HHHHCC--CEEEECCHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEE---EEEEE
T ss_conf             998489--5999796131058887421674087888743249825457708888898778888630645899---99864


Q ss_pred             CCCCCCCCCCHHCCCCCC--------------CCCCCCCCCCCCCCCCCCCC-------CCHHHHC-CCCEEEEEEEECC
Q ss_conf             333356100000013444--------------32234332222234444434-------2013321-6711368875203
Q gi|254780294|r  148 GYTGGGKKLISRMEQKNM--------------PDTISSNHFFYSLDLLHKHL-------PEITQYS-LIKTSPMFLPSVG  205 (311)
Q Consensus       148 g~sgaG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~h~-------~e~~~~~-~~~~~~~~~~~~~  205 (311)
                      ++||+|+++++++..+..              +..+..|..++... .....       .|..+++ ....++..||.++
T Consensus       160 AvSGaG~~gv~eL~~qt~~ll~g~~~~~~~~f~~qiafNviP~I~~-e~g~t~EE~K~~~EtrKIL~~~~i~VsaTcvRV  238 (337)
T PRK08040        160 SASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPD-SEGSVREERRIVDEVRKILQDEGLMISASVVQS  238 (337)
T ss_pred             ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf             0410358899999999999854998876545775332565674478-787429899998875064678887641079974


Q ss_pred             CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHH-HHCCCCEEEEEEEEEC--CCCE
Q ss_conf             433202789999863257754489988665422001443056027878878986427-6279960799999808--9976
Q gi|254780294|r  206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACE-MMSGNDKLHLFFFDSS--ELPY  282 (311)
Q Consensus       206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~-~~~g~n~v~Vg~~~~~--~~~~  282 (311)
                      |+.+||..++++.+.   .....+++.+.+...    +.+.+..     +..||+|. ++.|++.++|||+|.+  ..+.
T Consensus       239 PV~~GHs~sV~ve~~---~~~~~e~~~~~l~~~----~~v~~~d-----e~~~P~p~~da~g~~~v~VGRiR~d~~~~~~  306 (337)
T PRK08040        239 PVFYGHAQMVHFEAL---RPLAAEEARDAFAQG----EDIVLSE-----ENDYPTQVGDASGNPHLSIGCVRNDYGMPEQ  306 (337)
T ss_pred             CEECCEEEEEEEEEC---CCCCHHHHHHHHHCC----CCCEEEC-----CCCCCCCCHHCCCCCCEEEEEEECCCCCCCC
T ss_conf             403117889999987---879999999998608----9979827-----9999874000379987698824766888892


Q ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHC
Q ss_conf             999997222101368999999998723
Q gi|254780294|r  283 INIIAVFDNLGKGASGAAIQNMDLLLS  309 (311)
Q Consensus       283 ~~v~s~~DNL~KGAAgnAVQn~nlm~g  309 (311)
                      +++|++.||||||||+||||++|+|..
T Consensus       307 l~~w~v~DNlrkGAA~naVqiaE~Lv~  333 (337)
T PRK08040        307 LQFWSVADNVRFGGALMAVKIAEKLVQ  333 (337)
T ss_pred             EEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf             899999726888699999999999998


No 11 
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor.   This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=100.00  E-value=0  Score=446.71  Aligned_cols=289  Identities=19%  Similarity=0.212  Sum_probs=239.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEE-ECCCCCCCCCCHH-------------------------H-----HCC
Q ss_conf             079997588678999999986299-7289999-6530078600667-------------------------7-----479
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSI-PCEERHNLRYRED-------------------------L-----LNA   49 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l-~s~~~ag~~~~~~-------------------------~-----~~~   49 (311)
                      .|||+|||||+|||.|++||++|| ||+|..+ ||++|+||+|.|.                         .     -++
T Consensus         1 ~~VavLGaTG~VGq~f~~lL~~HPr~Fe~~~v~AS~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~~d   80 (358)
T TIGR00978         1 VRVAVLGATGLVGQKFVKLLEKHPRYFELAKVVASERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDHKD   80 (358)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECCCC
T ss_conf             96899706554689999997526981228898836865576744543012123685843234765413474335661798


Q ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCC--------EEEECCCCCCCC
Q ss_conf             989999389837899999986125848982276303555431100210004776520496--------077258421133
Q gi|254780294|r   50 ADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSA--------RYITNPGCYATG  121 (311)
Q Consensus        50 ~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~--------~iIanPnC~~t~  121 (311)
                      +|+||+|||+++|++.+++++++|  ..|++|||+|||||||||++||||++|++.++.|        .||+||||+|+.
T Consensus        81 VD~vfSALp~~~A~~~E~~la~~G--~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t~~  158 (358)
T TIGR00978        81 VDIVFSALPSEVAEEVEPKLAEEG--IIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTTAG  158 (358)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHHHH
T ss_conf             269981499799999999998569--889876847788888677833356147999985400168861799576167887


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-CC------
Q ss_conf             11247888885034556502676512333356100000013444322343322222344444342013321-67------
Q gi|254780294|r  122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYS-LI------  194 (311)
Q Consensus       122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~-~~------  194 (311)
                      +.|+|+||.+.+.++++.++|+||+   ||||+.|...++       +..|..||..+++.+...|..+++ +.      
T Consensus       159 lTl~LkPl~d~~~~~~V~v~TmQAv---SGAGY~GVp~~~-------I~dN~iP~I~GEE~KIe~E~~KilsGkl~~g~~  228 (358)
T TIGR00978       159 LTLALKPLIDAFGIKKVIVTTMQAV---SGAGYPGVPSMD-------ILDNVIPHIGGEEEKIERETLKILSGKLENGKI  228 (358)
T ss_pred             HHHHHHHHHHCCCCCEEEEEEECCH---HCCCCCCCCHHH-------HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             7610134643058456999872000---148888875455-------533616550633589876213333440038846


Q ss_pred             ---CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC----------CCCCEEECCCCCCCCCCCCH
Q ss_conf             ---11368875203433202789999863257754489988665422001----------44305602787887898642
Q gi|254780294|r  195 ---KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG----------QNIVSVVPLEESRKIKTIAC  261 (311)
Q Consensus       195 ---~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~~~~~~~~~~p~~  261 (311)
                         ...+..+++|+|+..||+.+|++.   +....+.+|+...|++|...          ++-+.+...+|.||++   .
T Consensus       229 ~PA~~~~~at~~RVPV~~GHt~~v~v~---~~~~~d~~EI~~~~~~f~~~Pq~l~lP~~P~~p~~~~d~edrPQPr---l  302 (358)
T TIGR00978       229 EPAEFEVSATTTRVPVLDGHTESVHVE---FDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPR---L  302 (358)
T ss_pred             EEECCEEEEEEEECCCCCCCEEEEEEE---ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCH---H
T ss_conf             420440689987444111646999998---6687798999999984067764257798869537987588678504---4


Q ss_pred             HHH------CCCCEEEEEEEEECCC--CEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             762------7996079999980899--7699999722210136899999999872
Q gi|254780294|r  262 EMM------SGNDKLHLFFFDSSEL--PYINIIAVFDNLGKGASGAAIQNMDLLL  308 (311)
Q Consensus       262 ~~~------~g~n~v~Vg~~~~~~~--~~~~v~s~~DNL~KGAAgnAVQn~nlm~  308 (311)
                      +..      .+-..|.|||+|.+..  +.+.++..+|||+|||||.++.|||||+
T Consensus       303 D~~nGGsa~~~GM~V~vGRlr~~~~f~~~l~~VVLghNLVRGAAG~~lLnaEl~~  357 (358)
T TIGR00978       303 DRDNGGSAAGKGMAVTVGRLREDSGFRGSLKYVVLGHNLVRGAAGATLLNAELAY  357 (358)
T ss_pred             HHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf             2025862126896789753643435555113799723312588899999999860


No 12 
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00  E-value=0  Score=441.34  Aligned_cols=294  Identities=17%  Similarity=0.157  Sum_probs=237.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHC-CCCEE-EEEEECCCCCCCCCC---------------HHHHCCCCEEEECCCCHHHH
Q ss_conf             90799975886789999999862-99728-999965300786006---------------67747998999938983789
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQ-RKDLC-LLSIPCEERHNLRYR---------------EDLLNAADVSILCLPDVASL   63 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~-hp~~~-l~~l~s~~~ag~~~~---------------~~~~~~~Divf~a~p~~~s~   63 (311)
                      |+||||+||||+||++|+++|++ ||+++ +..++|.+|+|+++-               ...++++|++|||+|.++|+
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~   80 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK   80 (334)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH
T ss_conf             91899994235589999999875399840578885231157716010675035762113410012499999917668789


Q ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCE-EEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             99999861258489822763035554311002100047765204960-77258421133112478888850345565026
Q gi|254780294|r   64 EIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSAR-YITNPGCYATGAIAILRPLRKAKLLPDRYPIT  142 (311)
Q Consensus        64 ~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~-iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~  142 (311)
                      +|+|+++++|  +.||||||+|||++||||+|||||++++...++.+ ||+||||+|++++++|+||++.++++++.   
T Consensus        81 ~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~---  155 (334)
T COG0136          81 EVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVV---  155 (334)
T ss_pred             HHHHHHHHCC--CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEE---
T ss_conf             9999999769--88996873111589987765886989997454179789889718999999889887513810899---


Q ss_pred             EEEECCCCCCCCCCCHHCCCCCC----C-------CCCCCCCCCCCCCC--------CCCCCCCHHHHCC-CCEEEEEEE
Q ss_conf             76512333356100000013444----3-------22343322222344--------4443420133216-711368875
Q gi|254780294|r  143 INAVSGYTGGGKKLISRMEQKNM----P-------DTISSNHFFYSLDL--------LHKHLPEITQYSL-IKTSPMFLP  202 (311)
Q Consensus       143 ~~~~sg~sgaG~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~--------~~~h~~e~~~~~~-~~~~~~~~~  202 (311)
                      +.|||++||+|++++.++-.+..    .       .....|..++...+        +-+...|..++.+ ...++..+|
T Consensus       156 VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsatc  235 (334)
T COG0136         156 VSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATC  235 (334)
T ss_pred             EEEEEHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99750112268101566898874313676556656643331013577645577518999988999987188988257899


Q ss_pred             ECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEEC--CC
Q ss_conf             2034332027899998632577544899886654220014430560278788789864276279960799999808--99
Q gi|254780294|r  203 SVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSS--EL  280 (311)
Q Consensus       203 ~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~--~~  280 (311)
                      +++|+.+||...+++.+.   .....+++.+.+   ....+.+.+.+.++   ..+.+|.+..|++.++|||+|.+  ..
T Consensus       236 vRVPV~~GHse~v~ve~~---~~~~~~e~~~~~---l~~ap~v~v~~~~~---~~P~~~~d~~g~~~v~VGRiR~d~~~~  306 (334)
T COG0136         236 VRVPVFYGHSEAVTVEFK---KDVDPEEIREEL---LPSAPGVVVVDNPE---DRPQTPLDATGGDEVSVGRIRKDLSGP  306 (334)
T ss_pred             EECCEECCCCEEEEEEEC---CCCCHHHHHHHH---HCCCCCCEEEECCC---CCCCCHHHHCCCCCEEEEEEEECCCCC
T ss_conf             972416152067899856---989989999997---53189968986776---686583663489855776766347888


Q ss_pred             CEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf             7699999722210136899999999872
Q gi|254780294|r  281 PYINIIAVFDNLGKGASGAAIQNMDLLL  308 (311)
Q Consensus       281 ~~~~v~s~~DNL~KGAAgnAVQn~nlm~  308 (311)
                      +.+.+|+++||||||||+|+||+||+.+
T Consensus       307 ~~l~~~~v~dNl~~GAA~~av~iaE~L~  334 (334)
T COG0136         307 EGLKLWVVGDNLRKGAALNAVLIAELLL  334 (334)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_conf             7479999860113511889999988659


No 13 
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00  E-value=0  Score=437.80  Aligned_cols=288  Identities=12%  Similarity=0.086  Sum_probs=221.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCC-CCCCCC------------CHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             907999758867899999998629--972899996530-078600------------66774799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEE-RHNLRY------------REDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~-~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      ++|||| ||||.||++|+++|++|  |.-+|++|+|++ ++|+++            .+..|.++|++|| ++.++|++|
T Consensus         4 ~~niAI-GATGaVG~~~l~iLeer~fPv~~L~llas~~~s~~~~i~f~g~~v~~~~~~~f~~~~vdi~ff-Ag~~~s~~~   81 (323)
T PRK06901          4 TLNIAI-AAEFELSEKIVEALEESDLEISSISIVEIEPFGEEQGIRFNNKAVEQIAPDEVEWADFNYVFF-AGKLEQVEH   81 (323)
T ss_pred             CCCEEE-ECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECHHHCCCCCCCEEEE-CCCHHHHHH
T ss_conf             641899-766689999999999759994608777632667885799899899995121356324889998-582899999


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             99986125848982276303555431100210004776520496077258421133112478888850345565026765
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINA  145 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~  145 (311)
                      +|.+.++|  |+||||||+||||+++||+|||||++.++.+++.+|||||||+|++++++|+|||+.++|++   ++++|
T Consensus        82 ~p~A~~aG--~vVIDnSSafRmd~dvPLVVPEVN~~~l~~~~~~~IIANPNCsTiqlvvaL~PLh~~~~ikr---vvvsT  156 (323)
T PRK06901         82 LAQAAEAG--CIVIDMLGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLNQ---IFVTS  156 (323)
T ss_pred             HHHHHHCC--CEEEECCHHHHCCCCCCEECCCCCHHHHHCCHHCCEEECCCHHHHHHHHHHHHHHHHHCCCE---EEEEE
T ss_conf             99999889--89998975651789986480674999985131179888998289999998899999719778---99986


Q ss_pred             ECCCCCCCCCCCHHCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             12333356100000013444322-----------3433222223444443420133216711368875203433202789
Q gi|254780294|r  146 VSGYTGGGKKLISRMEQKNMPDT-----------ISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQ  214 (311)
Q Consensus       146 ~sg~sgaG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~  214 (311)
                      ||++||+|+++++++..+.....           +..|..+.   ..-+...|..++......+..|+.++|+++||...
T Consensus       157 YQaVSGaG~~gv~EL~~Qt~~~lng~~~~~~~~qiAFN~iP~---ee~k~~~Et~KIl~~~~~vsaT~VRVPV~~gHSes  233 (323)
T PRK06901        157 LLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPA---QAQNLELQLQKIFPQLENATFHSIQVPVFYGLAQM  233 (323)
T ss_pred             EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCC---CCCCCHHHHHHHCCCCCCCEEEEEEEEEEEEEEEE
T ss_conf             200455418899999999999736999987887433556583---01034188887217876630101882034238899


Q ss_pred             EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEEC--CCCEEEEEEEECCC
Q ss_conf             9998632577544899886654220014430560278788789864276279960799999808--99769999972221
Q gi|254780294|r  215 ISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSS--ELPYINIIAVFDNL  292 (311)
Q Consensus       215 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~--~~~~~~v~s~~DNL  292 (311)
                      |++.+..   +.+.++++..+..    .+.+.+.  ++....+.+......+.+.+.+ |+|.+  ..+.+.+|++.|||
T Consensus       234 V~ve~~~---~~~~~~~~~~l~~----~~gv~~~--~~~~~~p~~~~~~~~~~~~~~~-rir~d~~~~ngl~lWvvaDNl  303 (323)
T PRK06901        234 VTALSDY---DLDIESILAEWQQ----NNLLRYH--EEKLITPVLNGENENGEESVKL-HISQLSAVENGVQFWSVADEQ  303 (323)
T ss_pred             EEEEECC---CCCHHHHHHHHCC----CCCEEEC--CCCCCCCCCCCCCCCCCCEEEE-ECCCCCCCCCEEEEEEEECCH
T ss_conf             9999789---8999999998606----9985874--6888888465001688555999-834789989979999977017


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             0136899999999872
Q gi|254780294|r  293 GKGASGAAIQNMDLLL  308 (311)
Q Consensus       293 ~KGAAgnAVQn~nlm~  308 (311)
                      |||||+||||++|++.
T Consensus       304 RKGAAlNAVQIAE~Li  319 (323)
T PRK06901        304 RFNLAFLAVKLLELIY  319 (323)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             7889999999999999


No 14 
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR010136   N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined .   The pathway from glutamate to arginine is:   NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine)   This entry represents bacterial N-acetyl-gamma-glutamyl-phosphate reductases, an enzyme catalysing the third step of arginine biosynthesis from glutamate.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=433.35  Aligned_cols=307  Identities=46%  Similarity=0.816  Sum_probs=293.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      .||-|=|--|.+|.++.+.|.+|.++||..++..+++.-.=+-+.++-+|++|+|||+..|+|-+.......  +++||.
T Consensus         2 pKvFiDGeaGTTGLqi~~rL~~R~DleLlsI~~~rRKDa~~RA~lLNaaDvaiLCLPDdAarEAVSLv~np~--~~ilDA   79 (314)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDLELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPN--TKILDA   79 (314)
T ss_pred             CCEEECCCCCCHHHHHHHHHCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCEECCCCCC--CEEEEC
T ss_conf             953641788862678988624776200031063326797998877546732333486245543000026877--247515


Q ss_pred             CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCC
Q ss_conf             63035554311002100047765204960772584211331124788888503455650267651233335610000001
Q gi|254780294|r   82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRME  161 (311)
Q Consensus        82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~  161 (311)
                      |.|||-.+||.|+.||++++|+|+|++++.|||||||+|+.++.+.||..++.+-...+|+++++|||||+||++++..+
T Consensus        80 STAyRt~~dW~YGfpEL~~eQREki~~sk~vanPGCY~tg~~aL~rPLv~~GilPA~fPv~~~a~sGYsGGGk~li~~y~  159 (314)
T TIGR01851        80 STAYRTADDWVYGFPELAPEQREKIRNSKRVANPGCYPTGFIALLRPLVEAGILPADFPVTINAVSGYSGGGKALIAKYE  159 (314)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             40000487741146457877524676055411898517899999743876577765576345563154431589999886


Q ss_pred             ---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             ---34443223433222223444443420133216711368875203433202789999863257754489988665422
Q gi|254780294|r  162 ---QKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY  238 (311)
Q Consensus       162 ---~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~  238 (311)
                         ++.-.......+..|...+.|+|.||+.++.+...++.|||....+.+||.++|.++...+.+.++.+++.+.+.++
T Consensus       160 sfh~~~a~~~~~~~f~~YgL~L~HKHlpEm~~~sgL~~~PiFtP~VG~f~qGm~V~iPLHL~~L~~~vS~~~ih~al~~y  239 (314)
T TIGR01851       160 SFHEESADNSKKQPFIIYGLALEHKHLPEMRVHSGLALPPIFTPAVGNFAQGMLVTIPLHLATLDSKVSAADIHAALAEY  239 (314)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHH
T ss_conf             45554125533578732111123774533320365568880125657300660676388557627898989999999997


Q ss_pred             HCCCCCCEEECCCCCCCC---CCCCHHHHCCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             001443056027878878---986427627996079999980899769999972221013689999999987238
Q gi|254780294|r  239 YMGQNIVSVVPLEESRKI---KTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       239 ~~~~~~v~v~~~~~~~~~---~~p~~~~~~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                      |++++||+|-+.++.+..   .+.+|+.+.|||++.+.|+-.+++.+..+++.+|||-|||||.||||||||||.
T Consensus       240 Y~Ge~Fv~Va~~~~~~~L~~G~~LD~~g~NgTN~~~lFVFG~d~g~~a~l~ArLDNLGKGAsGAAVQnLn~~LGl  314 (314)
T TIGR01851       240 YQGEQFVKVAPLDDAETLDDGTFLDPQGLNGTNRLELFVFGSDDGERALLVARLDNLGKGASGAAVQNLNIMLGL  314 (314)
T ss_pred             HCCCCEEEEECCCCCHHHCCCCEECCCCCCCCCEEEEEEECCCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCC
T ss_conf             177743886124470000168511602378841477887158773304524221025640257999876765069


No 15 
>KOG4354 consensus
Probab=100.00  E-value=0  Score=389.93  Aligned_cols=286  Identities=32%  Similarity=0.474  Sum_probs=252.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH-------------------HHHCCCCEEEECCCCHHH
Q ss_conf             0799975886789999999862997289999653007860066-------------------774799899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE-------------------DLLNAADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~-------------------~~~~~~Divf~a~p~~~s   62 (311)
                      .||+.+||+||+|.+|++|+.+||++|+.+++|++.+|+++..                   +...-+|.+.|++|.++.
T Consensus        20 ~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaLPn~vc   99 (340)
T KOG4354          20 IRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMALPNQVC   99 (340)
T ss_pred             CEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCEEEEEEECCHHHH
T ss_conf             25998733665416699886389736888632254347715674322123234424667876257764556652541567


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHH--HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             999999861258489822763035554--311002100047765204960772584211331124788888503455650
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTSTAHRIAP--GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYP  140 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss~~R~~~--~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~  140 (311)
                      +.|+.....+..+.++||.|.+||..|  +|.|++||+|  .++.+++++.|||||||+|.++++|-||++....+.   
T Consensus       100 kpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpEln--dRe~i~na~~iaNPGCYaTgsQl~l~Pllk~i~g~p---  174 (340)
T KOG4354         100 KPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELN--DREDIKNARLIANPGCYATGSQLPLVPLLKAILGKP---  174 (340)
T ss_pred             HHHHHHHHHCCCCEEEEECCHHHCCCCCHHEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCC---
T ss_conf             888888762377146631103334775402010671004--388875404026997324567256447788755886---


Q ss_pred             EEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEE
Q ss_conf             26765123333561000000134443223433222223444443420133216711368875203433202789999863
Q gi|254780294|r  141 ITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDME  220 (311)
Q Consensus       141 ~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~  220 (311)
                       .+.++||+||||.++....+    .....+|..+|... .|+|.+||.+.  ...++.|+||..++++||..||+++  
T Consensus       175 -~ifgvSGySGAGtkpspkNd----~~~l~nnlipY~lt-dHiHerEIs~r--~k~~VaF~PHv~qwfqGi~lTi~vp--  244 (340)
T KOG4354         175 -EIFGVSGYSGAGTKPSPKND----YSELANNLIPYGLT-DHIHEREISQR--SKVTVAFTPHVMQWFQGIQLTIYVP--  244 (340)
T ss_pred             -CEEEECCCCCCCCCCCCCCC----HHHHHCCCCCCCCC-CCCHHHHHHHH--HCCCEEECHHHHHHHHHCEEEEEEE--
T ss_conf             -13431255678889897557----88886377653122-22104767886--3885553444788751114899984--


Q ss_pred             CCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECC-CCEEEEEEEECCCHHHHHHH
Q ss_conf             25775448998866542200144305602787887898642762799607999998089-97699999722210136899
Q gi|254780294|r  221 RLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSE-LPYINIIAVFDNLGKGASGA  299 (311)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~-~~~~~v~s~~DNL~KGAAgn  299 (311)
                       ..+.+..+|+++.|..+|.+++||.|+.  +     .|..++++|++.|++|.+.+.. +.+.++++.||||+||||||
T Consensus       245 -mkksv~~~elr~lyk~~YedE~lvhV~d--d-----vPlvkdv~gsh~v~~ggF~~~~~g~Ravii~tIDNLlKGAatQ  316 (340)
T KOG4354         245 -MKKSVRTEELRQLYKTSYEDEELVHVLD--D-----VPLVKDVRGSHYVHMGGFPDRIPGDRAVIISTIDNLLKGAATQ  316 (340)
T ss_pred             -ECCCCCHHHHHHHHHHHCCCCCEEEEEC--C-----CCCEECCCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHH
T ss_conf             -0676568999999874306750046414--6-----6530015776326863565788885289998666565347888


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999987238
Q gi|254780294|r  300 AIQNMDLLLSS  310 (311)
Q Consensus       300 AVQn~nlm~g~  310 (311)
                      |+||+|||+|-
T Consensus       317 aLQNlNl~~GY  327 (340)
T KOG4354         317 ALQNLNLMLGY  327 (340)
T ss_pred             HHHHHHHHHCC
T ss_conf             98754434078


No 16 
>KOG4777 consensus
Probab=100.00  E-value=0  Score=318.80  Aligned_cols=298  Identities=17%  Similarity=0.157  Sum_probs=216.3

Q ss_pred             CEEE-EECCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCC------------------------HHHHCCCCEEEE
Q ss_conf             0799-975886789999999862997289999-65300786006------------------------677479989999
Q gi|254780294|r    2 YKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSI-PCEERHNLRYR------------------------EDLLNAADVSIL   55 (311)
Q Consensus         2 ~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l-~s~~~ag~~~~------------------------~~~~~~~Divf~   55 (311)
                      .|+| |+||||.|||+|+.+|++||+|+|..| +|++||||+|.                        .+.|++||++||
T Consensus         4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfs   83 (361)
T KOG4777           4 KKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFS   83 (361)
T ss_pred             CCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCHHCCCCCCHHHHHHHHHCCHHHCCCCCEEEE
T ss_conf             31355210343147789998616985134230133314698157604411202465034341375558402366558985


Q ss_pred             CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCC---------CEEEECCCCCCCCCHHHH
Q ss_conf             38983789999998612584898227630355543110021000477652049---------607725842113311247
Q gi|254780294|r   56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRS---------ARYITNPGCYATGAIAIL  126 (311)
Q Consensus        56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~---------~~iIanPnC~~t~~~laL  126 (311)
                      .++.+.+.++.+.+.|+|  ..++||++.|||+++|||+|||||++|++.++-         ..||+||||+|...+++|
T Consensus        84 gldad~ageiek~f~eag--~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl  161 (361)
T KOG4777          84 GLDADIAGEIEKLFAEAG--TIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL  161 (361)
T ss_pred             CCCCHHHHHHHHHHHHCC--EEEEECCHHCCCCCCCCEEECCCCHHHHHHHEECCCCCCCCCCEEEECCCCCEEEEEEEC
T ss_conf             278236656547788668--699867143025799745733458778425302222588899528966988703687665


Q ss_pred             HHHHHHC-CCCCCCCEEEEEECCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHH-CCCCEEEEEEE
Q ss_conf             8888850-345565026765123333-5610000001344432234332222234-444434201332-16711368875
Q gi|254780294|r  127 RPLRKAK-LLPDRYPITINAVSGYTG-GGKKLISRMEQKNMPDTISSNHFFYSLD-LLHKHLPEITQY-SLIKTSPMFLP  202 (311)
Q Consensus       127 ~PL~~~~-~i~~~~~~~~~~~sg~sg-aG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~e~~~~-~~~~~~~~~~~  202 (311)
                      +||+.++ .+++.+++++|+.||++. +|....+.+++-.+.....++.+.+... ....|...+... ..+.......+
T Consensus       162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqc  241 (361)
T KOG4777         162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQC  241 (361)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
T ss_conf             46776315445532344556315786777327788874347889620045678887653047752145425777654212


Q ss_pred             ECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH----------HCCCCCCEEECCCCCCCCCCCCHHHHCCCCE---
Q ss_conf             203433202789999863257754489988665422----------0014430560278788789864276279960---
Q gi|254780294|r  203 SVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY----------YMGQNIVSVVPLEESRKIKTIACEMMSGNDK---  269 (311)
Q Consensus       203 ~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~---  269 (311)
                      .++++..||..++.+.+.....+. .++....+.++          .+.++.+.|+  ++.. +..|+|...++.+.   
T Consensus       242 nRv~v~Dgh~~cis~~f~~~~~pa-~~qv~~~l~eyv~d~~klgc~sapkq~iyv~--dd~a-pdrPqPrldrN~d~gy~  317 (361)
T KOG4777         242 NRVIVNDGHVKCISTCFRVPVMPA-HAQVVNLLFEYVLDENKLGCISAPKQGIYVI--DDRA-PDRPQPRLDRNKDDGYG  317 (361)
T ss_pred             CEEEEECCCEEEEEEEEECCCCCC-HHHHHHHHHHCCCCHHHCCCCCCCCCEEEEE--CCCC-CCCCCCCCCCCCCCCCE
T ss_conf             346675670689988860688886-8999999986468743322302778747994--4788-99998641346677740


Q ss_pred             EEEEEEEECCCCE-----EEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             7999998089976-----99999722210136899999999
Q gi|254780294|r  270 LHLFFFDSSELPY-----INIIAVFDNLGKGASGAAIQNMD  305 (311)
Q Consensus       270 v~Vg~~~~~~~~~-----~~v~s~~DNL~KGAAgnAVQn~n  305 (311)
                      |.|||+|.+....     +....++|..+|||+.++||.++
T Consensus       318 VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~  358 (361)
T KOG4777         318 VSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAE  358 (361)
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHH
T ss_conf             56566521533465269997502210121115788999886


No 17 
>pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=99.96  E-value=1.4e-29  Score=202.36  Aligned_cols=101  Identities=23%  Similarity=0.361  Sum_probs=91.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC------------------HHHHCCCCEEEECCCCHHHH
Q ss_conf             7999758867899999998629972899996-5300786006------------------67747998999938983789
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR------------------EDLLNAADVSILCLPDVASL   63 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~------------------~~~~~~~Divf~a~p~~~s~   63 (311)
                      ||||+|||||||+||+++|.+||++++..+. |++++|+++.                  ++.++++|++|+|+|+++|+
T Consensus         1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   80 (121)
T pfam01118         1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALPAGVSK   80 (121)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCCHHHHH
T ss_conf             99998936199999999997188755137885056589601441654246666447758977853898999838768999


Q ss_pred             HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             999998612584898227630355543110021000477652
Q gi|254780294|r   64 EIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEK  105 (311)
Q Consensus        64 ~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~  105 (311)
                      ++++++.++|  ++|||+|++|||++++||++||+|+++++.
T Consensus        81 ~~~~~~~~~g--~~VIDlS~dfRl~~~~~y~lpEiN~~~i~~  120 (121)
T pfam01118        81 ELAPKLLEAG--AVVIDLSSAFRMDDDVPYVLPEVNREAIKK  120 (121)
T ss_pred             HHHHHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHHC
T ss_conf             9999987159--899878567517899857999869999844


No 18 
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.96  E-value=1.6e-29  Score=201.93  Aligned_cols=100  Identities=26%  Similarity=0.377  Sum_probs=87.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCH-----------------HHHCCCCEEEECCCCHHHHH
Q ss_conf             799975886789999999862997289999-653007860066-----------------77479989999389837899
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-PCEERHNLRYRE-----------------DLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~s~~~ag~~~~~-----------------~~~~~~Divf~a~p~~~s~~   64 (311)
                      ||||||||||||+||+++|.+||++++..+ +|++++|+++.+                 ..+.++|++|||+|+++|++
T Consensus         1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHHHH
T ss_conf             98998945199999999998589974577774046589757885966457735056533110017999999388278899


Q ss_pred             HHH---HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf             999---9861258489822763035554311002100047765
Q gi|254780294|r   65 IIQ---LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKE  104 (311)
Q Consensus        65 ~~~---~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~  104 (311)
                      +++   ++.++|  ++|||+|++|||++++||++||||+++++
T Consensus        81 ~~~~~~~~~~~g--~~VIDlSadfRl~~~~~~~lPEvN~~~i~  121 (122)
T smart00859       81 IAPLLPKAAEAG--VKVIDLSSAFRMDDDVPYGLPEVNPEAIK  121 (122)
T ss_pred             HHHHHHHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHC
T ss_conf             999889887569--87986847752789986699871988954


No 19 
>pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=99.92  E-value=1.3e-24  Score=171.60  Aligned_cols=153  Identities=19%  Similarity=0.175  Sum_probs=115.6

Q ss_pred             HHHHHHHC-CCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC----------
Q ss_conf             78888850-3455650267651233335610000001344432234332222234444434201332167----------
Q gi|254780294|r  126 LRPLRKAK-LLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI----------  194 (311)
Q Consensus       126 L~PL~~~~-~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~----------  194 (311)
                      |+||++++ ++++   ++++++||+||||+++....    .+....+|..+|...+.|+|.||+++....          
T Consensus         1 L~PL~~~~~~i~~---Iiv~t~qgvSGAG~~~~~~~----~~~~i~~N~~py~~~~~h~h~~Ei~eel~~~~e~~~~l~~   73 (167)
T pfam02774         1 LKPLRDALGGLER---VIVDTYQAVSGAGKKAKPGV----FGAPIADNLIPYIDGEEHNGTPETREELKMVNETKKILGF   73 (167)
T ss_pred             CCCHHHHHCCCCE---EEEEECCCCCCCCCCCCCCC----CCHHHHCCEEEECCCHHHCCCHHHHHHHHHHCCCCEEECC
T ss_conf             9204464489979---99992110250678878678----6534328889425740304830688887774178367438


Q ss_pred             CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCC-CCEEEEE
Q ss_conf             113688752034332027899998632577544899886654220014430560278788789864276279-9607999
Q gi|254780294|r  195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSG-NDKLHLF  273 (311)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g-~n~v~Vg  273 (311)
                      ...+.+||+++|+.|||+.++++.+.  .+....+++++.++..  ..+|+.+.+.     ..+|+|..++| +|.|+||
T Consensus        74 ~~~v~~T~~rVPv~rGh~~ti~v~~~--~~~~~~~~~~~~~~~~--~~~~v~v~~~-----~~~P~~~~v~g~tn~v~VG  144 (167)
T pfam02774        74 TPKVSATCVRVPVFRGHSETVTVKLK--LKPIDVEEVYEAFYAA--PGVFVVVRPE-----EDYPTPRAVRGGTNFVYVG  144 (167)
T ss_pred             CCCCCCEEEECCEEEEEEEEEEEEEC--CCCHHHHHHHHHHHHC--CCCEEEECCC-----CCCCCCHHHHCCCCCEEEE
T ss_conf             98633258981408468999999954--8816599999999738--9988998998-----7887449991798858999


Q ss_pred             EEEE-CC-CCEEEEEEEECCCHH
Q ss_conf             9980-89-976999997222101
Q gi|254780294|r  274 FFDS-SE-LPYINIIAVFDNLGK  294 (311)
Q Consensus       274 ~~~~-~~-~~~~~v~s~~DNL~K  294 (311)
                      |+|. .. ++.+++|+++|||+|
T Consensus       145 rir~d~~~~~~l~~~sviDNL~K  167 (167)
T pfam02774       145 RVRKDPDGDRGLKLVSVIDNLRK  167 (167)
T ss_pred             EEEECCCCCCEEEEEEEECCCCC
T ss_conf             98886899899999999725529


No 20 
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase; InterPro: IPR011534   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor.   This entry represents aspartate-semialdehyde dehydrogenase from a variety of bacterial species.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0050661 NADP binding, 0009089 lysine biosynthetic process via diaminopimelate.
Probab=99.78  E-value=1.8e-19  Score=139.68  Aligned_cols=295  Identities=17%  Similarity=0.164  Sum_probs=210.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEE-E-EEECCCCCCCC---------------CCHHHHCCCCEEEECCCCHHHHH
Q ss_conf             0799975886789999999862997289-9-99653007860---------------06677479989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCL-L-SIPCEERHNLR---------------YREDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l-~-~l~s~~~ag~~---------------~~~~~~~~~Divf~a~p~~~s~~   64 (311)
                      .+|++||+.|+||..|++.+.+..+|+. . .+.|.+..|++               ++-+.++.+|+++.|.+.+.+.+
T Consensus         1 ~~vGl~GWrGmvGsvl~~rm~ee~df~~i~~vffsts~~G~~~P~~~~~~~~~l~~a~~~~~lk~~d~i~tCqGG~yt~e   80 (367)
T TIGR01745         1 KKVGLVGWRGMVGSVLLQRMQEEKDFDAIKPVFFSTSQLGQKAPSFAKTSANILEDAYDIDALKELDIIITCQGGDYTKE   80 (367)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
T ss_conf             91134532036899999986523334444454220133155465300001567765655787742576787158740356


Q ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCC--CCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             9999861258489822763035554311002100047765204--96077258421133112478888850345565026
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIR--SARYITNPGCYATGAIAILRPLRKAKLLPDRYPIT  142 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~--~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~  142 (311)
                      .-|++++.||...+||.+|..||.+|...++..+|.+..+..-  +.+-.-.-||+..-++|.+.-|....++.=   +.
T Consensus        81 iyP~lr~~GW~GyWidaas~lrm~~d~~i~ldPvn~~~i~d~~~~G~~~f~GGnCt~s~~lm~~GGlf~~~lv~W---~~  157 (367)
T TIGR01745        81 IYPKLRKAGWKGYWIDAASSLRMKDDAVIILDPVNLDVIKDAVNKGIRTFVGGNCTVSLLLMSLGGLFRDELVEW---VS  157 (367)
T ss_pred             HHHHHHHCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HH
T ss_conf             317887266770353001000003661699752006889988850224421614898999886313557668888---88


Q ss_pred             EEEECCCCCCCCCCCHHCCCCC---------------------------CCCCCCCCCCCCCCCCCCC------------
Q ss_conf             7651233335610000001344---------------------------4322343322222344444------------
Q gi|254780294|r  143 INAVSGYTGGGKKLISRMEQKN---------------------------MPDTISSNHFFYSLDLLHK------------  183 (311)
Q Consensus       143 ~~~~sg~sgaG~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~------------  183 (311)
                      +.+||++||+|..-+.++-.+-                           ...+...+...+..+....            
T Consensus       158 ~~tyqaasG~Ga~hm~ell~~mG~~~~~v~~~l~~~~~~il~i~~kv~~~~r~~~~P~~~f~~Pla~~liPWid~~l~nG  237 (367)
T TIGR01745       158 VATYQAASGGGARHMRELLKQMGVLYKEVEEELAKPSSAILEIERKVTKLIRSEELPVENFSVPLAGSLIPWIDKQLDNG  237 (367)
T ss_pred             HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             64432014420689999998631899988987521036766677677665420016600126651110001343231057


Q ss_pred             -------CCCCHHHHCCCC--EEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf             -------342013321671--13688752034332027899998632577544899886654220014430560278788
Q gi|254780294|r  184 -------HLPEITQYSLIK--TSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESR  254 (311)
Q Consensus       184 -------h~~e~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~  254 (311)
                             .+.|..++....  ..+.-.|.++--.|+|.....+.   ..+.+..+++.+.+..   ..+++.++|++...
T Consensus       238 qs~eeWkGqae~nkil~t~~~i~~dG~Cvr~G~lrChs~~~~~k---lk~d~~~~~~e~~~~~---~n~W~~~~Pn~~~~  311 (367)
T TIGR01745       238 QSREEWKGQAETNKILGTKSTIPVDGLCVRIGALRCHSQALTIK---LKKDVSLEEIEEIIRA---HNPWVKVVPNEREI  311 (367)
T ss_pred             CCHHHHCCHHHHHHHHCCCCEEEECCEEEEEECEEEEEEEEEEE---EECCCCHHHHHHHHHC---CCCEEEECCCCHHH
T ss_conf             63023133145665523343466454478750200000002344---2035777889999864---69714425770466


Q ss_pred             CCCCCCHHHHCCCCEEEEEEEEE--CCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf             78986427627996079999980--8997699999722210136899999999
Q gi|254780294|r  255 KIKTIACEMMSGNDKLHLFFFDS--SELPYINIIAVFDNLGKGASGAAIQNMD  305 (311)
Q Consensus       255 ~~~~p~~~~~~g~n~v~Vg~~~~--~~~~~~~v~s~~DNL~KGAAgnAVQn~n  305 (311)
                      .....+|..+.|+-.+-|||.|.  .....+..|.++|+|++|||---=.-++
T Consensus       312 t~~~ltP~~~tG~l~~~~Gr~rklnmG~~y~saf~~GdqllWGaaePlrrml~  364 (367)
T TIGR01745       312 TLRELTPAAVTGTLDIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLR  364 (367)
T ss_pred             HHHHCCCCCEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             88633731110320025220000003534654443322444302038999999


No 21 
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.44  E-value=1.4e-10  Score=84.66  Aligned_cols=281  Identities=14%  Similarity=0.134  Sum_probs=178.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CCC-------------C-----------------CCCC------
Q ss_conf             90799975886789999999862997289999653-007-------------8-----------------6006------
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ERH-------------N-----------------LRYR------   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~a-------------g-----------------~~~~------   43 (311)
                      |.||||=|= |=.|+-++|.+.++|.+++..+-.. .+.             |                 +++.      
T Consensus         2 ~ikigINGF-GRIGR~v~R~~~~~~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~d   80 (337)
T PTZ00023          2 VVKIGINGF-GRIGRLVHRASLARENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKKVHLFFEKD   80 (337)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEECCCC
T ss_conf             679999568-7789999999841899489997899999999999865367899899978983895999997887505699


Q ss_pred             -HHH-H--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCC
Q ss_conf             -677-4--799899993898378999999861258489822763035554311002100047765204960772584211
Q gi|254780294|r   44 -EDL-L--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYA  119 (311)
Q Consensus        44 -~~~-~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~  119 (311)
                       .+. +  .++|+|+=|+|.-.+++-+....++|...++|+.-+.    ++.|.+|+.||.+.++  .+.++|+|-=|+|
T Consensus        81 p~~ipW~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~~----d~~~t~V~GVN~~~~~--~~~~IISnASCTT  154 (337)
T PTZ00023         81 PSQIPWGKNDVDVVAECTGVFTSTEKAKLHLKGGAKLVIISAPPS----DSTPIYVFGVNHTQYD--KSQRIVSNASCTT  154 (337)
T ss_pred             HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEECCHHHCC--CCCCEEECCCCCC
T ss_conf             666992203987899626544688999999876997799768998----8886799835634348--7672896563100


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-C
Q ss_conf             33112478888850345565026765123333561000000134----443223433222223444443420133216-7
Q gi|254780294|r  120 TGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK----NMPDTISSNHFFYSLDLLHKHLPEITQYSL-I  194 (311)
Q Consensus       120 t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~  194 (311)
                      .|+...++-|++.++|+....+|+.++.+..    ...+..+..    ........|..+...+    -...+.+..+ .
T Consensus       155 NclAPl~kvL~~~fgI~~g~mTTIHsyT~~Q----~l~D~~h~~~kD~Rr~Raa~~nIIPtsTg----AakAi~~VlPeL  226 (337)
T PTZ00023        155 NCLAPLAKVINDNFGIVEGLMTTVHAVTANQ----LTVDGASRGGKDWRAGRCAGVNIIPASTG----AAKAVGKVIPEL  226 (337)
T ss_pred             CCHHHHHHHHHHHCCEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCHHHHCCCCCCCC----HHHHHHHHHHHH
T ss_conf             3003079878653486787899863466887----30457786777545664254178866563----889998540530


Q ss_pred             CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE--
Q ss_conf             113688752034332027899998632577544899886654220014430560278788789864276279960799--
Q gi|254780294|r  195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL--  272 (311)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V--  272 (311)
                      ..++.....++|.+.+.+.-..+.   ..+.+..+++.+.+.+..++ ++-.++...+.|-   ++. +..|+.+--|  
T Consensus       227 ~GKl~g~A~RVPt~~vS~vDlt~~---l~k~~s~eein~~~~~aa~~-~lkgil~y~~~pl---VS~-Df~g~~~S~i~D  298 (337)
T PTZ00023        227 NGKLTGMAFRVPVSDVSVVDLTCR---LAKPAKYEEIVLAVKAAAEG-PLKGILGYTEDEV---VSS-DFVHDKRSSIFD  298 (337)
T ss_pred             CCCCCEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---CCC-CCCCCCCCCEEE
T ss_conf             797303689437877458999999---64764289999999998526-5688687888860---122-108999411588


Q ss_pred             -E--EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             -9--9980899769999972221013689999999987
Q gi|254780294|r  273 -F--FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL  307 (311)
Q Consensus       273 -g--~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm  307 (311)
                       .  ...+  .+.+.+++=-||= +|=|-+-+--+..|
T Consensus       299 ~~~t~~~~--~~~vKv~~WYDNE-wGYs~R~~dla~~i  333 (337)
T PTZ00023        299 VKAGIALN--DTFVKLVSWYDNE-WGYSNRLLDLAVYI  333 (337)
T ss_pred             CCCCEEEC--CCEEEEEEEECCH-HHHHHHHHHHHHHH
T ss_conf             23479987--9989999998866-99999999999999


No 22 
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.36  E-value=7.5e-10  Score=80.19  Aligned_cols=275  Identities=15%  Similarity=0.158  Sum_probs=181.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC-------------CCC-----------------CC-----CH
Q ss_conf             9079997588678999999986299-728999965300-------------786-----------------00-----66
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER-------------HNL-----------------RY-----RE   44 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~-------------ag~-----------------~~-----~~   44 (311)
                      |.||||=|= |-.|+...|.+.+++ .+|+..+..-..             -|.                 .+     .+
T Consensus         1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~   79 (335)
T COG0057           1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD   79 (335)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCC
T ss_conf             908999457-5788999999971789759999936899789989986425578877732247874898995268873289


Q ss_pred             -HHHC----CCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             -7747----9989999389837899999986125-848982276303555431100210004776520496077258421
Q gi|254780294|r   45 -DLLN----AADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        45 -~~~~----~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                       +.+.    ++|+|+=|+|-..+++-+++..++| ...+++..-+.    .+++-++..+|.+..+.  +..+|+|--|+
T Consensus        80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~----~~~~~vv~gvn~~~~~~--~~~iVsnaSCT  153 (335)
T COG0057          80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK----DDVATVVYGVNHNYYDA--GHTIVSNASCT  153 (335)
T ss_pred             HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEECCCCCCCC--CCCEEEECCCH
T ss_conf             6879812128639998998766633479998745997899857898----88617998525133578--88489874511


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CEE
Q ss_conf             1331124788888503455650267651233335610000001344432234332222234444434201332167-113
Q gi|254780294|r  119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI-KTS  197 (311)
Q Consensus       119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~~  197 (311)
                      |+|+.-.+++|.+.++|++...+|+.++..-    ...++..+..   ..-.........+....|.+.+....++ ..+
T Consensus       154 TNcLap~~kvl~d~fGI~~g~mTtVh~~T~d----Q~~~dgph~~---~rr~raa~~niIp~sTgaAkav~~VlP~L~GK  226 (335)
T COG0057         154 TNCLAPVAKVLNDAFGIEKGLMTTVHAYTND----QKLVDGPHKD---LRRARAAALNIIPTSTGAAKAVGLVLPELKGK  226 (335)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEEEEECCCCC----CCCCCCCCCC---HHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC
T ss_conf             3006787999988609459999999701598----7444476522---01001234777757874233176647045784


Q ss_pred             EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEE---EEEE
Q ss_conf             6887520343320278999986325775448998866542200144305602787887898642762799607---9999
Q gi|254780294|r  198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKL---HLFF  274 (311)
Q Consensus       198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v---~Vg~  274 (311)
                      +.-...++|.+.++.+...+.   ..+.++.+|+.+.+.+.... .+-.++...+.+         .+++|+.   +.++
T Consensus       227 l~g~A~RVPt~~vs~~dl~v~---l~k~~t~eeIn~alk~as~~-~lkg~~~y~e~~---------~Vs~D~~~~~~ssI  293 (335)
T COG0057         227 LTGMAIRVPTPNVSVVDLTVE---LEKEVTVEEINAALKAASEI-GLKGILGYTEDP---------LVSSDFNGDPHSSI  293 (335)
T ss_pred             EEEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHCC-CCCCEEEEEECC---------CCCCCCCCCCCEEE
T ss_conf             556899905887279999999---68878899999999986402-654236246413---------02665689944168


Q ss_pred             EEE-----CCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf             980-----89976999997222101368999999
Q gi|254780294|r  275 FDS-----SELPYINIIAVFDNLGKGASGAAIQN  303 (311)
Q Consensus       275 ~~~-----~~~~~~~v~s~~DNL~KGAAgnAVQn  303 (311)
                      +..     .+.+.+.+++-.||= .|-+-+-|-.
T Consensus       294 ~d~~~t~~~~~~~vk~~~wydNE-~gys~r~vD~  326 (335)
T COG0057         294 FDASATIVLGGNLVKLVAWYDNE-WGYSNRVVDL  326 (335)
T ss_pred             EECCCEEEECCCEEEEEEEEECC-CCCHHHHHHH
T ss_conf             97675687067489999999154-3225778999


No 23 
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.33  E-value=1.5e-09  Score=78.35  Aligned_cols=283  Identities=12%  Similarity=0.080  Sum_probs=176.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHC--CCCEEEEEEECCCCC-------------C-----------------CCCC-----
Q ss_conf             90799975886789999999862--997289999653007-------------8-----------------6006-----
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQ--RKDLCLLSIPCEERH-------------N-----------------LRYR-----   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~--hp~~~l~~l~s~~~a-------------g-----------------~~~~-----   43 (311)
                      |+||||=|= |=.|+-++|.+.+  ++.+++..+-.....             |                 +++.     
T Consensus         1 MikIgINGF-GRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~   79 (337)
T PRK07403          1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR   79 (337)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECC
T ss_conf             909999688-8789999999985669986999984799889999986714789998985897199899999887888059


Q ss_pred             ---HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             ---6774--79989999389837899999986125848982276303555431100210004776520496077258421
Q gi|254780294|r   44 ---EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        44 ---~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                         +..+  .++|+|+=|+|.-.+++-+....++|...++|+   +.-.+++.|-+|..+|.+.++. ++.++|+|.-|+
T Consensus        80 ~p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiS---AP~k~~d~~tiV~GVN~~~~~~-~~h~IIS~aSCT  155 (337)
T PRK07403         80 NPLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT---APGKGEGIGTYVVGVNHHEYDH-EDYNIISNASCT  155 (337)
T ss_pred             CHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEC---CCCCCCCCCEEEEECCHHHCCC-CCCEEEECCCHH
T ss_conf             966698013099899989865487788999875698679980---6998887666998426355375-444189736258


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CE
Q ss_conf             133112478888850345565026765123333561000000134-4432234332222234444434201332167-11
Q gi|254780294|r  119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSLI-KT  196 (311)
Q Consensus       119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~  196 (311)
                      |.|+...++.|++.++|.....+|+.++.+..-.    ++..+.. ........|..+...    .-...+.+..++ ..
T Consensus       156 TNclAPv~kvL~~~fgI~~g~mTTIHa~T~~Q~l----~D~~~~D~Rr~Raa~~nIIPtsT----gAakAi~~vlP~L~G  227 (337)
T PRK07403        156 TNCLAPIAKVIHDNFGIIKGTMTTTHSYTGDQRI----LDASHRDLRRARAAAVNIVPTST----GAAKAVALVIPELKG  227 (337)
T ss_pred             HHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCC----CCCCCCCCCCCCCHHHCCCCCCC----CHHHHHHHHHHHCCC
T ss_conf             7668889998875158759999887347788752----56777864566636547886655----378889876450289


Q ss_pred             EEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE----
Q ss_conf             3688752034332027899998632577544899886654220014430560278788789864276279960799----
Q gi|254780294|r  197 SPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL----  272 (311)
Q Consensus       197 ~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V----  272 (311)
                      ++.....++|.+.+.+.-..+.   ..+.+..+++...+.+..+. ++..++...+.|-   ++. +..|+.+--|    
T Consensus       228 kl~g~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~~~aa~~-~l~gil~~~~~pl---VS~-Df~g~~~S~i~D~~  299 (337)
T PRK07403        228 KLNGIALRVPTPNVSVVDLVVQ---VEKPTITEQVNEVLKDAAEG-PLKGILEYSDLPL---VSS-DYRGTDASSIVDAS  299 (337)
T ss_pred             CEEEEEEECCCCCCEEEEEEEE---CCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---CCC-CCCCCCCHHHEECC
T ss_conf             7646888427777427999997---38877499999999998657-6478654578860---152-10899812737440


Q ss_pred             -EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             -99980899769999972221013689999999987
Q gi|254780294|r  273 -FFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL  307 (311)
Q Consensus       273 -g~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm  307 (311)
                       +...+..--++..|-  ||= +|=|-+-+--++.|
T Consensus       300 ~t~v~~~~~vKv~~WY--DNE-wGYs~R~~dl~~~i  332 (337)
T PRK07403        300 LTMVMGGDMVKVIAWY--DNE-WGYSQRVVDLAELV  332 (337)
T ss_pred             CCEEECCCEEEEEEEE--CCH-HHHHHHHHHHHHHH
T ss_conf             2789789889999998--971-89999999999999


No 24 
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.32  E-value=1.1e-09  Score=79.08  Aligned_cols=282  Identities=11%  Similarity=0.089  Sum_probs=176.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CC-------------CC-----------------CC-------
Q ss_conf             907999758867899999998629972899996530-07-------------86-----------------00-------
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RH-------------NL-----------------RY-------   42 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~a-------------g~-----------------~~-------   42 (311)
                      ++||||=|= |=.|+-++|.+.++|.+|+..+-.-. ..             |+                 ++       
T Consensus         2 tirIgINGF-GRIGR~v~R~~~~~~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~   80 (333)
T PRK08955          2 TIKVGINGF-GRIGRLALRAAWDWPEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQNKA   80 (333)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEECCCC
T ss_conf             679999578-8789999999852899089999179999899999860126789899868980996999999987741488


Q ss_pred             -CHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             -6677479989999389837899999986125848982276303555431100210004776520496077258421133
Q gi|254780294|r   43 -REDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        43 -~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
                       .+..++++|+|+=|++.-.+++-+....++|...++|+.-+   -+++.+-+|..+|.+.++.. ..++|+|.-|+|.|
T Consensus        81 p~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~---k~~~~~tiV~GVN~~~~~~~-~~~iiS~aSCTTNc  156 (333)
T PRK08955         81 IADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV---KEEGVLNIVMGVNDHLYDPA-IHPIVTAASCTTNC  156 (333)
T ss_pred             CCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC---CCCCCEEEEEECCHHHCCCC-CCCEEECCCHHHHH
T ss_conf             012786667689991676688899999987598579965799---87774048996032214765-47578746414213


Q ss_pred             CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-CCEEEE
Q ss_conf             112478888850345565026765123333561000000134-443223433222223444443420133216-711368
Q gi|254780294|r  122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSL-IKTSPM  199 (311)
Q Consensus       122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~~~~~~  199 (311)
                      +...++.|.+.++|+....+|+.++.+..-    ..+..+.. ........|..+...+    -...+.+..+ ...++.
T Consensus       157 lAP~~kvl~~~fgI~~g~mTTiHa~T~~Q~----l~D~~h~d~Rr~Raa~~nIIPttTg----Aakai~~vlP~L~GKl~  228 (333)
T PRK08955        157 LAPVVKVIHEKLGIKHGSMTTIHDLTNTQT----ILDAPHKDLRRARACGMSLIPTTTG----SATAITEIFPELKGKLN  228 (333)
T ss_pred             HHHHHHHHHHHCCEEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHCCCCCCCEE
T ss_conf             476999888635841677875503668862----4777888633474220457877663----88999864421389634


Q ss_pred             EEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE---E--E
Q ss_conf             8752034332027899998632577544899886654220014430560278788789864276279960799---9--9
Q gi|254780294|r  200 FLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL---F--F  274 (311)
Q Consensus       200 ~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V---g--~  274 (311)
                      -...++|.+.+.+.-..+.   ..+.+..+++.+.+.+..+. ++-.++...+.|-   ++. +..|+..--|   .  .
T Consensus       229 g~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~~~aa~~-~lkgil~~~~~p~---VS~-D~~g~~~S~i~D~~~t~  300 (333)
T PRK08955        229 GHAVRVPLANASLTDCVFE---VERDTTEEEVNALLKEAAEG-ELKGILGYEERPL---VSI-DYKTDPRSSIVDALSTM  300 (333)
T ss_pred             EEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---HHH-HHCCCCCHHEEEHHHCE
T ss_conf             7999537877617999999---75877799999999999738-7688798878961---112-00899932148830088


Q ss_pred             EEECCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf             98089976999997222101368999999998
Q gi|254780294|r  275 FDSSELPYINIIAVFDNLGKGASGAAIQNMDL  306 (311)
Q Consensus       275 ~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nl  306 (311)
                      ..+++--++..|-  ||= +|=|-.-+--+..
T Consensus       301 ~~~~~~vKv~~WY--DNE-wGYs~Rl~dl~~~  329 (333)
T PRK08955        301 VVNGTQVKLYAWY--DNE-WGYANRTAELARK  329 (333)
T ss_pred             EECCCEEEEEEEE--CCH-HHHHHHHHHHHHH
T ss_conf             9679899999999--966-8999999999999


No 25 
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=99.17  E-value=2.6e-08  Score=70.67  Aligned_cols=281  Identities=14%  Similarity=0.130  Sum_probs=173.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC---CCCEEEEEEECCCCC-------------C-----------------CCC------
Q ss_conf             0799975886789999999862---997289999653007-------------8-----------------600------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQ---RKDLCLLSIPCEERH-------------N-----------------LRY------   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~---hp~~~l~~l~s~~~a-------------g-----------------~~~------   42 (311)
                      +||||=|= |=.|+-++|.|.+   ++.+++..+-.-...             |                 +++      
T Consensus         2 ikIgINGF-GRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~~   80 (336)
T PRK13535          2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHER   80 (336)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEECC
T ss_conf             69999788-88999999999866889986999978899989999986422678889997897089799999899999558


Q ss_pred             --CHHHHC--CCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             --667747--9989999389837899999986125848982276303555431100210004776520496077258421
Q gi|254780294|r   43 --REDLLN--AADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        43 --~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                        .+..+.  ++|+|+=|++.-.+++-+....++|.+.++|+..+.--.|   +-+|..||.+.++.  ..++|+|.-|+
T Consensus        81 dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~~~~d---~tiV~GVN~~~~~~--~~~IiSnASCT  155 (336)
T PRK13535         81 DLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD---ATVVYGVNHDQLRA--EHRIVSNASCT  155 (336)
T ss_pred             CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC---CEEEECCCHHHCCC--CCEEEECCCCC
T ss_conf             94339831158759997043116789999998759856898258876668---63896157567486--65389757533


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCC---CCCCCCCHHHHCCC
Q ss_conf             133112478888850345565026765123333561000000134-44322343322222344---44434201332167
Q gi|254780294|r  119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDL---LHKHLPEITQYSLI  194 (311)
Q Consensus       119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~h~~e~~~~~~~  194 (311)
                      |.|+...++-|++.++|.....+|+.++.+..-    ..+..+.. ........|..|...+.   ..+..||+      
T Consensus       156 TNclAPv~kvl~~~fGI~~g~mTTIHa~T~~Q~----l~D~~h~d~Rr~Raa~~nIIPtsTgAakAi~~VlP~L------  225 (336)
T PRK13535        156 TNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQ----VIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQF------  225 (336)
T ss_pred             CCEEEEHHHHHHHCCCEEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCHHHCCEECCCHHHHHHHHHCHHH------
T ss_conf             241401255366336757757887723768776----6667788863444024375456621788885216543------


Q ss_pred             CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE--
Q ss_conf             113688752034332027899998632577544899886654220014430560278788789864276279960799--
Q gi|254780294|r  195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL--  272 (311)
Q Consensus       195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V--  272 (311)
                      ..++.-...++|.+.+.+.-..+.   ..+.+..+++.+.+.+..+. ++-.++...+.|   .++. +..|+.+--|  
T Consensus       226 ~GKl~G~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~k~aa~~-~lkgil~y~~~~---lVS~-Df~~~~~SsI~D  297 (336)
T PRK13535        226 NDRFEAISVRVPTINVTAIDLSVT---VKKPVKVNEVNQLLQKAAQG-AFHGIVDYTELP---LVSI-DFNHDPHSAIVD  297 (336)
T ss_pred             CCCEEEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCC---EEEE-CCCCCCCCEEEE
T ss_conf             786437899767897158999999---63665489999999998536-447844438796---4242-049999500787


Q ss_pred             -EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             -99980899769999972221013689999999987
Q gi|254780294|r  273 -FFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL  307 (311)
Q Consensus       273 -g~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm  307 (311)
                       ....--.++.+.+++=-||= +|=|-+-+--+..|
T Consensus       298 ~~~t~v~~~~~vKv~aWYDNE-wGYs~R~vdla~~m  332 (336)
T PRK13535        298 GTQTRVSGAHLIKTLVWCDNE-WGFANRMLDTTLAM  332 (336)
T ss_pred             HHHCEEECCCEEEEEEEECCH-HHHHHHHHHHHHHH
T ss_conf             304599789889999998867-99999999999999


No 26 
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.16  E-value=3e-08  Score=70.27  Aligned_cols=282  Identities=12%  Similarity=0.129  Sum_probs=173.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------------C-----------------CCCC-------
Q ss_conf             90799975886789999999862997289999653007-------------8-----------------6006-------
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------------N-----------------LRYR-------   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------------g-----------------~~~~-------   43 (311)
                      ++||||=|= |=.|+-++|.+.+++.+++..+-.....             |                 +++.       
T Consensus         2 ~irIgINGF-GRIGR~v~R~~~~~~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~dp   80 (343)
T PRK07729          2 KVRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNNRDP   80 (343)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCCCCH
T ss_conf             679999788-8689999999966899889998489998999997585277898899789719979999975012366996


Q ss_pred             -HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             -6774--7998999938983789999998612584898227630355543110021000477652049607725842113
Q gi|254780294|r   44 -EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYAT  120 (311)
Q Consensus        44 -~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t  120 (311)
                       +..+  -++|+|+=|++.-.+++-+....++|...++|+.-+   -+++. -+|..||.+.++. ...++|+|.-|+|.
T Consensus        81 ~~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~---k~~d~-tiV~GVN~~~~~~-~~~~IiSnASCTTN  155 (343)
T PRK07729         81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG---KNEDV-TIVVGVNEDQLDI-EKHTVISNASCTTN  155 (343)
T ss_pred             HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC---CCCCC-EEEEECCHHHCCC-CCCCEEECCCHHHH
T ss_conf             7788410388499974755678899998885498679988898---99974-5997235554576-54838973847988


Q ss_pred             CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-CCEEE
Q ss_conf             3112478888850345565026765123333561000000134-443223433222223444443420133216-71136
Q gi|254780294|r  121 GAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSL-IKTSP  198 (311)
Q Consensus       121 ~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~~~~~  198 (311)
                      |+...++-|++.++|+....+|+.++.+..-    ..+..+.. ........|..|...+    -...+.+..+ ...++
T Consensus       156 clAPv~kvL~~~fGI~~g~mTTIHa~T~dQ~----l~D~~hkD~Rr~Raa~~nIIPtsTG----AAkAi~~VlPeL~GKl  227 (343)
T PRK07729        156 CLAPVVKVLDEQFGIENGLMTTVHAYTNDQK----NIDNPHKDLRRARACGQSIIPTTTG----AAKALAKVLPHLNGKL  227 (343)
T ss_pred             HHHHHHHHHHHHCCCEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHCCCC
T ss_conf             8999999998653801899998861579850----3678877545563202127856453----8899986434207872


Q ss_pred             EEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCE-EEE--E--
Q ss_conf             88752034332027899998632577544899886654220014430560278788789864276279960-799--9--
Q gi|254780294|r  199 MFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDK-LHL--F--  273 (311)
Q Consensus       199 ~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~-v~V--g--  273 (311)
                      .....++|.+.+.+.-..+.   ..+.+..+++...+.+..++ ++-.++...+.|   .++. +..|... +-+  .  
T Consensus       228 ~G~A~RVPt~~vS~vDlt~~---l~k~~t~eeIn~~~k~aa~~-~l~gil~y~~~p---lVS~-D~~g~~~Ssi~D~~~t  299 (343)
T PRK07729        228 HGMALRVPTPNVSLVDLVVD---VKRDVTVEAINEAFKTAANG-ALKGILEFSEEP---LVSI-DFNTNTHSAIIDGLST  299 (343)
T ss_pred             CEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCC---CHHH-CCCCCCCHHEEEHHHC
T ss_conf             12687057777607999999---67878799999999998627-888867768885---3112-0089992232754008


Q ss_pred             EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             9980899769999972221013689999999987
Q gi|254780294|r  274 FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL  307 (311)
Q Consensus       274 ~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm  307 (311)
                      ...+  .+.+.+++=-||= +|=|-.-+--+..|
T Consensus       300 ~v~~--~~~vKv~~WYDNE-wGYs~R~~dl~~~i  330 (343)
T PRK07729        300 MVMG--DRKVKVLAWYDNE-WGYSCRVVDLVTLV  330 (343)
T ss_pred             EEEC--CCEEEEEEEECCH-HHHHHHHHHHHHHH
T ss_conf             8978--9889999998865-99999999999999


No 27 
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.08  E-value=1.8e-08  Score=71.63  Aligned_cols=213  Identities=16%  Similarity=0.183  Sum_probs=145.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC---------CCCCCC---------------------CHHHHCCC
Q ss_conf             907999758867899999998629972899996530---------078600---------------------66774799
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE---------RHNLRY---------------------REDLLNAA   50 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~---------~ag~~~---------------------~~~~~~~~   50 (311)
                      |+||||-|= |-.|++.-+.....|..++.-++..+         +.|..+                     -++.++++
T Consensus         2 ~ikV~INGy-GtIGkRVAdav~~q~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gtiedll~~a   80 (338)
T PRK04207          2 MIKVAVNGY-GTIGKRVADAVAAQDDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGTIEDLLEKA   80 (338)
T ss_pred             CEEEEEECC-CCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf             489998248-6055899888735998189978679997789999986996785377666568756986667688975218


Q ss_pred             CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             899993898378999999861258489822763035554311-0021000477652049607725842113311247888
Q gi|254780294|r   51 DVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWV-YGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL  129 (311)
Q Consensus        51 Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vp-l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL  129 (311)
                      |+|+=|+|.++..+..+...+.|.. .++.-+-.+   +..+ .-....|.   +...++.+|-+.-|+||++.-.|+||
T Consensus        81 DvVvDcTP~g~G~~Nk~~Y~~~g~k-aIfQGGEk~---~va~~sFna~~Ny---~~a~Gk~~vrvvSCNTTgL~R~l~~L  153 (338)
T PRK04207         81 DIVVDATPGGVGAKNKPLYEKAGVK-AIFQGGEKA---EVAEVSFNALANY---EEAIGKDYVRVVSCNTTGLCRTLYPL  153 (338)
T ss_pred             CEEEECCCCCCCCCCHHHHHHCCCC-EEEECCCCC---CCCCCEEEEECCH---HHHCCCCCEEEEEECCCCHHHHHHHH
T ss_conf             9999899976440022768875983-799658876---7677506730145---77638763799653203457889999


Q ss_pred             HHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCC
Q ss_conf             88503455650267651233335610000001344432234332222234444434201332167113688752034332
Q gi|254780294|r  130 RKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQ  209 (311)
Q Consensus       130 ~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~  209 (311)
                      .+.+++++...+++          |.+.+.-+....+   .+...+.....-..|.|........ ..+.-....+|...
T Consensus       154 ~~~~gi~k~r~tlv----------RRaaDp~~~~kGp---Inai~p~p~~iPSHHgpDv~tV~p~-l~i~t~AvkVPttl  219 (338)
T PRK04207        154 REAFGVKKVRATLV----------RRAADPNEVKKGP---INAIVPDPVTIPSHHGPDVKTVLPD-LDIVTMAVKVPTTL  219 (338)
T ss_pred             HHHCCCCEEEEEEE----------EECCCHHHHCCCC---CCCCCCCCCCCCCCCCCCHHHHCCC-CCEEEEEEECCCCE
T ss_conf             87518226999999----------8338944503587---4431579977888766008875679-87168999748630


Q ss_pred             EEEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             02789999863257754489988665422
Q gi|254780294|r  210 GIAIQISLDMERLSWKTNSEELHSIFQEY  238 (311)
Q Consensus       210 g~~~~v~v~~~~~~~~~~~~~~~~~~~~~  238 (311)
                      -|++++.+.+   .++.+.+++.+.+.+.
T Consensus       220 mH~H~~~v~l---~~~~t~~eVl~~~~~~  245 (338)
T PRK04207        220 MHMHSINVEL---KKPVTKDDVLEALENT  245 (338)
T ss_pred             EEEEEEEEEE---CCCCCHHHHHHHHHHC
T ss_conf             5899999997---9988889999999638


No 28 
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=98.91  E-value=1.3e-06  Score=60.19  Aligned_cols=276  Identities=12%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             CCHHHHHHHHHHHCC----CCEEEEEEECCCCCCCCC----------------------CHH-----------------H
Q ss_conf             867899999998629----972899996530078600----------------------667-----------------7
Q gi|254780294|r   10 HGTTGLKIRSRIVQR----KDLCLLSIPCEERHNLRY----------------------RED-----------------L   46 (311)
Q Consensus        10 TG~vG~~li~lL~~h----p~~~l~~l~s~~~ag~~~----------------------~~~-----------------~   46 (311)
                      =|=.|+-|-|+|-++    ....|+.+--+......+                      +++                 .
T Consensus       137 FGRIGRLlAR~Lie~~g~g~~lrLrAIVvR~~~~~DL~KRAsLLr~DSvHG~F~Gti~vd~e~~~livNG~~I~v~~~~~  216 (479)
T PRK08289        137 FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGKEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANS  216 (479)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCEEEEEEECCC
T ss_conf             73799999999998628987468999998359657799999876013546674760899578897998995999997899


Q ss_pred             -------HCCCC--EEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             -------47998--999938983789999998612-58489822763035554311002100047765204960772584
Q gi|254780294|r   47 -------LNAAD--VSILCLPDVASLEIIQLIKKN-GINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        47 -------~~~~D--ivf~a~p~~~s~~~~~~~~~~-g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                             --++|  +|+=|++--..++-+.+..++ |...++++.-+    ..++|-+|..||.+.++.  ..+||+|.-
T Consensus       217 P~~i~~~~~gi~~a~vie~TG~f~~~~~~~~Hl~~~Ga~kV~lsaP~----k~~~~~iV~GVN~~~~~~--~~~IiSnAS  290 (479)
T PRK08289        217 PEEVDYTAYGINNALVVDNTGIWRDEEGLGQHLKSPGVAKVLLTAPG----KGDIKNIVHGVNHSDITD--EDKIVSAAS  290 (479)
T ss_pred             HHHCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCC----CCCCCEEEECCCHHHCCC--CCCEEECCC
T ss_conf             10195234098503899566731247787535348776869993578----887534897456666698--664675476


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCC-CCCCCCCCCCCCCCC---CCCCCCCHHHHC
Q ss_conf             2113311247888885034556502676512333356100000013444-322343322222344---444342013321
Q gi|254780294|r  117 CYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNM-PDTISSNHFFYSLDL---LHKHLPEITQYS  192 (311)
Q Consensus       117 C~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~h~~e~~~~~  192 (311)
                      |+|.|+...++-|.+.++|......|+.+|.+-    ....+..+.... ......|..+-..+.   ..+..||+    
T Consensus       291 CTTNclAPv~KvL~d~fGI~~G~mtTVHsyTnd----Q~liD~~hk~~RRgRaAa~NiIPTsTGAAkAv~~vlPeL----  362 (479)
T PRK08289        291 CTTNAITPVLKAVNDKYGIVNGHVETVHSYTND----QNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPEL----  362 (479)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC----
T ss_conf             265317899998753347479998863010287----516687788765677331121246663577788655055----


Q ss_pred             CCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE
Q ss_conf             67113688752034332027899998632577544899886654220014430560278788789864276279960799
Q gi|254780294|r  193 LIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL  272 (311)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V  272 (311)
                        ..++.-...++|.+.+.+.-..+.   ..+.++.+++.+.+.+.....++-.++...+.|+.  ++. +..|+..--|
T Consensus       363 --~GKL~G~AiRVPtpnVS~vDLt~~---l~k~~t~eeiN~~lk~aa~~~~lkgil~yt~~pel--VSs-Dfig~~~SsI  434 (479)
T PRK08289        363 --AGKLTGNAIRVPTPNVSMAILNLN---LEKETSREELNEYLRQMALHSPLQNQIDYTDSTEV--VSS-DFVGSRHAGV  434 (479)
T ss_pred             --CCCCCEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCE--ECC-CCCCCCCCEE
T ss_conf             --887506899888887078999999---77989999999999998744976663778658998--722-3389985479


Q ss_pred             --E--EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC
Q ss_conf             --9--9980899769999972221013689999999987238
Q gi|254780294|r  273 --F--FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS  310 (311)
Q Consensus       273 --g--~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~  310 (311)
                        +  -..+.  +.+.+++=-||= +|=+-|-|.-++-|-|-
T Consensus       435 ~D~~~T~v~g--~~~~l~~WYDNE-wGYS~rvv~l~~~ma~v  473 (479)
T PRK08289        435 VDSQATIANG--NRAVLYVWYDNE-FGYSCQVVRVMEQMAGV  473 (479)
T ss_pred             EECCCEEEEC--CCEEEEEEECCC-HHHHHHHHHHHHHHHCC
T ss_conf             9835219978--968999993671-99999999999998388


No 29 
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422    This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding.
Probab=98.80  E-value=1.6e-07  Score=65.76  Aligned_cols=270  Identities=13%  Similarity=0.145  Sum_probs=171.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCCC------------------CCCHH------------------
Q ss_conf             79997588678999999986299-728999965300786------------------00667------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHNL------------------RYRED------------------   45 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag~------------------~~~~~------------------   45 (311)
                      ||||=|= |=.|+..+|-|.|+| ..++..+|-.+-|..                  +++.+                  
T Consensus         1 RVA~NGf-GRIGR~VlRAlyE~g~~~~~~vVA~N~LA~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~geyD~i~v   79 (334)
T TIGR01532         1 RVAINGF-GRIGRNVLRALYESGKRLEIEVVALNELADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNGEYDAIRV   79 (334)
T ss_pred             CEEEECC-CCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCCCCCEEEE
T ss_conf             9334047-621100033110388734148998501024689999987167777050120004627888366777204787


Q ss_pred             --------H---HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHCCCCCCHHHHHHCCCCEEE
Q ss_conf             --------7---47998999938983789999998612584898227630--3555431100210004776520496077
Q gi|254780294|r   46 --------L---LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA--HRIAPGWVYGFPEMDKSQKEKIRSARYI  112 (311)
Q Consensus        46 --------~---~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~--~R~~~~vpl~vPEvN~~~~~~~~~~~iI  112 (311)
                              .   -=++|+|+=|.|-=-+++-.+++.++|+..+.++.=.+  -.+|.-   +|+.||.+.+..  ..+||
T Consensus        80 L~~~~~~~l~W~~L~VDlVL~C~G~Y~~r~~g~~~~~AGA~~VLFS~P~ase~DlDaT---ivYGVN~~~L~a--~~~~V  154 (334)
T TIGR01532        80 LHSSELEALPWRELGVDLVLDCTGVYGSREQGERHIRAGAKRVLFSHPGASEADLDAT---IVYGVNQEDLSA--EHKIV  154 (334)
T ss_pred             ECCCCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE---EEEECCCCCCCC--CEEEE
T ss_conf             4158866578135060089944766566688999987388634413888740126642---685021102352--30367


Q ss_pred             ECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             25842113311247888885034556502676512333356100000013444--3223433222223444443420133
Q gi|254780294|r  113 TNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNM--PDTISSNHFFYSLDLLHKHLPEITQ  190 (311)
Q Consensus       113 anPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~e~~~  190 (311)
                      +|.-|+|.|++..||-|-+++++....++|+.+.    =.-.+-++-+|....  ........+|    ..-+-...|+.
T Consensus       155 SNaSCTTNC~vP~~KlL~~A~G~e~~~iTTIHSa----M~DQ~VIDAYH~eDLRRTRaA~QSiIP----V~T~L~~GI~R  226 (334)
T TIGR01532       155 SNASCTTNCIVPLIKLLDDAIGIESGTITTIHSA----MNDQQVIDAYHHEDLRRTRAASQSIIP----VDTKLARGIER  226 (334)
T ss_pred             ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC----CCCCCEEECCCCHHHHHHHHHCCCEEC----CCCCHHHHHHH
T ss_conf             5565411101106432101215330146666403----468850223474013444544122200----44531211666


Q ss_pred             HCCC-CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCC-----CCCCHHHH
Q ss_conf             2167-11368875203433202789999863257754489988665422001443056027878878-----98642762
Q gi|254780294|r  191 YSLI-KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKI-----KTIACEMM  264 (311)
Q Consensus       191 ~~~~-~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-----~~p~~~~~  264 (311)
                      +.+. ..++.....++|.......=+.+.   ..+.+...|+.+.+.+..+.-+|-.++...+.|..     ..|-..-|
T Consensus       227 ~~P~~~~r~~A~avRVPTvNV~A~Dl~~~---~~~~~~~~evN~~l~~Aa~~G~lrG~~~YTElP~~S~DFNHDPHSAIV  303 (334)
T TIGR01532       227 LFPEFADRFEAIAVRVPTVNVTALDLSVT---VKRDVKANEVNRVLREAAQSGALRGIVDYTELPLVSVDFNHDPHSAIV  303 (334)
T ss_pred             HHHHHCCCEEEEEEECCCCEEEEEEEEEE---ECCCCCHHHHHHHHHHHHCCCCCCEEHHHCCCCCEEEECCCCCCCEEE
T ss_conf             40432474357898527102345556788---506763889999999875268520002111487035503689952367


Q ss_pred             CCCCEEEEEEEEECCCCEEEEEEEECCCHHHH
Q ss_conf             79960799999808997699999722210136
Q gi|254780294|r  265 SGNDKLHLFFFDSSELPYINIIAVFDNLGKGA  296 (311)
Q Consensus       265 ~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGA  296 (311)
                      -|+ +.+|+   ...--.+.+|+  ||= +|=
T Consensus       304 DG~-QTRVS---g~~Lv~~L~W~--DNE-WGF  328 (334)
T TIGR01532       304 DGT-QTRVS---GARLVKLLVWC--DNE-WGF  328 (334)
T ss_pred             CCC-CCCCC---CHHHEEEEEEE--CCC-CCC
T ss_conf             584-22004---15530010122--366-242


No 30 
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.73  E-value=1.5e-07  Score=65.91  Aligned_cols=119  Identities=18%  Similarity=0.214  Sum_probs=94.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCC--------C---------HHHHCCCCEEEECCCCHHH
Q ss_conf             07999758867899999998629972899996530--078600--------6---------6774799899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--RHNLRY--------R---------EDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--~ag~~~--------~---------~~~~~~~Divf~a~p~~~s   62 (311)
                      .||||+|. |..|.-|+--+.+.+++|..++.+..  |.|.+.        +         ...|.++|+||=|+....-
T Consensus         5 ~~vAIiGs-GnIGtDLm~Ki~Rs~~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GId~ll~~~~~~~idiVFDATSA~aH   83 (298)
T PRK08300          5 IKVAIIGS-GNIGTDLMIKILRSPHLEPVAMVGIDPESDGLARARRLGVATTAEGIDGLLAHPEFDDIDIVFDATSAGAH   83 (298)
T ss_pred             CEEEEECC-CCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHH
T ss_conf             34999888-83389999998657761069998059898499999984996637679999618335687889978980668


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             99999986125848982276303555431100210004776520496077258421133112478
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR  127 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~  127 (311)
                      .+..+.+.+.|  +++||+..+-    -=|++||-||-+.....++-+.|+|-|=.+++++.++.
T Consensus        84 ~~h~~~l~~~g--~~~IDLTPAa----iGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~Avs  142 (298)
T PRK08300         84 VENAAKLRELG--VRVIDLTPAA----IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVS  142 (298)
T ss_pred             HHHHHHHHHCC--CEEEECCCCC----CCCEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf             99999999739--8799677002----69878763778995579986436555730218999987


No 31 
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.58  E-value=1.3e-06  Score=60.14  Aligned_cols=119  Identities=17%  Similarity=0.187  Sum_probs=93.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC--CCCCCCC--------CH------HHHCCCCEEEECCCCHHHHHH
Q ss_conf             0799975886789999999862997289999653--0078600--------66------774799899993898378999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE--ERHNLRY--------RE------DLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~--~~ag~~~--------~~------~~~~~~Divf~a~p~~~s~~~   65 (311)
                      +||||+|. |..|.-|+--+.+.+++|..++.+.  +|.|.+.        +.      ....++|+||=|+....-.+.
T Consensus         2 ~~vAIiGs-GnIGtDLm~Ki~rS~~le~~~~vG~dp~S~GL~rA~~lGv~~s~~Gid~ll~~~~idiVFDATSA~aH~~h   80 (285)
T TIGR03215         2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH   80 (285)
T ss_pred             CEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHH
T ss_conf             36999899-83389999998667872169998248898289999984996637688989609997889966984679999


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             99986125848982276303555431100210004776520496077258421133112478
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR  127 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~  127 (311)
                      .+.+.+.|  +++||+..+-    -=|++||-||-+.....++-+.|+|-|=.+++++.++.
T Consensus        81 ~~~l~~~g--~~~IDLTPAa----iGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~avs  136 (285)
T TIGR03215        81 ARLLAELG--KIVIDLTPAA----IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAIS  136 (285)
T ss_pred             HHHHHHCC--CEEEECCCCC----CCCEEECCCCHHHHCCCCCCCEEEECCCCCCHHHHHHH
T ss_conf             99999759--9799788101----59754555387895468886337655843018999875


No 32 
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424   This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process.
Probab=98.43  E-value=5.1e-06  Score=56.46  Aligned_cols=190  Identities=15%  Similarity=0.156  Sum_probs=132.4

Q ss_pred             CCCCEEEECCCCHHHHHH--HHHHHHCC---CCEEEECCCCCH-HHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             799899993898378999--99986125---848982276303-555431100210004776520496077258421133
Q gi|254780294|r   48 NAADVSILCLPDVASLEI--IQLIKKNG---INSRIIDTSTAH-RIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~~--~~~~~~~g---~~~~vid~ss~~-R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
                      .++|+|+=|+|-=.+++-  ..+..++|   .++++|+  +.| -.++..|=+|..||.+.++.-.+.+||+|-=|+|.|
T Consensus       107 ~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlis--AP~k~~~~~~~t~V~GVN~~~y~~~~~~~iiSnASCTTNc  184 (366)
T TIGR01534       107 LGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLIS--APFKSKGDAAPTIVYGVNHDEYDDPAEERIISNASCTTNC  184 (366)
T ss_pred             HCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCEEEEEECCCHHHHCCCCCCEEEECCCCHHHH
T ss_conf             07328995887502762568989863679941268983--6888888960278866774560478886089825551357


Q ss_pred             CHHHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCHHCC--CC-CCCCCCCCCCCCCCCCC---CCCCCCCHHHHC
Q ss_conf             112478888---8503455650267651233335610000001--34-44322343322222344---444342013321
Q gi|254780294|r  122 AIAILRPLR---KAKLLPDRYPITINAVSGYTGGGKKLISRME--QK-NMPDTISSNHFFYSLDL---LHKHLPEITQYS  192 (311)
Q Consensus       122 ~~laL~PL~---~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~h~~e~~~~~  192 (311)
                      +...++.|+   +.|+|....-+|+-+|++.    ...+|..+  .. ........|.++-..+-   ...-+||+    
T Consensus       185 lAP~~kvL~~hfe~FGI~~G~MTTvHsyT~d----Q~l~D~~~~~~D~Rr~RAAa~NiIPtsTGAAkA~~~VlP~L----  256 (366)
T TIGR01534       185 LAPLAKVLDEHFEEFGIVSGLMTTVHSYTND----QNLVDGPHRHKDLRRARAAALNIIPTSTGAAKAIGKVLPEL----  256 (366)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEEEEEEEECCC----CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC----
T ss_conf             8999999987651043010169999865087----10420776888752013000266300346888998743577----


Q ss_pred             CCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CCEEECCCC
Q ss_conf             671136887520343320278999986325775448998866542200144--305602787
Q gi|254780294|r  193 LIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQN--IVSVVPLEE  252 (311)
Q Consensus       193 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~~  252 (311)
                        .-++.-...|+|.+.|.++=..+.   +.+.++.+++.+++.+..++.+  +-.++...+
T Consensus       257 --~GKL~G~A~RVPt~~vS~vdL~~~---l~k~~~~~~vnaA~k~a~~~~~~~l~g~lgy~~  313 (366)
T TIGR01534       257 --AGKLTGMAIRVPTPNVSLVDLVVN---LEKKVTKEEVNAALKEAAEGSTYLLKGVLGYTE  313 (366)
T ss_pred             --CCCEEEEEEEEECCCCEEEEEEEE---CCCCCCHHHHHHHHHHHHCCCCEEECCCEEEEC
T ss_conf             --764017899765389529999973---378778899999999984898374446100321


No 33 
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.14  E-value=2.5e-05  Score=52.23  Aligned_cols=82  Identities=18%  Similarity=0.215  Sum_probs=64.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCC-------CC---C--HHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             907999758867899999998629972899996530-0786-------00---6--677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RHNL-------RY---R--EDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~ag~-------~~---~--~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |+||+|+|- |..|+.+.+.|.+.+..++..+.... +.+.       ..   .  ++..+++|+++=|++++.-++|++
T Consensus         1 MmrVgiiG~-GaIG~~va~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~DlVVE~A~~~av~~~~~   79 (265)
T PRK13303          1 MMKVAMIGF-GAIAAAVYELLEHDPRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDALAQRPDLVVECAGHAALKEHVV   79 (265)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH
T ss_conf             929999854-6899999999844997279999946852677875304588644798898237999998988899999999


Q ss_pred             HHHHCCCCEEEECCCC
Q ss_conf             9861258489822763
Q gi|254780294|r   68 LIKKNGINSRIIDTST   83 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss   83 (311)
                      ++.++|++..+.+-+.
T Consensus        80 ~~L~~g~dl~v~SvgA   95 (265)
T PRK13303         80 PILKAGIDCAVASVGA   95 (265)
T ss_pred             HHHHCCCCEEEECCHH
T ss_conf             9997299889988158


No 34 
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.08  E-value=0.00014  Score=47.62  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=78.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-C-------CCCCCC------------HHHHCCCCEEEECCCCH
Q ss_conf             907999758867899999998629972899996530-0-------786006------------67747998999938983
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-R-------HNLRYR------------EDLLNAADVSILCLPDV   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~-------ag~~~~------------~~~~~~~Divf~a~p~~   60 (311)
                      |.||-|+|| |-||+...+.|+++-..+++..+-+. +       .+.+++            .+.+++.|+|+.|+|.-
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~   79 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF   79 (389)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCH
T ss_conf             972899898-6667999999985789629998488889999875334663169942567588999872577899928705


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             7899999986125848982276303555431100210004776520496077258421133
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
                      +.......+.+.|.  -++|.|...--          . ....+..+++++.+-|+|=-.+
T Consensus        80 ~~~~i~ka~i~~gv--~yvDts~~~~~----------~-~~~~~~a~~Agit~v~~~G~dP  127 (389)
T COG1748          80 VDLTILKACIKTGV--DYVDTSYYEEP----------P-WKLDEEAKKAGITAVLGCGFDP  127 (389)
T ss_pred             HHHHHHHHHHHHCC--CEEECCCCCCH----------H-HHHHHHHHHCCCEEECCCCCCC
T ss_conf             42999999998599--88975467750----------6-5654898874907971667686


No 35 
>PTZ00325 malate dehydrogenase; Provisional
Probab=98.06  E-value=4.9e-05  Score=50.38  Aligned_cols=40  Identities=15%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCCCCC
Q ss_conf             907999758867899999998629972-8999965300786
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEERHNL   40 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~ag~   40 (311)
                      |.||+|+||||.||..+--.|..++.. ||.++.-++-.|.
T Consensus         1 m~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~a~g~   41 (313)
T PTZ00325          1 MFKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVGAPGV   41 (313)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH
T ss_conf             93899989998699999999983899777999808972668


No 36 
>pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase.
Probab=98.04  E-value=4.3e-05  Score=50.72  Aligned_cols=106  Identities=22%  Similarity=0.280  Sum_probs=72.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC-C--------CCCCC------------HHHHCCCCEEEECCCCHH
Q ss_conf             999758867899999998629972-8999965300-7--------86006------------677479989999389837
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER-H--------NLRYR------------EDLLNAADVSILCLPDVA   61 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~-a--------g~~~~------------~~~~~~~Divf~a~p~~~   61 (311)
                      |-|+|| |.||+.+++.|.+|+.+ +++...-+.. +        +.++.            ...+++.|+|+.++|.-.
T Consensus         1 IlvlGa-G~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~diVv~~~p~~~   79 (384)
T pfam03435         1 VLIIGA-GGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLKEGDLVINLAPPFL   79 (384)
T ss_pred             CEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHHH
T ss_conf             989897-7879999999972899886999989889989877523698538999577899999998712899999984341


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCH
Q ss_conf             89999998612584898227630355543110021000477652049607725842113311
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAI  123 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~  123 (311)
                      ....+..+.+.|+  -++|.|.          ..++....+ +..+++++.+-++|=..+-+
T Consensus        80 ~~~i~~~c~~~g~--~yvd~s~----------~~~~~~~l~-~~a~~ag~~~~~~~G~~PGi  128 (384)
T pfam03435        80 SLTVLKACIETGV--HYVDTSY----------LREAQLALH-EKAKEAGVTAVLGCGFDPGL  128 (384)
T ss_pred             CHHHHHHHHHCCC--CEEECCC----------CHHHHHHHH-HHHHHCCCEEEECCCCCCCH
T ss_conf             6999999997399--7575343----------668899999-97765696899678889884


No 37 
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.02  E-value=4.3e-05  Score=50.72  Aligned_cols=82  Identities=21%  Similarity=0.215  Sum_probs=64.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC---------CCC-CC--HHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             907999758867899999998629-97289999653007---------860-06--677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH---------NLR-YR--EDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a---------g~~-~~--~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |+||+|+|. |..|+.+.+.|.+- ..++|..+.++...         +.. +.  ++...++|+++=|++++.-++|++
T Consensus         1 M~rVgiIG~-GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~~~a~~~~~~~~~~ld~l~~~~DlVVE~A~~~av~~~~~   79 (265)
T PRK13304          1 MLKIGIVGC-GAIANLITKAIDSGRINAELLAFYDRNLEKAENLAEKTGAPACLSIDELVKDVDLVVECASQKAVEDTVP   79 (265)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH
T ss_conf             949999865-7899999999867998649999978987898877641599712798998338999998989899999999


Q ss_pred             HHHHCCCCEEEECCCC
Q ss_conf             9861258489822763
Q gi|254780294|r   68 LIKKNGINSRIIDTST   83 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss   83 (311)
                      .+.++|++..+.+-+.
T Consensus        80 ~~L~~G~dlvv~SvGA   95 (265)
T PRK13304         80 KSLNNGKDVIIMSVGA   95 (265)
T ss_pred             HHHHCCCCEEEECHHH
T ss_conf             9997599899981368


No 38 
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.98  E-value=4.2e-05  Score=50.82  Aligned_cols=121  Identities=17%  Similarity=0.186  Sum_probs=90.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC--CCCCC--------C---------CCHHHHCCCCEEEECCCCHH
Q ss_conf             07999758867899999998629-97289999653--00786--------0---------06677479989999389837
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE--ERHNL--------R---------YREDLLNAADVSILCLPDVA   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~--~~ag~--------~---------~~~~~~~~~Divf~a~p~~~   61 (311)
                      .||||+|. |..|..|+--+.+| -|.|..+.-+-  .|-|.        .         +.--.|.++|+||-|+..++
T Consensus         5 ~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~~   83 (310)
T COG4569           5 RKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAGA   83 (310)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCH
T ss_conf             25999736-86208899999854786563048734888507788886198522447899983999877655885243203


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             89999998612584898227630355543110021000477652049607725842113311247888
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL  129 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL  129 (311)
                      -.+-++++.|.|  .+.||+..+-    --|+++|-+|.+..-..++-+.|+|-|--|++++.+..-.
T Consensus        84 h~~~a~~~ae~g--i~~idltpaa----igp~vvp~~n~~eh~~a~nvnmvtcggqatipiv~avsrv  145 (310)
T COG4569          84 HVKNAAALAEAG--IRLIDLTPAA----IGPYVVPVVNLEEHVDALNVNMVTCGGQATIPIVAAVSRV  145 (310)
T ss_pred             HHHHHHHHHHCC--CCEEECCHHC----CCCEECCCCCHHHHCCCCCCCEEEECCCCCEEEHHHHHHH
T ss_conf             444057788649--8423056000----4872126546577458887525866682000111421363


No 39 
>KOG4039 consensus
Probab=97.98  E-value=6.8e-05  Score=49.52  Aligned_cols=78  Identities=17%  Similarity=0.165  Sum_probs=52.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEE-EEEEECCC----CCCCCCC------------HHHHCCCCEEEECCCCH---
Q ss_conf             9079997588678999999986299728-99996530----0786006------------67747998999938983---
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC-LLSIPCEE----RHNLRYR------------EDLLNAADVSILCLPDV---   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~-l~~l~s~~----~ag~~~~------------~~~~~~~Divf~a~p~~---   60 (311)
                      |.++-|+||||.+|++|++.+.+.|.|. ++.+.-++    -+++.+.            ...+.+.|+.|.||+..   
T Consensus        18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRgk   97 (238)
T KOG4039          18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRGK   97 (238)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             02247885355313899999885656206999973157984213645467832688888776502885689961135555


Q ss_pred             ------------HHHHHHHHHHHCCCCEEE
Q ss_conf             ------------789999998612584898
Q gi|254780294|r   61 ------------ASLEIIQLIKKNGINSRI   78 (311)
Q Consensus        61 ------------~s~~~~~~~~~~g~~~~v   78 (311)
                                  .-.+.++.+.+.||..+|
T Consensus        98 aGadgfykvDhDyvl~~A~~AKe~Gck~fv  127 (238)
T KOG4039          98 AGADGFYKVDHDYVLQLAQAAKEKGCKTFV  127 (238)
T ss_pred             CCCCCEEEECHHHHHHHHHHHHHCCCEEEE
T ss_conf             566753761538888899998858970899


No 40 
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.84  E-value=0.00024  Score=46.12  Aligned_cols=109  Identities=19%  Similarity=0.190  Sum_probs=71.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC-CCC--CCCCCC----------------HHHHCCCCEEEECCCCHH
Q ss_conf             9079997588678999999986299728999965-300--786006----------------677479989999389837
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC-EER--HNLRYR----------------EDLLNAADVSILCLPDVA   61 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s-~~~--ag~~~~----------------~~~~~~~Divf~a~p~~~   61 (311)
                      |+||+|.||||--|+++++.+.+++.++|..... +.+  .|+.+.                ++.+.++|+++=-...+.
T Consensus         2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~DVvIDFS~p~~   81 (265)
T PRK00048          2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDDFDVLIDFTTPEA   81 (265)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCCCCEEEECCCHHH
T ss_conf             45999988888779999999986899799999946897233653566527676784311789886055998998998899


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             89999998612584898227630355543110021000477652049607725842113
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYAT  120 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t  120 (311)
                      +.+.+..+.+.+.. .||=-++ |-.+..-     ++.    +..++-.++-.||-+--
T Consensus        82 ~~~~~~~~~~~~~~-~ViGTTG-~~~~~~~-----~i~----~~s~~ipil~apNfSlG  129 (265)
T PRK00048         82 TLENLEFALEHGKP-LVIGTTG-FTEEQLA-----ALR----EAAKKIPVVIAPNFSVG  129 (265)
T ss_pred             HHHHHHHHHHCCCC-EEEEECC-CCHHHHH-----HHH----HHCCCCCEEEECCHHHH
T ss_conf             99999999974997-7996089-9989999-----999----74658878997855899


No 41 
>pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.
Probab=97.82  E-value=0.00038  Score=44.93  Aligned_cols=74  Identities=14%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCC-------C-----C-----HHHHCCCCEEEECCCCHH---
Q ss_conf             99975886789999999862997289999653007--860-------0-----6-----677479989999389837---
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLR-------Y-----R-----EDLLNAADVSILCLPDVA---   61 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~-------~-----~-----~~~~~~~Divf~a~p~~~---   61 (311)
                      |.|.||||++|+.+++.|.++ ..+++.+..+.+.  -+.       +     .     ...++++|.+|+++|...   
T Consensus         1 IlV~GatG~iG~~vv~~L~~~-g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~~~   79 (232)
T pfam05368         1 ILVFGATGYQGGSVVRASLKA-GHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLSKE   79 (232)
T ss_pred             EEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf             099896828999999999858-9938999718736656666417988999068887899999679988999158874177


Q ss_pred             ---HHHHHHHHHHCCCCEEE
Q ss_conf             ---89999998612584898
Q gi|254780294|r   62 ---SLEIIQLIKKNGINSRI   78 (311)
Q Consensus        62 ---s~~~~~~~~~~g~~~~v   78 (311)
                         .+.++..+.++|.+-+|
T Consensus        80 ~~~~~~~~~AA~~aGVk~~V   99 (232)
T pfam05368        80 IEDGKKLADAAKEAGVKHFI   99 (232)
T ss_pred             HHHHHHHHHHHHHCCCCCEE
T ss_conf             99999999999973998345


No 42 
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.76  E-value=0.0003  Score=45.52  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=64.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-----------------HHHHCCCCEEEECCCCHH---
Q ss_conf             079997588678999999986299728999965300786006-----------------677479989999389837---
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-----------------EDLLNAADVSILCLPDVA---   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-----------------~~~~~~~Divf~a~p~~~---   61 (311)
                      .+|-|+||||++|+.+++.|.++- .+++.+.-+..+...+.                 ...+.++|.||.+.+...   
T Consensus         1 M~ILV~GATG~lGr~vVr~Ll~~G-~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~~~~   79 (319)
T CHL00194          1 MSLLVIGATGTLGRQIVRRALDEG-YQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRPSDL   79 (319)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf             979998998589999999999688-9089995786763234215967999427887789999659967999456677886


Q ss_pred             ----------HHHHHHHHHHCCCCEEEECCCCCHHHH--HHHHHCCCCCC-HHHHHHCCCCEEEECCCCCCC
Q ss_conf             ----------899999986125848982276303555--43110021000-477652049607725842113
Q gi|254780294|r   62 ----------SLEIIQLIKKNGINSRIIDTSTAHRIA--PGWVYGFPEMD-KSQKEKIRSARYITNPGCYAT  120 (311)
Q Consensus        62 ----------s~~~~~~~~~~g~~~~vid~ss~~R~~--~~vpl~vPEvN-~~~~~~~~~~~iIanPnC~~t  120 (311)
                                ...++..+.++|.. ++|=.|. ..-+  +.+|+.--... +..++..--...|=.|+.+--
T Consensus        80 ~~~~~vd~~g~~~li~AAk~aGVk-r~V~lS~-lga~~~~~~p~~~~K~~~E~~L~~Sgl~~TIlRPs~F~q  149 (319)
T CHL00194         80 NNAYQIDLEGKLALIEAAKAAKVK-RFIFFSI-LNAEQYPQVPLMKIKSDIEEKLKQSGINYTIFRLAGFFQ  149 (319)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCC-EEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH
T ss_conf             208898898899999999984998-8999613-566668875677879999999986799859984739999


No 43 
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.70  E-value=0.00028  Score=45.73  Aligned_cols=114  Identities=16%  Similarity=0.197  Sum_probs=76.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------C---HHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             07999758867899999998629972899996530078600--------6---677479989999389837899999986
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------R---EDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------~---~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .||+|+|++|--||.|.++|... .+++.....+...++.+        .   .+...++|+|++|.|-..+.+....+.
T Consensus         1 mkI~IIGG~G~MG~~Fa~~f~~s-GyeV~I~gRd~~k~~~va~~LGv~~~~~~~e~~~~advVIvsVPI~~T~~VI~~la   79 (441)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKDK-GYEVIVWGRDPKKGKEVAKELGVEYASDNIDAAKDGDIVIVSVPINVTEDVIREVA   79 (441)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHH
T ss_conf             97999947981779999999867-98899981573135678887386222447889724999999848899999999974


Q ss_pred             H-CCCCEEEECCCCCHH-----HH----HHHHHC--CCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             1-258489822763035-----55----431100--21000477652049607725842
Q gi|254780294|r   71 K-NGINSRIIDTSTAHR-----IA----PGWVYG--FPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        71 ~-~g~~~~vid~ss~~R-----~~----~~vpl~--vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      . .-.++.+.|.+|--.     |.    .++|.+  -|-.-| ....+.++.+|-+|.=
T Consensus        80 P~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP-~v~sl~gQvVVvcP~~  137 (441)
T PRK08655         80 PHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGP-RTPSLRGQVVILTPTE  137 (441)
T ss_pred             CCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCC-CCCCCCCCEEEEECCC
T ss_conf             248999699983104177999999756578877454888799-9866578889996389


No 44 
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=97.64  E-value=0.00024  Score=46.07  Aligned_cols=39  Identities=18%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC
Q ss_conf             9079997588678999999986299-72899996530078
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN   39 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag   39 (311)
                      |.||+|+|+||-+|+..++++.++| .|++..++..+...
T Consensus         1 mk~i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~lsa~~n~~   40 (379)
T PRK05447          1 MKRITILGSTGSIGTQTLDVIRRHPDRFRVVALSAGSNVE   40 (379)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHH
T ss_conf             9789998569588899999999586875899999289799


No 45 
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.63  E-value=0.00089  Score=42.60  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC---------CCC--C--CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             07999758867899999998629-97289999653007---------860--0--6677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH---------NLR--Y--REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a---------g~~--~--~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .||+|+|. |..|+.+.+.|.+. +.++|..+..+.-.         +.+  +  -++....+|+++=|++++.-++|++
T Consensus         7 mrVgliG~-GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVVE~A~~~av~~~~~   85 (271)
T PRK13302          7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIVE   85 (271)
T ss_pred             CEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH
T ss_conf             77999886-78999999999758998189999928878889998735898740788996018999998989899999999


Q ss_pred             HHHHCCCCEEEECCCC
Q ss_conf             9861258489822763
Q gi|254780294|r   68 LIKKNGINSRIIDTST   83 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss   83 (311)
                      .+.++|.+..+.+-+.
T Consensus        86 ~~L~~G~dlvv~SvGA  101 (271)
T PRK13302         86 PVLAAGKKAIVLSVGA  101 (271)
T ss_pred             HHHHCCCCEEEECHHH
T ss_conf             9997599789975579


No 46 
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.61  E-value=0.00054  Score=43.94  Aligned_cols=84  Identities=25%  Similarity=0.273  Sum_probs=64.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCC----------CCCCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             07999758867899999998629-972899996530078----------6006677479989999389837899999986
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHN----------LRYREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag----------~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .||+|||. |+.|.=|-+-|.+. +..++..+..++..-          .....+.+.++|++|+|+|-+...++.+.+.
T Consensus         1 M~I~IiGl-GLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~g~id~~~~~~~i~~aDlVila~Pv~~~~~~l~~l~   79 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDLGLVDEIVEFEEIKECDVIFLAIPVDAIIEILQKLL   79 (275)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHH
T ss_conf             98999900-87899999999950998679999599999999998699861067312365798999176999999999986


Q ss_pred             HCCCCEEEECCCCCHH
Q ss_conf             1258489822763035
Q gi|254780294|r   71 KNGINSRIIDTSTAHR   86 (311)
Q Consensus        71 ~~g~~~~vid~ss~~R   86 (311)
                      ....++.|.|-+|--.
T Consensus        80 ~l~~~~iitDv~SvK~   95 (275)
T PRK08507         80 DIKENTTIIDLGSTKA   95 (275)
T ss_pred             HCCCCCEEEECCCHHH
T ss_conf             0467888983431289


No 47 
>TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190   This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised ..
Probab=97.59  E-value=9e-05  Score=48.77  Aligned_cols=114  Identities=24%  Similarity=0.344  Sum_probs=76.5

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-CC-----------CHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             907--9997588678999999986299728999965300786-00-----------667747998999938983789999
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-RY-----------REDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-~~-----------~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      |.|  +||||= |..|+-..++|.+.|++||..+.+++.+.. .+           .+...+++|+.|+|.|+..-.++.
T Consensus         1 M~kiRaaIVGY-GNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~va~~~~vy~V~~~~K~~~dvdv~iLC~gsatd~pe~   79 (326)
T TIGR01921         1 MSKIRAAIVGY-GNLGKSVEEAIQQAPDMELVGVFRRRDAETLDVAEELAVYAVVEDEKELEDVDVLILCTGSATDLPEQ   79 (326)
T ss_pred             CCEEEEEEECC-CCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf             97057888622-32007999998408980489988707887576112252022222232028825999738864555434


Q ss_pred             HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCC---EEEE---CCCCCCCCCHH
Q ss_conf             9986125848982276303555431100210004776520496---0772---58421133112
Q gi|254780294|r   67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSA---RYIT---NPGCYATGAIA  124 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~---~iIa---nPnC~~t~~~l  124 (311)
                      .-..+.+.++  ||.=-.||       .+|+.-.--=+..+++   -+|+   -||.+++.=+|
T Consensus        80 ~p~fA~~~nT--vDsfD~H~-------~Ip~~r~~~DaaA~~~g~VSvis~GWDPG~fSi~Rv~  134 (326)
T TIGR01921        80 KPYFAAFINT--VDSFDIHT-------DIPDLRRTLDAAAKEAGAVSVISAGWDPGLFSINRVL  134 (326)
T ss_pred             CCCCEEEEEC--CCCCCCCC-------CHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH
T ss_conf             5100122101--23650224-------2078999999999861987899834788726799999


No 48 
>pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH.
Probab=97.59  E-value=0.00087  Score=42.67  Aligned_cols=80  Identities=26%  Similarity=0.303  Sum_probs=55.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CCCCC--------------HHHHCCCCEEEECCCCHHHHH
Q ss_conf             0799975886789999999862997289999653007---86006--------------677479989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NLRYR--------------EDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~~~~--------------~~~~~~~Divf~a~p~~~s~~   64 (311)
                      +||+|.||+|-.|+++++.+.+++.++|.....+...   |+.+.              +..+.++|+++=-.-.+.+.+
T Consensus         1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvIDFS~p~~~~~   80 (122)
T pfam01113         1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLIDFTTPEATLE   80 (122)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCHHHHHH
T ss_conf             98999889887899999999858996899999438961225431001467871112447775157888999068789999


Q ss_pred             HHHHHHHCCCCEEEECCC
Q ss_conf             999986125848982276
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~s   82 (311)
                      .+..+.+.|.. .|+=-+
T Consensus        81 ~~~~~~~~~~~-~ViGTT   97 (122)
T pfam01113        81 NLELALKHGKP-LVIGTT   97 (122)
T ss_pred             HHHHHHHCCCC-EEEECC
T ss_conf             99999967998-899899


No 49 
>PRK11579 putative oxidoreductase; Provisional
Probab=97.51  E-value=0.001  Score=42.27  Aligned_cols=78  Identities=14%  Similarity=0.242  Sum_probs=60.1

Q ss_pred             CEEEEECCCCHHHHH-HHHHHHCCCCEEEEEEECCCC--C-----CCC-CC--HHHHC--CCCEEEECCCCHHHHHHHHH
Q ss_conf             079997588678999-999986299728999965300--7-----860-06--67747--99899993898378999999
Q gi|254780294|r    2 YKIFIDGEHGTTGLK-IRSRIVQRKDLCLLSIPCEER--H-----NLR-YR--EDLLN--AADVSILCLPDVASLEIIQL   68 (311)
Q Consensus         2 ~kVaIvGATG~vG~~-li~lL~~hp~~~l~~l~s~~~--a-----g~~-~~--~~~~~--~~Divf~a~p~~~s~~~~~~   68 (311)
                      +||||||+ |..|+. -++.|.++|.++|..+++...  +     |.+ ++  ++.+.  ++|+|.-|+|+..-.+++..
T Consensus         5 irvgiiG~-G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~ll~~~~id~V~i~tp~~~H~~~~~~   83 (346)
T PRK11579          5 IRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKA   83 (346)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCEECCHHHHHCCCCCCEEEECCCCHHHHHHHHH
T ss_conf             75999936-29999999999962999199999798999995025899538999999459999999997996789999999


Q ss_pred             HHHCCCCEEEECC
Q ss_conf             8612584898227
Q gi|254780294|r   69 IKKNGINSRIIDT   81 (311)
Q Consensus        69 ~~~~g~~~~vid~   81 (311)
                      +.++|..+ .+..
T Consensus        84 al~aGkhv-~~EK   95 (346)
T PRK11579         84 ALEAGKHV-VVDK   95 (346)
T ss_pred             HHHCCCCE-EECC
T ss_conf             99879948-9538


No 50 
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.49  E-value=0.0012  Score=41.72  Aligned_cols=82  Identities=12%  Similarity=0.067  Sum_probs=60.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC------CCC-----CCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             907999758867899999998629--9728999965300------786-----006677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER------HNL-----RYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~------ag~-----~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |.||+|+|. |..|+++.+.|...  +..++..+.....      +++     .+.+..-.++|+++=|++++.-++|++
T Consensus         2 ~~rVgiiG~-GAIG~~Va~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~pDlVvE~As~~Av~~~a~   80 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE   80 (267)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHHHH
T ss_conf             517999851-6999999999861777652899981533555555325665457757774128999998979899999999


Q ss_pred             HHHHCCCCEEEECCCC
Q ss_conf             9861258489822763
Q gi|254780294|r   68 LIKKNGINSRIIDTST   83 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss   83 (311)
                      ...++|++..+.+-+.
T Consensus        81 ~vL~~G~dlvv~SvGA   96 (267)
T PRK13301         81 GCLTAGLDMIICSAGA   96 (267)
T ss_pred             HHHHCCCCEEEECHHH
T ss_conf             9997599699982378


No 51 
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.45  E-value=0.0017  Score=40.91  Aligned_cols=40  Identities=13%  Similarity=0.027  Sum_probs=31.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCCCCC
Q ss_conf             0799975886789999999862997-289999653007860
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERHNLR   41 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~ag~~   41 (311)
                      .||+|+||+|.||..+--+|...+. .||.++.-.+-.|+.
T Consensus         1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a   41 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVA   41 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
T ss_conf             98999999981899999999729997769998277426675


No 52 
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.44  E-value=0.0016  Score=41.08  Aligned_cols=106  Identities=20%  Similarity=0.243  Sum_probs=67.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC---CCCC-------------CCCH---HHHCCCCEEE-ECCCCH
Q ss_conf             907999758867899999998629972899996530---0786-------------0066---7747998999-938983
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE---RHNL-------------RYRE---DLLNAADVSI-LCLPDV   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~---~ag~-------------~~~~---~~~~~~Divf-~a~p~~   60 (311)
                      |+||+|+||+|=.||++++.+.+.|..+|...-.+.   +.|+             .+.+   ....+.|+++ |..| +
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P-~   80 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP-E   80 (266)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCCCCCCEEEECCCC-H
T ss_conf             736999757872789999998528994699998137842234311232144655733206343304689889989982-5


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             7899999986125848982276303555431100210004776520496077258421
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                      .+.+.+..+.+.|.. .||=.++ |--+.         -....+..++-+++=.||-+
T Consensus        81 ~~~~~l~~~~~~~~~-lVIGTTG-f~~e~---------~~~l~~~a~~v~vv~a~NfS  127 (266)
T COG0289          81 ATLENLEFALEHGKP-LVIGTTG-FTEEQ---------LEKLREAAEKVPVVIAPNFS  127 (266)
T ss_pred             HHHHHHHHHHHCCCC-EEEECCC-CCHHH---------HHHHHHHHHHCCEEEECCCH
T ss_conf             469999999976998-6997999-99899---------99999998538989965640


No 53 
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.40  E-value=0.001  Score=42.21  Aligned_cols=118  Identities=19%  Similarity=0.243  Sum_probs=78.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC-CCC---------CC--CHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             079997588678999999986299-728999965300-786---------00--66774799899993898378999999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER-HNL---------RY--REDLLNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~-ag~---------~~--~~~~~~~~Divf~a~p~~~s~~~~~~   68 (311)
                      .+|+|||. |..|+.+++++.+-| .+|+..+.-+.. .-+         ..  -++...+.|+++=|+.++.-++|+++
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~   79 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK   79 (255)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf             95789823-37889999998668864369999448878888888603887635677773024425430788999998699


Q ss_pred             HHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH
Q ss_conf             8612584898227630355543110021000477652049607725842113311247888
Q gi|254780294|r   69 IKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL  129 (311)
Q Consensus        69 ~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL  129 (311)
                      +.++|+++.|.+-+. +- |++.-..+-|+-     ..-++++-.-+|.  +.-+-+|+.+
T Consensus        80 ~L~~g~d~iV~SVGA-La-d~~l~erl~~la-----k~~~~rv~~pSGA--iGGlD~l~aa  131 (255)
T COG1712          80 ILKAGIDVIVMSVGA-LA-DEGLRERLRELA-----KCGGARVYLPSGA--IGGLDALAAA  131 (255)
T ss_pred             HHHCCCCEEEEECHH-CC-CHHHHHHHHHHH-----HCCCCEEEECCCC--CHHHHHHHHH
T ss_conf             996599889995122-06-867999999998-----5389479933764--0127888874


No 54 
>PRK05086 malate dehydrogenase; Provisional
Probab=97.39  E-value=0.0022  Score=40.22  Aligned_cols=39  Identities=13%  Similarity=0.063  Sum_probs=29.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCE-EEEEEECCCCC-CC
Q ss_conf             07999758867899999998629-972-89999653007-86
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDL-CLLSIPCEERH-NL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~-~l~~l~s~~~a-g~   40 (311)
                      .||+|+||||.||+.+--+|..+ +.. ||.++.-.+.+ |+
T Consensus         1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~   42 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGV   42 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH
T ss_conf             989999899869999999998289877749997588886105


No 55 
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.35  E-value=0.0031  Score=39.27  Aligned_cols=58  Identities=17%  Similarity=0.153  Sum_probs=41.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC----CCCCC-------------------CHHHHCCCCEEEECC
Q ss_conf             079997588678999999986299-728999965300----78600-------------------667747998999938
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER----HNLRY-------------------REDLLNAADVSILCL   57 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~----ag~~~-------------------~~~~~~~~Divf~a~   57 (311)
                      .||+|+||+|.||..+.-.|..++ .-||.++.-.+.    .|+..                   .-+.++++|+++.++
T Consensus         1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVitA   80 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA   80 (309)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECC
T ss_conf             98999999976999999999837998759996055643423112355450343368876798279889968999999878


Q ss_pred             CC
Q ss_conf             98
Q gi|254780294|r   58 PD   59 (311)
Q Consensus        58 p~   59 (311)
                      +.
T Consensus        81 G~   82 (309)
T cd05294          81 GV   82 (309)
T ss_pred             CC
T ss_conf             98


No 56 
>pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold.
Probab=97.34  E-value=0.0006  Score=43.65  Aligned_cols=80  Identities=24%  Similarity=0.213  Sum_probs=54.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-------C---HHHHCCCCEEEECCCCHHHHHHH-H--
Q ss_conf             907999758867899999998629972899996530078600-------6---67747998999938983789999-9--
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY-------R---EDLLNAADVSILCLPDVASLEII-Q--   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~-------~---~~~~~~~Divf~a~p~~~s~~~~-~--   67 (311)
                      |.|||+||- |.-|..|.+-|.++ .+++....-+.++-+++       .   .+..+++|++|+|+|++..-+-+ .  
T Consensus         1 M~~Ig~IGl-G~MG~~ma~~L~~~-g~~v~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v~~V~~~~   78 (163)
T pfam03446         1 MAKIGFIGL-GVMGSPMALNLLKA-GYTVTVYNRTPEKVEELVAEGAVAAASPAEAAASADVVITMVPAGAAVDAVIFGE   78 (163)
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCEECCCHHHHHHCCCEEEEECCCHHHHHEEECCC
T ss_conf             988999836-79899999999977-9969999797887799998399553999999861999999258714540220263


Q ss_pred             ----HHHHCCCCEEEECCCCC
Q ss_conf             ----98612584898227630
Q gi|254780294|r   68 ----LIKKNGINSRIIDTSTA   84 (311)
Q Consensus        68 ----~~~~~g~~~~vid~ss~   84 (311)
                          .....|  ..+||.|.-
T Consensus        79 ~gl~~~~~~g--~iiid~sT~   97 (163)
T pfam03446        79 DGLLPGLKPG--DIIIDGSTI   97 (163)
T ss_pred             CCHHHHCCCC--CEEEECCCC
T ss_conf             1332313589--889867989


No 57 
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.32  E-value=0.0018  Score=40.79  Aligned_cols=151  Identities=15%  Similarity=0.126  Sum_probs=83.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCC--------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             907999758867899999998629--97289999653007--------8600---6677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERH--------NLRY---REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~a--------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |.||+++|+ |--|+.+++=|.++  +..++....-+...        |..+   ..+...++|++|+|.......+..+
T Consensus         2 m~kI~~IG~-G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~~~~~~~~~~diIiLaVKP~~~~~vl~   80 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEDVLS   80 (267)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHHHHCCCEEEEEECHHHHHHHHH
T ss_conf             987999866-8999999999997798945289977999999999997396785786988721999999728789999999


Q ss_pred             HHHHCCCCEEEECCCCCHHHH---------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC-CCC
Q ss_conf             986125848982276303555---------4311002100047765204960772584211331124788888503-455
Q gi|254780294|r   68 LIKKNGINSRIIDTSTAHRIA---------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL-LPD  137 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~~R~~---------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~-i~~  137 (311)
                      .+.... +..||+.-+-...+         ..+.=+.|=++....+..  +.+.+++++........- .|+...+ ...
T Consensus        81 ~l~~~~-~~~iISv~AGi~i~~l~~~l~~~~~ivR~MPN~~~~v~~G~--t~i~~~~~~~~~~~~~v~-~lf~~~G~~~~  156 (267)
T PRK11880         81 ELKGSL-DKLVVSIAAGITLARLERALGADLPVVRAMPNTPALVGAGM--TALCANALVSEEQRAFAL-ELLSAVGEVVW  156 (267)
T ss_pred             HHHHHH-CCEEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHCCCC--EEEECCCCCCHHHHHHHH-HHHHHCCCEEE
T ss_conf             987650-87899916999999999886368703420874899970786--466259999999999999-99972586799


Q ss_pred             CC-CEEEEEECCCCCCCCCC
Q ss_conf             65-02676512333356100
Q gi|254780294|r  138 RY-PITINAVSGYTGGGKKL  156 (311)
Q Consensus       138 ~~-~~~~~~~sg~sgaG~~~  156 (311)
                      +. -..+++.++.+|.|..-
T Consensus       157 v~~E~~~d~~TalsGsGPAy  176 (267)
T PRK11880        157 VDDESQMDAVTAVSGSGPAY  176 (267)
T ss_pred             ECCHHCCCHHHHHHCCCHHH
T ss_conf             88421022113451771799


No 58 
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=97.30  E-value=0.0016  Score=41.09  Aligned_cols=112  Identities=15%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------C------CCCCC---------HHHHCCCCEEEEC
Q ss_conf             9079997588678999999986299728999965300---------7------86006---------6774799899993
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------H------NLRYR---------EDLLNAADVSILC   56 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------a------g~~~~---------~~~~~~~Divf~a   56 (311)
                      |.||+|+|| |.=|..|-.+|.+. ..++....-++.         .      |.++.         ++..+++|++|+|
T Consensus         1 MmkI~ViGa-GawGtAlA~~la~n-~~~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iiia   78 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAILLARN-GHDVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILVA   78 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEE
T ss_conf             988999898-99999999999978-9978999838999999996498865689785899838978999998379849994


Q ss_pred             CCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             89837899999986125-8489822763035554311002100047765204960772584
Q gi|254780294|r   57 LPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        57 ~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                      +|+..-+++...+.+.- ....+|..+.-+  +++--..+.|+-.+.+..-..-..++.|+
T Consensus        79 vPs~~~~~~l~~i~~~i~~~~~li~~tKGl--e~~t~~~~seii~~~l~~~~~~~~lsGP~  137 (325)
T PRK00094         79 VPSHAFREVLKQLKPLLRPDAPIVWATKGI--EAGTGKLLSEVAEEELPDQAPLAVLSGPS  137 (325)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCEEEEEECCE--ECCCCCCHHHHHHHHCCCCCCEEEEECCC
T ss_conf             576999999999986468997499976556--24887519999999739998679981774


No 59 
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.26  E-value=0.0015  Score=41.27  Aligned_cols=85  Identities=18%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCC---------CCC---HHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             907999758867899999998629-9728999965300786---------006---677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNL---------RYR---EDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~---------~~~---~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      +.||+|||. |+.|.=+-+-|.++ +..++..+..+...-+         .+.   .+.+.++|++|+|+|-+...++..
T Consensus         6 f~~I~IiGl-GLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~~~~vl~   84 (307)
T PRK07502          6 FDRVALIGL-GLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA   84 (307)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHHHHH
T ss_conf             566899927-8799999999985499857999849999999999869975112777664045897999178999999999


Q ss_pred             HHHHC-CCCEEEECCCCCHH
Q ss_conf             98612-58489822763035
Q gi|254780294|r   68 LIKKN-GINSRIIDTSTAHR   86 (311)
Q Consensus        68 ~~~~~-g~~~~vid~ss~~R   86 (311)
                      .+... ..++.|.|.+|.-.
T Consensus        85 ~l~~~l~~~~ivTDvgSvK~  104 (307)
T PRK07502         85 EIAPHLKPGAIVTDVGSVKA  104 (307)
T ss_pred             HHHHHCCCCCEEEECCCCHH
T ss_conf             99855589968996632118


No 60 
>PRK10206 putative dehydrogenase; Provisional
Probab=97.24  E-value=0.0031  Score=39.26  Aligned_cols=82  Identities=12%  Similarity=0.219  Sum_probs=59.3

Q ss_pred             CCEEEEECCCCHHHHHH-HHHHHCC-CCEEEEEEECCCCCCCC----C------C--HHHH--CCCCEEEECCCCHHHHH
Q ss_conf             90799975886789999-9998629-97289999653007860----0------6--6774--79989999389837899
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKI-RSRIVQR-KDLCLLSIPCEERHNLR----Y------R--EDLL--NAADVSILCLPDVASLE   64 (311)
Q Consensus         1 M~kVaIvGATG~vG~~l-i~lL~~h-p~~~l~~l~s~~~ag~~----~------~--~~~~--~~~Divf~a~p~~~s~~   64 (311)
                      ++||||||- |+.|+.+ +-.|..+ +.+++..+.+++..-++    +      .  ++.+  .++|+|+.|+|+..=.+
T Consensus         2 ~irvaiiG~-G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~id~V~i~tP~~~H~~   80 (345)
T PRK10206          2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE   80 (345)
T ss_pred             EEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCCHHHHH
T ss_conf             247999926-4999999899996389957999997887618888877699812289999954999999998799578999


Q ss_pred             HHHHHHHCCCCEEEECCCCC
Q ss_conf             99998612584898227630
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss~   84 (311)
                      ++.++.++|.. ++++.--+
T Consensus        81 ~a~~al~aGkh-V~~EKP~~   99 (345)
T PRK10206         81 YAKRALEAGKN-VLVEKPFT   99 (345)
T ss_pred             HHHHHHHCCCC-EEEECCCC
T ss_conf             99999978992-89803664


No 61 
>pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Probab=97.24  E-value=0.0041  Score=38.51  Aligned_cols=58  Identities=16%  Similarity=0.183  Sum_probs=40.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCCC
Q ss_conf             07999758867899999998629972-8999965300--78600------------------66774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER--HNLRY------------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p~   59 (311)
                      .||+|+||.|.||..+--.|..++.. ||.++.-.+.  .|+.+                  ..++++++|+++.+++.
T Consensus         1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~   79 (142)
T pfam00056         1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGV   79 (142)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCC
T ss_conf             9899989877899999999974796634788505776411799998614434788769748838883789999981577


No 62 
>pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.22  E-value=0.0024  Score=39.97  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=81.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-------------C---CCC----------------------
Q ss_conf             07999758867899999998629972899996530078-------------6---006----------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN-------------L---RYR----------------------   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag-------------~---~~~----------------------   43 (311)
                      +||||=|= |=.|+-++|.+.++|.+++.++-...+..             +   +++                      
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~i~iv~INd~~~~~~~a~LlkyDS~hG~~~~~v~~~~~~i~i~g~~I~~~~~~~p~   79 (150)
T pfam00044         1 IKVGINGF-GRIGRLVLRAALAQDDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIKVFAERDPA   79 (150)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCEEEEEEECCCCC
T ss_conf             98989778-68999999999768996799985479999999998413546886986426398089999578999548955


Q ss_pred             HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             6774--7998999938983789999998612584898227630355543110021000477652049607725842
Q gi|254780294|r   44 EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        44 ~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      +..+  .++|+|+=|+|.-.+++-+....++|.+.++++.-+   .++..|-+|+.+|.+.++.  ..++|+|-=|
T Consensus        80 ~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GaKkViiSaP~---~d~~~~tiV~GVN~~~~~~--~~~iiS~ASC  150 (150)
T pfam00044        80 ELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISAPA---KDDADPTFVYGVNHDDYDP--EDDIVSNASC  150 (150)
T ss_pred             CCCCCCCCCCEEEEECCEEEEHHHHHHHHHCCCCEEEEECCC---CCCCCCEEEECCCHHHCCC--CCCEEECCCC
T ss_conf             286243547889980432402887777875798779995799---8886778997767656799--8898968889


No 63 
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.21  E-value=0.0045  Score=38.26  Aligned_cols=134  Identities=16%  Similarity=0.195  Sum_probs=83.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC-CCC----------CCC--HHHHC--CCCEEEECCCCHHHHH
Q ss_conf             90799975886789999999862997-28999965300-786----------006--67747--9989999389837899
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER-HNL----------RYR--EDLLN--AADVSILCLPDVASLE   64 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~-ag~----------~~~--~~~~~--~~Divf~a~p~~~s~~   64 (311)
                      |+||||||+.|..++..+..+.+.+. +++..+++... ..+          .+.  ++.++  ++|+|+-|+|+..=.+
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~~   82 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE   82 (342)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf             32799989876788888999973887469999964998999999998199745299999945999988999698067799


Q ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE
Q ss_conf             999986125848982276303555431100210004776520496077258421133112478888850345565026
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPIT  142 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~  142 (311)
                      ++.++.++|.. +.+..--+.-.++--     |+-.-..+  .+..+--.-+-.=.+....++-|.+.+.+-++..+.
T Consensus        83 ~a~~AL~aGkh-Vl~EKPla~t~~ea~-----~l~~~a~~--~g~~l~v~~~~Rf~p~~~~~k~li~~g~iG~i~~~~  152 (342)
T COG0673          83 LALAALEAGKH-VLCEKPLALTLEEAE-----ELVELARK--AGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSVQ  152 (342)
T ss_pred             HHHHHHHCCCE-EEEECCCCCCHHHHH-----HHHHHHHH--CCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCEEEEE
T ss_conf             99999977996-999289989999999-----99999997--599499988465498999999998659874159999


No 64 
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.17  E-value=0.0019  Score=40.51  Aligned_cols=84  Identities=14%  Similarity=0.196  Sum_probs=64.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC-------CC--CCC---HHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             07999758867899999998629-97289999653007-------86--006---6774799899993898378999999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH-------NL--RYR---EDLLNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a-------g~--~~~---~~~~~~~Divf~a~p~~~s~~~~~~   68 (311)
                      .+|+|+|. |+.|.=+-+-|.++ +..++.-...+...       |.  ...   ++...++|++|+|+|-+...++...
T Consensus         1 k~V~IiGl-GLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A~~~g~id~~~~~~~~~~~~~DlVvlatPv~~~~~~l~~   79 (357)
T PRK06545          1 KTVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSGAQLARALGFGVIDELAEDLARAAAEADLIVLAVPVDATAALLAE   79 (357)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCHHHHCCCCCEEEECCCHHHHHHHHHH
T ss_conf             97999977-87899999999854997699996699999999986899773048876715679999994999999999999


Q ss_pred             HHHCCCCEEEECCCCCHH
Q ss_conf             861258489822763035
Q gi|254780294|r   69 IKKNGINSRIIDTSTAHR   86 (311)
Q Consensus        69 ~~~~g~~~~vid~ss~~R   86 (311)
                      +.....++.|.|-+|--.
T Consensus        80 l~~l~~~~ivTDVgSvK~   97 (357)
T PRK06545         80 LADLAPGVIVTDVGSVKG   97 (357)
T ss_pred             HHHCCCCCEEEECCCCHH
T ss_conf             872389978997510079


No 65 
>pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot.
Probab=97.15  E-value=0.0027  Score=39.65  Aligned_cols=77  Identities=16%  Similarity=0.219  Sum_probs=57.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHH-CCCCEEEEEEECCCC-CCCCC---------C--HHHH--CCCCEEEECCCCHHHHHHH
Q ss_conf             079997588678999999986-299728999965300-78600---------6--6774--7998999938983789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSIPCEER-HNLRY---------R--EDLL--NAADVSILCLPDVASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l~s~~~-ag~~~---------~--~~~~--~~~Divf~a~p~~~s~~~~   66 (311)
                      +||||+|+ |..|+..++-+. ..|.+++..+++... .-+.+         .  ++.+  .++|+++.|+|++.-.+++
T Consensus         1 iki~iiG~-G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~v~I~tp~~~H~~~~   79 (120)
T pfam01408         1 LRVGIVGA-GKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGVPAYSDLEELLADPDVDAVSVATPPGLHFELA   79 (120)
T ss_pred             CEEEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf             98999907-79999999999855999789999829999999999983996788699997377889899908746189999


Q ss_pred             HHHHHCCCCEEEEC
Q ss_conf             99861258489822
Q gi|254780294|r   67 QLIKKNGINSRIID   80 (311)
Q Consensus        67 ~~~~~~g~~~~vid   80 (311)
                      ..+.++|..+ .+.
T Consensus        80 ~~~l~~g~~v-~~E   92 (120)
T pfam01408        80 LAALEAGKHV-LVE   92 (120)
T ss_pred             HHHHHHCCEE-EEE
T ss_conf             9999819989-996


No 66 
>PTZ00117 malate dehydrogenase; Provisional
Probab=97.15  E-value=0.0051  Score=37.90  Aligned_cols=58  Identities=19%  Similarity=0.107  Sum_probs=41.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCCC
Q ss_conf             90799975886789999999862997289999653007--8600-------------------66774799899993898
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p~   59 (311)
                      |.||+|+|| |.||+.+--+|..+...||.++.-.+..  |+..                   +-++.+++|+++.+++.
T Consensus         1 M~KV~IIGa-G~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~   79 (313)
T PTZ00117          1 MKKISIIGS-GQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVITAGV   79 (313)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEECCCC
T ss_conf             978999897-9899999999970899879999588983088998877242036898579837999996899999989899


No 67 
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=97.08  E-value=0.0063  Score=37.33  Aligned_cols=109  Identities=16%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------------CC-----------------CCC--------
Q ss_conf             0799975886789999999862997289999653007-------------86-----------------006--------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------------NL-----------------RYR--------   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------------g~-----------------~~~--------   43 (311)
                      +||||=|= |=.|+-++|.+.++|.+++..+....+.             |+                 ++.        
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~vv~INd~~~~~~~a~Ll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~~p~   79 (149)
T smart00846        1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA   79 (149)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCEEEEEECCCCCC
T ss_conf             98989778-78999999999768995899845777689999998532436886886326088089999576423058965


Q ss_pred             HHH--HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             677--47998999938983789999998612584898227630355543110021000477652049607725842
Q gi|254780294|r   44 EDL--LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        44 ~~~--~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      +..  -.++|+|+=|++.-.+++-+....+.|...++++.-+.    +..+-+|..+|.+..+.  +..+|+|-=|
T Consensus        80 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViisaP~~----d~~~tiV~GvN~~~~~~--~~~iiS~aSC  149 (149)
T smart00846       80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK----DADKTFVYGVNHDEYDP--EDHIVSNASC  149 (149)
T ss_pred             CCCHHHCCCCEEEECCCEEEEHHHHHHHHHCCCCEEEECCCCC----CCCCEEEECCCHHHCCC--CCCEEECCCC
T ss_conf             4872340888899805513128876666647967699827988----99878997457544799--8898968879


No 68 
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.06  E-value=0.0043  Score=38.35  Aligned_cols=83  Identities=19%  Similarity=0.147  Sum_probs=59.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-----------CCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             0799975886789999999862997289999653007860-----------06677479989999389837899999986
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-----------YREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-----------~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .||+|||. |+.|.=|-.-|.++. .++..+..++..-++           ...+.++++|++|+|+|-+...++.+.+.
T Consensus         2 mkI~IiGl-GLIGgSla~al~~~~-~~V~g~d~~~~~~~~A~~~g~id~~~~~~~~~~~aDliila~Pv~~~~~~~~~~~   79 (280)
T PRK07417          2 MNIGIVGL-GLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEELI   79 (280)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCEECCCHHHHCCCCEEEECCCHHHHHHHHHHHH
T ss_conf             78999931-857999999999689-9799997999999999986997520278746057998998797477899999998


Q ss_pred             HC-CCCEEEECCCCCHH
Q ss_conf             12-58489822763035
Q gi|254780294|r   71 KN-GINSRIIDTSTAHR   86 (311)
Q Consensus        71 ~~-g~~~~vid~ss~~R   86 (311)
                      .. ..++.|.|.+|--.
T Consensus        80 ~~l~~~~iitDv~SvK~   96 (280)
T PRK07417         80 PALPPEAIVTDVGSVKE   96 (280)
T ss_pred             HHCCCCCEEEECHHHHH
T ss_conf             64789848996522307


No 69 
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.05  E-value=0.0052  Score=37.87  Aligned_cols=115  Identities=12%  Similarity=0.136  Sum_probs=77.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      .||.|||.+|--|+.|.+.|... -.++..+..+.   -.-.++.+.++|+|+.|.|=..+.+...++.....++...|.
T Consensus        99 ~~i~IIGG~G~mG~~F~~~f~~s-Gy~V~ild~~d---w~~~~~~~~~advViVsVPI~~T~~VI~~l~~l~~~~lL~Di  174 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEKDD---WDRADDILADAGMVIVSVPIHLTEEVIEKLPPLPEDCILVDL  174 (374)
T ss_pred             CEEEEEECCCCHHHHHHHHHHHC-CCEEEEECCCC---CCCHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCEEEEC
T ss_conf             71799807982779999999967-98799616444---534898871799899981458899999857789998689861


Q ss_pred             CCCHHH---------HHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC
Q ss_conf             630355---------5431100210004776520496077258421133
Q gi|254780294|r   82 STAHRI---------APGWVYGFPEMDKSQKEKIRSARYITNPGCYATG  121 (311)
Q Consensus        82 ss~~R~---------~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~  121 (311)
                      +|--..         ...|.=.-|-.-|+ ...+.++.+|-+||=..-.
T Consensus       175 TSvK~~Pl~aMl~~h~gpV~GlHPMFGP~-v~sl~~QvVV~c~gr~~e~  222 (374)
T PRK11199        175 TSVKNGPLQAMLAAHSGPVLGLHPMFGPD-VGSLAKQVVVVCDGRQPEA  222 (374)
T ss_pred             HHCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCHHH
T ss_conf             00427899999985689850227787999-6444787699889998377


No 70 
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.03  E-value=0.0018  Score=40.74  Aligned_cols=152  Identities=15%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCC-CCC----CCC-------CHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             9079997588678999999986299---72899996530-078----600-------66774799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEE-RHN----LRY-------REDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~-~ag----~~~-------~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      |.||+++|+ |--|+.+++=|.++.   .-++.....++ ..-    .++       .++...++|++|+|.+.....+.
T Consensus         1 M~kI~fIG~-GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIilaVKP~~~~~v   79 (275)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVITPEEIILYSRSENEHFKQLYDKYPTVALASNEELFTKCDHSFICVPPLAVLPL   79 (275)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEECHHHHHHH
T ss_conf             988999867-8999999999997899996369997899389999999874953637779998549989999785879999


Q ss_pred             HHHHHHC-CCCEEEECCCCCHHHHH-------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf             9998612-58489822763035554-------31100210004776520496077258421133112478888850-345
Q gi|254780294|r   66 IQLIKKN-GINSRIIDTSTAHRIAP-------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK-LLP  136 (311)
Q Consensus        66 ~~~~~~~-g~~~~vid~ss~~R~~~-------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~-~i~  136 (311)
                      ...+... ..+..||+-.+-...+.       .+.-++|=.+....+.+  +.+..+++|....... +.-|+... ...
T Consensus        80 l~~i~~~~~~~~~iISi~AGi~i~~l~~~~~~~vvRvMPNtpa~vg~Gv--t~~~~~~~~~~~~~~~-v~~lf~~~G~v~  156 (275)
T PRK06928         80 MKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGQVSRLIPSLTSAVGVGT--SLVAHAETVAEENKSR-LEELLSAFSHVM  156 (275)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHCCCE--EEEECCCCCCHHHHHH-HHHHHHHCCCEE
T ss_conf             9997653279968999569998999997579983797137327767842--8996289899999999-999998579713


Q ss_pred             CCCCEEEEEECCCCCCCCCC
Q ss_conf             56502676512333356100
Q gi|254780294|r  137 DRYPITINAVSGYTGGGKKL  156 (311)
Q Consensus       137 ~~~~~~~~~~sg~sgaG~~~  156 (311)
                      .+.--.+++.++.||.|.+-
T Consensus       157 ~v~E~~~d~~TalsGSGPAy  176 (275)
T PRK06928        157 TIREENMDIASNLTSSSPGF  176 (275)
T ss_pred             EECHHHHHHHHHHHCCHHHH
T ss_conf             30589988999883639999


No 71 
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.02  E-value=0.0044  Score=38.34  Aligned_cols=95  Identities=22%  Similarity=0.255  Sum_probs=65.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------CCCC----CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             90799975886789999999862997289999653007---------8600----6677479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------NLRY----REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g~~~----~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |.+++|+|+ |..|..|-++|..- ..|+..-+|+...         +..+    .++..+.+|+||+|.|-+.-....+
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~a-g~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~   78 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKA-GHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLA   78 (211)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf             917999625-71878999999967-9739996478806788999864565334776888843998999545787776999


Q ss_pred             HHHHCCCCEEEECCCCCH--HHHHHHHHCCCC
Q ss_conf             986125848982276303--555431100210
Q gi|254780294|r   68 LIKKNGINSRIIDTSTAH--RIAPGWVYGFPE   97 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~~--R~~~~vpl~vPE   97 (311)
                      .+.+.-.++.|||-+...  ...+..-|.+|.
T Consensus        79 ~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~  110 (211)
T COG2085          79 ELRDALGGKIVIDATNPIEVNGEPGDLYLVPS  110 (211)
T ss_pred             HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf             99987099099966887544688301036888


No 72 
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.01  E-value=0.0035  Score=38.96  Aligned_cols=85  Identities=14%  Similarity=0.140  Sum_probs=59.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC-------CCCCC------CHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             907999758867899999998629-9728999965300-------78600------667747998999938983789999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER-------HNLRY------REDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~-------ag~~~------~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      |.+|+|+| .|..|+-+-+-|.++ +...+.-..-+..       -|-..      ..+...+.|++|+|+|-..+.++.
T Consensus         3 ~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aDlVivavPi~~~~~~l   81 (279)
T COG0287           3 SMKVGIVG-LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL   81 (279)
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCEEEEECCHHHHHHHH
T ss_conf             64899987-74677999999997698479972477467787766358530100115554135699899957788999999


Q ss_pred             HHHHH-CCCCEEEECCCCCHH
Q ss_conf             99861-258489822763035
Q gi|254780294|r   67 QLIKK-NGINSRIIDTSTAHR   86 (311)
Q Consensus        67 ~~~~~-~g~~~~vid~ss~~R   86 (311)
                      .++.. ...++.|.|.+|.-+
T Consensus        82 ~~l~~~l~~g~iv~Dv~S~K~  102 (279)
T COG0287          82 KELAPHLKKGAIVTDVGSVKS  102 (279)
T ss_pred             HHHCCCCCCCCEEECCCCHHH
T ss_conf             986303799988973642017


No 73 
>pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.
Probab=96.97  E-value=0.0063  Score=37.36  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=53.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE-ECC-CCCCCCCC--------HHHHC--CCCEEEECCCCHHHHHHHHHH
Q ss_conf             0799975886789999999862997289999-653-00786006--------67747--998999938983789999998
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-PCE-ERHNLRYR--------EDLLN--AADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~s~-~~ag~~~~--------~~~~~--~~Divf~a~p~~~s~~~~~~~   69 (311)
                      .||+|+|++++ |+.+..-..++-.+.+..+ ..+ +..|+++.        ++..+  ++|++++|.|.+.+++.+..+
T Consensus         4 ~~v~liG~g~l-G~al~~~~~~~~~~~i~~vfdv~p~~~G~~i~gipv~~~l~~~~~~~~idiaii~VP~~~a~~~~~~~   82 (96)
T pfam02629         4 TKVAVIGASGL-GIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEEDTGVDVAVITVPAPFAQEAIDEL   82 (96)
T ss_pred             CEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCEEEECCHHHHHHCCCCCEEEEEECHHHHHHHHHHH
T ss_conf             74999998982-78887768877148618998069242775888998431087774155887899994789989999999


Q ss_pred             HHCCCCEEE
Q ss_conf             612584898
Q gi|254780294|r   70 KKNGINSRI   78 (311)
Q Consensus        70 ~~~g~~~~v   78 (311)
                      .++|.+..+
T Consensus        83 v~~GIk~i~   91 (96)
T pfam02629        83 VDAGIKGIV   91 (96)
T ss_pred             HHCCCCEEE
T ss_conf             986998999


No 74 
>pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway.
Probab=96.96  E-value=0.003  Score=39.31  Aligned_cols=52  Identities=13%  Similarity=0.109  Sum_probs=36.9

Q ss_pred             EEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCHHHHCCCCEEEE
Q ss_conf             9997588678999999986299-728999965300786006677479989999
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHNLRYREDLLNAADVSIL   55 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag~~~~~~~~~~~Divf~   55 (311)
                      |+|+|+||=+|+.-++++.+|| .|++..++..++..+-......=+..+++.
T Consensus         1 I~IlGsTGSIG~~tL~Vi~~~~~~f~v~~Lsa~~N~~~L~~q~~~f~p~~v~i   53 (129)
T pfam02670         1 ITILGSTGSIGTQTLDVIRRNPDRFEVVALSAGRNVELLAEQIKEFKPKYVAV   53 (129)
T ss_pred             CEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEE
T ss_conf             98976786889999999995956718999983478999999999739979999


No 75 
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.95  E-value=0.0071  Score=37.04  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=36.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCC------------CHHHHCCCCEEEECCC
Q ss_conf             0799975886789999999862997289999653007-----8600------------6677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRY------------REDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~------------~~~~~~~~Divf~a~p   58 (311)
                      .||-|.||||++|..+++.|.+.- .+++.+.-..+.     +..+            -+..++++|+||-++.
T Consensus         1 MriLVTGgtGfiG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLERG-EEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAA   73 (328)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECC
T ss_conf             949998677799999999999784-9899998999865565217977998207999999999717858976134


No 76 
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.89  E-value=0.0031  Score=39.25  Aligned_cols=57  Identities=19%  Similarity=0.267  Sum_probs=39.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC------EEEEEEECCCC----CCCCC------------------CHHHHCCCCEE
Q ss_conf             0799975886789999999862997------28999965300----78600------------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD------LCLLSIPCEER----HNLRY------------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~------~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div   53 (311)
                      .||+|+||+|.+|+.+.-+|.+.+.      ++|+++...+.    .|...                  ..++++++|+|
T Consensus         1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~~~~~~~~~~aDvV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf             98999899978999999999728636998600899975888655531487866534665558748428858983799889


Q ss_pred             EECCC
Q ss_conf             99389
Q gi|254780294|r   54 ILCLP   58 (311)
Q Consensus        54 f~a~p   58 (311)
                      ++.++
T Consensus        81 iitaG   85 (323)
T cd00704          81 ILVGA   85 (323)
T ss_pred             EECCC
T ss_conf             98278


No 77 
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=96.89  E-value=0.011  Score=35.97  Aligned_cols=78  Identities=15%  Similarity=0.319  Sum_probs=50.0

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-------CCC-------HHH-------HCCCCEEEECCCCH--
Q ss_conf             9997588678999999986299728999965300786-------006-------677-------47998999938983--
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-------RYR-------EDL-------LNAADVSILCLPDV--   60 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-------~~~-------~~~-------~~~~Divf~a~p~~--   60 (311)
                      |.|.||||.+|+.+++.|.+.. .+++.++.++.+..       +++       +..       .+++|.+|+..|..  
T Consensus         2 IlVtGATG~iG~~v~~~L~~~g-~~v~~~~R~~~~~~~~~~~~v~~d~~d~~~~~~a~~~~d~~~~~v~~v~l~~p~~~~   80 (285)
T TIGR03649         2 ILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD   80 (285)
T ss_pred             EEEECCCCHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf             8999899818999999998689-978999588566466667536864448114888976353231274189983899877


Q ss_pred             ---HHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             ---78999999861258489822763
Q gi|254780294|r   61 ---ASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        61 ---~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                         ....++..+.++|.. +|+-.|.
T Consensus        81 ~~~~~~~~i~aA~~aGV~-~iV~lS~  105 (285)
T TIGR03649        81 LAPPMIKFIDFARSKGVR-RFVLLSA  105 (285)
T ss_pred             HHHHHHHHHHHHHHCCCC-EEEEEEC
T ss_conf             678999999999984998-8999830


No 78 
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=96.87  E-value=0.0046  Score=38.21  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCC-CC-------CCC---CCHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             90799975886789999999862997---2899996530-07-------860---0667747998999938983789999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEE-RH-------NLR---YREDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~-~a-------g~~---~~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      |.||+++|+ |--|+.|++=|.+.+.   .++..-..+. +.       |-.   -......+.|++|+|.......+..
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl   79 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL   79 (266)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEEECHHHHHHHH
T ss_conf             965899846-8899999999996689980238983799999999999849855686798874089899984827689999


Q ss_pred             HHHHHCCCCEEEECCCCCHHHH--------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             9986125848982276303555--------43110021000477652049607725842113311247888885034556
Q gi|254780294|r   67 QLIKKNGINSRIIDTSTAHRIA--------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDR  138 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss~~R~~--------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~  138 (311)
                      +.+.....+..||+-..--+.+        ..+.=+.|-.+....+.  -+.+..|.+|+......+..-|-..+....+
T Consensus        80 ~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g--~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v  157 (266)
T COG0345          80 SKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG--VTAISANANVSEEDKAFVEALLSAVGKVVEV  157 (266)
T ss_pred             HHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHCCCEEEE
T ss_conf             97323568887999707997999998748996699678858897175--2265137658988999999999825986996


Q ss_pred             CCEEEEEECCCCCCCCCCC
Q ss_conf             5026765123333561000
Q gi|254780294|r  139 YPITINAVSGYTGGGKKLI  157 (311)
Q Consensus       139 ~~~~~~~~sg~sgaG~~~~  157 (311)
                      .-.-++++++.||.|-.-.
T Consensus       158 ~E~~~da~TaisGSgPAyv  176 (266)
T COG0345         158 EESLMDAVTALSGSGPAYV  176 (266)
T ss_pred             CHHHHHHHHHHHCCCHHHH
T ss_conf             4677149999844868999


No 79 
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=96.86  E-value=0.01  Score=36.04  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------C------CCCC------C---HHHHCCCCEEEECC
Q ss_conf             079997588678999999986299728999965300---------7------8600------6---67747998999938
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------H------NLRY------R---EDLLNAADVSILCL   57 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------a------g~~~------~---~~~~~~~Divf~a~   57 (311)
                      .||+|+|| |.-|..|-..|.+.- .++...+-++.         .      |.++      .   ++.++++|++|+|+
T Consensus         1 kKI~IiGa-G~wGtAla~~la~n~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiav   78 (159)
T pfam01210         1 KKIAVLGA-GSWGTALAKVLARNG-HEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAV   78 (159)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEEC
T ss_conf             98999996-999999999999879-9899999043666778866978210478645553054288999983798999917


Q ss_pred             CCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCC
Q ss_conf             9837899999986125-84898227630355543110021000
Q gi|254780294|r   58 PDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMD   99 (311)
Q Consensus        58 p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN   99 (311)
                      |...-+++...+...- ....++..+.-+  +++--+.+.|+-
T Consensus        79 ps~~~~~~~~~i~~~~~~~~~iv~~sKGi--e~~t~~~~s~i~  119 (159)
T pfam01210        79 PSQALREVLKQLKGLLSPGAILVSLTKGI--EPGTLKLLSEII  119 (159)
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCHHHHH
T ss_conf             48899999999986557655688875144--278875299999


No 80 
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.86  E-value=0.0047  Score=38.13  Aligned_cols=56  Identities=16%  Similarity=0.241  Sum_probs=37.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCC----CCCCC------------------HHHHCCCCEE
Q ss_conf             07999758867899999998629------97289999653007----86006------------------6774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERH----NLRYR------------------EDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~a----g~~~~------------------~~~~~~~Div   53 (311)
                      .||+|+||||.+|+.+.-.|.+.      ..++|.++......    |...+                  .+.++++|+|
T Consensus         3 ~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~aDvV   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCCCEE
T ss_conf             09999899968999999999711130799726999975757566676577445326765458779748878983788789


Q ss_pred             EECC
Q ss_conf             9938
Q gi|254780294|r   54 ILCL   57 (311)
Q Consensus        54 f~a~   57 (311)
                      +..+
T Consensus        83 vita   86 (322)
T cd01338          83 LLVG   86 (322)
T ss_pred             EEEC
T ss_conf             9936


No 81 
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.80  E-value=0.0041  Score=38.47  Aligned_cols=34  Identities=26%  Similarity=0.436  Sum_probs=29.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9079997588678999999986299728999965
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |+||-|-||+|++|..|++.|.++...++..+.-
T Consensus         1 MKkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~   34 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLTKRILETTDWEVYGMDM   34 (347)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf             9889997574389999999999828978999979


No 82 
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.80  E-value=0.0089  Score=36.41  Aligned_cols=100  Identities=20%  Similarity=0.233  Sum_probs=57.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCC--------C--HHHHCCCCEEEECCCCHHHHH--
Q ss_conf             0799975886789999999862997289999653007-----8600--------6--677479989999389837899--
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRY--------R--EDLLNAADVSILCLPDVASLE--   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~--------~--~~~~~~~Divf~a~p~~~s~~--   64 (311)
                      .||||+||||-+|.++++-..+| .-|++.+.-+.++     +..+        .  .+++.+.|+|++|-+...+.+  
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~   79 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDE   79 (211)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHH
T ss_conf             90789953745679999999867-98048998076766522353020002227456676635876699721578887157


Q ss_pred             --------HHHHHHHCCC-CEEEECCCCCHHHHHHHHHC-CCCCCHHH
Q ss_conf             --------9999861258-48982276303555431100-21000477
Q gi|254780294|r   65 --------IIQLIKKNGI-NSRIIDTSTAHRIAPGWVYG-FPEMDKSQ  102 (311)
Q Consensus        65 --------~~~~~~~~g~-~~~vid~ss~~R~~~~vpl~-vPEvN~~~  102 (311)
                              +...+..+|. +..|+--.+...+++++-|+ .|+...++
T Consensus        80 ~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey  127 (211)
T COG2910          80 LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEY  127 (211)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEECCCCCCHHH
T ss_conf             788899999999861597059998474205876884550589985667


No 83 
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=96.78  E-value=0.0032  Score=39.15  Aligned_cols=87  Identities=15%  Similarity=0.162  Sum_probs=57.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CC--------CCC-----CC--HHHHCCCCEEEECCCCHH---H
Q ss_conf             07999758867899999998629972899996530-07--------860-----06--677479989999389837---8
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RH--------NLR-----YR--EDLLNAADVSILCLPDVA---S   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~a--------g~~-----~~--~~~~~~~Divf~a~p~~~---s   62 (311)
                      .||.|||| |-.|+..++-|.++..-+++...-+. ++        |..     ++  ...+.++|++|+|++...   .
T Consensus        13 ~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~~ii~   91 (134)
T pfam01488        13 KKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPTPIIT   91 (134)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCCCEEC
T ss_conf             98999996-09999999999975998899954757899999998499725898513544136319999992599973648


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf             999999861258489822763035554311
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~vp   92 (311)
                      ++..+.   ......++|.+-.--.||++.
T Consensus        92 ~~~~~~---~~~~~~iiDLavPrnvd~~v~  118 (134)
T pfam01488        92 KEMVEE---ALKGLLFVDIAVPRDIEPEVG  118 (134)
T ss_pred             HHHHHH---CCCCEEEEEECCCCCCCHHHC
T ss_conf             999974---439859998347888665454


No 84 
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.76  E-value=0.0067  Score=37.19  Aligned_cols=74  Identities=15%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEE-ECC-CCCCCCCCH----------H--HHCCCCEEEECCCCHHHHHH
Q ss_conf             9079997588678999999986-2997289999-653-007860066----------7--74799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSI-PCE-ERHNLRYRE----------D--LLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l-~s~-~~ag~~~~~----------~--~~~~~Divf~a~p~~~s~~~   65 (311)
                      |.||.|||+ |-.|+.|+..-- ++..+.+... ..+ +..|++..+          .  .-.++|++++|.|.+.+++.
T Consensus        84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v  162 (211)
T COG2344          84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV  162 (211)
T ss_pred             CEEEEEECC-CHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEECCHHHHHHH
T ss_conf             034899905-7088898607423326935999961787883752488145526888889886176189997348989999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9998612584
Q gi|254780294|r   66 IQLIKKNGIN   75 (311)
Q Consensus        66 ~~~~~~~g~~   75 (311)
                      +..+.++|.+
T Consensus       163 ad~Lv~aGVk  172 (211)
T COG2344         163 ADRLVKAGVK  172 (211)
T ss_pred             HHHHHHCCCC
T ss_conf             9999983873


No 85 
>PRK06153 hypothetical protein; Provisional
Probab=96.74  E-value=0.0022  Score=40.22  Aligned_cols=10  Identities=20%  Similarity=0.132  Sum_probs=5.7

Q ss_pred             CCEEEECCCC
Q ss_conf             9899993898
Q gi|254780294|r   50 ADVSILCLPD   59 (311)
Q Consensus        50 ~Divf~a~p~   59 (311)
                      ++.-|++=|.
T Consensus       100 ~~~~FSnKP~  109 (393)
T PRK06153        100 VQHSFSNKPG  109 (393)
T ss_pred             EEEEECCCCC
T ss_conf             8787557999


No 86 
>pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent.
Probab=96.73  E-value=0.0044  Score=38.30  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CC-------CCCC----CHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             7999758867899999998629972899996530--07-------8600----667747998999938983789999998
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--RH-------NLRY----REDLLNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--~a-------g~~~----~~~~~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                      ||+|+|+ |..|..|.+-|.+..+ ++....+++  +.       +...    ..+..+++|++|+|.|.....+....+
T Consensus         1 KIg~IG~-G~mg~ai~~~l~~~g~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIilavkp~~~~~vl~~i   78 (93)
T pfam03807         1 KIGIIGA-GNMGEALARGLAAAGH-EVIIANSRNPEKAAALAEELGVGATAVSNEEAAEEADVVILAVKPEDAPEVLAEL   78 (93)
T ss_pred             CEEEECC-HHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHH
T ss_conf             9899970-0999999999997799-6127864878999999998199764589999974499899997999999999987


Q ss_pred             HHCCCCEEEECCC
Q ss_conf             6125848982276
Q gi|254780294|r   70 KKNGINSRIIDTS   82 (311)
Q Consensus        70 ~~~g~~~~vid~s   82 (311)
                      ...-.+..+||-.
T Consensus        79 ~~~~~~k~vISv~   91 (93)
T pfam03807        79 ADLLKGKLVISIT   91 (93)
T ss_pred             HHHCCCCEEEEEC
T ss_conf             6250899999809


No 87 
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.72  E-value=0.021  Score=34.06  Aligned_cols=56  Identities=20%  Similarity=0.178  Sum_probs=39.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCC
Q ss_conf             0799975886789999999862997-28999965300--78600------------------6677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER--HNLRY------------------REDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p   58 (311)
                      .||+|+|| |.||..+.-.|...+. .||.++.-.+.  .|+..                  ..+.++++|+++.+++
T Consensus         1 rKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG   77 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG   77 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCC
T ss_conf             95999996-988999999998579987799981898701769998870133059973996088788478999999067


No 88 
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.72  E-value=0.025  Score=33.63  Aligned_cols=56  Identities=16%  Similarity=0.131  Sum_probs=37.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCC--CCCCC-----------------HHHHCCCCEEEECCC
Q ss_conf             0799975886789999999862997-289999653007--86006-----------------677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERH--NLRYR-----------------EDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~a--g~~~~-----------------~~~~~~~Divf~a~p   58 (311)
                      .||+|+|| |.||+.+--.|..++. -||.++.-.+..  |+..+                 -+.++++|+++.+++
T Consensus         1 mKI~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~~~~~~i~~~~~~~l~daDvVVitaG   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCEEEECCC
T ss_conf             97999994-88899999999867998879999188984512568766241036881684099999779999998999


No 89 
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=96.67  E-value=0.017  Score=34.60  Aligned_cols=56  Identities=18%  Similarity=0.234  Sum_probs=40.9

Q ss_pred             EEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCC--CCCC-----------------C--HHHHCCCCEEEECCCC
Q ss_conf             9997588678999999986299---7289999653007--8600-----------------6--6774799899993898
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERH--NLRY-----------------R--EDLLNAADVSILCLPD   59 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~a--g~~~-----------------~--~~~~~~~Divf~a~p~   59 (311)
                      |+|+||+|.||..+.-.|..+.   ..||.++.-.+..  |+..                 .  .+.++++|++++.++.
T Consensus         1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECCC
T ss_conf             98987797799999999982899999889999589872087999998545235787399748738983799899990577


No 90 
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.65  E-value=0.014  Score=35.12  Aligned_cols=152  Identities=14%  Similarity=0.113  Sum_probs=76.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECC-CCCC----CCC-------CHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             90799975886789999999862997---289999653-0078----600-------66774799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCE-ERHN----LRY-------REDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~-~~ag----~~~-------~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      |.||+++|+ |--|+.+++=|.++..   .++....-+ +..-    +++       ..+...++|++|+|.....-.+.
T Consensus         3 mm~I~fIG~-GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~~~l~~~~~v~~~~~~~~~~~~~diI~LaVKP~~~~~v   81 (279)
T PRK07679          3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA   81 (279)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEECCHHHHHHHCCEEEEECCHHHHHHH
T ss_conf             788999876-8999999999997879997579997898499999999971966637779998449999995278999999


Q ss_pred             HHHHHHC-CCCEEEECCCCCHHHH-------HHHH--HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC-
Q ss_conf             9998612-5848982276303555-------4311--002100047765204960772584211331124788888503-
Q gi|254780294|r   66 IQLIKKN-GINSRIIDTSTAHRIA-------PGWV--YGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL-  134 (311)
Q Consensus        66 ~~~~~~~-g~~~~vid~ss~~R~~-------~~vp--l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~-  134 (311)
                      ...+... ..+..||+-.+-...+       .+.+  =+.|=++....+..  ..+..+++|..-...... -|+...+ 
T Consensus        82 ~~~i~~~~~~~~~iISi~AGi~~~~l~~~l~~~~~ivR~MPN~~~~vg~g~--t~i~~~~~~~~~~~~~v~-~lf~~~G~  158 (279)
T PRK07679         82 LTPFKEYIHNNVLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSA--TAISPSKHATAEHIQTAK-ALFETIGL  158 (279)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCHHHHHHCCC--EEECCCCCCCHHHHHHHH-HHHHHCCE
T ss_conf             999875458992999974788899999752999857983597678850577--355279999999999999-99961785


Q ss_pred             CCCCCCEEEEEECCCCCCCCCC
Q ss_conf             4556502676512333356100
Q gi|254780294|r  135 LPDRYPITINAVSGYTGGGKKL  156 (311)
Q Consensus       135 i~~~~~~~~~~~sg~sgaG~~~  156 (311)
                      ...+.--.+++.++.+|.|.+-
T Consensus       159 ~~~v~E~~~d~~TalsGSgPAf  180 (279)
T PRK07679        159 VSVVEEEDMHAVTALSGSGPAY  180 (279)
T ss_pred             EEEECHHHCCCHHHEECCHHHH
T ss_conf             9995433303210001664899


No 91 
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, 
Probab=96.60  E-value=0.0089  Score=36.41  Aligned_cols=11  Identities=9%  Similarity=0.341  Sum_probs=5.2

Q ss_pred             HHHHHHHCCCC
Q ss_conf             99999862997
Q gi|254780294|r   16 KIRSRIVQRKD   26 (311)
Q Consensus        16 ~li~lL~~hp~   26 (311)
                      ++++.|.++|.
T Consensus        28 ~~l~~l~~~~~   38 (311)
T cd05213          28 EALRRLLEKPG   38 (311)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999863799


No 92 
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.60  E-value=0.0091  Score=36.34  Aligned_cols=57  Identities=16%  Similarity=0.248  Sum_probs=41.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC------EEEEEEECCCCC----CCCC------------------CHHHHCCCCEE
Q ss_conf             0799975886789999999862997------289999653007----8600------------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD------LCLLSIPCEERH----NLRY------------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~------~~l~~l~s~~~a----g~~~------------------~~~~~~~~Div   53 (311)
                      .||+|.||+|.+|+.|+-+|.+-..      ++|+++......    |...                  .++.|+++|++
T Consensus         3 ~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~a~p~l~~i~~~~~~~~a~~~aDvv   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEECCCHHHHHCCCCEE
T ss_conf             19999888718899999999758856899705999966778677655267457437864558735228878983688789


Q ss_pred             EECCC
Q ss_conf             99389
Q gi|254780294|r   54 ILCLP   58 (311)
Q Consensus        54 f~a~p   58 (311)
                      ++..+
T Consensus        83 ii~ag   87 (325)
T cd01336          83 ILVGA   87 (325)
T ss_pred             EEECC
T ss_conf             99488


No 93 
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=96.55  E-value=0.011  Score=35.92  Aligned_cols=85  Identities=19%  Similarity=0.243  Sum_probs=53.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCHHHH-CCCCEEEECCC------------------
Q ss_conf             9079997588678999999986299728999965300786---0066774-79989999389------------------
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL---RYREDLL-NAADVSILCLP------------------   58 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~---~~~~~~~-~~~Divf~a~p------------------   58 (311)
                      |. |.|+|++|++|++|.++|.  +.+++..++..+---.   .+.+... .+-|+|+-|+.                  
T Consensus         1 M~-iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vN   77 (281)
T COG1091           1 MK-ILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVN   77 (281)
T ss_pred             CC-EEEECCCCHHHHHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHH
T ss_conf             95-8997698767999999717--78439951576555568589999998619998998732036541338989977767


Q ss_pred             CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf             83789999998612584898227630355543
Q gi|254780294|r   59 DVASLEIIQLIKKNGINSRIIDTSTAHRIAPG   90 (311)
Q Consensus        59 ~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~   90 (311)
                      ..-+...+....+.|  .++|--|++|=+|-.
T Consensus        78 a~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~  107 (281)
T COG1091          78 ATGAENLARAAAEVG--ARLVHISTDYVFDGE  107 (281)
T ss_pred             HHHHHHHHHHHHHHC--CEEEEEECCEEECCC
T ss_conf             799999999999719--769996344574389


No 94 
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.53  E-value=0.016  Score=34.91  Aligned_cols=150  Identities=13%  Similarity=0.145  Sum_probs=72.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCCC--CC----C-----C--HHHHCCCCEEEECCCCHHHHHH
Q ss_conf             079997588678999999986299---72899996530078--60----0-----6--6774799899993898378999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERHN--LR----Y-----R--EDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~ag--~~----~-----~--~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      .||+++|+ |--|+.+++=|.+..   ..++. +..++...  +.    +     .  .+..+++|++|+|.+.....+.
T Consensus         5 ~kI~fIG~-GnMg~Aii~gll~~~~~~~~~i~-v~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~d~IilavKP~~~~~v   82 (245)
T PRK07634          5 HRILFIGA-GRMAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEEL   82 (245)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCCCCEEE-EECCCCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEEECCHHHHHH
T ss_conf             91999875-89999999999977999960599-96999999999999971974227779998559999999891749999


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHH-------HHHHH--CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH-CCC
Q ss_conf             99986125848982276303555-------43110--021000477652049607725842113311247888885-034
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRIA-------PGWVY--GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKA-KLL  135 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~~-------~~vpl--~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~-~~i  135 (311)
                      .+.+.....+..||+-.+--..+       .+.+.  +.|=+.....+..  ..+..+++|....-... .-|+.. +..
T Consensus        83 l~~i~~~~~~~~iISi~AGi~i~~l~~~l~~~~~v~R~MPN~~~~v~~g~--t~~~~~~~~~~~~~~~v-~~lf~~~G~~  159 (245)
T PRK07634         83 LAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSI--SLYTMGQFVNETHQETL-QLLLRGIGTS  159 (245)
T ss_pred             HHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHCCCC--EEEECCCCCCHHHHHHH-HHHHHCCCEE
T ss_conf             99987760698899981799899999874899728994585748975881--89853887999999999-9998628549


Q ss_pred             CCCCCEEEEEECCCCCCCCCC
Q ss_conf             556502676512333356100
Q gi|254780294|r  136 PDRYPITINAVSGYTGGGKKL  156 (311)
Q Consensus       136 ~~~~~~~~~~~sg~sgaG~~~  156 (311)
                      ..+.--.++..++.+|.|.+-
T Consensus       160 ~~v~E~~~d~~TalsGSGPAy  180 (245)
T PRK07634        160 QLCTEEEVHQLTAVTGSAPAF  180 (245)
T ss_pred             EEECCCCCCCEEECCCCCHHH
T ss_conf             997641246244436770999


No 95 
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.50  E-value=0.002  Score=40.47  Aligned_cols=31  Identities=6%  Similarity=-0.185  Sum_probs=20.2

Q ss_pred             CCCCEEEEEEEEEEECCCCCCCHHHHHHHHH
Q ss_conf             4332027899998632577544899886654
Q gi|254780294|r  206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQ  236 (311)
Q Consensus       206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~  236 (311)
                      +......+|+++++.++|+.....+..+.+.
T Consensus       227 ~~~~VsatcvRVPV~~GHse~v~ve~~~~~~  257 (334)
T COG0136         227 PDIKVSATCVRVPVFYGHSEAVTVEFKKDVD  257 (334)
T ss_pred             CCCCEEEEEEECCEECCCCEEEEEEECCCCC
T ss_conf             9882578999724161520678998569899


No 96 
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.49  E-value=0.019  Score=34.36  Aligned_cols=84  Identities=17%  Similarity=0.230  Sum_probs=59.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEE-ECC-CCCCCCCCH-----------H-HHCCCCEEEECCCCHHHHHH
Q ss_conf             907999758867899999998629-97289999-653-007860066-----------7-74799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSI-PCE-ERHNLRYRE-----------D-LLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l-~s~-~~ag~~~~~-----------~-~~~~~Divf~a~p~~~s~~~   65 (311)
                      +.|++|||| |--|+.|++--.-+ ..|+++.+ ..+ +..|+++..           . .-.++++++.|.|.+.+++.
T Consensus        84 ~~~v~lvGa-GnLG~AL~~y~gf~~~gf~Iva~FD~dp~kiG~~i~gi~V~~i~~L~~~i~~~~i~iaIiaVP~~~AQ~v  162 (211)
T PRK05472         84 TTNVALVGA-GNLGRALLNYNGFKKRGFKIVAAFDVDPEKVGTKIGGIPVYHIDELEEVIKENDIEIAILTVPAEAAQEV  162 (211)
T ss_pred             CCEEEEECC-CHHHHHHHHCCCHHHCCCEEEEEECCCHHHCCCEECCEEEECHHHHHHHHHHHCCCEEEEECCHHHHHHH
T ss_conf             750899888-7799999848762318978999974897885988388387349999999998199389995576889999


Q ss_pred             HHHHHHCCCCEEEECCCCCHHH
Q ss_conf             9998612584898227630355
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRI   87 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~   87 (311)
                      +..+.++|..  -|=|=+..++
T Consensus       163 ad~Lv~aGIk--~IlNFap~~L  182 (211)
T PRK05472        163 ADRLVEAGIK--GILNFAPVRL  182 (211)
T ss_pred             HHHHHHHCCE--EEEECCCCCC
T ss_conf             9999981983--9997687244


No 97 
>KOG1502 consensus
Probab=96.46  E-value=0.014  Score=35.11  Aligned_cols=57  Identities=16%  Similarity=0.151  Sum_probs=38.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCCC------------HHHHCCCCEEEEC
Q ss_conf             9079997588678999999986299728999965300------------786006------------6774799899993
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRYR------------EDLLNAADVSILC   56 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~~------------~~~~~~~Divf~a   56 (311)
                      +.+|+|-|||||+|..++++|.+|-+.=...+-+.+.            +++++.            +..+++||.||-.
T Consensus         6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~   85 (327)
T KOG1502           6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT   85 (327)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCCEEEEE
T ss_conf             72799948820899999999986899899997086305658999865157544258852435513599997078789991


Q ss_pred             C
Q ss_conf             8
Q gi|254780294|r   57 L   57 (311)
Q Consensus        57 ~   57 (311)
                      +
T Consensus        86 A   86 (327)
T KOG1502          86 A   86 (327)
T ss_pred             C
T ss_conf             7


No 98 
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.45  E-value=0.03  Score=33.17  Aligned_cols=55  Identities=18%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCC
Q ss_conf             799975886789999999862997289999653007--8600-------------------6677479989999389
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLP   58 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p   58 (311)
                      ||+|+|| |.||..+--+|...+..|+.++.-.+..  |+..                   .-++.+++|+++.+++
T Consensus         9 KV~IIGa-G~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVitAG   84 (322)
T PTZ00082          9 KISLIGS-GNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVTAG   84 (322)
T ss_pred             CEEEECC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCC
T ss_conf             2999896-989999999996389977999978898008899987663644688857983799999779999998988


No 99 
>PRK05442 malate dehydrogenase; Provisional
Probab=96.41  E-value=0.012  Score=35.58  Aligned_cols=57  Identities=18%  Similarity=0.281  Sum_probs=39.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC------CCCEEEEEEECCCC----CCCCC------------------CHHHHCCCCEE
Q ss_conf             0799975886789999999862------99728999965300----78600------------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQ------RKDLCLLSIPCEER----HNLRY------------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~------hp~~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div   53 (311)
                      .||+|+||+|.+|+.|+-+|..      ...++|+++.....    .|...                  .++.|+++|+|
T Consensus         5 ~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~a~p~l~~v~~~~~~~~a~~~aDvv   84 (325)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVA   84 (325)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCCCCCCCEEEECCHHHHHCCCCEE
T ss_conf             29999888868889999998661320899846999965777666556677342116754448768508878983799889


Q ss_pred             EECCC
Q ss_conf             99389
Q gi|254780294|r   54 ILCLP   58 (311)
Q Consensus        54 f~a~p   58 (311)
                      +...+
T Consensus        85 iitag   89 (325)
T PRK05442         85 LLVGA   89 (325)
T ss_pred             EECCC
T ss_conf             98078


No 100
>PRK08818 prephenate dehydrogenase; Provisional
Probab=96.41  E-value=0.02  Score=34.23  Aligned_cols=80  Identities=20%  Similarity=0.222  Sum_probs=59.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH-HHHCCCCEEEECCCCHHHHHHHHH---HH---HCCCC
Q ss_conf             799975886789999999862997289999653007860066-774799899993898378999999---86---12584
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE-DLLNAADVSILCLPDVASLEIIQL---IK---KNGIN   75 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~-~~~~~~Divf~a~p~~~s~~~~~~---~~---~~g~~   75 (311)
                      .|+|+|.||.-|..+-+.|.+|  +.+..+......++.++. ....+.|+++++.|-+++....+.   .+   ++|  
T Consensus         6 iV~iiG~~~~~G~w~a~flr~~--~~~~vig~dp~~~~s~D~~~l~~~aDIVIisVPI~~T~~vI~E~~~~Ap~~~~g--   81 (373)
T PRK08818          6 VVGIVGIAGAYGRWLAQFLRTR--MQLEVIGYDPADPGSLDPATLLARADVLVFSAPIRHTAALIERYVALAGARAAG--   81 (373)
T ss_pred             EEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCC--
T ss_conf             3899626632658999998743--661788548877566698898623898999778032388998877416556788--


Q ss_pred             EEEECCCCCHH
Q ss_conf             89822763035
Q gi|254780294|r   76 SRIIDTSTAHR   86 (311)
Q Consensus        76 ~~vid~ss~~R   86 (311)
                      ..+.|.+|--.
T Consensus        82 sLLmDVTSIKe   92 (373)
T PRK08818         82 QLWLDVTSIKQ   92 (373)
T ss_pred             CEEEEEHHHHH
T ss_conf             56885033406


No 101
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.40  E-value=0.044  Score=32.11  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=28.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCC
Q ss_conf             079997588678999999986299-72899996530
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEE   36 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~   36 (311)
                      .||+|+|| |.||..+.-.|..++ ..||.++.-.+
T Consensus         1 mKI~IiGa-G~VG~~~a~~l~~~~l~~el~L~Di~~   35 (312)
T PRK06223          1 MKISIIGA-GNVGATLAHLLALKELGKDVVLFDIPE   35 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             97999996-989999999998579987489976999


No 102
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.37  E-value=0.057  Score=31.42  Aligned_cols=56  Identities=18%  Similarity=0.213  Sum_probs=41.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC--CCCCC----------------C---HHHHCCCCEEEECCC
Q ss_conf             07999758867899999998629972-8999965300--78600----------------6---677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER--HNLRY----------------R---EDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~--ag~~~----------------~---~~~~~~~Divf~a~p   58 (311)
                      .||+|+|| |.||+.+.-+|...... |+.++.=.+.  .|...                .   -.+++++|+|+++++
T Consensus         1 ~KV~viGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG   78 (313)
T ss_pred             CEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEECC
T ss_conf             93999898-7478999999962555665999974666564011025334000267618834787023169989999688


No 103
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.29  E-value=0.028  Score=33.37  Aligned_cols=57  Identities=21%  Similarity=0.362  Sum_probs=40.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------CC---------------------CC---CHHHHCCCC
Q ss_conf             0799975886789999999862997289999653007------86---------------------00---667747998
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------NL---------------------RY---REDLLNAAD   51 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------g~---------------------~~---~~~~~~~~D   51 (311)
                      .||+|+|. ||||..-=-+|+++ --++..+.-.+++      |+                     ++   .+....+.|
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~-GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAEL-GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCC
T ss_conf             91589888-55688789999870-98489995788999998679999767058999984623572798747888962597


Q ss_pred             EEEECCCCH
Q ss_conf             999938983
Q gi|254780294|r   52 VSILCLPDV   60 (311)
Q Consensus        52 ivf~a~p~~   60 (311)
                      ++|.|+|..
T Consensus        79 v~fIavgTP   87 (414)
T COG1004          79 VVFIAVGTP   87 (414)
T ss_pred             EEEEECCCC
T ss_conf             799974899


No 104
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=96.29  E-value=0.015  Score=35.09  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9079997588678999999986299728999965
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |+||-|.|+||++|..|++.|.++-.-.+..+..
T Consensus         1 MKkILVTGg~GFIGs~Lv~~Ll~~~~~~v~~~d~   34 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDK   34 (355)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf             9969993787579999999999769988999828


No 105
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.26  E-value=0.074  Score=30.71  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=27.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCC
Q ss_conf             079997588678999999986299-72899996530
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEE   36 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~   36 (311)
                      -||+|+|| |.||..+--.|..++ .-||.++.-.+
T Consensus         4 ~Kv~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~   38 (312)
T cd05293           4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             86999897-888999999999669988799993889


No 106
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.23  E-value=0.026  Score=33.50  Aligned_cols=96  Identities=9%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC--------------------------
Q ss_conf             7999758867899999998629972899---------------99653007860--------------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR--------------------------   41 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~--------------------------   41 (311)
                      ||.|||| |-.|-|+++.|..--.-+|.               ++..++..|+.                          
T Consensus         1 KVlvvGa-GglGce~~k~La~~Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9899948-887999999999839986999759900567701302446442688229999999998789977999805568


Q ss_pred             ----CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHH
Q ss_conf             ----066774799899993898378999999861258489822763035554311002100047
Q gi|254780294|r   42 ----YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKS  101 (311)
Q Consensus        42 ----~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~  101 (311)
                          +.+++++++|+|+.|+++-.++.|+....-.- .+..||-+. ..++-.+-.++|...+-
T Consensus        80 ~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~-~~PLIegGt-~G~~Gqv~~IiP~~T~C  141 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL-IVPLIESGT-EGFKGNAQVILPGMTEC  141 (234)
T ss_pred             CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHH-CCCEEEECC-CCCEEEEEEEECCCCCC
T ss_conf             621057988852999998857888999999999980-998597202-46147999983899778


No 107
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913    dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.  dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH  ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=96.16  E-value=0.0073  Score=36.96  Aligned_cols=83  Identities=14%  Similarity=0.309  Sum_probs=58.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCH------------------------HHHCCC------
Q ss_conf             79997588678999999986299728999965300--7860066------------------------774799------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYRE------------------------DLLNAA------   50 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~~------------------------~~~~~~------   50 (311)
                      ||.|.||+|.+|++|.+.|.+ +..+...+.++..  -|.+...                        ....+|      
T Consensus         1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE~~   79 (317)
T TIGR01214         1 RILITGANGQLGRELVQQLSK-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAESD   79 (317)
T ss_pred             CEEEECCCCHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCCCC
T ss_conf             978873875679999997078-8827864368777611336544062246889999985287537623011010000377


Q ss_pred             -CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf             -899993898378999999861258489822763035554
Q gi|254780294|r   51 -DVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        51 -Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~   89 (311)
                       |.+ |+.-.-.+..+|..+.+.|  .++|=.|.||=+|-
T Consensus        80 ~~~A-yavNa~A~~~lA~~A~~~G--a~~vh~STDYVFDG  116 (317)
T TIGR01214        80 PEKA-YAVNALAPQNLARAAARVG--ARLVHISTDYVFDG  116 (317)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHCC--CEEEEEEECEEECC
T ss_conf             7787-6574078999999998669--15999863423447


No 108
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.12  E-value=0.037  Score=32.61  Aligned_cols=66  Identities=21%  Similarity=0.299  Sum_probs=44.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC-------------------HHHHCCCCEEEE
Q ss_conf             9079997588678999999986299728999965300------786006-------------------677479989999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR-------------------EDLLNAADVSIL   55 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~-------------------~~~~~~~Divf~   55 (311)
                      |.||+|+|| |.+|.-+=-.|.+. ..++.+++..+.      .|.++.                   ......+|++|+
T Consensus         2 mmkI~IiGa-GAvG~~~a~~L~~a-G~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv   79 (341)
T PRK08229          2 MARICVLGA-GSIGCYLGGRLAAA-GADVTLIGRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLV   79 (341)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEE
T ss_conf             477999896-79999999999858-9987999567899999967909963899768963661561488656589998999


Q ss_pred             CCCCHHHHHHHHH
Q ss_conf             3898378999999
Q gi|254780294|r   56 CLPDVASLEIIQL   68 (311)
Q Consensus        56 a~p~~~s~~~~~~   68 (311)
                      |+=.-...+.++.
T Consensus        80 ~vKa~~~~~a~~~   92 (341)
T PRK08229         80 TVKSAATADAAAA   92 (341)
T ss_pred             EECCCCHHHHHHH
T ss_conf             7075788999999


No 109
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.12  E-value=0.063  Score=31.14  Aligned_cols=55  Identities=15%  Similarity=0.118  Sum_probs=39.1

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCCC
Q ss_conf             99975886789999999862997289999653007--8600-------------------66774799899993898
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p~   59 (311)
                      |+|||| |.||..+--.|..++..||.++.-.+..  |...                   .-++++++|+++.+++.
T Consensus         1 V~IIGa-G~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCC
T ss_conf             989896-8889999999985799679998099980057988776132015898589947887994799899990677


No 110
>COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
Probab=96.11  E-value=0.055  Score=31.52  Aligned_cols=112  Identities=19%  Similarity=0.277  Sum_probs=73.9

Q ss_pred             EEEEECCCC---HHHHHHHHHHHCCCCEEEEEEECCC--CCCCC-CC--HHHHCCCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf             799975886---7899999998629972899996530--07860-06--6774799899993898378999999861258
Q gi|254780294|r    3 KIFIDGEHG---TTGLKIRSRIVQRKDLCLLSIPCEE--RHNLR-YR--EDLLNAADVSILCLPDVASLEIIQLIKKNGI   74 (311)
Q Consensus         3 kVaIvGATG---~vG~~li~lL~~hp~~~l~~l~s~~--~ag~~-~~--~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~   74 (311)
                      .||++||++   .+|.+.++.|.+...-.+.-+.-..  -.|.+ |.  .+.....|++|.++|...+.+....+-++|.
T Consensus        12 svavigas~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dlav~~v~~~~~~~i~~~~~~kGv   91 (598)
T COG1042          12 SIAVIGASERPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLAVIVVPAKVVPEIVHELGEKGV   91 (598)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCC
T ss_conf             37887146875215799999998568885574276532336631464075578887706898524456899987200587


Q ss_pred             CEEEECCCCCHHHHHH-HHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             4898227630355543-1100210004776520496077258421
Q gi|254780294|r   75 NSRIIDTSTAHRIAPG-WVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        75 ~~~vid~ss~~R~~~~-vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                      ...|+. ++-||-... ..-...++.+-   ..+....+--|||.
T Consensus        92 ~~~i~i-s~gf~e~~~~~~~~e~~~~~~---a~~~~~rligPn~~  132 (598)
T COG1042          92 KGAIVI-SAGFREAGEEGMELEKELVEA---ARKYGMRIIGPNCL  132 (598)
T ss_pred             CEEEEE-CHHHHHHHHHHHHHHHHHHHH---HHHCCCEEECCCCC
T ss_conf             358996-245678877676778899999---88559638623324


No 111
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.05  E-value=0.099  Score=29.95  Aligned_cols=56  Identities=16%  Similarity=0.160  Sum_probs=37.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCC--CCCC-----------------CHHHHCCCCEEEECCC
Q ss_conf             0799975886789999999862997-289999653007--8600-----------------6677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERH--NLRY-----------------REDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~a--g~~~-----------------~~~~~~~~Divf~a~p   58 (311)
                      .||+|||| |.||..+--.|..++. .||.++.-.+..  |+..                 +-++.+++|+++.+++
T Consensus         7 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~~~~i~~gdy~~~~daDvVVitAG   82 (315)
T PRK00066          7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCEEEECCC
T ss_conf             84999997-98899999999866998889998089871078999888541236884797399999679999998999


No 112
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.01  E-value=0.042  Score=32.23  Aligned_cols=81  Identities=21%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------CCCCC------C---------HHHHCCCCEEEEC
Q ss_conf             9079997588678999999986299728999965300---------78600------6---------6774799899993
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------HNLRY------R---------EDLLNAADVSILC   56 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------ag~~~------~---------~~~~~~~Divf~a   56 (311)
                      |.||+|+|| |.=|..|-.+|.+.- .+++...-++.         ...+|      .         .+..+++|+++++
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a   78 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA   78 (329)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE
T ss_conf             961899817-837999999999669-846999628999999973476701059962886322246899997229999997


Q ss_pred             CCCHHHHHHHHHHH---HCCCCEEEECCCCCH
Q ss_conf             89837899999986---125848982276303
Q gi|254780294|r   57 LPDVASLEIIQLIK---KNGINSRIIDTSTAH   85 (311)
Q Consensus        57 ~p~~~s~~~~~~~~---~~g~~~~vid~ss~~   85 (311)
                      +|+..-++++..+.   ..+  ..++..+.-+
T Consensus        79 vPs~~~r~v~~~l~~~l~~~--~~iv~~sKGi  108 (329)
T COG0240          79 VPSQALREVLRQLKPLLLKD--AIIVSATKGL  108 (329)
T ss_pred             CCHHHHHHHHHHHHHHCCCC--CEEEEEECCC
T ss_conf             87578999999876433678--7499974465


No 113
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.00  E-value=0.037  Score=32.60  Aligned_cols=90  Identities=14%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-------------HHHHCCCCEEEECCCCHH---HHHH
Q ss_conf             079997588678999999986299728999965300786006-------------677479989999389837---8999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-------------EDLLNAADVSILCLPDVA---SLEI   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-------------~~~~~~~Divf~a~p~~~---s~~~   65 (311)
                      .||.|||| |-.|+...+-|.++..-+++...-+......+.             ...+.++|++|+|++...   .++.
T Consensus       183 ~~vlviGa-Gem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l~~~l~~~DvvisaT~s~~~ii~~~~  261 (429)
T PRK00045        183 KKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGAEAIPLEELPEALAEADIVISSTAAPHPIITKGM  261 (429)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCHHH
T ss_conf             65999767-48999999999855998499975867789999997598897499999999658999994489975027999


Q ss_pred             HHHHHHC--CCCEEEECCCCCHHHHHHHH
Q ss_conf             9998612--58489822763035554311
Q gi|254780294|r   66 IQLIKKN--GINSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        66 ~~~~~~~--g~~~~vid~ss~~R~~~~vp   92 (311)
                      .+.....  +....+||.+-.--.||.+.
T Consensus       262 ~~~~~~~r~~~~~~iiDLavPRdidp~v~  290 (429)
T PRK00045        262 VERALKQRRHRPLLLIDLAVPRDIEPEVG  290 (429)
T ss_pred             HHHHHHHCCCCCEEEEECCCCCCCCHHHC
T ss_conf             99998734699569996168877744344


No 114
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=95.94  E-value=0.024  Score=33.77  Aligned_cols=112  Identities=11%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC--------------------------
Q ss_conf             79997588678999999986299728999---------------9653007860--------------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR--------------------------   41 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~--------------------------   41 (311)
                      ||.|||| |-.|-|+++.|..--..+|+.               |..++..|+.                          
T Consensus         1 KVlvvGa-GglG~e~lk~La~~Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf             9899888-888999999999828985999719922610146682768221887099999999998888967998616766


Q ss_pred             ---CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC
Q ss_conf             ---06677479989999389837899999986125848982276303555431100210004776520496077258421
Q gi|254780294|r   42 ---YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY  118 (311)
Q Consensus        42 ---~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~  118 (311)
                         +..+++++.|+|+.|+++-.++.|+....-.- ....||- +...+.-.+-.++|...+-..- ..+..-.+-|-|+
T Consensus        80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~-~~PlIeg-Gt~G~~Gqv~viiP~~T~cY~c-~~~~~~~~~P~CT  156 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAA-DVPLIES-GTTGFLGQVQVIKKGKTECYEC-QPKETPKTFPVCT  156 (312)
T ss_pred             CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEE-ECCCCEEEEEEEECCCCCCCCC-CCCCCCCCCCEEE
T ss_conf             86434988962999997667899999999999983-9975972-0246413799984897567788-7899888886041


No 115
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.93  E-value=0.063  Score=31.14  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=55.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-----CEEEEEEECCCCC---CC-------------CCC------------HHHH-
Q ss_conf             079997588678999999986299-----7289999653007---86-------------006------------6774-
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-----DLCLLSIPCEERH---NL-------------RYR------------EDLL-   47 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-----~~~l~~l~s~~~a---g~-------------~~~------------~~~~-   47 (311)
                      +||||+|- |.||+.++++|.++.     .+++..++.++..   +.             +..            ++.. 
T Consensus         3 i~I~l~G~-G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   81 (316)
T PRK08374          3 VKVSLFGF-GTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEIVE   81 (316)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHC
T ss_conf             12999933-88999999999971887298659999995567634565556655533202543445530120489899834


Q ss_pred             -CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             -7998999938983789999998612584898227630
Q gi|254780294|r   48 -NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        48 -~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~   84 (311)
                       .+.|+++=+.+.+.+.++...+.++|..  ||....+
T Consensus        82 ~~~~dvvVd~t~~~~~~~~~~~al~~G~h--VVTANK~  117 (316)
T PRK08374         82 EVDPDIVVDVSSWDEAHEWYLTALKEGKS--VVTSNKP  117 (316)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHHCCCC--EECCCHH
T ss_conf             88999899879996999999999988992--9978869


No 116
>pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones.
Probab=95.91  E-value=0.055  Score=31.52  Aligned_cols=30  Identities=13%  Similarity=0.137  Sum_probs=24.5

Q ss_pred             EECCCCHHHHHHHHHHHCC-CCEEEEEEECC
Q ss_conf             9758867899999998629-97289999653
Q gi|254780294|r    6 IDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE   35 (311)
Q Consensus         6 IvGATG~vG~~li~lL~~h-p~~~l~~l~s~   35 (311)
                      |-|+||++|+.|++.|.++ +..+++.+.-.
T Consensus         2 VTGg~GFIGs~lv~~Ll~~g~~~~V~~~d~~   32 (280)
T pfam01073         2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLR   32 (280)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             0586759999999999977997579998788


No 117
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.88  E-value=0.027  Score=33.44  Aligned_cols=79  Identities=19%  Similarity=0.242  Sum_probs=53.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-------CC---HHHHCCCCEEEECCCCHHHHH-HHH---
Q ss_conf             0799975886789999999862997289999653007860-------06---677479989999389837899-999---
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-------YR---EDLLNAADVSILCLPDVASLE-IIQ---   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-------~~---~~~~~~~Divf~a~p~~~s~~-~~~---   67 (311)
                      .|||+||- |.-|..|-+-|.+. .+++....-+.++-..       ..   .+...++|++|+|+|++..-+ ...   
T Consensus         2 MkIgfIGl-G~MG~~ma~~L~~~-G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~~dvvi~~l~~~~~v~~v~~g~~   79 (295)
T PRK11559          2 MKVGFIGL-GIMGKPMSKNLLKA-GYSLVVYDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN   79 (295)
T ss_pred             CEEEEECC-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHCCC
T ss_conf             78999840-57699999999978-99589992999999999985992039999998438878996689810776630776


Q ss_pred             ---HHHHCCCCEEEECCCCC
Q ss_conf             ---98612584898227630
Q gi|254780294|r   68 ---LIKKNGINSRIIDTSTA   84 (311)
Q Consensus        68 ---~~~~~g~~~~vid~ss~   84 (311)
                         .....|  ..+||.|.-
T Consensus        80 gi~~~~~~g--~iiid~sT~   97 (295)
T PRK11559         80 GIIEGAKPG--TVLIDMSSI   97 (295)
T ss_pred             CCHHCCCCC--CEEEECCCC
T ss_conf             601138999--889989999


No 118
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436    This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm.
Probab=95.85  E-value=0.13  Score=29.30  Aligned_cols=170  Identities=15%  Similarity=0.199  Sum_probs=109.4

Q ss_pred             CCCCCC---HHHHCCCCEEEECCCCHHHHHHHH-HHHHCCCCEE--------EECCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             786006---677479989999389837899999-9861258489--------8227630355543110021000477652
Q gi|254780294|r   38 HNLRYR---EDLLNAADVSILCLPDVASLEIIQ-LIKKNGINSR--------IIDTSTAHRIAPGWVYGFPEMDKSQKEK  105 (311)
Q Consensus        38 ag~~~~---~~~~~~~Divf~a~p~~~s~~~~~-~~~~~g~~~~--------vid~ss~~R~~~~vpl~vPEvN~~~~~~  105 (311)
                      +|-++.   +++++.+||++=|+|.|+-.++=+ ...+.|.++.        ++|.|-.           .--|   .+.
T Consensus        61 aGi~V~GT~edL~ek~DIvVD~TP~G~GaknK~G~Yek~g~kAiFQGGEKaeva~~SF~-----------a~~N---Y~~  126 (335)
T TIGR01546        61 AGIKVAGTVEDLLEKVDIVVDATPEGVGAKNKEGIYEKLGLKAIFQGGEKAEVADISFS-----------ALAN---YEE  126 (335)
T ss_pred             CCCEEECCHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHH-----------HHHH---HHH
T ss_conf             68704425787310428888568787443231103665076136437830124421255-----------5510---676


Q ss_pred             CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             04960772584211331124788888503455650267651233335610000001344432234332222234444434
Q gi|254780294|r  106 IRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHL  185 (311)
Q Consensus       106 ~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  185 (311)
                      .-++.+|=---|.||+++-.|-|+-+.-+++++.-+.+          |.+-+..+-+.-+.   +...|.+...=..|.
T Consensus       127 alGKdY~RVVSCNTTgL~RTln~ind~~~v~kVrAv~v----------RRaADp~~vKkGPI---NaivP~P~TvPSHHg  193 (335)
T TIGR01546       127 ALGKDYVRVVSCNTTGLVRTLNAINDLSKVEKVRAVMV----------RRAADPKEVKKGPI---NAIVPDPATVPSHHG  193 (335)
T ss_pred             HHCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEE----------ECCCCHHHCCCCCC---CCCCCCCCCCCCCCC
T ss_conf             31786389984162678876643323306105899998----------53789334261873---653783178798877


Q ss_pred             CCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH
Q ss_conf             20133216711368875203433202789999863257754489988665422
Q gi|254780294|r  186 PEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY  238 (311)
Q Consensus       186 ~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~  238 (311)
                      |....... ..++.-....+|..-=|.+.+.++   +.+.++.+|+.+.++..
T Consensus       194 pDV~tVi~-~lnI~TmA~~vPTTlMH~H~i~ve---Lk~~v~~~Di~d~lenT  242 (335)
T TIGR01546       194 PDVQTVIR-DLNIATMALIVPTTLMHVHSIMVE---LKDKVEKEDILDVLENT  242 (335)
T ss_pred             CCHHHHHC-CCCCCEEEEECCCHHCCCCEEEEE---ECCCCCHHHHHHHHCCC
T ss_conf             64243412-358001234314012141014677---35765645687653288


No 119
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=95.85  E-value=0.076  Score=30.65  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=37.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCCC
Q ss_conf             99975886789999999862997-28999965300--78600------------------66774799899993898
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER--HNLRY------------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p~   59 (311)
                      |+|+|| |.||+.+--.|..++. -||.++.-.+.  .|...                  .-++++++|+++.+++.
T Consensus         1 V~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~daDvvVitaG~   76 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCC
T ss_conf             989896-8899999999986799887999818998115688887725634688539827988996799999987898


No 120
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=95.84  E-value=0.029  Score=33.25  Aligned_cols=95  Identities=9%  Similarity=0.089  Sum_probs=58.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-----CCEEEEEE---------------ECCCCCCCC---------------------
Q ss_conf             7999758867899999998629-----97289999---------------653007860---------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-----KDLCLLSI---------------PCEERHNLR---------------------   41 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-----p~~~l~~l---------------~s~~~ag~~---------------------   41 (311)
                      ||-+||| |..|-|+++.|+--     |..+++.+               ..++..|+.                     
T Consensus         1 kvlvVGA-GgIGCEllKnlal~G~~~~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk~Ks~vA~~~v~~~np~~~i~~~   79 (435)
T cd01490           1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL   79 (435)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf             9899937-764189999999838786898808997088473357534427564448973999999999987899747860


Q ss_pred             -----------CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCH
Q ss_conf             -----------06677479989999389837899999986125848982276303555431100210004
Q gi|254780294|r   42 -----------YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDK  100 (311)
Q Consensus        42 -----------~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~  100 (311)
                                 +.++++++.|+|+.||++-.++.|+....-.- .+..||. +..-+.-.+..++|.+.+
T Consensus        80 ~~~v~~~te~~f~~~f~~~~d~v~naLDNv~aR~yv~~~Cv~~-~~PLiEs-GT~G~kG~vqviiP~~Te  147 (435)
T cd01490          80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYY-RKPLLES-GTLGTKGNTQVVIPHLTE  147 (435)
T ss_pred             CCCCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEC-CCCCCCCCEEEEECCCCC
T ss_conf             2545677423367767843889998857889999999999974-9983744-678767536998378622


No 121
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.83  E-value=0.051  Score=31.71  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=52.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECCCCC-----CCC-------------C----------C-
Q ss_conf             079997588678999999986299---------7289999653007-----860-------------0----------6-
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCEERH-----NLR-------------Y----------R-   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~~~a-----g~~-------------~----------~-   43 (311)
                      +||+|+|. |.||+.++++|.++.         .+++..++.++..     |..             +          . 
T Consensus         3 i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (342)
T PRK06270          3 MKIALVGF-GGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEIDG   81 (342)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH
T ss_conf             31999876-88999999999987999999849978999999165433576678989998766411650003200012789


Q ss_pred             HHHH--CCCCEEEECC-----CCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             6774--7998999938-----98378999999861258489822763
Q gi|254780294|r   44 EDLL--NAADVSILCL-----PDVASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        44 ~~~~--~~~Divf~a~-----p~~~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      .+.+  .++|+++=++     +.+.+.+|..++.++|..  ||....
T Consensus        82 ~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~--VVTANK  126 (342)
T PRK06270         82 LEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKH--VVTSNK  126 (342)
T ss_pred             HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE--EECCCC
T ss_conf             998427799989993044677748899999999977994--999887


No 122
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.83  E-value=0.094  Score=30.09  Aligned_cols=55  Identities=16%  Similarity=0.131  Sum_probs=38.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCC
Q ss_conf             79997588678999999986299-7289999653007--8600-------------------6677479989999389
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLP   58 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p   58 (311)
                      ||+|||| |.||..+--.|..++ .-||.++.-.+..  |+..                   .-++.+++|+++.+++
T Consensus         1 KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG   77 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCC
T ss_conf             9899996-9899999999985699887999928898237999987612035899865866799899469999998677


No 123
>pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model.
Probab=95.78  E-value=0.066  Score=31.03  Aligned_cols=70  Identities=20%  Similarity=0.329  Sum_probs=51.4

Q ss_pred             CHHHHHHHHHHHCCC---CEEEEEEECCCC--CCCC-------CC---HHHHC--CCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf             678999999986299---728999965300--7860-------06---67747--9989999389837899999986125
Q gi|254780294|r   11 GTTGLKIRSRIVQRK---DLCLLSIPCEER--HNLR-------YR---EDLLN--AADVSILCLPDVASLEIIQLIKKNG   73 (311)
Q Consensus        11 G~vG~~li~lL~~hp---~~~l~~l~s~~~--ag~~-------~~---~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g   73 (311)
                      |.||+.+.++|.++.   .+++..++.+..  +...       +.   ++.+.  ++|+++=|.|.+.+.+++..+.++|
T Consensus         3 G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~~~~~aL~~G   82 (116)
T pfam03447         3 GAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAALLGDEPVTLDLDDLVADPRPDVVVECASSEAVAEYVLKALKAG   82 (116)
T ss_pred             CCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf             70289999999949203567999998478343232124666715779999961889989998899489999999999879


Q ss_pred             CCEEEECCC
Q ss_conf             848982276
Q gi|254780294|r   74 INSRIIDTS   82 (311)
Q Consensus        74 ~~~~vid~s   82 (311)
                      ..  |+-.+
T Consensus        83 kh--VVTaN   89 (116)
T pfam03447        83 KH--VVTAS   89 (116)
T ss_pred             CE--EEEEC
T ss_conf             98--99907


No 124
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.72  E-value=0.06  Score=31.29  Aligned_cols=79  Identities=14%  Similarity=0.115  Sum_probs=50.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC--------CC--------------CHHHHCCCCEEEECCCC
Q ss_conf             079997588678999999986299728999965300786--------00--------------66774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL--------RY--------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~--------~~--------------~~~~~~~~Divf~a~p~   59 (311)
                      .++.|+|+||-||+..-++|.+. -.++++++-+...-+        ++              ....+.+.|++|.+...
T Consensus        29 ~~~~V~G~tG~vG~~~A~~lA~~-Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adiV~~a~aA  107 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA  107 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHH
T ss_conf             88999858857899999999983-99799995878889999999999709873113578877899774669899964277


Q ss_pred             HHHHHHHH-HHHHCCCCEEEECCCC
Q ss_conf             37899999-9861258489822763
Q gi|254780294|r   60 VASLEIIQ-LIKKNGINSRIIDTST   83 (311)
Q Consensus        60 ~~s~~~~~-~~~~~g~~~~vid~ss   83 (311)
                      ++-.--.+ +..+.+  .+++|...
T Consensus       108 Gv~~~~~~~~~~k~l--~Vv~DVNA  130 (194)
T cd01078         108 GVELLEKLAWAPKPL--AVAADVNA  130 (194)
T ss_pred             HHHHHHHHHHCCCCC--EEEEECCC
T ss_conf             788878888508886--59986589


No 125
>pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.
Probab=95.67  E-value=0.14  Score=29.07  Aligned_cols=31  Identities=19%  Similarity=0.384  Sum_probs=24.2

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             99975886789999999862997289999653
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |-|.||||++|+.|++.|.++ ..++..+.-+
T Consensus         1 ILItGasGfiG~~l~~~L~~~-g~~v~~~~r~   31 (235)
T pfam01370         1 ILVTGGTGFIGSALVRRLLQE-GYEVIVLGRR   31 (235)
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             799728979999999999978-7989999899


No 126
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.64  E-value=0.095  Score=30.05  Aligned_cols=87  Identities=15%  Similarity=0.131  Sum_probs=57.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CC----------------CHHHH
Q ss_conf             9079997588678999999986299728999965300786-----------------00----------------66774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RY----------------REDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~----------------~~~~~   47 (311)
                      |.||||||| |..|+.+-.+++.+ .+++.++..+..+-.                 ++                +-+.+
T Consensus         3 i~~VaViGa-G~mG~~IA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~   80 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL   80 (282)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf             268999897-88999999999957-9938999799899999999999999999970886426699999526366888896


Q ss_pred             CCCCEEEECCCCHHHHHH--HHHHHHC-CCCEEEECCCCCHHHHH
Q ss_conf             799899993898378999--9998612-58489822763035554
Q gi|254780294|r   48 NAADVSILCLPDVASLEI--IQLIKKN-GINSRIIDTSTAHRIAP   89 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~~--~~~~~~~-g~~~~vid~ss~~R~~~   89 (311)
                      +++|+|+=|.|....-+-  -.++.+. ..++.+-+|+|.+....
T Consensus        81 ~~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is~  125 (282)
T PRK05808         81 KDADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLSITE  125 (282)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf             759999987756345569999999955799848997588776699


No 127
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=95.56  E-value=0.15  Score=28.85  Aligned_cols=142  Identities=15%  Similarity=0.131  Sum_probs=86.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------CCCC----------CHHHHCCCCEEEECCCC--HH
Q ss_conf             799975886789999999862997289999653007---------8600----------66774799899993898--37
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------NLRY----------REDLLNAADVSILCLPD--VA   61 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g~~~----------~~~~~~~~Divf~a~p~--~~   61 (311)
                      -+=|.|||||+|.-..+-|..| +... .|++++++         |+..          -+...+..++|+.|++.  ..
T Consensus         8 d~iiYGAtGy~G~lvae~l~~~-g~~~-aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt~~   85 (382)
T COG3268           8 DIIIYGATGYAGGLVAEYLARE-GLTA-ALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYTRY   85 (382)
T ss_pred             EEEEECCCCCHHHHHHHHHHHC-CCCH-HHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCC
T ss_conf             3899746552158999999974-8864-3216888999889985096644467788899999974266899614661202


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC-----
Q ss_conf             899999986125848982276303555431100210004776520496077258421133112478888850345-----
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLP-----  136 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~-----  136 (311)
                      +..++...+..|.  -+.|.++.--.-.   ..+--.+.++  .-.+.+||.+-|--.++.=+.++.|++.....     
T Consensus        86 g~plv~aC~~~GT--dY~DiTGEi~~fe---~~i~~yh~~A--~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~d~~~~~  158 (382)
T COG3268          86 GEPLVAACAAAGT--DYADITGEIMFFE---NSIDLYHAQA--ADAGARIIPGCGFDSIPSDLGVYALLKQALPDGTEEL  158 (382)
T ss_pred             CCHHHHHHHHHCC--CEEECCCCHHHHH---HHHHHHHHHH--HHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH
T ss_conf             6479999997198--7241356179999---9988877788--7559789666777767640189999986476444422


Q ss_pred             -CC-CCEEEEEECCCCCCC
Q ss_conf             -56-502676512333356
Q gi|254780294|r  137 -DR-YPITINAVSGYTGGG  153 (311)
Q Consensus       137 -~~-~~~~~~~~sg~sgaG  153 (311)
                       +. ..+-.++-+|+|+.-
T Consensus       159 ~~t~l~l~s~t~~g~S~GT  177 (382)
T COG3268         159 IATHLALGSFTGSGISGGT  177 (382)
T ss_pred             HHHHEEEEECCCCCCCCCC
T ss_conf             3321001312567746520


No 128
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.53  E-value=0.063  Score=31.13  Aligned_cols=56  Identities=20%  Similarity=0.234  Sum_probs=37.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC------------------HHHHCCCCEEEECCC
Q ss_conf             079997588678999999986299728999965300786006------------------677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR------------------EDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~------------------~~~~~~~Divf~a~p   58 (311)
                      .+|||-||+|.-|++|.+.|..+ ...+..+++++.......                  +..++++|+.++.-|
T Consensus        18 KtIgITGAsGaLG~AL~k~f~~~-GakVIalTh~~~~~~~~~~~~p~~wi~W~cG~E~~L~~~LkkiDILILNHG   91 (250)
T PRK12367         18 KRIGITGASGALGKALTKLFRAK-GAKVIGLTHSKINNSEISDESPNEWVSWECGKESSLDKTLAKIDVLILNHG   91 (250)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCC
T ss_conf             87999678738999999999988-998999836888875455678952898434998999999875889998387


No 129
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.51  E-value=0.13  Score=29.13  Aligned_cols=86  Identities=14%  Similarity=0.081  Sum_probs=57.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-------------------------------CC---HHH
Q ss_conf             90799975886789999999862997289999653007860-------------------------------06---677
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-------------------------------YR---EDL   46 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-------------------------------~~---~~~   46 (311)
                      |.||||||| |..|+-+-.++..+ -++++++..+..+-.+                               +.   ++.
T Consensus         2 i~~VaViGa-G~mG~giA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~a   79 (308)
T PRK06129          2 MGSIAIVGA-GLIGRAWAIVFARA-GHRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADA   79 (308)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHH
T ss_conf             987999777-89999999999858-9938999898899999999999999999976999876599998350722888998


Q ss_pred             HCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf             479989999389837899--9999861-25848982276303555
Q gi|254780294|r   47 LNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA   88 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~   88 (311)
                      ++++|+|+=|.|....-+  ....+-+ ...++.+-+|+|.+...
T Consensus        80 l~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~is  124 (308)
T PRK06129         80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLAS  124 (308)
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf             474999999980779999999999996569855898455538899


No 130
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=95.48  E-value=0.12  Score=29.51  Aligned_cols=97  Identities=16%  Similarity=0.219  Sum_probs=58.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC-------CEEEEEEECCC--------------CCCCC------CC---------HHH
Q ss_conf             79997588678999999986299-------72899996530--------------07860------06---------677
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK-------DLCLLSIPCEE--------------RHNLR------YR---------EDL   46 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp-------~~~l~~l~s~~--------------~ag~~------~~---------~~~   46 (311)
                      ||+|+|| |.=|..|-.+|.+.-       .-++.+.+-++              +...+      +.         ++.
T Consensus         1 KI~ViGa-GawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~   79 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA   79 (342)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHH
T ss_conf             9899877-999999999999748865455786379997232210046899997449686779878489860896689999


Q ss_pred             HCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCH
Q ss_conf             479989999389837899999986125-848982276303555431100210004
Q gi|254780294|r   47 LNAADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDK  100 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~  100 (311)
                      .+++|++++|+|+..-+++...+...- .+..+|..+.-+...++-...+.|+-.
T Consensus        80 ~~~ad~ii~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle~~~~~~~~~seii~  134 (342)
T TIGR03376        80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIE  134 (342)
T ss_pred             HHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHH
T ss_conf             8369889996686999999999985458887389842344436998311999999


No 131
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.44  E-value=0.12  Score=29.32  Aligned_cols=86  Identities=15%  Similarity=0.210  Sum_probs=48.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CCC----CCHH-HHCCCCEEEECCC-----------------
Q ss_conf             0799975886789999999862997289999653007-860----0667-7479989999389-----------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-NLR----YRED-LLNAADVSILCLP-----------------   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-g~~----~~~~-~~~~~Divf~a~p-----------------   58 (311)
                      .||-|.||+|++|++|.+.|...-......+.+.+.. ..+    +.+. .-...|+++-|+.                 
T Consensus         1 MkILvtGa~GqLG~~l~~~l~~~~~~~~~~~~~~~~~~Dit~~~~v~~~~~~~~Pd~IIN~aA~T~VD~~E~~~~~a~~v   80 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLL   80 (299)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHCCHHHHHCCHHHHHHH
T ss_conf             97999899997899999986650988998526300136789999999999965999999883101636652489999998


Q ss_pred             -CHHHHHHHHHHHHCCCCEEEECCCCCHHHHH
Q ss_conf             -8378999999861258489822763035554
Q gi|254780294|r   59 -DVASLEIIQLIKKNGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        59 -~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~   89 (311)
                       ....+..+..+.+.|  ++.|--|++|=.|.
T Consensus        81 N~~~~~~La~~~~~~~--~~lIhiSTD~VFdG  110 (299)
T PRK09987         81 NATSVEAIAKAANEVG--AWVVHYSTDYVFPG  110 (299)
T ss_pred             HHHHHHHHHHHHHHCC--CEEEEECCCEEECC
T ss_conf             8899999999999739--85999632116068


No 132
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.41  E-value=0.038  Score=32.51  Aligned_cols=152  Identities=13%  Similarity=0.128  Sum_probs=78.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCCCC--------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             0799975886789999999862997---289999653007--------8600---6677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEERH--------NLRY---REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~~a--------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .||+++|+ |--|+.+++=|.+...   .++.....+...        |.++   ..+..+++|++|+|.....-.+..+
T Consensus         3 kkI~fIG~-GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~Dii~LaVKP~~~~~vl~   81 (272)
T PRK12491          3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN   81 (272)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEECHHHHHHHHH
T ss_conf             86999856-79999999999978898967699969799999999997197886687999731999999957789999999


Q ss_pred             HHHHCC-CCEEEECCCCCHHHH-------H--HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCC
Q ss_conf             986125-848982276303555-------4--31100210004776520496077258421133112478888850-345
Q gi|254780294|r   68 LIKKNG-INSRIIDTSTAHRIA-------P--GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK-LLP  136 (311)
Q Consensus        68 ~~~~~g-~~~~vid~ss~~R~~-------~--~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~-~i~  136 (311)
                      .+...- .+..||+-.+--..+       .  .+.-+.|=.+....+..  +.+-.+++|..-...... .|+... ...
T Consensus        82 ~l~~~~~~~~lviSi~AGi~i~~l~~~l~~~~~vvR~MPN~~a~v~~g~--t~i~~~~~~~~~~~~~v~-~lf~~~G~~~  158 (272)
T PRK12491         82 QIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGM--SALCFNEMVTEKDIKEVL-NIFNIFGQTE  158 (272)
T ss_pred             HHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHCCCC--EEEECCCCCCHHHHHHHH-HHHHCCCEEE
T ss_conf             9865526991899984899989999981899857997897699963696--578349989999999999-9972476499


Q ss_pred             CCCCEEEEEECCCCCCCCCCC
Q ss_conf             565026765123333561000
Q gi|254780294|r  137 DRYPITINAVSGYTGGGKKLI  157 (311)
Q Consensus       137 ~~~~~~~~~~sg~sgaG~~~~  157 (311)
                      ...--.+++.++.+|.|.+-.
T Consensus       159 ~~~E~~~d~~TalsGSgPAy~  179 (272)
T PRK12491        159 VVNEKLMDVVTSISGSSPAYV  179 (272)
T ss_pred             EECCCCHHHHHHHHCCHHHHH
T ss_conf             963531101457834759999


No 133
>PRK06349 homoserine dehydrogenase; Provisional
Probab=95.40  E-value=0.16  Score=28.70  Aligned_cols=80  Identities=15%  Similarity=0.233  Sum_probs=56.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECCCC-CCC-------CCC---HHHH--CCCCEEEECCCC
Q ss_conf             079997588678999999986299---------728999965300-786-------006---6774--799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCEER-HNL-------RYR---EDLL--NAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~~~-ag~-------~~~---~~~~--~~~Divf~a~p~   59 (311)
                      +||||+|- |.||+-+.++|.++.         .+++..++.++. +-+       .+.   ++.+  .++|+++=..+.
T Consensus         4 ikIgl~G~-GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k~r~~~~~~~~~t~d~~~i~~d~~idivVEliGG   82 (432)
T PRK06349          4 LKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLSGYLLTTDPEELVNDPDIDIVVELMGG   82 (432)
T ss_pred             EEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCCCEEEEECCC
T ss_conf             38999987-80699999999980999999869976999999689753558999855554799999438999899996699


Q ss_pred             -HHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             -3789999998612584898227630
Q gi|254780294|r   60 -VASLEIIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        60 -~~s~~~~~~~~~~g~~~~vid~ss~   84 (311)
                       +.+.+|+..+.++|..  |+....+
T Consensus        83 ~~~A~~~i~~AL~~Gkh--VVTANKa  106 (432)
T PRK06349         83 IEPARELILAALEAGKH--VVTANKA  106 (432)
T ss_pred             CHHHHHHHHHHHHCCCC--EEECCHH
T ss_conf             50799999999985996--8925879


No 134
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.24  E-value=0.18  Score=28.29  Aligned_cols=86  Identities=13%  Similarity=0.112  Sum_probs=57.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC------------------------------CHHHHCCC
Q ss_conf             907999758867899999998629972899996530078600------------------------------66774799
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY------------------------------REDLLNAA   50 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~------------------------------~~~~~~~~   50 (311)
                      |.||||||| |..|.-.-.++..+ -++++++.-+..+.+++                              -++..+++
T Consensus         2 IkkVAVIGA-GvMGsGwAa~FA~a-G~~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dA   79 (489)
T PRK07531          2 IMKAACIGG-GVIGGGWAARFLLN-GWDVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGA   79 (489)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCC
T ss_conf             767999871-88689999999957-9969999488789999999999999987753203556467768638899997479


Q ss_pred             CEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf             89999389837899--9999861-25848982276303555
Q gi|254780294|r   51 DVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA   88 (311)
Q Consensus        51 Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~   88 (311)
                      |+|.=|.|....-+  ....+.+ ...++.+-+|+|.+...
T Consensus        80 DlVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~S  120 (489)
T PRK07531         80 DWIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKPS  120 (489)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf             99998785669999999999997679983898536658899


No 135
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=95.18  E-value=0.2  Score=28.04  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC------------------------C
Q ss_conf             0799975886789999999862997289999---------------653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~------------------------~   42 (311)
                      .||.|+|+ |-+|.++.+.|..--.-+++.+               ..++..|+.                        +
T Consensus         2 skVlivG~-GglG~~~~~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i   80 (134)
T pfam00899         2 SRVLVVGA-GGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERL   80 (134)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             88999898-88999999999993897499998956763222722423364668810799999999778995899992567


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCC
Q ss_conf             6----677479989999389837899999986-125848982276
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTS   82 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~s   82 (311)
                      .    +++++++|++|.|+++-.++.+...+. +.+  +.+|+.+
T Consensus        81 ~~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~--ip~i~~~  123 (134)
T pfam00899        81 TPENLEELLKGADLVVDALDNFAARYLLNDACVKRG--IPLISAG  123 (134)
T ss_pred             CHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEE
T ss_conf             977876426448899999899999999999999859--9899955


No 136
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=95.17  E-value=0.081  Score=30.48  Aligned_cols=34  Identities=12%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             EECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC
Q ss_conf             97588678999999986299-72899996530078
Q gi|254780294|r    6 IDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN   39 (311)
Q Consensus         6 IvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag   39 (311)
                      |+|+||=+|+.-++++.+|| .|++..++..++..
T Consensus         1 ILGSTGSIG~~tL~Vi~~~~~~f~V~~Lsa~~n~~   35 (392)
T PRK12464          1 ILGSTGSIGTSTLDVVAAHPERFKVVALTANYNIE   35 (392)
T ss_pred             CCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHH
T ss_conf             95957598999999999486870899999388799


No 137
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=95.16  E-value=0.038  Score=32.49  Aligned_cols=37  Identities=19%  Similarity=0.310  Sum_probs=33.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC
Q ss_conf             9079997588678999999986299-728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~   37 (311)
                      |.|+.|+|+||=.|..-++++.+|| .|++..++.-+.
T Consensus         1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n   38 (385)
T COG0743           1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKN   38 (385)
T ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf             94599971687342889999996898579999734874


No 138
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.15  E-value=0.1  Score=29.84  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC--------CCC-----CCHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             907999758867899999998629-97289999653007--------860-----0667747998999938983789999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH--------NLR-----YREDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a--------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      |.||.|+|. |-.|.-..+.|.++ ..+.+....++...        +..     ...+.+.++|+++.+-+=.......
T Consensus         7 ~KkvlV~Gl-G~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~~~~p~~   85 (438)
T PRK04663          7 IKNVVVVGL-GITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIALATPEI   85 (438)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCCCCCHHH
T ss_conf             974999906-7858999999996699846999639889368876206976972788967836899999899769989899


Q ss_pred             HHHHHCCCC
Q ss_conf             998612584
Q gi|254780294|r   67 QLIKKNGIN   75 (311)
Q Consensus        67 ~~~~~~g~~   75 (311)
                      ..+.++|..
T Consensus        86 ~~a~~~~i~   94 (438)
T PRK04663         86 QPVLAKGIP   94 (438)
T ss_pred             HHHHHCCCC
T ss_conf             999986993


No 139
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.11  E-value=0.069  Score=30.93  Aligned_cols=56  Identities=14%  Similarity=0.118  Sum_probs=39.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------------HHHHCCCCEEEECCC
Q ss_conf             079997588678999999986299728999965300786006----------------677479989999389
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------------EDLLNAADVSILCLP   58 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------------~~~~~~~Divf~a~p   58 (311)
                      .+|.|.||||++|+.+++.|.++ ..+++.+..+..+-....                ...+.++|.++++.+
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~~~~G~~~~~~i~~   72 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAKGVDGVLLISG   72 (275)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEEEEECC
T ss_conf             93899867775799999999975-9869997368221111037852884564160779998489417999525


No 140
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=95.05  E-value=0.034  Score=32.78  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=51.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCC-------------CCCCCCC--HHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             7999758867899999998629-972899996530-------------0786006--67747998999938983789999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEE-------------RHNLRYR--EDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~-------------~ag~~~~--~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      -|||+||||-+|-.+-|.|..| -..++.+=.++.             .+|+..+  .+... .|+.|+.+....--++.
T Consensus       169 tvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~-e~i~v~vAs~~~g~~I~  247 (351)
T COG5322         169 TVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQ-EDILVWVASMPKGVEIF  247 (351)
T ss_pred             EEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCC-CCEEEEEEECCCCCEEC
T ss_conf             57872478548999998763466779986351876414665532015688716415410446-13399996169985215


Q ss_pred             HHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             9986125848982276303555431
Q gi|254780294|r   67 QLIKKNGINSRIIDTSTAHRIAPGW   91 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss~~R~~~~v   91 (311)
                      |...+.|  |+++|-...-..|+.+
T Consensus       248 pq~lkpg--~~ivD~g~P~dvd~~v  270 (351)
T COG5322         248 PQHLKPG--CLIVDGGYPKDVDTSV  270 (351)
T ss_pred             HHHCCCC--EEEECCCCCCCCCCCC
T ss_conf             5333697--0897487576666300


No 141
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.00  E-value=0.22  Score=27.79  Aligned_cols=78  Identities=18%  Similarity=0.235  Sum_probs=48.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC---------------CCCCCC------------------------C-
Q ss_conf             799975886789999999862997289999653---------------007860------------------------0-
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE---------------ERHNLR------------------------Y-   42 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~---------------~~ag~~------------------------~-   42 (311)
                      ||.|+|+ |-+|.++.+.|..-..-+++.+...               +..|+.                        + 
T Consensus         1 kVlivG~-GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             9999997-989999999999937971999978987500146422589889492248999999985689838999945689


Q ss_pred             ---CHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCEEEECCCC
Q ss_conf             ---66774799899993898378999999861-258489822763
Q gi|254780294|r   43 ---REDLLNAADVSILCLPDVASLEIIQLIKK-NGINSRIIDTST   83 (311)
Q Consensus        43 ---~~~~~~~~Divf~a~p~~~s~~~~~~~~~-~g~~~~vid~ss   83 (311)
                         .++.++++|+++-|+++-.++.+...+.. .+  ..+|+-+.
T Consensus        80 ~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~--ip~i~~~~  122 (143)
T cd01483          80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGG  122 (143)
T ss_pred             HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEC
T ss_conf             64699997599999987799999999999999869--98899636


No 142
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.98  E-value=0.2  Score=28.01  Aligned_cols=86  Identities=14%  Similarity=0.125  Sum_probs=57.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC------------------------------CHHHHCCC
Q ss_conf             907999758867899999998629972899996530078600------------------------------66774799
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY------------------------------REDLLNAA   50 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~------------------------------~~~~~~~~   50 (311)
                      +.||||||| |..|.-...++..+ -++++.+..+..+-.+.                              -++.++++
T Consensus         7 Ik~VaVIGa-G~MG~giAa~~a~~-G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~a   84 (321)
T PRK07066          7 IKTFAAIGS-GVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA   84 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCC
T ss_conf             887999888-78889999999947-9859999698889999999999999999866899631696501468889986359


Q ss_pred             CEEEECCCCHHHHHH--HHHH-HHCCCCEEEECCCCCHHHH
Q ss_conf             899993898378999--9998-6125848982276303555
Q gi|254780294|r   51 DVSILCLPDVASLEI--IQLI-KKNGINSRIIDTSTAHRIA   88 (311)
Q Consensus        51 Divf~a~p~~~s~~~--~~~~-~~~g~~~~vid~ss~~R~~   88 (311)
                      |+|+=|.|....-+-  ..++ .-...++.+-+|+|.+-..
T Consensus        85 D~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~is  125 (321)
T PRK07066         85 DFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT  125 (321)
T ss_pred             CEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf             98998776659999999999997679886785257657899


No 143
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099   This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=94.94  E-value=0.029  Score=33.27  Aligned_cols=132  Identities=15%  Similarity=0.131  Sum_probs=71.1

Q ss_pred             EEEECC-CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH---H---CCCCEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf             999758-8678999999986299728999965300786006677---4---79989999389837899999986125848
Q gi|254780294|r    4 IFIDGE-HGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL---L---NAADVSILCLPDVASLEIIQLIKKNGINS   76 (311)
Q Consensus         4 VaIvGA-TG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~---~---~~~Divf~a~p~~~s~~~~~~~~~~g~~~   76 (311)
                      |.|=|| ||++|+.|.+.|.+. .-+++.|+-+....+....+.   .   ...|+...     .+. | ..+  .+++ 
T Consensus         1 ~litGgnTGfiG~~L~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~-W-~~l--~~~D-   69 (307)
T TIGR01777         1 ILITGGNTGFIGRALTQRLTKS-GHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIA-----ESG-W-SAL--EGAD-   69 (307)
T ss_pred             CEECCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCC-----HHC-C-CCC--CCCC-
T ss_conf             9641533023789999999847-998999961686432000255445555221245207-----220-5-667--8862-


Q ss_pred             EEECCCCCHHHH-HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             982276303555-4311002100047765204960772584211331124788888503455650267651233335610
Q gi|254780294|r   77 RIIDTSTAHRIA-PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKK  155 (311)
Q Consensus        77 ~vid~ss~~R~~-~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~  155 (311)
                      .||.+++.-=++ ..       +|+.+.+.+..+||-      +|.   .|.-+.+...-.+..+.+.-+.|++|.-|.+
T Consensus        70 aviNLAG~~i~~P~R-------Wt~~~K~~i~~SRi~------~T~---~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~  133 (307)
T TIGR01777        70 AVINLAGEPIADPKR-------WTEERKQEIRDSRID------TTR---ALVEAIAAAPRAEQKPKVFISASAVGYYGHS  133 (307)
T ss_pred             EEEECCCCCCCCCCC-------CCHHHHHHHHHCCHH------HHH---HHHHHHHHCCCCCCCCCEEEEEEEEEEECCC
T ss_conf             798556888577888-------787775756523347------899---9999998465667887168850166630689


Q ss_pred             CCHHCCC
Q ss_conf             0000013
Q gi|254780294|r  156 LISRMEQ  162 (311)
Q Consensus       156 ~~~~~~~  162 (311)
                      ....+..
T Consensus       134 ~~~~~tE  140 (307)
T TIGR01777       134 EDRVFTE  140 (307)
T ss_pred             CCCEEEC
T ss_conf             9821511


No 144
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=94.82  E-value=0.25  Score=27.43  Aligned_cols=53  Identities=17%  Similarity=0.313  Sum_probs=32.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCHHHHC--CCCEEEECC
Q ss_conf             9997588678999999986299728999965300--78600667747--998999938
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYREDLLN--AADVSILCL   57 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~~~~~~--~~Divf~a~   57 (311)
                      |-|.|+||++|+.|.+.|.+. ..+++.+..++-  .....-+..+.  +.|++|-++
T Consensus         1 ILVtG~~GfiGs~l~~~L~~~-g~~v~~~~r~~~D~~d~~~l~~~~~~~~pd~VihlA   57 (284)
T pfam04321         1 ILVTGANGQLGRELTRLLAER-GVEVVALDRPELDLTDPEAVAALVREARPDVVVNAA   57 (284)
T ss_pred             EEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC
T ss_conf             699648998999999999868-998999548625788999999999864997999724


No 145
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of  a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=94.82  E-value=0.3  Score=26.96  Aligned_cols=92  Identities=15%  Similarity=0.139  Sum_probs=56.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C
Q ss_conf             079997588678999999986299728999---------------9653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~   42 (311)
                      .||.|+|+ |-+|......|..--.-+|..               +.+++..|+.                        +
T Consensus        22 s~VlivG~-GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i  100 (228)
T cd00757          22 ARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL  100 (228)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC
T ss_conf             97899887-78899999999983997589997874556764221023786687895999999998548875303132100


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCC
Q ss_conf             6----677479989999389837899999986-125848982276303555431100210
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTSTAHRIAPGWVYGFPE   97 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~ss~~R~~~~vpl~vPE   97 (311)
                      +    ++.++++|+|+-|+++-.++.+...+. +.+.  .+|. ++..++.-.+-...|.
T Consensus       101 ~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~i--P~i~-g~~~g~~Gqv~~~~p~  157 (228)
T cd00757         101 DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGK--PLVS-GAVLGFEGQVTVFIPG  157 (228)
T ss_pred             CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCC--CEEE-EEECCCEEEEEEECCC
T ss_conf             5756998873798999877998899999999998399--8899-9740028689886799


No 146
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.79  E-value=0.16  Score=28.64  Aligned_cols=118  Identities=14%  Similarity=0.200  Sum_probs=67.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------------------CC-------------CCC---HHH
Q ss_conf             90799975886789999999862997289999653007------------------86-------------006---677
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------------------NL-------------RYR---EDL   46 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------------------g~-------------~~~---~~~   46 (311)
                      |.||+|+|| |.-|..+-.++..+ -+++.++..+..+                  |+             ++.   ++.
T Consensus         2 IkkV~ViGa-G~MG~~IA~~~a~~-G~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a   79 (289)
T PRK09260          2 MEKIVVVGA-GVMGRGIAYVFASS-GFQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEA   79 (289)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             676999796-88789999999968-9988999799899999999999999999871799989999999558766888998


Q ss_pred             HCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH--------HHHHCCCCCCHHHHHHCCCCEEEECC
Q ss_conf             479989999389837899--9999861-258489822763035554--------31100210004776520496077258
Q gi|254780294|r   47 LNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP--------GWVYGFPEMDKSQKEKIRSARYITNP  115 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~--------~vpl~vPEvN~~~~~~~~~~~iIanP  115 (311)
                      ++++|+|+=|.|.....+  +..++.+ ...++.+-+|+|.+..+.        +--+++==.||-++-.+-.  +|..|
T Consensus        80 ~~~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~is~ia~~~~~p~R~ig~HffnP~~~~~lVE--vv~g~  157 (289)
T PRK09260         80 VAGADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLSPTEIASATKRPERVIGMHFFNPVHKMKLVE--LVRGL  157 (289)
T ss_pred             HCCCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCHHHEEEECCCCCHHHHEEEE--ECCCC
T ss_conf             4769999988868632368999998606899808985588877114554159846626412477432212356--45899


Q ss_pred             CCCCCCC
Q ss_conf             4211331
Q gi|254780294|r  116 GCYATGA  122 (311)
Q Consensus       116 nC~~t~~  122 (311)
                      ..+.-.+
T Consensus       158 ~Ts~e~i  164 (289)
T PRK09260        158 ETSDETV  164 (289)
T ss_pred             CCCHHHH
T ss_conf             9999999


No 147
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=94.77  E-value=0.17  Score=28.41  Aligned_cols=66  Identities=17%  Similarity=0.141  Sum_probs=49.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC--------------------------
Q ss_conf             799975886789999999862997289999---------------653007860--------------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR--------------------------   41 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~--------------------------   41 (311)
                      ||-|||| |-.|.|+++-|...-..+|+.+               ...+..|+.                          
T Consensus         1 kvlvvG~-GglG~e~~k~la~~Gvg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~   79 (291)
T cd01488           1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ   79 (291)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             9899928-888999999999848985999739934413565674676553687899999999998789978998505310


Q ss_pred             -CCHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             -0667747998999938983789999998
Q gi|254780294|r   42 -YREDLLNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus        42 -~~~~~~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                       +.++++++.|+|+.|+++-.++.|+...
T Consensus        80 ~~~~~f~~~fdvVi~~lDn~~aR~~vN~~  108 (291)
T cd01488          80 DKDEEFYRQFNIIICGLDSIEARRWINGT  108 (291)
T ss_pred             HCCHHHHHHCCEEEECCCCHHHHHHHHHH
T ss_conf             07898995199999887899999999999


No 148
>PRK09117 consensus
Probab=94.76  E-value=0.29  Score=27.02  Aligned_cols=118  Identities=16%  Similarity=0.175  Sum_probs=67.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHH
Q ss_conf             90799975886789999999862997289999653007---86--------------00----------------66774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~   47 (311)
                      |.||||+|| |.-|+.+-.++..+ -++++++.-+..+   +.              ++                +.+.+
T Consensus         2 I~~VaViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~   79 (282)
T PRK09117          2 IQTVGIIGA-GTMGNGIAQACAVA-GLDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYDAL   79 (282)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH
T ss_conf             177999897-79999999999967-9968999898899999999999999999970688778899998406567998997


Q ss_pred             CCCCEEEECCCCHHHHHH--HHHHHH-CCCCEEEECCCCCHHHHHH--------HHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             799899993898378999--999861-2584898227630355543--------11002100047765204960772584
Q gi|254780294|r   48 NAADVSILCLPDVASLEI--IQLIKK-NGINSRIIDTSTAHRIAPG--------WVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~~--~~~~~~-~g~~~~vid~ss~~R~~~~--------vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                      +++|+|+=|.|....-+-  -.++.+ ...++.+-+|+|.+....=        --++.==.||-++-.+-.  +|..|.
T Consensus        80 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~ia~~~~~p~R~ig~HffnP~~~~~LVE--iv~g~~  157 (282)
T PRK09117         80 KDADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSISITKLAAATSRPDRFIGMHFFNPVPMMALVE--LIRGLQ  157 (282)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCEEE--ECCCCC
T ss_conf             559999987858888889999999865799818986587676177887649846415545568866584488--649999


Q ss_pred             CCCCCC
Q ss_conf             211331
Q gi|254780294|r  117 CYATGA  122 (311)
Q Consensus       117 C~~t~~  122 (311)
                      .+.-..
T Consensus       158 Ts~~~~  163 (282)
T PRK09117        158 TSDATH  163 (282)
T ss_pred             CCHHHH
T ss_conf             989999


No 149
>pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain.
Probab=94.71  E-value=0.1  Score=29.89  Aligned_cols=79  Identities=20%  Similarity=0.310  Sum_probs=53.5

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-----CCC------CHHHHCCCCEEEECCCCHHHHHHHHHHHH--
Q ss_conf             99758867899999998629972899996530078-----600------66774799899993898378999999861--
Q gi|254780294|r    5 FIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN-----LRY------REDLLNAADVSILCLPDVASLEIIQLIKK--   71 (311)
Q Consensus         5 aIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag-----~~~------~~~~~~~~Divf~a~p~~~s~~~~~~~~~--   71 (311)
                      +|+|| |-||.-|=..|.+- -..+..+++.+.+.     ..+      ..+...++|++|++.|++.-.+.+..+..  
T Consensus         1 GiIGa-GrvG~~L~~al~~a-Gh~v~gv~srs~~s~~~a~~~~~~~~~~~~ev~~~adlv~itvPDd~I~~vv~~la~~~   78 (111)
T pfam10727         1 GIISA-GRVGVALGEALERA-GHVVHAISAISDASRERAERRLDSPVLPIPDVIRRAELVVLAVPDAELPGLVEGLAATV   78 (111)
T ss_pred             CCCCC-CHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHC
T ss_conf             94376-57799999999978-98289998389889999998669976795898976799999897888999999998326


Q ss_pred             -CCCCEEEECCCCCHHH
Q ss_conf             -2584898227630355
Q gi|254780294|r   72 -NGINSRIIDTSTAHRI   87 (311)
Q Consensus        72 -~g~~~~vid~ss~~R~   87 (311)
                       .|  ..|+--|.++-.
T Consensus        79 ~~G--qiV~HtSGa~g~   93 (111)
T pfam10727        79 RRG--QIVAHTSGAHGI   93 (111)
T ss_pred             CCC--CEEEECCCCCHH
T ss_conf             799--799986687507


No 150
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.71  E-value=0.25  Score=27.46  Aligned_cols=82  Identities=22%  Similarity=0.268  Sum_probs=51.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CCCCC-------C---------HHHHCCCCEEEEC
Q ss_conf             9079997588678999999986299728999965300--------78600-------6---------6774799899993
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HNLRY-------R---------EDLLNAADVSILC   56 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag~~~-------~---------~~~~~~~Divf~a   56 (311)
                      +-||+|+|| |.=|..|-.+|.+.- -.+.+.-.++.        ...+|       .         ++..+++|++++|
T Consensus         6 ~~KI~ViGa-GawGTALA~~la~n~-~~v~w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~adiii~a   83 (340)
T PRK12439          6 EPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCADVVVMG   83 (340)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEE
T ss_conf             992899896-999999999999589-989996899999999982888768998755898728978999998269989993


Q ss_pred             CCCHHHHHHHHHHHHCC-CCEEEECCCCC
Q ss_conf             89837899999986125-84898227630
Q gi|254780294|r   57 LPDVASLEIIQLIKKNG-INSRIIDTSTA   84 (311)
Q Consensus        57 ~p~~~s~~~~~~~~~~g-~~~~vid~ss~   84 (311)
                      +|...-+++...+.+.- ....++..+.-
T Consensus        84 vPS~~~r~~~~~l~~~l~~~~~iv~~sKG  112 (340)
T PRK12439         84 VPSHGFRGVLTELAKELRPWVPVVSLVKG  112 (340)
T ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             68089999999998655788759973275


No 151
>KOG1430 consensus
Probab=94.68  E-value=0.059  Score=31.32  Aligned_cols=37  Identities=11%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC
Q ss_conf             907999758867899999998629-9728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~   37 (311)
                      |..+.|+|++|+.|+.|++.|.++ +..+++.+.....
T Consensus         4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~   41 (361)
T KOG1430           4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPT   41 (361)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             77799989833789999999984566617999536775


No 152
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=94.66  E-value=0.33  Score=26.72  Aligned_cols=35  Identities=14%  Similarity=0.249  Sum_probs=28.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             799975886789999999862997289999653007
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH   38 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a   38 (311)
                      +|-|.|+||++|..|.+.|.+. ..+++.+......
T Consensus         2 ~iLVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~   36 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG   36 (314)
T ss_pred             EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCC
T ss_conf             6999928877799999999858-9979999178754


No 153
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61  E-value=0.11  Score=29.67  Aligned_cols=73  Identities=11%  Similarity=0.120  Sum_probs=51.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CC---CCCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             90799975886789999999862997289999653007-------86---006677479989999389837899999986
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NL---RYREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~---~~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      |+||.|+|. |-.|+-..+.|.++- .++.....+...       +.   ...+..+.++|+++.+-+=.....+...+.
T Consensus         3 ~KkvlV~Gl-G~SG~s~a~~L~~~g-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi~~~~p~~~~a~   80 (418)
T PRK00683          3 LQRVVVLGL-GVTGKSVARFLAQKG-VYVIGVDNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGIKPYHPWVEAAV   80 (418)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHCC-CEEEEECCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHH
T ss_conf             866999808-887999999999782-989998298145454614555405623324234989998998599889999999


Q ss_pred             HCCCC
Q ss_conf             12584
Q gi|254780294|r   71 KNGIN   75 (311)
Q Consensus        71 ~~g~~   75 (311)
                      +.|..
T Consensus        81 ~~~i~   85 (418)
T PRK00683         81 ALKIP   85 (418)
T ss_pred             HCCCC
T ss_conf             86997


No 154
>KOG1203 consensus
Probab=94.60  E-value=0.052  Score=31.67  Aligned_cols=37  Identities=16%  Similarity=0.367  Sum_probs=29.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             90799975886789999999862997289999653007
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH   38 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a   38 (311)
                      |.+|.++||||.|||.+++.|-++- |..+.+.-+..+
T Consensus        79 ~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~  115 (411)
T KOG1203          79 PTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQK  115 (411)
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHCC-CEEEEECCCHHH
T ss_conf             8749995588736399999999779-702342157365


No 155
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56  E-value=0.29  Score=27.03  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=57.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHH
Q ss_conf             90799975886789999999862997289999653007---86--------------00----------------66774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~   47 (311)
                      +.||||||| |.-|+.+-.+++.+ -++++++..+..+   ++              .+                +-+.+
T Consensus         4 ik~VaViGA-G~MG~giA~~~a~~-G~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~~~~~   81 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALA-GYDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATTLDDL   81 (292)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             888999896-69999999999967-9968999798899999999999999999970688889999998407776898896


Q ss_pred             CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             79989999389837899--9999861-258489822763035554
Q gi|254780294|r   48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      +++|+|+=|.|....-+  ...++.+ ...++.+-+|+|.+....
T Consensus        82 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~  126 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISITR  126 (292)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH
T ss_conf             649999988847458789899999862698848987588875056


No 156
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.56  E-value=0.35  Score=26.57  Aligned_cols=87  Identities=13%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------------------CC--------------CCC---HH
Q ss_conf             90799975886789999999862997289999653007------------------86--------------006---67
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------------------NL--------------RYR---ED   45 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------------------g~--------------~~~---~~   45 (311)
                      |.||||||| |.-|+.+-.++..+ -++++++..+..+                  ++              ++.   ++
T Consensus         3 i~~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~   80 (288)
T PRK08293          3 IKKVTVAGA-GVLGSQIAFQTAFK-GFDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQ   80 (288)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHH
T ss_conf             578999897-88999999999957-9928999898899999999999999999970599917899999807730589899


Q ss_pred             HHCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             7479989999389837899--9999861-258489822763035554
Q gi|254780294|r   46 LLNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        46 ~~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      .++++|+|+=|.|....-+  ...++.+ ...++.+-+|+|.+..+.
T Consensus        81 a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~it~  127 (288)
T PRK08293         81 AVKDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLPSQ  127 (288)
T ss_pred             HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf             84669999997808799999999999974677669986687676579


No 157
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and  m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=94.54  E-value=0.13  Score=29.12  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=53.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      ++|.|||.+..||+-|-.+|.++ ...++...|+.. +   -++...+.|+++.|.|..  .-+-+...+.|  ..|||-
T Consensus        29 k~vvVvGrS~~VG~Pla~lL~~~-~atVt~~hs~t~-~---l~~~~~~ADIvI~a~G~p--~~i~~~~vk~G--avvIDv   99 (140)
T cd05212          29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKTI-Q---LQSKVHDADVVVVGSPKP--EKVPTEWIKPG--ATVINC   99 (140)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCC-C---HHHHHHHCCEEEECCCCC--CCCCHHHCCCC--CEEEEE
T ss_conf             99999999812499999999978-898999469995-9---899852349999816876--72789776799--889980


Q ss_pred             CCCH
Q ss_conf             6303
Q gi|254780294|r   82 STAH   85 (311)
Q Consensus        82 ss~~   85 (311)
                      +...
T Consensus       100 Gi~~  103 (140)
T cd05212         100 SPTK  103 (140)
T ss_pred             CCCC
T ss_conf             3775


No 158
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=94.52  E-value=0.28  Score=27.19  Aligned_cols=80  Identities=13%  Similarity=0.163  Sum_probs=48.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECC-CCCCC--CCC--------------HH--HHCCCCE
Q ss_conf             9079997588678999999986299---------7289999653-00786--006--------------67--7479989
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCE-ERHNL--RYR--------------ED--LLNAADV   52 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~-~~ag~--~~~--------------~~--~~~~~Di   52 (311)
                      +.||+|+|- |.||+.++++|.++.         .+++..++.+ .+.-.  ...              .+  .-.++|+
T Consensus         3 ~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv   81 (333)
T COG0460           3 TVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV   81 (333)
T ss_pred             EEEEEEECC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCHHHHCCCCCCE
T ss_conf             489999833-7142999999998268887632872699999961530113566533234300553244276650456887


Q ss_pred             EEECCCC--HHHH--HHHHHHHHCCCCEEEECCC
Q ss_conf             9993898--3789--9999986125848982276
Q gi|254780294|r   53 SILCLPD--VASL--EIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        53 vf~a~p~--~~s~--~~~~~~~~~g~~~~vid~s   82 (311)
                      ++=+.|.  +.++  ++..++.+.|.. +|=-|=
T Consensus        82 vve~~~~d~~~~~~~~~~~~al~~Gkh-VVTaNK  114 (333)
T COG0460          82 VVELVGGDVEPAEPADLYLKALENGKH-VVTANK  114 (333)
T ss_pred             EEECCCCCCCCHHHHHHHHHHHHCCCE-EECCCC
T ss_conf             985576668741238999999975996-997896


No 159
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.51  E-value=0.088  Score=30.24  Aligned_cols=58  Identities=24%  Similarity=0.399  Sum_probs=41.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC-------------------C--C---HHHHCCCC
Q ss_conf             079997588678999999986299728999965300------7860-------------------0--6---67747998
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR-------------------Y--R---EDLLNAAD   51 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~-------------------~--~---~~~~~~~D   51 (311)
                      .||+|+|. ||||.-+--.|+++ .+++..+...+.      .|+.                   +  .   .+...++|
T Consensus         1 MkI~ViGl-GyVGl~~a~~lA~~-G~~V~g~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~d   78 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADL-GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCC
T ss_conf             97999897-87799999999948-99489998999999999779899789898999999986399799878899872099


Q ss_pred             EEEECCCCHH
Q ss_conf             9999389837
Q gi|254780294|r   52 VSILCLPDVA   61 (311)
Q Consensus        52 ivf~a~p~~~   61 (311)
                      ++|.|+|...
T Consensus        79 ii~I~V~TP~   88 (411)
T TIGR03026        79 VIIICVPTPL   88 (411)
T ss_pred             EEEEECCCCC
T ss_conf             9999768986


No 160
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=94.49  E-value=0.36  Score=26.48  Aligned_cols=97  Identities=15%  Similarity=0.050  Sum_probs=70.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC---CCC-CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf             07999758867899999998629-9728999965300---786-006677479989999389837899999986125848
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER---HNL-RYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS   76 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~---ag~-~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~   76 (311)
                      .||.++|+|--+...+.+.|..+ |..++....+---   ... -++...-.+.|++|.+++...-..|+....+.....
T Consensus        47 ~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~f~~~~~~~i~~~I~~~~~div~vglG~PkQE~~~~~~~~~l~~~  126 (171)
T cd06533          47 LRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVP  126 (171)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             74999808989999999999978899379998789998066899999998649999999679828899999999877998


Q ss_pred             EEECCCCCHHHHHHHHHCCCCC
Q ss_conf             9822763035554311002100
Q gi|254780294|r   77 RIIDTSTAHRIAPGWVYGFPEM   98 (311)
Q Consensus        77 ~vid~ss~~R~~~~vpl~vPEv   98 (311)
                      .++-..++|....+..-..|.+
T Consensus       127 ~~~~vGgafd~~aG~~~raP~w  148 (171)
T cd06533         127 VAIGVGGSFDFLAGTVKRAPKW  148 (171)
T ss_pred             EEEECCEEEEHHCCCCCCCCHH
T ss_conf             6986451211030784536499


No 161
>pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family.
Probab=94.44  E-value=0.26  Score=27.36  Aligned_cols=97  Identities=13%  Similarity=0.042  Sum_probs=71.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC-CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf             07999758867899999998629-9728999965300---7860-06677479989999389837899999986125848
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER---HNLR-YREDLLNAADVSILCLPDVASLEIIQLIKKNGINS   76 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~---ag~~-~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~   76 (311)
                      .||.++|+|--+-..+.+.|.++ |..++....+--.   .-.. ++...-.+.|++|.+++...-..|+....+.....
T Consensus        49 ~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div~vglG~PkQE~~~~~~~~~~~~~  128 (172)
T pfam03808        49 KRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLLFVGLGAPKQEKWIARNRARLPVP  128 (172)
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf             83899808889999999999988799559998799998689999999998459999999569817799999999877998


Q ss_pred             EEECCCCCHHHHHHHHHCCCCC
Q ss_conf             9822763035554311002100
Q gi|254780294|r   77 RIIDTSTAHRIAPGWVYGFPEM   98 (311)
Q Consensus        77 ~vid~ss~~R~~~~vpl~vPEv   98 (311)
                      +++--.++|....+..-..|.+
T Consensus       129 v~~~vGa~~d~~aG~~~raP~w  150 (172)
T pfam03808       129 VFIGVGGSFDFLAGTVKRAPKW  150 (172)
T ss_pred             EEEECCCHHHHHHCCCCCCCHH
T ss_conf             7985240124663785647799


No 162
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676   Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see .   Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor.   This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process.
Probab=94.44  E-value=0.052  Score=31.65  Aligned_cols=94  Identities=5%  Similarity=-0.136  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCCCCCCCCC-CCCCCC-CHHHHCCCCEEEE-EEEEC---CCC-CCEEEEEEEEEEECCCCCCCHH-----
Q ss_conf             3444322343322222344-444342-0133216711368-87520---343-3202789999863257754489-----
Q gi|254780294|r  162 QKNMPDTISSNHFFYSLDL-LHKHLP-EITQYSLIKTSPM-FLPSV---GRF-PQGIAIQISLDMERLSWKTNSE-----  229 (311)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~-~~~h~~-e~~~~~~~~~~~~-~~~~~---~~~-~~g~~~~v~v~~~~~~~~~~~~-----  229 (311)
                      .|....-.++.+..+.+.- ...|+. |.+|+..+..++. -.-.-   .|- +..-.+|.+|++..+|..+...     
T Consensus       180 mQAvSGAGY~GVp~~~I~dN~iP~I~GEE~KIe~E~~KilsGkl~~g~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~  259 (358)
T TIGR00978       180 MQAVSGAGYPGVPSMDILDNVIPHIGGEEEKIERETLKILSGKLENGKIEPAEFEVSATTTRVPVLDGHTESVHVEFDKK  259 (358)
T ss_pred             ECCHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEEECCC
T ss_conf             20001488888754555336165506335898762133334400388464204406899874441116469999986687


Q ss_pred             -HHHHHHHHHHCCCCCCEEECCCCCCC
Q ss_conf             -98866542200144305602787887
Q gi|254780294|r  230 -ELHSIFQEYYMGQNIVSVVPLEESRK  255 (311)
Q Consensus       230 -~~~~~~~~~~~~~~~v~v~~~~~~~~  255 (311)
                       ++.+..+.+..-....+-+.++..|+
T Consensus       260 ~d~~EI~~~~~~f~~~Pq~l~lP~~P~  286 (358)
T TIGR00978       260 FDIEEIREALKSFRGLPQKLGLPSAPE  286 (358)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             798999999984067764257798869


No 163
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=94.40  E-value=0.21  Score=27.95  Aligned_cols=89  Identities=16%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC----CCC---------HHHHCCCCEEEECCCC--H-HHHHH
Q ss_conf             079997588678999999986299728999965300786----006---------6774799899993898--3-78999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL----RYR---------EDLLNAADVSILCLPD--V-ASLEI   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~----~~~---------~~~~~~~Divf~a~p~--~-~s~~~   65 (311)
                      .||-|||| |-.|+-..+-|.++...+++..--.-...+    ++.         ...+.++|++|+|++.  . +....
T Consensus       179 ~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~  257 (414)
T COG0373         179 KKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREM  257 (414)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCHHH
T ss_conf             76999865-18999999999858987799975878999999998387022187788765207999990699855407888


Q ss_pred             HHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             99986125848982276303555431
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHRIAPGW   91 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R~~~~v   91 (311)
                      .+...+.-....+||.+-.--.++++
T Consensus       258 ve~a~~~r~~~livDiavPRdie~~v  283 (414)
T COG0373         258 VERALKIRKRLLIVDIAVPRDVEPEV  283 (414)
T ss_pred             HHHHHHCCCCEEEEEECCCCCCCCCC
T ss_conf             99887411675999826999987220


No 164
>PRK07660 consensus
Probab=94.38  E-value=0.33  Score=26.71  Aligned_cols=87  Identities=15%  Similarity=0.174  Sum_probs=57.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CC----------------CC----------------CHHHH
Q ss_conf             90799975886789999999862997289999653007-86----------------00----------------66774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-NL----------------RY----------------REDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-g~----------------~~----------------~~~~~   47 (311)
                      +.||+|||| |.-|..+-.++..+ ..++.++..+..+ .+                ++                +-+.+
T Consensus         3 Ik~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~   80 (283)
T PRK07660          3 VQKIVVIGA-GQMGSGIAQVCAMA-GYDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDCV   80 (283)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             788999896-98999999999966-9818999798899999999999999999870589989999998358776898997


Q ss_pred             CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             79989999389837899--9999861-258489822763035554
Q gi|254780294|r   48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      .++|+|+=|.|....-+  ...++.+ ...++.+-+|+|.+....
T Consensus        81 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~  125 (283)
T PRK07660         81 KEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITE  125 (283)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH
T ss_conf             689999987857544429999999964799718986588887325


No 165
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process.
Probab=94.36  E-value=0.059  Score=31.34  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             CCE-EEEECCCCHHHHHHHHHHHCCC-CEEEEEEEC
Q ss_conf             907-9997588678999999986299-728999965
Q gi|254780294|r    1 MYK-IFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPC   34 (311)
Q Consensus         1 M~k-VaIvGATG~vG~~li~lL~~hp-~~~l~~l~s   34 (311)
                      |++ +.|+|+||=.|..-++++..|| .|++..|+.
T Consensus         2 ~K~~i~iLGSTGSIG~~TL~v~~~~~~~f~~~aL~~   37 (406)
T TIGR00243         2 LKQNIVILGSTGSIGKQTLDVVRHHPDKFQVVALSA   37 (406)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             755236743775013568999973887089986403


No 166
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.35  E-value=0.37  Score=26.40  Aligned_cols=87  Identities=16%  Similarity=0.189  Sum_probs=57.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---C-C----------------CC----------------CH
Q ss_conf             90799975886789999999862997289999653007---8-6----------------00----------------66
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---N-L----------------RY----------------RE   44 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g-~----------------~~----------------~~   44 (311)
                      +.||||||| |.-|+.+-.+++.+ .++++++..+..+   + .                ++                +-
T Consensus         3 Ik~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          3 IKVIGVVGS-GVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH
T ss_conf             588999887-68899999999958-9988999899899999999999718999999866899999999998366435888


Q ss_pred             HHHCCCCEEEECCCCHHHHHH--HHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             774799899993898378999--999861-258489822763035554
Q gi|254780294|r   45 DLLNAADVSILCLPDVASLEI--IQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        45 ~~~~~~Divf~a~p~~~s~~~--~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      +.++++|+|+=|.|.....+-  ..++.+ ...++.+-+|+|.+....
T Consensus        81 ~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~  128 (291)
T PRK06035         81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE  128 (291)
T ss_pred             HHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf             897659999988838899999999999965899837986088778699


No 167
>TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770   Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below : 2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds.   The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm.
Probab=94.26  E-value=0.4  Score=26.16  Aligned_cols=124  Identities=18%  Similarity=0.254  Sum_probs=74.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEEC---CCCCCCCC-------------CHH-------H--HCCCCEE-
Q ss_conf             907999758867899999998629-9728999965---30078600-------------667-------7--4799899-
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPC---EERHNLRY-------------RED-------L--LNAADVS-   53 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s---~~~ag~~~-------------~~~-------~--~~~~Div-   53 (311)
                      |+||||-||.|=-|+++|+.+.+. |.++|...--   .+..|+-+             .++       .  -.++|+. 
T Consensus         1 ~ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVli   80 (281)
T TIGR00036         1 LIKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLI   80 (281)
T ss_pred             CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf             98358847887346999999997489816788886168885665420242255478410005788999874023686478


Q ss_pred             EECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC
Q ss_conf             99389837899999986125848982276303555431100210004776520496077258421133112478888850
Q gi|254780294|r   54 ILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK  133 (311)
Q Consensus        54 f~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~  133 (311)
                      =|..|.++- +-+..+.+.|.. .|+=-++ |.-+..     -++..  +..-.+-.+|--||- +....+..+-+....
T Consensus        81 DFT~p~g~~-~~~~~a~~~Gv~-~V~GTTG-f~e~~~-----~~~~~--~a~~~~~~~v~A~NF-a~GV~~~~K~~~~aA  149 (281)
T TIGR00036        81 DFTTPEGVV-ENVKIALENGVR-LVVGTTG-FSEEDL-----QELRD--LAEKKGVAAVIAPNF-AIGVNLMFKLLEKAA  149 (281)
T ss_pred             ECCCCHHHH-HHHHHHHHCCCE-EEECCCC-CCHHHH-----HHHHH--HHHHCCCCEEEECCC-HHHHHHHHHHHHHHH
T ss_conf             738605678-999999966885-5771668-998999-----99999--998649978984650-689999999999998


Q ss_pred             CC
Q ss_conf             34
Q gi|254780294|r  134 LL  135 (311)
Q Consensus       134 ~i  135 (311)
                      +.
T Consensus       150 ~~  151 (281)
T TIGR00036       150 KY  151 (281)
T ss_pred             HH
T ss_conf             76


No 168
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.24  E-value=0.18  Score=28.36  Aligned_cols=81  Identities=14%  Similarity=0.243  Sum_probs=49.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEECCCCC---------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             0799975886789999999862997--289999653007---------8600---6677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD--LCLLSIPCEERH---------NLRY---REDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~--~~l~~l~s~~~a---------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .||+++|+ |--|+.+++=|.++..  -++.....+...         +.++   ..+..+++|++|+|.......+...
T Consensus         1 MkIgfIG~-GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP~~~~~vl~   79 (255)
T PRK06476          1 MRIGFIGT-GAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR   79 (255)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEEECHHHHHHHHH
T ss_conf             98999864-69999999999978899250889898989999999876955985788999851887888617888998877


Q ss_pred             HHHHCCCCEEEECCCCC
Q ss_conf             98612584898227630
Q gi|254780294|r   68 LIKKNGINSRIIDTSTA   84 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~   84 (311)
                      .+.-.. +..||+-.+-
T Consensus        80 ~l~~~~-~~~vISi~AG   95 (255)
T PRK06476         80 ALRFRP-GQTVISVIAA   95 (255)
T ss_pred             HHHCCC-CCEEEEECCC
T ss_conf             620578-9789997378


No 169
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.23  E-value=0.2  Score=28.03  Aligned_cols=35  Identities=14%  Similarity=0.310  Sum_probs=28.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             079997588678999999986299728999965300
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      +.|||-||+|.-|++|++.|..+ ...+..++++++
T Consensus       181 KTV~VTGASG~LG~aL~k~l~~~-GAKVIalTs~~~  215 (410)
T PRK07424        181 KTVAVTGASGTLGQALLKELHQQ-GAKVIALTSNSD  215 (410)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC
T ss_conf             67999547737789999999977-998999935898


No 170
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=94.20  E-value=0.12  Score=29.53  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=38.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC------------------C-----CHHHHCCCCE
Q ss_conf             079997588678999999986299728999965300------7860------------------0-----6677479989
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR------------------Y-----REDLLNAADV   52 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~------------------~-----~~~~~~~~Di   52 (311)
                      .||+|+|. ||||.-+--.|+++ ..++..+.-++.      .|+.                  +     ..+...++|+
T Consensus         1 MkI~ViGl-GyVGl~~a~~la~~-G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~   78 (185)
T pfam03721         1 MRIAVIGL-GYVGLPTAVCLAEI-GHDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADV   78 (185)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCE
T ss_conf             97999897-87489999999948-99399997998999998626897467588999987340896998787998844989


Q ss_pred             EEECCCCHH
Q ss_conf             999389837
Q gi|254780294|r   53 SILCLPDVA   61 (311)
Q Consensus        53 vf~a~p~~~   61 (311)
                      +|.|.|...
T Consensus        79 i~I~VpTP~   87 (185)
T pfam03721        79 IFIAVPTPS   87 (185)
T ss_pred             EEEECCCCC
T ss_conf             999736876


No 171
>PRK06813 homoserine dehydrogenase; Validated
Probab=94.20  E-value=0.25  Score=27.44  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=49.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC---------CCEEEEEEECCCC-----CCCCCC----------------H----HH-
Q ss_conf             07999758867899999998629---------9728999965300-----786006----------------6----77-
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR---------KDLCLLSIPCEER-----HNLRYR----------------E----DL-   46 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h---------p~~~l~~l~s~~~-----ag~~~~----------------~----~~-   46 (311)
                      +||+|+|- |.||+.++++|.++         -.+++..+++++.     .|..+.                +    .. 
T Consensus         3 i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~   81 (341)
T PRK06813          3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEERA   81 (341)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHHHH
T ss_conf             02999953-88999999999999999999749977999999686011376688878987503530235555542346663


Q ss_pred             --HCCCCEEEECCC-----CHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             --479989999389-----837899999986125848982276
Q gi|254780294|r   47 --LNAADVSILCLP-----DVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        47 --~~~~Divf~a~p-----~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                        .-+.|+++=|++     .+.+.+|...+.++|..  |+...
T Consensus        82 ~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~--VVTAN  122 (341)
T PRK06813         82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMD--IVAIS  122 (341)
T ss_pred             CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC--EEECC
T ss_conf             035567669991122135764589999999972996--89327


No 172
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=94.11  E-value=0.43  Score=25.98  Aligned_cols=92  Identities=22%  Similarity=0.307  Sum_probs=51.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCC---------CCC-------C-----HHHHCCCCEEEECCCC
Q ss_conf             0799975886789999999862-9972899996530078---------600-------6-----6774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQ-RKDLCLLSIPCEERHN---------LRY-------R-----EDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~-hp~~~l~~l~s~~~ag---------~~~-------~-----~~~~~~~Divf~a~p~   59 (311)
                      ++|-|-||+|..|.+|++.|.+ +....+..++..+..-         .++       +     +..+.++|+||-++-.
T Consensus         5 K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaAA~   84 (324)
T TIGR03589         5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAAL   84 (324)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCC
T ss_conf             99999079779999999999972998289996686403288985168987599967777889999763488899994627


Q ss_pred             -HH-----------------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
Q ss_conf             -37-----------------899999986125848982276303555431100
Q gi|254780294|r   60 -VA-----------------SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG   94 (311)
Q Consensus        60 -~~-----------------s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~   94 (311)
                       .|                 +.+....+.+.|.. ++|=.|++--..|--||+
T Consensus        85 khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vk-k~V~iSTDka~~P~n~yG  136 (324)
T TIGR03589        85 KQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAANPINLYG  136 (324)
T ss_pred             CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCC
T ss_conf             7672677698999999979999999998855543-178622688889967431


No 173
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.10  E-value=0.39  Score=26.25  Aligned_cols=86  Identities=16%  Similarity=0.190  Sum_probs=55.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CCC-C-----------------------CHHHHCCCCEE
Q ss_conf             90799975886789999999862997289999653007---860-0-----------------------66774799899
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NLR-Y-----------------------REDLLNAADVS   53 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~~-~-----------------------~~~~~~~~Div   53 (311)
                      |.||||||| |.-|+.+-.++..+ .+++..+..+..+   +++ +                       +-+.+.++|+|
T Consensus         5 Ik~VaViGA-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~l~a~~~aDlV   82 (310)
T PRK06130          5 IQNLAIIGA-GAMGSGIAALFASK-GLDVVLIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMDAGLEAACGADLV   82 (310)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHHHHCCCCEE
T ss_conf             888989787-79999999999858-9988999799999999999999986532766699987410213788896689999


Q ss_pred             EECCCCHHHHH--HHHHHHHC-CCCEEEECCCCCHHHH
Q ss_conf             99389837899--99998612-5848982276303555
Q gi|254780294|r   54 ILCLPDVASLE--IIQLIKKN-GINSRIIDTSTAHRIA   88 (311)
Q Consensus        54 f~a~p~~~s~~--~~~~~~~~-g~~~~vid~ss~~R~~   88 (311)
                      +=|.|....-+  +...+-+. ..++.+-+|+|.+...
T Consensus        83 iEav~E~l~iK~~lf~~le~~~~~~~IlASNTSsl~is  120 (310)
T PRK06130         83 IEAVPEKLDLKRDIFARLDTLCDPQTIFATNTSGLSIN  120 (310)
T ss_pred             EECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH
T ss_conf             98881778999999999860689883899648877606


No 174
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.07  E-value=0.44  Score=25.93  Aligned_cols=86  Identities=13%  Similarity=0.172  Sum_probs=57.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CCC----------------HHHH
Q ss_conf             9079997588678999999986299728999965300786-----------------006----------------6774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RYR----------------EDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~~----------------~~~~   47 (311)
                      +.||||||| |.-|+.+-.++..+ .+++.++..+..+-.                 ++.                -+.+
T Consensus         2 I~kV~ViGa-G~mG~~IA~~~a~~-G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~   79 (284)
T PRK07819          2 IQRVGVVGA-GQMGSGIAEVCARA-GVDVLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLEDL   79 (284)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH
T ss_conf             167999897-78999999999957-9908999798899999999999999999872789879999999637066899997


Q ss_pred             CCCCEEEECCCCHHHHH--HHHHHHHC-C-CCEEEECCCCCHHHH
Q ss_conf             79989999389837899--99998612-5-848982276303555
Q gi|254780294|r   48 NAADVSILCLPDVASLE--IIQLIKKN-G-INSRIIDTSTAHRIA   88 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~--~~~~~~~~-g-~~~~vid~ss~~R~~   88 (311)
                      .++|+|+=|.|.....+  ...++-+. . .++.+-+|+|.+...
T Consensus        80 ~~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is  124 (284)
T PRK07819         80 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM  124 (284)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf             659999990738788889999999974289985999658887613


No 175
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=94.00  E-value=0.4  Score=26.17  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=50.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC----C-----------------------------CHHHHCC
Q ss_conf             799975886789999999862997289999653007860----0-----------------------------6677479
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR----Y-----------------------------REDLLNA   49 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~----~-----------------------------~~~~~~~   49 (311)
                      ||||+|| |.-|+.+-.++..+ .++++.+..+..+-.+    +                             +-+.+.+
T Consensus         1 kV~ViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~   78 (180)
T pfam02737         1 KVAVIGA-GTMGAGIAQVFARA-GLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVD   78 (180)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCC
T ss_conf             9899997-88999999999967-993999979989999999999998999997256756769999852410588999758


Q ss_pred             CCEEEECCCCHHHHH--HHHHHHHC-CCCEEEECCCCCHHHH
Q ss_conf             989999389837899--99998612-5848982276303555
Q gi|254780294|r   50 ADVSILCLPDVASLE--IIQLIKKN-GINSRIIDTSTAHRIA   88 (311)
Q Consensus        50 ~Divf~a~p~~~s~~--~~~~~~~~-g~~~~vid~ss~~R~~   88 (311)
                      +|+|+=|.|.....+  +..++.+. ..++.+-+|+|.+...
T Consensus        79 adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is  120 (180)
T pfam02737        79 ADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT  120 (180)
T ss_pred             CCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHH
T ss_conf             999999251768899999999997430330887526768999


No 176
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.00  E-value=0.45  Score=25.84  Aligned_cols=85  Identities=14%  Similarity=0.162  Sum_probs=56.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------C-------CCCCHHHHCCCCEEEECCCC----H
Q ss_conf             90799975886789999999862997289999653007---------8-------60066774799899993898----3
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------N-------LRYREDLLNAADVSILCLPD----V   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g-------~~~~~~~~~~~Divf~a~p~----~   60 (311)
                      ++||.|+|. |-.|.-+.++|.++ ..++.....+...         |       ....+..+.++|+++.+-+=    .
T Consensus         7 ~k~vlV~Gl-G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p   84 (501)
T PRK02006          7 RPMVLVLGL-GESGLAMARWCARH-GCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP   84 (501)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC
T ss_conf             983999833-68899999999978-9849999899998619999860898189778898678468999998990088885


Q ss_pred             HHHHHHHHHHHCCCCEEEE-CCCCCHHHHH
Q ss_conf             7899999986125848982-2763035554
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRII-DTSTAHRIAP   89 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~   89 (311)
                      ...++..++.++|+.  |+ |.--.+|.-+
T Consensus        85 ~~~~~l~~A~~~gi~--i~~eiel~~~~~~  112 (501)
T PRK02006         85 ALAALLAAARERGIP--VWGELELFAQALA  112 (501)
T ss_pred             CHHHHHHHHHHCCCC--EEEHHHHHHHHHH
T ss_conf             431999999987995--8768999998876


No 177
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.99  E-value=0.084  Score=30.37  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC-CC-------------------HHHHCCCCEEE
Q ss_conf             9079997588678999999986299728999965300------7860-06-------------------67747998999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR-YR-------------------EDLLNAADVSI   54 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~-~~-------------------~~~~~~~Divf   54 (311)
                      |.||+|+|. ||||.-+--.|++. .+++..+.-.+.      .|+. +.                   .....++|++|
T Consensus         3 ~kkI~ViGl-GYVGL~~a~~lA~~-G~~Vig~D~d~~kv~~l~~g~~p~~Ep~l~~ll~~~~~~~~l~~t~~~~~ad~ii   80 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASR-QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKAAVEGGYLRATTTPVPADAFL   80 (415)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHCCEEE
T ss_conf             887999886-87789999999968-8948999899999999978689988989899999998659836525746789999


Q ss_pred             ECCCCH
Q ss_conf             938983
Q gi|254780294|r   55 LCLPDV   60 (311)
Q Consensus        55 ~a~p~~   60 (311)
                      .|.|..
T Consensus        81 I~V~TP   86 (415)
T PRK11064         81 IAVPTP   86 (415)
T ss_pred             EECCCC
T ss_conf             988999


No 178
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.91  E-value=0.44  Score=25.96  Aligned_cols=80  Identities=23%  Similarity=0.279  Sum_probs=55.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCCCC---HHHHCCCCEEEECCCCHHHHHHHHH--
Q ss_conf             0799975886789999999862997289999653007--------86006---6774799899993898378999999--
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLRYR---EDLLNAADVSILCLPDVASLEIIQL--   68 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~~~---~~~~~~~Divf~a~p~~~s~~~~~~--   68 (311)
                      .|||.||- |.-|.-|-+-|.+. -++++...-+..+        |-+..   .+...++|++|.|+|++..-+-+-.  
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~a-G~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~   78 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKA-GHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGE   78 (286)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEECCCHHHHHHHHHCC
T ss_conf             90799857-35259999999977-98789980885665689997298003889999961998999617989999998185


Q ss_pred             --HHH---CCCCEEEECCCCCH
Q ss_conf             --861---25848982276303
Q gi|254780294|r   69 --IKK---NGINSRIIDTSTAH   85 (311)
Q Consensus        69 --~~~---~g~~~~vid~ss~~   85 (311)
                        +.+   .|  ..+||.|+--
T Consensus        79 ~g~~~~~~~G--~i~IDmSTis   98 (286)
T COG2084          79 NGLLEGLKPG--AIVIDMSTIS   98 (286)
T ss_pred             CCHHHCCCCC--CEEEECCCCC
T ss_conf             3353337899--7899878999


No 179
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.86  E-value=0.45  Score=25.88  Aligned_cols=145  Identities=19%  Similarity=0.173  Sum_probs=79.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--------------------CCCCCCCHHHHCCCCEEEECCCCHH
Q ss_conf             07999758867899999998629972899996530--------------------0786006677479989999389837
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--------------------RHNLRYREDLLNAADVSILCLPDVA   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--------------------~ag~~~~~~~~~~~Divf~a~p~~~   61 (311)
                      .++.|+|+ |-+|..+-+.|.+..+ ++..+...+                    .-...+.+....++|+++.+++++.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~   78 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE   78 (225)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCH
T ss_conf             98999898-5788999999987899-089997688999986320004499992688989998679863899999808867


Q ss_pred             HHHHHHHHH-H-CCCCEEEECCCCCHHHHHHHHHC-CCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             899999986-1-25848982276303555431100-21000477652049607725842113311247888885034556
Q gi|254780294|r   62 SLEIIQLIK-K-NGINSRIIDTSTAHRIAPGWVYG-FPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDR  138 (311)
Q Consensus        62 s~~~~~~~~-~-~g~~~~vid~ss~~R~~~~vpl~-vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~  138 (311)
                      ..-.+-.+. + .|...++.-..+...++.-..++ .--++|+..-..+-.+.+..|+-....      ++..  .  +.
T Consensus        79 ~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~------~~~~--~--~~  148 (225)
T COG0569          79 VNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPGALDVL------ELAG--G--DA  148 (225)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHHEEE------ECCC--C--CC
T ss_conf             999999999987399849999569416778986799489755899999999985388631034------4269--9--72


Q ss_pred             CCEEEEEECCCCCCCCCCCH
Q ss_conf             50267651233335610000
Q gi|254780294|r  139 YPITINAVSGYTGGGKKLIS  158 (311)
Q Consensus       139 ~~~~~~~~sg~sgaG~~~~~  158 (311)
                      ..+......+....|+...+
T Consensus       149 ~~~~~~v~~~~~~~g~~L~e  168 (225)
T COG0569         149 EVIEEKVAEDSPLAGKTLRE  168 (225)
T ss_pred             EEEEEEECCCCCCCCCCHHH
T ss_conf             38999935898257759899


No 180
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.77  E-value=0.5  Score=25.58  Aligned_cols=70  Identities=13%  Similarity=0.069  Sum_probs=47.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CC------CCCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             079997588678999999986299728999965300--------78------6006677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HN------LRYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag------~~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .+|-|||+ |.|+.+=++.|.+.. ..++.++-+-+        .|      +.|...++.++++||.|+++....+.+.
T Consensus        11 k~vLVVGG-G~vA~rK~~~Ll~~g-A~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT~d~~~N~~i~   88 (202)
T PRK06718         11 KRVVIVGG-GKVAGRRAITLLKYG-AHITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAATNDPRVNEAVA   88 (202)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCHHHHHHHH
T ss_conf             86999889-899999999998689-9699986999989999997699447616788667516704455279899999999


Q ss_pred             HHHHCC
Q ss_conf             986125
Q gi|254780294|r   68 LIKKNG   73 (311)
Q Consensus        68 ~~~~~g   73 (311)
                      .....|
T Consensus        89 ~~~~~~   94 (202)
T PRK06718         89 EALPEN   94 (202)
T ss_pred             HHHHHC
T ss_conf             986544


No 181
>PRK07680 late competence protein ComER; Validated
Probab=93.73  E-value=0.22  Score=27.85  Aligned_cols=84  Identities=10%  Similarity=0.267  Sum_probs=49.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCCCC---------CCCC---CHHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             0799975886789999999862997---289999653007---------8600---667747998999938983789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEERH---------NLRY---REDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~~a---------g~~~---~~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      .||+++|+ |--|+.+++=|.+...   .++.....+...         |..+   ..+...++|++|+|.-...-.+..
T Consensus         1 MkI~fIG~-GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~~~~vl   79 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICVKPLDIYPLL   79 (273)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEECCHHHHHHHH
T ss_conf             98999876-99999999999977998945699988998999999987699088688899984099899964888899999


Q ss_pred             HHHHHC-CCCEEEECCCCCHH
Q ss_conf             998612-58489822763035
Q gi|254780294|r   67 QLIKKN-GINSRIIDTSTAHR   86 (311)
Q Consensus        67 ~~~~~~-g~~~~vid~ss~~R   86 (311)
                      ..+... ..+..||+-.+-..
T Consensus        80 ~~i~~~~~~~~~iISi~AGis  100 (273)
T PRK07680         80 KKLAPHFSDEKCLVSITSPIS  100 (273)
T ss_pred             HHHHHHCCCCCEEEEECCCCC
T ss_conf             998863478848999558888


No 182
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=93.71  E-value=0.39  Score=26.27  Aligned_cols=89  Identities=18%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-------------------CHHHHCCCCEEE--------
Q ss_conf             07999758867899999998629972899996530078600-------------------667747998999--------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY-------------------REDLLNAADVSI--------   54 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~-------------------~~~~~~~~Divf--------   54 (311)
                      .||-|+|+.|+.|-.|.+.|.++...|+..+.-.+++-.++                   -+...++||+++        
T Consensus       316 ~~vlilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlplvaiatp  395 (660)
T PRK08125        316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATP  395 (660)
T ss_pred             EEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHCCH
T ss_conf             27999834413678999998503885899886575345575349954888156146689999887545767320553474


Q ss_pred             ----------ECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf             ----------938983789999998612584898227630355543
Q gi|254780294|r   55 ----------LCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG   90 (311)
Q Consensus        55 ----------~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~   90 (311)
                                |-++=+.--+.+..+.+.+.....=+.|--|-|-+|
T Consensus       396 ~~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d  441 (660)
T PRK08125        396 IEYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTD  441 (660)
T ss_pred             HHHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCC
T ss_conf             7763486047873267552899999974877896560551014788


No 183
>PRK06444 prephenate dehydrogenase; Provisional
Probab=93.62  E-value=0.27  Score=27.20  Aligned_cols=61  Identities=23%  Similarity=0.328  Sum_probs=48.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      .++.|+|+-|=-|+.|.++|.+- .++++                ..+.|++|.|+|=..+.++..   ..|  ..+||.
T Consensus         1 ~~~~iig~~gr~g~~~~~~~~~~-g~~v~----------------i~k~D~ifiaVPI~~~~~iI~---~~~--~tiiDv   58 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY----------------IKKADHAFLSVPIDAALNYIE---SYD--NNFVEI   58 (197)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCC-CCEEE----------------ECCCCEEEEEEEHHHHHHHHH---HCC--CEEEEE
T ss_conf             91699637871668999997037-84789----------------727888999824588899998---479--738998


Q ss_pred             CCC
Q ss_conf             630
Q gi|254780294|r   82 STA   84 (311)
Q Consensus        82 ss~   84 (311)
                      +|-
T Consensus        59 ~SV   61 (197)
T PRK06444         59 SSV   61 (197)
T ss_pred             EEC
T ss_conf             863


No 184
>pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389.
Probab=93.62  E-value=0.22  Score=27.81  Aligned_cols=59  Identities=24%  Similarity=0.314  Sum_probs=39.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCCC--HHHHCCCCEEEECCCCHHH
Q ss_conf             0799975886789999999862997289999653007-----86006--6774799899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRYR--EDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~~--~~~~~~~Divf~a~p~~~s   62 (311)
                      .+|+|+|. |-+|+++.+++..- ..++..+......     +.+..  ++.++++|++++++|-...
T Consensus        37 k~vgIiG~-G~IG~~va~~l~~f-g~~V~~~d~~~~~~~~~~~~~~~~l~~ll~~sDii~~~~plt~~  102 (176)
T pfam02826        37 KTVGIIGL-GRIGRAVARRLKAF-GMKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPE  102 (176)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHCCEEECCHHHHHHHCCEEEECCCCCCC
T ss_conf             99999896-99999999999983-98125437987610231571666899998629988754767420


No 185
>pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain.
Probab=93.54  E-value=0.29  Score=27.02  Aligned_cols=103  Identities=12%  Similarity=0.143  Sum_probs=63.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      +++.|+|.+..||+-|-.+|.++ ...++...|...    --.+...+.|+++.|.+..--  +-+...+.|  ..|||-
T Consensus        37 k~vvViGrS~iVG~Pla~lL~~~-~atVtichs~T~----nl~~~~~~ADIvI~A~G~p~~--i~~~~ik~g--avvIDv  107 (159)
T pfam02882        37 KNVVVIGRSNIVGKPLALLLLNA-NATVTVCHSKTK----DLAEITREADIVVVAVGKPGL--IKADWVKPG--AVVIDV  107 (159)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCC----CHHHHHHCCCEEEEECCCCCC--CCHHHCCCC--CEEEEE
T ss_conf             66999888731489999999877-998999818999----978963003444231588550--569885899--889980


Q ss_pred             CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             630355543110021000477652049607725842
Q gi|254780294|r   82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      .-.+--+..   .+-.++.+..+.. .+.+--.||-
T Consensus       108 Gi~~~~~gk---l~GDvd~~~v~~~-a~~iTPVPGG  139 (159)
T pfam02882       108 GINRVENGK---LVGDVDFENVKEK-ASAITPVPGG  139 (159)
T ss_pred             CCCCCCCCC---EECCCCHHHHHHH-CEEECCCCCC
T ss_conf             220658996---7578777899964-7286899995


No 186
>KOG1494 consensus
Probab=93.54  E-value=0.16  Score=28.66  Aligned_cols=36  Identities=14%  Similarity=0.059  Sum_probs=26.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCC
Q ss_conf             907999758867899999998629972-899996530
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEE   36 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~   36 (311)
                      ++||||+||.|=.||-|=-||-..|.+ +|.+..-..
T Consensus        28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~   64 (345)
T KOG1494          28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN   64 (345)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEECCC
T ss_conf             6249997348766756899974285523013332036


No 187
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=93.54  E-value=0.16  Score=28.68  Aligned_cols=60  Identities=17%  Similarity=0.194  Sum_probs=34.3

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCCCCC---------HHHHC-CCCEEEECCCCHHHHH
Q ss_conf             9997588678999999986299728999965300-786006---------67747-9989999389837899
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-HNLRYR---------EDLLN-AADVSILCLPDVASLE   64 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-ag~~~~---------~~~~~-~~Divf~a~p~~~s~~   64 (311)
                      |+|-|+||++|+.|...|.+. .-+++.++-+.. +...+.         ++... ++|+|+-=++..+..+
T Consensus         1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~I~~r   71 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEPIAER   71 (297)
T ss_pred             CEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf             957356650168999999848-98699997478502332476533430124403678778998889815446


No 188
>PRK09897 hypothetical protein; Provisional
Probab=93.49  E-value=0.13  Score=29.17  Aligned_cols=42  Identities=26%  Similarity=0.365  Sum_probs=33.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC--CCCCCC
Q ss_conf             907999758867899999998629-9728999965300--786006
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER--HNLRYR   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~--ag~~~~   43 (311)
                      |.||||||+ |=+|--.++-|.++ ..++|+.+-...+  +|+.|+
T Consensus         1 mkrIAivG~-GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs   45 (535)
T PRK09897          1 MKKIAIVGA-GPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYS   45 (535)
T ss_pred             CCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf             950799667-862499999986469982699982156677899868


No 189
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.44  E-value=0.36  Score=26.49  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=47.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CCCCCC---------------HHHHCCCCEEEECCCC
Q ss_conf             079997588678999999986299728999965300-------786006---------------6774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-------HNLRYR---------------EDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-------ag~~~~---------------~~~~~~~Divf~a~p~   59 (311)
                      .||+|+|| |.+|.-+=-.|.+.. .++++++..+.       .|.++.               ......+|++|.|+..
T Consensus         1 MkI~IiGa-GaiG~~~a~~L~~ag-~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs   78 (307)
T PRK06522          1 MKIAILGA-GAIGGLFGARLAQAG-HDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAVKA   78 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEECCC
T ss_conf             98999991-499999999998489-9889997888899999968939952897698055034886674898889998066


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             378999999861
Q gi|254780294|r   60 VASLEIIQLIKK   71 (311)
Q Consensus        60 ~~s~~~~~~~~~   71 (311)
                      ....+..+.+..
T Consensus        79 ~~~~~a~~~l~~   90 (307)
T PRK06522         79 YQLPAALPDLAP   90 (307)
T ss_pred             CCHHHHHHHHHH
T ss_conf             689999999986


No 190
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.40  E-value=0.41  Score=26.15  Aligned_cols=69  Identities=25%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-------------------CCCHHHHCCCCEEEECCCCHHH
Q ss_conf             079997588678999999986299728999965300786-------------------0066774799899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-------------------RYREDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-------------------~~~~~~~~~~Divf~a~p~~~s   62 (311)
                      .||-|+|| |-||..|-+.|.+. .-++..+..++..-+                   .+.+...+++|+++.+++++..
T Consensus         1 M~IiI~Ga-G~vG~~La~~Ls~e-~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~De~   78 (455)
T PRK09496          1 MKIIILGA-GQVGGTLAERLVGE-NNDVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSDET   78 (455)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCHHH
T ss_conf             97999998-88999999999868-99799998999999998862586899966899999996599869999995797189


Q ss_pred             HHHHHHHHHC
Q ss_conf             9999998612
Q gi|254780294|r   63 LEIIQLIKKN   72 (311)
Q Consensus        63 ~~~~~~~~~~   72 (311)
                      .-.+-.+++.
T Consensus        79 Nli~~~lAk~   88 (455)
T PRK09496         79 NMVACQIAKS   88 (455)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 191
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.31  E-value=0.6  Score=25.10  Aligned_cols=78  Identities=10%  Similarity=0.076  Sum_probs=52.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------------CCCCCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             079997588678999999986299728999965300--------------786006677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------------HNLRYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------------ag~~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      +||-|||+ |-|+.+=++.|.+. ...++.++-+=+              .-+.|.+.++.+.++||.|+.+..-.+.+.
T Consensus        25 lkvLVVGG-G~VA~RKi~~Ll~a-gA~VtVVSP~~~~el~~L~~~~~I~~i~r~y~~~dL~~~~LVIaATdd~~lN~~I~  102 (222)
T PRK05562         25 IKVLVIGG-GKAAFIKGKTFLKK-GCYVEILSKEFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIIIATDDEELNNKIR  102 (222)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCCEEEEECCCHHHHHHHH
T ss_conf             66999998-79999999999878-99899987866889999997598699968679778088739999479889999999


Q ss_pred             -HHHHCCCCEEEECC
Q ss_conf             -98612584898227
Q gi|254780294|r   68 -LIKKNGINSRIIDT   81 (311)
Q Consensus        68 -~~~~~g~~~~vid~   81 (311)
                       .+.+.|.-+-+.|.
T Consensus       103 ~~a~~~~ilvNvvdd  117 (222)
T PRK05562        103 KHCDRLYKLYIDCSD  117 (222)
T ss_pred             HHHHHHCCEEEECCC
T ss_conf             999980998898578


No 192
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.30  E-value=0.6  Score=25.09  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=40.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-----CCCCCCC----------------HHHHCCCCEEEECCCCH
Q ss_conf             07999758867899999998629972899996530-----0786006----------------67747998999938983
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-----RHNLRYR----------------EDLLNAADVSILCLPDV   60 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-----~ag~~~~----------------~~~~~~~Divf~a~p~~   60 (311)
                      .||+|+|| |.+|.-+=-.|.+. -.++++++.++     +.|.+++                .+....+|++|+|+=.-
T Consensus         6 ~kI~IiGa-GAiG~~~a~~L~~a-G~~V~li~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~vKs~   83 (313)
T PRK06249          6 PRIAIIGT-GAIGGFYGAMLARA-GFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVLVGLKTT   83 (313)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEEEECCCC
T ss_conf             88999991-49999999999966-99569996755999986885999669828976840236977839965899953667


Q ss_pred             HHHHHHH
Q ss_conf             7899999
Q gi|254780294|r   61 ASLEIIQ   67 (311)
Q Consensus        61 ~s~~~~~   67 (311)
                      .....++
T Consensus        84 ~~~~~~~   90 (313)
T PRK06249         84 ANALLAP   90 (313)
T ss_pred             CHHHHHH
T ss_conf             7899999


No 193
>PRK06392 homoserine dehydrogenase; Provisional
Probab=93.15  E-value=0.63  Score=24.96  Aligned_cols=79  Identities=20%  Similarity=0.279  Sum_probs=50.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-------CEEEEEEECCCC-----CCCC------------C----------CHHHH
Q ss_conf             079997588678999999986299-------728999965300-----7860------------0----------66774
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-------DLCLLSIPCEER-----HNLR------------Y----------REDLL   47 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-------~~~l~~l~s~~~-----ag~~------------~----------~~~~~   47 (311)
                      +||||+|- |.||+.++++|.++.       .+++..++.++.     .|..            +          .+..-
T Consensus         1 i~I~l~G~-G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (326)
T PRK06392          1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE   79 (326)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHHC
T ss_conf             97999957-88999999999974999984899379999961010146568898885212232344444200044456645


Q ss_pred             CCCCEEEECCCCH----HHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             7998999938983----78999999861258489822763
Q gi|254780294|r   48 NAADVSILCLPDV----ASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        48 ~~~Divf~a~p~~----~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      .+.|+++=|.|..    .+..+...+.++|..  ||....
T Consensus        80 ~~~dvive~~~~~~~g~~~~~~~~~aL~~Gkh--VVTANK  117 (326)
T PRK06392         80 IKPDVIVDVTPASKDGIREKNLYINAFEHGID--VVTANK  117 (326)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EECCCC
T ss_conf             68987999302775442269999999987996--997796


No 194
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308   Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products..
Probab=93.13  E-value=0.16  Score=28.66  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=31.8

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             79997588678999999986299728999965300
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      .|.|-|| |=||++|+++|+..|.++|+++.+++.
T Consensus       117 ~v~lFGA-GHVG~ALv~~La~lP~~~~~WvD~Re~  150 (270)
T TIGR02964       117 HVVLFGA-GHVGRALVRALAPLPECRVTWVDSREE  150 (270)
T ss_pred             EEEEECC-CHHHHHHHHHHCCCCCEEEEEEECCHH
T ss_conf             1799867-718889999861699579998637155


No 195
>KOG2741 consensus
Probab=93.03  E-value=0.66  Score=24.85  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=56.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC--CEEEEEEECCCC-CCC------------CC--CHHHHC--CCCEEEECCCCHHH
Q ss_conf             079997588678999999986299--728999965300-786------------00--667747--99899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK--DLCLLSIPCEER-HNL------------RY--REDLLN--AADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp--~~~l~~l~s~~~-ag~------------~~--~~~~~~--~~Divf~a~p~~~s   62 (311)
                      +|+||+|+ |..++.+++-|..-|  ...+..+++.+. .-+            -+  .|+..+  +||++..+.|+..-
T Consensus         7 ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH   85 (351)
T KOG2741           7 IRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH   85 (351)
T ss_pred             EEEEEEEH-HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCH
T ss_conf             58988604-67789999972147545827999965527889999986599987425579988249876879967998008


Q ss_pred             HHHHHHHHHCCCC
Q ss_conf             9999998612584
Q gi|254780294|r   63 LEIIQLIKKNGIN   75 (311)
Q Consensus        63 ~~~~~~~~~~g~~   75 (311)
                      .+++-.+.+.|..
T Consensus        86 ~evv~l~l~~~K~   98 (351)
T KOG2741          86 YEVVMLALNKGKH   98 (351)
T ss_pred             HHHHHHHHHCCCC
T ss_conf             9999999975995


No 196
>KOG1198 consensus
Probab=93.02  E-value=0.52  Score=25.46  Aligned_cols=72  Identities=14%  Similarity=0.218  Sum_probs=48.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC--------C--CCCH-----HH----HCCCCEEEECCCCHHHH
Q ss_conf             7999758867899999998629972899996530078--------6--0066-----77----47998999938983789
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN--------L--RYRE-----DL----LNAADVSILCLPDVASL   63 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag--------~--~~~~-----~~----~~~~Divf~a~p~~~s~   63 (311)
                      +|-|.||+|-||+..++|...+....+...+|+++.-        .  .|++     ..    ..++|++|=|.++....
T Consensus       160 ~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~~~~  239 (347)
T KOG1198         160 SVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGSTLT  239 (347)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf             69999387489999999998749747999815541689997299651248857799998762278850999888897324


Q ss_pred             HHHHHHHHCCC
Q ss_conf             99999861258
Q gi|254780294|r   64 EIIQLIKKNGI   74 (311)
Q Consensus        64 ~~~~~~~~~g~   74 (311)
                      .-...+...|.
T Consensus       240 ~~~~~l~~~g~  250 (347)
T KOG1198         240 KSLSCLLKGGG  250 (347)
T ss_pred             HHHHHHCCCCC
T ss_conf             32343323787


No 197
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.00  E-value=0.67  Score=24.81  Aligned_cols=78  Identities=10%  Similarity=0.085  Sum_probs=52.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-----------CCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             0799975886789999999862997289999653-----------00786006677479989999389837899999986
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-----------ERHNLRYREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-----------~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .+|-|||+ |-|+.+=++.|.+.. ..++.++-+           +-..+.+.+.++.++|+||.|+.+..-...+....
T Consensus        14 k~vLVvGG-G~VA~rK~~~Ll~~g-a~VtVvsp~~~~el~~l~~i~~~~r~~~~~dl~~~~lViaATdd~~lN~~i~~~a   91 (157)
T PRK06719         14 KVVVIIGG-GKIAYRKASGLKDTG-AFVTVVSPEICEEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAA   91 (157)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHCCCEEEECCCCCHHHHCCCEEEEECCCCHHHHHHHHHHH
T ss_conf             87999889-899999999998787-9699999986899984557088704678468378439998689989999999999


Q ss_pred             HCCCCEEEECC
Q ss_conf             12584898227
Q gi|254780294|r   71 KNGINSRIIDT   81 (311)
Q Consensus        71 ~~g~~~~vid~   81 (311)
                      +...-+-+.|+
T Consensus        92 ~~~~lvN~~d~  102 (157)
T PRK06719         92 HDFQWVNVVSD  102 (157)
T ss_pred             HHCCCEEEECC
T ss_conf             77895898289


No 198
>KOG2711 consensus
Probab=92.96  E-value=0.54  Score=25.39  Aligned_cols=90  Identities=16%  Similarity=0.098  Sum_probs=59.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC----CCCEE--EE-EEECCCCCC--CCCC----------------------------H
Q ss_conf             0799975886789999999862----99728--99-996530078--6006----------------------------6
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQ----RKDLC--LL-SIPCEERHN--LRYR----------------------------E   44 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~----hp~~~--l~-~l~s~~~ag--~~~~----------------------------~   44 (311)
                      +||+|||+ |.=|..+.+++.+    ||.|+  ++ +...++--|  +++.                            .
T Consensus        22 ~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~  100 (372)
T KOG2711          22 LKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV  100 (372)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHH
T ss_conf             37999816-80899999998652540556673036777501337705789987515563423367865997767652399


Q ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHH
Q ss_conf             77479989999389837899999986125-8489822763035554311
Q gi|254780294|r   45 DLLNAADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        45 ~~~~~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vp   92 (311)
                      +..++.|+++|++||.....+...+...= ..+..|+++.-+....+-|
T Consensus       101 ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~  149 (372)
T KOG2711         101 EAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGP  149 (372)
T ss_pred             HHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCC
T ss_conf             8843388899948715479999998542579980788540414168888


No 199
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=92.90  E-value=0.35  Score=26.54  Aligned_cols=77  Identities=19%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-----CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH---HHHHHHHHHHC
Q ss_conf             907999758867899999998629-----9728999965300786006677479989999389837---89999998612
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-----KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA---SLEIIQLIKKN   72 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-----p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~---s~~~~~~~~~~   72 (311)
                      |++|+|||+ |..|...---|.+.     +.++++.+-++...|-.+.....  -+++|=.-|...   .......+.+.
T Consensus         1 Mk~vaVIGg-GISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T~~~--~g~~~E~GP~s~~~~~~~~~~L~~eL   77 (466)
T PRK12416          1 MKTVVVIGG-GITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--KDFIMESGADSIVARNEHVMPLVKDL   77 (466)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEE--CCEEEECCCCCCCCCCHHHHHHHHHC
T ss_conf             975999899-789999999998725555899867999779988677989973--99997559860034887899999986


Q ss_pred             CCCEEEEC
Q ss_conf             58489822
Q gi|254780294|r   73 GINSRIID   80 (311)
Q Consensus        73 g~~~~vid   80 (311)
                      |..-.+|.
T Consensus        78 GL~d~li~   85 (466)
T PRK12416         78 NLEEEMVY   85 (466)
T ss_pred             CCCCCCCC
T ss_conf             99311446


No 200
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=92.63  E-value=0.55  Score=25.33  Aligned_cols=63  Identities=17%  Similarity=0.308  Sum_probs=44.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             79997588678999999986299728999965300786006677479989999389837899999986125848982276
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                      ||.|+|+ |++|-|+-..|.+. ..+++.+...++               .+-..+.+.+..+...+.+.|.  .+.-++
T Consensus         1 rv~iiGg-G~ig~E~A~~l~~~-G~~Vtiie~~~~---------------~l~~~d~~~~~~~~~~l~~~GV--~i~~~~   61 (82)
T pfam00070         1 RVVVVGG-GYIGLEFASALAKL-GSKVTVVERRDR---------------LLRGFDEEIAKILQEKLEKNGI--EVLLNT   61 (82)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCC---------------CCHHCCHHHHHHHHHHHHHCCC--EEECCC
T ss_conf             9999998-89999999999863-927899812573---------------3022798899999999986699--997499


Q ss_pred             CC
Q ss_conf             30
Q gi|254780294|r   83 TA   84 (311)
Q Consensus        83 s~   84 (311)
                      ..
T Consensus        62 ~v   63 (82)
T pfam00070        62 TV   63 (82)
T ss_pred             EE
T ss_conf             99


No 201
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.37  E-value=0.81  Score=24.29  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=25.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             799975886789999999862997289999653
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      ||-|.|++|++|..|++.|.++....+..+...
T Consensus         2 kILVTGg~GFIGs~l~~~Ll~~~~~~v~~vd~~   34 (352)
T PRK10084          2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKL   34 (352)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             799975100899999999997799889998479


No 202
>PRK06487 glycerate dehydrogenase; Provisional
Probab=92.27  E-value=0.47  Score=25.76  Aligned_cols=25  Identities=16%  Similarity=0.102  Sum_probs=13.4

Q ss_pred             HHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             77479989999389837899999986
Q gi|254780294|r   45 DLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus        45 ~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      +..+++|+++.. ...++++...++.
T Consensus        41 ~~~~dadi~i~~-~~~i~~~~l~~ap   65 (317)
T PRK06487         41 ERLQGAQVAISN-KVALDAAALAAAP   65 (317)
T ss_pred             HHHCCCCEEEEC-CCCCCHHHHHCCC
T ss_conf             984899199968-9712899993499


No 203
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.20  E-value=0.61  Score=25.05  Aligned_cols=85  Identities=11%  Similarity=0.121  Sum_probs=56.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             0799975886789999999862997289999653007-------860-----0667747998999938983789999998
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLR-----YREDLLNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                      .||+|+|+ |..|+...++|.++ ..++.....+...       |..     -..+.+.++|+++.+-+=.........+
T Consensus        13 k~V~V~Gl-G~sG~a~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~~a   90 (487)
T PRK03369         13 APVLVAGA-GVTGRAVLAALTRF-GARPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPPTAPVLAAA   90 (487)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf             98999915-68389999999978-69799998982577999865994863762265646778899899579989999999


Q ss_pred             HHCCCCEEEE-CCCCCHHHHHH
Q ss_conf             6125848982-27630355543
Q gi|254780294|r   70 KKNGINSRII-DTSTAHRIAPG   90 (311)
Q Consensus        70 ~~~g~~~~vi-d~ss~~R~~~~   90 (311)
                      .+.|..  |+ |.--+||++..
T Consensus        91 ~~~gi~--i~~eieL~~~~~~~  110 (487)
T PRK03369         91 AAAGVP--IWGDVELAWRLDAA  110 (487)
T ss_pred             HHCCCC--EEEHHHHHHHHHHC
T ss_conf             988990--76599999998744


No 204
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.15  E-value=0.86  Score=24.13  Aligned_cols=89  Identities=15%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----------CCCC-----CHHHHCCCCEEEECCCCHHHHH
Q ss_conf             90799975886789999999862997289999653007-----------8600-----6677479989999389837899
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----------NLRY-----REDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----------g~~~-----~~~~~~~~Divf~a~p~~~s~~   64 (311)
                      |.||+|+|- |-.|+...+.|.++- .+++....+...           +-++     ..+.+.++|+++.+=+=.....
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p   84 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP   84 (448)
T ss_pred             CCEEEEEEC-CCCCHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCCCCH
T ss_conf             997999926-651099999999779-869998389876532344442037223137641100134778998999999888


Q ss_pred             HHHHHHHCCCCEEEECCCCCHHHHHHHH
Q ss_conf             9999861258489822763035554311
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss~~R~~~~vp   92 (311)
                      ++.++...|.. .+-|..-+||..+..|
T Consensus        85 ~v~~A~~~gi~-i~~dieL~~r~~~~~p  111 (448)
T COG0771          85 LVEAAKAAGIE-IIGDIELFYRLSGEAP  111 (448)
T ss_pred             HHHHHHHCCCC-EEEHHHHHHHHCCCCC
T ss_conf             99999986993-7748888987448999


No 205
>PRK11728 hypothetical protein; Provisional
Probab=92.06  E-value=0.88  Score=24.06  Aligned_cols=90  Identities=17%  Similarity=0.266  Sum_probs=55.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC--------------CCCCC----------------HH----
Q ss_conf             907999758867899999998629-97289999653007--------------86006----------------67----
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH--------------NLRYR----------------ED----   45 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a--------------g~~~~----------------~~----   45 (311)
                      ||-|.|||| |-||.-+-+-|+++ |+.++..+-.+..-              |.-+.                .+    
T Consensus         2 ~yDvvIIGg-GIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~   80 (400)
T PRK11728          2 MYDFVIIGG-GIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ   80 (400)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             530999996-7999999999995599983999968999756335324232156435899999999999999999999998


Q ss_pred             ---HHCCCCEEEECCCCHHHH---HHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             ---747998999938983789---9999986125848982276303555431
Q gi|254780294|r   46 ---LLNAADVSILCLPDVASL---EIIQLIKKNGINSRIIDTSTAHRIAPGW   91 (311)
Q Consensus        46 ---~~~~~Divf~a~p~~~s~---~~~~~~~~~g~~~~vid~ss~~R~~~~v   91 (311)
                         .+..+.-.+.|...+.-.   ++..+..+.|..+..+|..-..+++|.+
T Consensus        81 ~~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~l~~~ei~~~eP~v  132 (400)
T PRK11728         81 HGIPYEVCGKLLVATSELELERMEALYERAAANGIEVERLDAEELREREPNI  132 (400)
T ss_pred             CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCC
T ss_conf             5999211686999779999999999999998569862896799999868865


No 206
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme.   Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.89  E-value=0.92  Score=23.95  Aligned_cols=106  Identities=14%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             07999758867899999998629972899996530078600667747998999938983789999998612584898227
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      +++.|+|-+..||+=|-.+|.++ ...++...|+.. .   -++...+.|+++.|.+..-.  +-+...+.|  ..|||-
T Consensus        45 k~vvViGrS~iVG~Pla~lL~~~-~atVt~chs~T~-~---l~~~~~~ADIvIsA~G~~~l--i~~~~vk~g--avvIDv  115 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKTK-N---LKEHTKQADIVIVAVGKPGL--VKGDMVKPG--AVVIDV  115 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHC-CCEEEEECCCCC-C---HHHHHHHCCEEEEECCCCCC--CCHHHCCCC--CEEEEC
T ss_conf             56999878730089999999848-997999768988-9---79974104535541587663--789995899--889966


Q ss_pred             CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             630355543110021000477652049607725842
Q gi|254780294|r   82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      .-.+-.|++---.+-.++.+..+.. .+.+...||-
T Consensus       116 Gin~~~~~~~~kl~GDvd~~~v~~~-a~~iTPVPGG  150 (168)
T cd01080         116 GINRVPDKSGGKLVGDVDFESAKEK-ASAITPVPGG  150 (168)
T ss_pred             CCCCCCCCCCCEEECCCCHHHHHHH-CEEECCCCCC
T ss_conf             6542334889846377888999864-6386899996


No 207
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.84  E-value=0.92  Score=23.95  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=51.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCCC-----HHHHCCCCEEEECCCCHHHHH
Q ss_conf             079997588678999999986299728999965300------------786006-----677479989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRYR-----EDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~~-----~~~~~~~Divf~a~p~~~s~~   64 (311)
                      .||+|+|. |..|+.+.++|.++ ..++.....+.+            .|.++.     .+.+.++|+|+.+-+=.....
T Consensus        15 kkv~i~Gl-G~sG~a~a~~L~~~-g~~v~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv~SPgI~~~~p   92 (458)
T PRK01710         15 KKVAVVGI-GVSNIPLIKFLVKL-GAKVTAFDKKSEEELGEISLELKEKGVNLELGENYLDKLTGFDVIFKTPSMRIDSP   92 (458)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEEECCCCCCCCH
T ss_conf             96999978-78899999999978-89799998988431489999998579989957840542378888998998799899


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99998612584
Q gi|254780294|r   65 IIQLIKKNGIN   75 (311)
Q Consensus        65 ~~~~~~~~g~~   75 (311)
                      +...+.++|+.
T Consensus        93 ~~~~a~~~gi~  103 (458)
T PRK01710         93 ELVKAKEEGAY  103 (458)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999987993


No 208
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089   This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. .
Probab=91.79  E-value=0.53  Score=25.44  Aligned_cols=84  Identities=10%  Similarity=0.246  Sum_probs=60.5

Q ss_pred             CEEEEECCC---CHHHHHHHHHHHCC-CCEEEEEEECCC---CCC-CCCC---HHH-HCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             079997588---67899999998629-972899996530---078-6006---677-47998999938983789999998
Q gi|254780294|r    2 YKIFIDGEH---GTTGLKIRSRIVQR-KDLCLLSIPCEE---RHN-LRYR---EDL-LNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         2 ~kVaIvGAT---G~vG~~li~lL~~h-p~~~l~~l~s~~---~ag-~~~~---~~~-~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                      .+|||+|||   |=||-..++=|-+- =.-+++-+=.+.   =-| .+..   .+. .+.+|+++.+.|....-+.+..+
T Consensus         8 ~SvAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~~i~i~Gr~k~Y~~~~~~dP~~VDLAVivvPa~~vp~v~eEC   87 (457)
T TIGR02717         8 KSVAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKAGIEILGRVKAYPSVLEIDPDEVDLAVIVVPAKLVPQVVEEC   87 (457)
T ss_pred             CCEEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHH
T ss_conf             71589712488985100220000037830368762278871463011457871114899734799972856799999998


Q ss_pred             HHCCCCEEEECCCCCHH
Q ss_conf             61258489822763035
Q gi|254780294|r   70 KKNGINSRIIDTSTAHR   86 (311)
Q Consensus        70 ~~~g~~~~vid~ss~~R   86 (311)
                      -++|....||=-|+ |+
T Consensus        88 G~KGVkg~vvI~AG-F~  103 (457)
T TIGR02717        88 GEKGVKGAVVITAG-FK  103 (457)
T ss_pred             HHCCCEEEEEECCC-CC
T ss_conf             61795189997148-64


No 209
>TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185   Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase..
Probab=91.70  E-value=0.76  Score=24.45  Aligned_cols=86  Identities=21%  Similarity=0.252  Sum_probs=58.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC---CCE--EEEEEECCC--CCC---CC---------------C----CHHHHCCCCE
Q ss_conf             07999758867899999998629---972--899996530--078---60---------------0----6677479989
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR---KDL--CLLSIPCEE--RHN---LR---------------Y----REDLLNAADV   52 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h---p~~--~l~~l~s~~--~ag---~~---------------~----~~~~~~~~Di   52 (311)
                      +||||+|.||=-|.=|.=.|+.-   |.-  +=.-+-|++  .|-   ++               +    ..+..+..|+
T Consensus         1 mkIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N~~AA~~aDV   80 (233)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEGAENEEAAKRADV   80 (233)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCE
T ss_conf             96788448884025699999870778787775557704884569999999999997089513625754887788723897


Q ss_pred             EEECCCCHHHHHHHHHHHHCCC-CEEEECCCCCHHH
Q ss_conf             9993898378999999861258-4898227630355
Q gi|254780294|r   53 SILCLPDVASLEIIQLIKKNGI-NSRIIDTSTAHRI   87 (311)
Q Consensus        53 vf~a~p~~~s~~~~~~~~~~g~-~~~vid~ss~~R~   87 (311)
                      |++++|-+........+++.=. ++.|||-.-..-.
T Consensus        81 Vil~vP~~~~~~~l~~~~~~L~~dK~Vis~~VPl~~  116 (233)
T TIGR01915        81 VILAVPFDHVLKTLESIKDELEADKIVISPVVPLAS  116 (233)
T ss_pred             EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf             899842222478999999985189289964787500


No 210
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=91.66  E-value=0.98  Score=23.79  Aligned_cols=84  Identities=5%  Similarity=0.088  Sum_probs=53.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEECCCCC-CCC------CCH----HHHCCCCEEEECCCCHHHHHH---
Q ss_conf             07999758867899999998629972--89999653007-860------066----774799899993898378999---
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPCEERH-NLR------YRE----DLLNAADVSILCLPDVASLEI---   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s~~~a-g~~------~~~----~~~~~~Divf~a~p~~~s~~~---   65 (311)
                      .+|+|||+ |-.|+++.+.+.++|+.  ++..+..++.. +..      +++    ..-.++|-++.|+|.......   
T Consensus       145 r~v~IvG~-~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~~~~~~lG~~~~l~~~~~~~~id~V~ialp~~~~~~i~~l  223 (464)
T PRK10124        145 RMVAVAGD-LPAGQMLLESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKKL  223 (464)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
T ss_conf             38999838-88999999999729667966999966887666789987899999999986899989996682368899999


Q ss_pred             HHHHHHCCCCEEEECCCCCHH
Q ss_conf             999861258489822763035
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTAHR   86 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~~R   86 (311)
                      ...+.+.+..++++-.-..|+
T Consensus       224 v~~l~~~~v~v~~vPd~~~~~  244 (464)
T PRK10124        224 VHQLADTTCSVLLIPDVFTFN  244 (464)
T ss_pred             HHHHHHCCCEEEEECCHHHHC
T ss_conf             999961895599946546521


No 211
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=91.52  E-value=1  Score=23.70  Aligned_cols=77  Identities=14%  Similarity=0.181  Sum_probs=49.9

Q ss_pred             EEECCCCHHHHHHHHHHHCCCCEEEE--EEECCCCCCCCCCHHH-----------HCCCCEEEECCCC------HHHHHH
Q ss_conf             99758867899999998629972899--9965300786006677-----------4799899993898------378999
Q gi|254780294|r    5 FIDGEHGTTGLKIRSRIVQRKDLCLL--SIPCEERHNLRYREDL-----------LNAADVSILCLPD------VASLEI   65 (311)
Q Consensus         5 aIvGATG~vG~~li~lL~~hp~~~l~--~l~s~~~ag~~~~~~~-----------~~~~Divf~a~p~------~~s~~~   65 (311)
                      .+.=+||+||.+.++.|..+|.++++  +..|...+||.+.+..           -.+.|+++.|...      + +-+-
T Consensus         5 vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~-~~~~   83 (350)
T COG3804           5 VVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP-SVDE   83 (350)
T ss_pred             EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCEEEECCCC-HHHH
T ss_conf             589625557799999997088971689995174001301787648888516865232220002666315610261-2999


Q ss_pred             HHHHHHCCCCEEEECCCCC
Q ss_conf             9998612584898227630
Q gi|254780294|r   66 IQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        66 ~~~~~~~g~~~~vid~ss~   84 (311)
                      ..++..+|.+  ||...+-
T Consensus        84 y~rlL~aGiN--Vv~~g~~  100 (350)
T COG3804          84 YARLLRAGIN--VVTPGPV  100 (350)
T ss_pred             HHHHHHCCCC--EECCCCC
T ss_conf             9999975870--6615853


No 212
>KOG2013 consensus
Probab=91.37  E-value=0.11  Score=29.76  Aligned_cols=68  Identities=12%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC---------------CCCCCCC-------------------------
Q ss_conf             079997588678999999986299728999965---------------3007860-------------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC---------------EERHNLR-------------------------   41 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s---------------~~~ag~~-------------------------   41 (311)
                      -||-+||| |=.|-||++.|.--..-+++.+..               +++.|+.                         
T Consensus        13 ~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI   91 (603)
T KOG2013          13 GRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANI   91 (603)
T ss_pred             CEEEEEEC-CCCCHHHHHHHHHHCCCEEEEEECCCEECCCHHHHHEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             71899905-73219999999982677057973253202101245502041227618899999999749777468511334


Q ss_pred             ----CCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             ----06677479989999389837899999986
Q gi|254780294|r   42 ----YREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus        42 ----~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                          +..++|...|+||.||++-.++.|+.+..
T Consensus        92 ~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C  124 (603)
T KOG2013          92 KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMC  124 (603)
T ss_pred             CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf             685327899999999998522398998988888


No 213
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.31  E-value=0.58  Score=25.17  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=51.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCC--C---------CCCHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             07999758867899999998629972899996-530078--6---------00667747998999938983789999998
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHN--L---------RYREDLLNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag--~---------~~~~~~~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                      +||+|+|. |..|....+.|.++  .+...+. ++....  +         .+.+..+.++|+++.+=+=....++...+
T Consensus         7 K~v~V~Gl-G~sG~a~~~~L~~~--~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iV~SPGI~~~~p~~~~a   83 (450)
T PRK01368          7 QKIGVFGL-GKTGISVYEELQNK--YDLIVYDDLKANRDIFEELFSKNAIIALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (450)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHCCCCEECCCCCCHHCCCEEEECCCCCCCCHHHHHH
T ss_conf             90899958-78799999999719--9989998996564789975214836025711152199999899619989999999


Q ss_pred             HHCCCCEEEE-CCCCCHHHHH
Q ss_conf             6125848982-2763035554
Q gi|254780294|r   70 KKNGINSRII-DTSTAHRIAP   89 (311)
Q Consensus        70 ~~~g~~~~vi-d~ss~~R~~~   89 (311)
                      .+.|..  |+ |.--+||..+
T Consensus        84 ~~~~i~--i~~eiel~~~~~~  102 (450)
T PRK01368         84 KNFNIP--ITSDIDLLFEKSK  102 (450)
T ss_pred             HHCCCC--EEEHHHHHHHHCC
T ss_conf             987995--8769999997667


No 214
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=91.31  E-value=1.1  Score=23.57  Aligned_cols=68  Identities=22%  Similarity=0.266  Sum_probs=45.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC----------------HHHHCCCCEEEECCCC
Q ss_conf             079997588678999999986299728999965300------786006----------------6774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR----------------EDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~----------------~~~~~~~Divf~a~p~   59 (311)
                      .||+|+|| |.+|.-+=-.|.+. ..++.+++..++      .|.++.                +.....+|++|+|+=.
T Consensus         1 MkI~I~Ga-GAiG~~~a~~L~~~-g~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~Ks   78 (306)
T PRK12921          1 MKIAVVGA-GAVGGTFGARLLEA-GRDVTFLGRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAVKA   78 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEECC
T ss_conf             98999992-49999999999836-99889997000999999789699977976998061050805656897689997045


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             378999999861
Q gi|254780294|r   60 VASLEIIQLIKK   71 (311)
Q Consensus        60 ~~s~~~~~~~~~   71 (311)
                      -...+..+.+..
T Consensus        79 ~~~~~a~~~l~~   90 (306)
T PRK12921         79 YQLDAAIPDLKP   90 (306)
T ss_pred             CCHHHHHHHHHH
T ss_conf             677999999986


No 215
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.28  E-value=1  Score=23.60  Aligned_cols=83  Identities=16%  Similarity=0.280  Sum_probs=55.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCC-C----CHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf             799975886789999999862997289999653007--------860-0----667747998999938983789999998
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLR-Y----REDLLNAADVSILCLPDVASLEIIQLI   69 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~-~----~~~~~~~~Divf~a~p~~~s~~~~~~~   69 (311)
                      ||.|+|. |-.|....++|.++ ..++.....++..        |.+ +    ..+.+.++|+++.+-+=.....+...+
T Consensus        19 kvlV~Gl-G~SG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~~a   96 (476)
T PRK00141         19 RVLVAGA-GVSGLGIAKMLSEL-GCDVVVADDNETQRHMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPDSPLLVDA   96 (476)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCCCHHHHHH
T ss_conf             8899922-78899999999978-997999989987035788747985651553065646899999899789979999999


Q ss_pred             HHCCCCEEEE-CCCCCHHHHH
Q ss_conf             6125848982-2763035554
Q gi|254780294|r   70 KKNGINSRII-DTSTAHRIAP   89 (311)
Q Consensus        70 ~~~g~~~~vi-d~ss~~R~~~   89 (311)
                      .+.|..  |+ |.--+||.+.
T Consensus        97 ~~~gi~--viseiel~~~~~~  115 (476)
T PRK00141         97 QSAGLE--VIGDVELAWRLDQ  115 (476)
T ss_pred             HHCCCC--EEEHHHHHHHHHH
T ss_conf             987995--7719999998611


No 216
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=91.16  E-value=1.1  Score=23.47  Aligned_cols=31  Identities=13%  Similarity=0.321  Sum_probs=25.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             07999758867899999998629972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      .||-|-||||++|..|++.|.+. ..++..+.
T Consensus         1 MkvLVTGg~GFIGs~l~~~Ll~~-g~~V~~~d   31 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD   31 (338)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEE
T ss_conf             91999898767999999999978-49899998


No 217
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=91.16  E-value=0.91  Score=23.99  Aligned_cols=26  Identities=19%  Similarity=0.166  Sum_probs=14.8

Q ss_pred             HHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             677479989999389837899999986
Q gi|254780294|r   44 EDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus        44 ~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .+...++|++.. ....++.+......
T Consensus        40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~   65 (324)
T COG0111          40 LEALADADALIV-SVTPVTEEVLAAAP   65 (324)
T ss_pred             HHHCCCCCEEEE-ECCCCCHHHHHCCC
T ss_conf             874033788999-36888999982188


No 218
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=91.11  E-value=1.1  Score=23.44  Aligned_cols=80  Identities=15%  Similarity=0.208  Sum_probs=55.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CC------CCCCHHHHCCCCEEEECCCC-HHHHHHH
Q ss_conf             079997588678999999986299728999965300--------78------60066774799899993898-3789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HN------LRYREDLLNAADVSILCLPD-VASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag------~~~~~~~~~~~Divf~a~p~-~~s~~~~   66 (311)
                      .+|.|+|. |-||.+=+++|.+- ..+++.++-+..        .+      ..+..+.+.+++++|-|+++ +..+.+.
T Consensus        13 k~VlvvGg-G~va~rKa~~ll~~-ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~   90 (210)
T COG1648          13 KKVLVVGG-GSVALRKARLLLKA-GADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIA   90 (210)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf             77999899-89999999999746-99799987874499999998348531002236365368249999169989999999


Q ss_pred             HHHHHCCCCEEEECCCC
Q ss_conf             99861258489822763
Q gi|254780294|r   67 QLIKKNGINSRIIDTST   83 (311)
Q Consensus        67 ~~~~~~g~~~~vid~ss   83 (311)
                      ..+.+.+.-+-++|...
T Consensus        91 ~~a~~~~i~vNv~D~p~  107 (210)
T COG1648          91 KAARERRILVNVVDDPE  107 (210)
T ss_pred             HHHHHHCCCEEECCCCC
T ss_conf             99999399356048846


No 219
>cd04510 consensus
Probab=90.88  E-value=0.77  Score=24.43  Aligned_cols=56  Identities=11%  Similarity=0.154  Sum_probs=40.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCC----CCCCC------------------CHHHHCCCCEE
Q ss_conf             07999758867899999998629------9728999965300----78600------------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEER----HNLRY------------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div   53 (311)
                      +||+|-||+|..|--|+-+|..-      ..+.|+++.....    .|-..                  -++.|+++|++
T Consensus         2 ~~V~VTGAAGqI~Y~Ll~~Ia~G~vfG~dq~V~L~Lldi~~~~~~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a   81 (334)
T cd04510           2 LQVWITSASAPVCYHLIPHLASGDVFGMLTEISIHLLDTSESEEMLKGLVMEVFDLAFPLLREVSVHTDVMLAFQQAHVI   81 (334)
T ss_pred             EEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEHHHCCCHHHCCEEEECCHHHHHCCCCEE
T ss_conf             09999577379999999998478766999759999668666788753305511404654338658857878973668889


Q ss_pred             EECC
Q ss_conf             9938
Q gi|254780294|r   54 ILCL   57 (311)
Q Consensus        54 f~a~   57 (311)
                      +|-.
T Consensus        82 ilvg   85 (334)
T cd04510          82 IVLD   85 (334)
T ss_pred             EEEC
T ss_conf             9970


No 220
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.79  E-value=0.86  Score=24.12  Aligned_cols=80  Identities=16%  Similarity=0.204  Sum_probs=49.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCCCC---HHHHCCCC---EEEECCCCHHHHH-HHH
Q ss_conf             0799975886789999999862997289999653007-------86006---67747998---9999389837899-999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLRYR---EDLLNAAD---VSILCLPDVASLE-IIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~~~---~~~~~~~D---ivf~a~p~~~s~~-~~~   67 (311)
                      .|||+||- |.-|..|-+-|.++ .+++..+.-+..+       |-...   .+....+|   ++|+++|++..-+ ...
T Consensus         1 MkIGfIGL-G~MG~~mA~nL~~~-G~~V~v~dr~~~~~~~~~~~ga~~~~s~~e~~~~~d~prvI~l~lp~~~~Vd~Vi~   78 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRG-GHEVVGYDRNPEAVEALAAEGATGAASLEELVAKLPAPRVVWLMVPAGEITDSTID   78 (301)
T ss_pred             CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf             97999834-58799999999968-99079976999999999985994329999999707888779998179703899999


Q ss_pred             H---HHHCCCCEEEECCCCCH
Q ss_conf             9---86125848982276303
Q gi|254780294|r   68 L---IKKNGINSRIIDTSTAH   85 (311)
Q Consensus        68 ~---~~~~g~~~~vid~ss~~   85 (311)
                      .   ..+.|  ..+||.|+.+
T Consensus        79 ~l~~~l~~g--~iiID~sts~   97 (301)
T PRK09599         79 ELAPLLEAG--DIVIDGGNSY   97 (301)
T ss_pred             HHHHHCCCC--CEEEECCCCC
T ss_conf             999627899--8887089998


No 221
>KOG2666 consensus
Probab=90.69  E-value=0.34  Score=26.59  Aligned_cols=56  Identities=23%  Similarity=0.268  Sum_probs=41.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC-CCCCC------CC----------------------CHHHHCCC
Q ss_conf             907999758867899999998629-97289999653-00786------00----------------------66774799
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE-ERHNL------RY----------------------REDLLNAA   50 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~-~~ag~------~~----------------------~~~~~~~~   50 (311)
                      |.||+-+|| ||||+--...++-. |.++++.+.-+ .+...      .+                      -+....+.
T Consensus         1 ~~KicCiGA-GYVGGPT~aviAlkCP~i~vtvVD~s~~rInaWNSd~LPIYEPGLdevVk~cRgkNLFFStdiek~i~Ea   79 (481)
T KOG2666           1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA   79 (481)
T ss_pred             CCEEEEECC-CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHC
T ss_conf             935999567-7668830644310389548999866837765016888865687779999983487515515668776542


Q ss_pred             CEEEECC
Q ss_conf             8999938
Q gi|254780294|r   51 DVSILCL   57 (311)
Q Consensus        51 Divf~a~   57 (311)
                      |++|.+.
T Consensus        80 DlvFiSV   86 (481)
T KOG2666          80 DLVFISV   86 (481)
T ss_pred             CEEEEEE
T ss_conf             5699993


No 222
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=90.66  E-value=1.2  Score=23.18  Aligned_cols=84  Identities=14%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             90799975886789999999862997289999653007860066774799899993--8983789999998612584898
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRI   78 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~v   78 (311)
                      |+||-||==-=.+-.-+.+.|++.|.|++...+++-.....+-...-..+|++++-  +|+.-.-++...+++.+..+-|
T Consensus         1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~V   80 (239)
T PRK10430          1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV   80 (239)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf             98799992989999999999851899089999899999999996579998589978999999789999999985899819


Q ss_pred             ECCCCC
Q ss_conf             227630
Q gi|254780294|r   79 IDTSTA   84 (311)
Q Consensus        79 id~ss~   84 (311)
                      |=.|++
T Consensus        81 I~ITa~   86 (239)
T PRK10430         81 IVISSA   86 (239)
T ss_pred             EEEEEC
T ss_conf             999726


No 223
>TIGR01746 Thioester-redct thioester reductase domain; InterPro: IPR010080   This domain includes the C-terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG . The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol ; in myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase. This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. The majority of bacterial sequences containing this domain are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (IPR006163 from INTERPRO). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (from Mycobacterium leprae, Anabaena and from Streptomyces coelicolor) and one protein (from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain.; GO: 0004043 L-aminoadipate-semialdehyde dehydrogenase activity.
Probab=90.53  E-value=0.35  Score=26.55  Aligned_cols=30  Identities=13%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC---CCEEEEEE
Q ss_conf             7999758867899999998629---97289999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR---KDLCLLSI   32 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h---p~~~l~~l   32 (311)
                      +|=+-|||||.|+.|++-|.++   +..+|..|
T Consensus         1 ~vlLTGAtGfLG~~ll~~Ll~~~~s~~~~v~CL   33 (405)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRNDSTEAKVICL   33 (405)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             958733626789999999972048864056877


No 224
>PRK08666 5'-methylthioadenosine phosphorylase; Validated
Probab=90.41  E-value=0.27  Score=27.22  Aligned_cols=84  Identities=19%  Similarity=0.212  Sum_probs=44.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHH-HHHHHHHH
Q ss_conf             90799975886789999999862997289999653007860066774799899993--------8983789-99999861
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASL-EIIQLIKK   71 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~-~~~~~~~~   71 (311)
                      |.||||+|.||+-.-.++   ++.....+..=.++.    ++.--.+++.|++|+.        .||.+-- .-.-.+.+
T Consensus         1 m~kigIIgGSGl~~~~~l---~~~~~~~v~TpyG~~----~~~~g~~~g~~v~fl~RHG~~h~~~p~~inyrAni~alk~   73 (261)
T PRK08666          1 MVRIAIIGGTGVYDPPIL---ENIREETVETPYGEV----KVKIGEYAGEEVAFLARHGKGHSVPPHLINYRANIWALKE   73 (261)
T ss_pred             CCEEEEECCCCCCCCHHC---CCCEEEEEECCCCCC----CEEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             974999888766760014---766078858998886----5599998998999978889998878533760365999997


Q ss_pred             CCCCEEEECCCCCHHHHHHHH
Q ss_conf             258489822763035554311
Q gi|254780294|r   72 NGINSRIIDTSTAHRIAPGWV   92 (311)
Q Consensus        72 ~g~~~~vid~ss~~R~~~~vp   92 (311)
                      .|++.. |--+++=-+.++++
T Consensus        74 LGv~~i-i~tnA~Gsl~~~~~   93 (261)
T PRK08666         74 LGVERI-LATSAVGSLNPNMK   93 (261)
T ss_pred             CCCCEE-EEECCCCCCCCCCC
T ss_conf             599789-98402001555689


No 225
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=90.39  E-value=1.3  Score=23.04  Aligned_cols=141  Identities=15%  Similarity=0.103  Sum_probs=73.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------HHHH---CCCCEEEECCCCHHH-HHHHH
Q ss_conf             079997588678999999986299728999965300786006----------6774---799899993898378-99999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------EDLL---NAADVSILCLPDVAS-LEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------~~~~---~~~Divf~a~p~~~s-~~~~~   67 (311)
                      .|||++|- |.-|..|-+-|.++ -+++..+.-+..+-+++.          ++..   +..+++|+++|++.. .+...
T Consensus         1 MkIGfIGL-G~MG~~mA~nL~~~-G~~V~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~l~~~~vI~~~vp~g~~v~~vi~   78 (298)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLRED-GHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRAIWVMVPAGEVTESVLK   78 (298)
T ss_pred             CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH
T ss_conf             97999834-67689999999977-99489984998999999986995428999999737899889997689455999999


Q ss_pred             HH---HHCCCCEEEECCCCCHHHHH----------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf             98---61258489822763035554----------311002100047765204960772584211331124788888503
Q gi|254780294|r   68 LI---KKNGINSRIIDTSTAHRIAP----------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL  134 (311)
Q Consensus        68 ~~---~~~g~~~~vid~ss~~R~~~----------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~  134 (311)
                      .+   .+.|  ..+||.|..+-.+.          ++.++=-.|.........+..+  =+|+... ..-.+.|+++...
T Consensus        79 ~l~~~L~~g--~iiID~sts~~~~t~~~~~~l~~~gi~flDapVSGG~~GA~~Glsi--MvGG~~~-~~~~~~pil~~ia  153 (298)
T PRK12490         79 DLYPLLSPG--DIVIDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCL--MVGGDKE-IYDRLEPVFDALA  153 (298)
T ss_pred             HHHHHCCCC--CEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEE--ECCCCHH-HHHHHHHHHHHHC
T ss_conf             688526999--8885288789999999999999759903055357887899669868--5189999-9999999999966


Q ss_pred             CCCCCCEEEEEECCCCCCCC
Q ss_conf             45565026765123333561
Q gi|254780294|r  135 LPDRYPITINAVSGYTGGGK  154 (311)
Q Consensus       135 i~~~~~~~~~~~sg~sgaG~  154 (311)
                      -+.  .++   +-|-+|+|.
T Consensus       154 ~~~--~~~---~~G~~GsGh  168 (298)
T PRK12490        154 PEN--GYV---HAGPVGSGH  168 (298)
T ss_pred             CCC--CCC---CCCCCCHHH
T ss_conf             745--857---208987538


No 226
>PRK08328 hypothetical protein; Provisional
Probab=90.36  E-value=1.3  Score=23.02  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC--C----------------------
Q ss_conf             079997588678999999986299728999---------------9653007860--0----------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR--Y----------------------   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~--~----------------------   42 (311)
                      .||.|+|+ |=.|......|+.--.-+|+.               +..++..|+.  .                      
T Consensus        28 s~VlvvG~-GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~  106 (230)
T PRK08328         28 AKVAVVGV-GGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGR  106 (230)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHH
T ss_conf             97899887-87899999999984898689874878751563255403087747710399999999975995057526644


Q ss_pred             -C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCCCHH
Q ss_conf             -6----677479989999389837899999986-1258489822763035554311002100047
Q gi|254780294|r   43 -R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTSTAHRIAPGWVYGFPEMDKS  101 (311)
Q Consensus        43 -~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~  101 (311)
                       +    ++.++++|+|+-|+++-.++.+...+. +.+.  .+|. ++..+++-.+...+|...+.
T Consensus       107 i~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~i--PlI~-g~v~g~~Gqv~~~~p~~~~~  168 (230)
T PRK08328        107 LTEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGI--PLVH-GAVEGMYGQVTTIVPGKTKR  168 (230)
T ss_pred             HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC--CEEE-EEEECCEEEEEEEECCCCCC
T ss_conf             23777986200598999988998999999999998399--7799-99661799999980899998


No 227
>PRK06436 glycerate dehydrogenase; Provisional
Probab=90.34  E-value=1.1  Score=23.39  Aligned_cols=18  Identities=17%  Similarity=0.220  Sum_probs=11.1

Q ss_pred             CCCHHHHHHHHHHHHHHH
Q ss_conf             221013689999999987
Q gi|254780294|r  290 DNLGKGASGAAIQNMDLL  307 (311)
Q Consensus       290 DNL~KGAAgnAVQn~nlm  307 (311)
                      +..++-++..|++|..-.
T Consensus       262 ~e~~~~~~~~a~~Ni~~f  279 (303)
T PRK06436        262 GEIMQPAVALAFENIKNF  279 (303)
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999


No 228
>TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945   Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC).   Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=90.27  E-value=1  Score=23.65  Aligned_cols=107  Identities=21%  Similarity=0.367  Sum_probs=68.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCCC------CCCC----------------HHHHCCCCEE
Q ss_conf             07999758867899999998629------972899996530078------6006----------------6774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERHN------LRYR----------------EDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~ag------~~~~----------------~~~~~~~Div   53 (311)
                      .||+|=||+|.+|=-|+=.|+.=      -.++|++|......+      +++.                ++.|+++|++
T Consensus         4 ~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCAFPlL~~v~~T~~p~eAF~dvD~A   83 (329)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCAFPLLAGVVATTDPEEAFKDVDVA   83 (329)
T ss_pred             EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCEE
T ss_conf             37997374467899998898556104889846888607723311334435535306452235112216868751898757


Q ss_pred             EE--CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf             99--3898378999999861258489822763035554311002100047765204960772584211331124
Q gi|254780294|r   54 IL--CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI  125 (311)
Q Consensus        54 f~--a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la  125 (311)
                      |+  |.|-..-++-...+...|         .-|+-.-..      +|..+.+..+ =-.|.|| |+|.|+++.
T Consensus        84 lLvGa~PRK~GMER~DLL~~Ng---------~IF~~QG~a------Ln~~Ak~~vK-VLVVGNP-aNTNaLIa~  140 (329)
T TIGR01759        84 LLVGAFPRKPGMERRDLLSKNG---------KIFKEQGKA------LNKVAKKDVK-VLVVGNP-ANTNALIAS  140 (329)
T ss_pred             EEECCCCCCCCCCHHHHHHHCC---------HHHHHHHHH------HHHHCCCCCE-EEEECCC-CHHHHHHHH
T ss_conf             7613668958844799987222---------546879999------9986189856-9985298-627999999


No 229
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.26  E-value=1.3  Score=22.97  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=51.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             0799975886789999999862997289999653007--------860-----066774799899993898378999999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLR-----YREDLLNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~   68 (311)
                      .||.|+|. |-.|.-..++|.++ ..++.....+.+.        +-.     ..++.+.++|+++.+-+=.........
T Consensus         7 k~v~V~Gl-G~sG~s~~~~L~~~-G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~~~~   84 (438)
T PRK03806          7 KNVVIIGL-GLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSA   84 (438)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHHCCCCEEEECCCCCCCCHHHHH
T ss_conf             98999945-78889999999978-99699998999900578864588466577796680679999989978998989999


Q ss_pred             HHHCCCC
Q ss_conf             8612584
Q gi|254780294|r   69 IKKNGIN   75 (311)
Q Consensus        69 ~~~~g~~   75 (311)
                      +.++|..
T Consensus        85 a~~~~i~   91 (438)
T PRK03806         85 AADAGVE   91 (438)
T ss_pred             HHHCCCC
T ss_conf             9987994


No 230
>PRK13984 putative oxidoreductase; Provisional
Probab=89.98  E-value=1.1  Score=23.41  Aligned_cols=61  Identities=15%  Similarity=0.075  Sum_probs=42.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C
Q ss_conf             07999758867899999998629972899996530078600--------------------------------------6
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~   43 (311)
                      +||||||| |=.|..--..|... -.+++.+-.....|--+                                      +
T Consensus       284 KKVAVIGs-GPAGLaaA~~Lar~-Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGkDit  361 (604)
T PRK13984        284 KKVAIVGS-GPAGLSAAYFLATM-GYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGKDIS  361 (604)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCC
T ss_conf             98999898-68999999999986-98689974567789723315872228789999999999972989976857798478


Q ss_pred             -HHHHCCCCEEEECCCCHHHHH
Q ss_conf             -677479989999389837899
Q gi|254780294|r   44 -EDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus        44 -~~~~~~~Divf~a~p~~~s~~   64 (311)
                       +++.+++|.||+|.+...++.
T Consensus       362 ~eeL~~~yDAVfLa~Ga~~~r~  383 (604)
T PRK13984        362 LEELREKHDAVFVSTGFTLGRS  383 (604)
T ss_pred             HHHHHHCCCEEEEECCCCCCCC
T ss_conf             9999705899999538887766


No 231
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=89.83  E-value=1.2  Score=23.34  Aligned_cols=62  Identities=15%  Similarity=0.015  Sum_probs=35.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf             079997588678999999986299728999965300786006677479989999389837899999986
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIK   70 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~   70 (311)
                      .||.|+=+.++ +..=++.|.+..  |++.+...+.  .++. +...++|+++.. ...++++...++.
T Consensus         1 mki~~ld~~~~-~~~~~~~l~~~~--e~~~~~~~~~--ee~~-~~i~dadili~~-~~~i~~e~l~~a~   62 (311)
T PRK08410          1 MKIVILDAKTL-GDVDLSVFNEFG--DFQIYDTTSP--EEVI-ERIKDANIIITN-KVVIDKEVLSALP   62 (311)
T ss_pred             CEEEEEECCCC-CCCCHHHHHCCC--CEEEECCCCH--HHHH-HHHCCCCEEEEC-CCCCCHHHHHCCC
T ss_conf             95999937867-722658770577--5899789898--9999-983899499974-8854999993699


No 232
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.57  E-value=1.5  Score=22.63  Aligned_cols=78  Identities=12%  Similarity=0.109  Sum_probs=45.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CC-CCC--------------CHHHHCCCCEEEECCCC
Q ss_conf             079997588678999999986299728999965300-------78-600--------------66774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-------HN-LRY--------------REDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-------ag-~~~--------------~~~~~~~~Divf~a~p~   59 (311)
                      .||+|+|| |.+|.-+--.|.+.- .++++++....       .| ..+              ..+....+|++|.|+=.
T Consensus         3 MkI~IiGa-GAiG~~~a~~L~~ag-~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~D~vivavK~   80 (305)
T PRK05708          3 MTWHILGA-GSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAPEPIHRLLVACKA   80 (305)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECC
T ss_conf             88999882-399999999998489-9739999478999999978998998689557874046576657887789998042


Q ss_pred             HHHHHHHHHHHHC-CCCEEEECC
Q ss_conf             3789999998612-584898227
Q gi|254780294|r   60 VASLEIIQLIKKN-GINSRIIDT   81 (311)
Q Consensus        60 ~~s~~~~~~~~~~-g~~~~vid~   81 (311)
                      --..+.++.+... +.++.|+..
T Consensus        81 ~~~~~a~~~l~~~l~~~t~Iv~l  103 (305)
T PRK05708         81 YDAEPAVASLAHRLAPGAELLLL  103 (305)
T ss_pred             CCHHHHHHHHHHHCCCCCEEEEE
T ss_conf             56899999988644999589994


No 233
>PRK03673 competence damage-inducible protein A; Provisional
Probab=89.54  E-value=1  Score=23.68  Aligned_cols=113  Identities=17%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             CCEEEEECCCCHHHHHHH-------------HHHHCC--CCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC-----CCCH
Q ss_conf             907999758867899999-------------998629--97289999653007860066774799899993-----8983
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIR-------------SRIVQR--KDLCLLSIPCEERHNLRYREDLLNAADVSILC-----LPDV   60 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li-------------~lL~~h--p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a-----~p~~   60 (311)
                      |.|+.|+-    ||-||+             +.|.+.  +......+.-+...=.+.-.......|+++.+     +.++
T Consensus         1 MMkaeIIs----iG~ElL~G~i~dTNa~~la~~L~~~G~~v~~~~tVgD~~~~i~~~l~~a~~r~DlVI~tGGLGPT~DD   76 (396)
T PRK03673          1 MLRVEMLS----TGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD   76 (396)
T ss_pred             CCEEEEEE----ECCCHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCH
T ss_conf             92699999----85410057433441999999999779818899992898999999999996149999993884899833


Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HHCCCCCCHHHHHHCCCCEEEECCCCCCC
Q ss_conf             7899999986125848982276303555431---10021000477652049607725842113
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGW---VYGFPEMDKSQKEKIRSARYITNPGCYAT  120 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v---pl~vPEvN~~~~~~~~~~~iIanPnC~~t  120 (311)
                      .+++.+.++....   .+.|-...-++..-+   -..+|+-|..+-...+++.++.||.-++.
T Consensus        77 lT~eavA~~~g~~---L~~~~~~l~~i~~~f~~rgr~m~~~N~kQA~lPega~vl~N~~GTAp  136 (396)
T PRK03673         77 LSALAAATAKGEG---LVLHEAWLAEMERYFHERGRVMAPSNRKQAELPASAEFIDNPVGTAC  136 (396)
T ss_pred             HHHHHHHHHHCCC---CEEHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCC
T ss_conf             5799999985688---27619999999999997299998456752136799888545886576


No 234
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.37  E-value=1.6  Score=22.54  Aligned_cols=69  Identities=22%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC---------------HHHHCCCCEEEECCCCH
Q ss_conf             079997588678999999986299728999965300------786006---------------67747998999938983
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR---------------EDLLNAADVSILCLPDV   60 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~---------------~~~~~~~Divf~a~p~~   60 (311)
                      .||+|+|| |.+|.-+--.|.+.. -++.++.-+++      .|..+.               .+....+|++|.++=+-
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~   78 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY   78 (307)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC
T ss_conf             95999878-789999999998589-9579981089999998789799816885224432356733367888899980422


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             789999998612
Q gi|254780294|r   61 ASLEIIQLIKKN   72 (311)
Q Consensus        61 ~s~~~~~~~~~~   72 (311)
                      ...+..+.+...
T Consensus        79 q~~~al~~l~~~   90 (307)
T COG1893          79 QLEEALPSLAPL   90 (307)
T ss_pred             CHHHHHHHHHHH
T ss_conf             389999998730


No 235
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=89.24  E-value=1.6  Score=22.48  Aligned_cols=65  Identities=22%  Similarity=0.286  Sum_probs=40.2

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC----------------HHHHCCCCEEEECCCCHH
Q ss_conf             9997588678999999986299728999965300------786006----------------677479989999389837
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR----------------EDLLNAADVSILCLPDVA   61 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~----------------~~~~~~~Divf~a~p~~~   61 (311)
                      |+|+|| |.+|.-+-..|.+. ..++.+++..++      .|.++.                ......+|++|.|+-.-.
T Consensus         1 I~IiGa-GaiG~~~a~~L~~a-g~~V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   78 (150)
T pfam02558         1 IAILGA-GAVGSLYGARLARA-GHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAYQ   78 (150)
T ss_pred             CEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCCC
T ss_conf             999966-89999999999977-9928999756367887749769994798389807410386576588679999722458


Q ss_pred             HHHHHHHHH
Q ss_conf             899999986
Q gi|254780294|r   62 SLEIIQLIK   70 (311)
Q Consensus        62 s~~~~~~~~   70 (311)
                      ..+..+.+.
T Consensus        79 ~~~al~~l~   87 (150)
T pfam02558        79 TAEALEDLA   87 (150)
T ss_pred             HHHHHHHHH
T ss_conf             899999988


No 236
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p; InterPro: IPR006285   This is a family of eukaryotic proteins found in animals, plants, and yeasts that includes Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. .
Probab=89.21  E-value=1.6  Score=22.47  Aligned_cols=128  Identities=15%  Similarity=0.183  Sum_probs=78.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-C-------------------CCC---------------------
Q ss_conf             07999758867899999998629972899996530-0-------------------786---------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-R-------------------HNL---------------------   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~-------------------ag~---------------------   40 (311)
                      .||-|+|| |.-|-..-|.|-.-=..+|+++.-.. +                   ++|                     
T Consensus       349 ~KvLlLGA-GTLGc~vaR~L~GwGvRhItFvDngkVs~sNPVRQsL~nFeDcl~gG~~KAetA~kalk~IFP~i~~~g~~  427 (689)
T TIGR01381       349 VKVLLLGA-GTLGCQVARVLLGWGVRHITFVDNGKVSYSNPVRQSLYNFEDCLEGGEGKAETAAKALKRIFPAIEASGYR  427 (689)
T ss_pred             CCEEEECC-CHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCHHHHCCCEE
T ss_conf             23123426-33456898887426621578864574540277468764336451378623899999998625002015317


Q ss_pred             --------CCC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHH------H-----
Q ss_conf             --------006--------------6774799899993898378999999861258489822763035------5-----
Q gi|254780294|r   41 --------RYR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHR------I-----   87 (311)
Q Consensus        41 --------~~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R------~-----   87 (311)
                              .++              ....++.|+||++++.-.|+ |.|....+..++.-|..+--|.      +     
T Consensus       428 l~vPMpGHpi~~~~~~~~~~D~~rL~~Lik~HDvVFLl~DsRE~R-WLPtvLc~~~~KIaI~aAlGFDsY~v~RHG~gs~  506 (689)
T TIGR01381       428 LEVPMPGHPIDEKDVDELLEDIKRLEELIKEHDVVFLLLDSREAR-WLPTVLCARFDKIAISAALGFDSYLVMRHGAGSR  506 (689)
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCC
T ss_conf             861688888872212668999999999865005355301365002-2378997537944888742336057776278886


Q ss_pred             ----------H-HHHHH-----------CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             ----------5-43110-----------021000477652049607725842113311247888885
Q gi|254780294|r   88 ----------A-PGWVY-----------GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKA  132 (311)
Q Consensus        88 ----------~-~~vpl-----------~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~  132 (311)
                                | ..+|+           +-|. |.--=..+..+.-||-||...++..+|.--|...
T Consensus       507 ~~~~~d~~~~di~k~~~~rLgCYFCnDv~AP~-dSttDRTLDQ~CTVtRPG~a~iAs~lAvELlvsv  572 (689)
T TIGR01381       507 SEEVSDVEESDISKVNYSRLGCYFCNDVVAPK-DSTTDRTLDQQCTVTRPGVALIASALAVELLVSV  572 (689)
T ss_pred             CCCHHHHHHCCCCCCCCCCCCEEECCCEECCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             53023354423222665434313036503687-8863554445543346646788999999998766


No 237
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=89.14  E-value=0.55  Score=25.33  Aligned_cols=37  Identities=14%  Similarity=0.251  Sum_probs=29.9

Q ss_pred             CCE--EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             907--999758867-8999999986299728999965300
Q gi|254780294|r    1 MYK--IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         1 M~k--VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |.|  |||=||+|. -|.+|++.|.+.+.+|++++.|+.-
T Consensus         1 MkrIvvgITGASGa~ya~rll~~L~~~~~~ev~lv~S~~A   40 (187)
T PRK06029          1 MKRLIVGISGASGAIYGVRLLQVLRDVEEVETHLVISQAA   40 (187)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECHHH
T ss_conf             9739999852888999999999986428956999988689


No 238
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.88  E-value=1.6  Score=22.54  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--ECCCC--CCC---CCCHHHHCCCCEEEECCCC
Q ss_conf             0799975886789999999862997289999--65300--786---0066774799899993898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--PCEER--HNL---RYREDLLNAADVSILCLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--~s~~~--ag~---~~~~~~~~~~Divf~a~p~   59 (311)
                      ++|+|+|. -.--.++++.|.+. ..++..+  ...+.  .|.   +..++.++++|++++=.|.
T Consensus         3 ~~iaviGG-D~Rq~~l~~~L~~~-g~~V~~~gf~~~~~~~~~~~~~~~~~~~~~~~d~iIlPvpg   65 (296)
T PRK08306          3 MHIAVIGG-DARQLELIRKLVEL-GAKVSLVGFDQLDHGFTGVAKCSSLEEALSDVDVIILPVPG   65 (296)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCEEEECCHHHHHHCCCEEEECCCC
T ss_conf             48999787-58999999999977-99799983576555667617734678887239999978832


No 239
>PRK13243 glyoxylate reductase; Reviewed
Probab=88.72  E-value=1.2  Score=23.22  Aligned_cols=72  Identities=11%  Similarity=0.081  Sum_probs=44.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             79997588678999999986299728999965300786006677479989999389837899999986125848982276
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                      ||-|.+   -+-.+-+++|.+|  +++..........+.--.+...++|.++......+.+++..++.    +.++|...
T Consensus         4 Kvlvt~---~i~~~~~~~L~~~--~~v~~~~~~~~~~~~~l~~~i~~~d~li~~~~~~i~~~~l~~ap----~LK~I~~~   74 (333)
T PRK13243          4 RVFITR---EIPENGIEMLEEH--FEVEVWEDEREIPREVLLEKVKDVDALVTMLSERIDAEVFEAAP----RLRIVANY   74 (333)
T ss_pred             EEEEEC---CCCHHHHHHHHHC--CCEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC----CCEEEEEC
T ss_conf             899969---8899999999717--95999269999999999998679829998588858899994699----98099885


Q ss_pred             C
Q ss_conf             3
Q gi|254780294|r   83 T   83 (311)
Q Consensus        83 s   83 (311)
                      +
T Consensus        75 g   75 (333)
T PRK13243         75 A   75 (333)
T ss_pred             C
T ss_conf             7


No 240
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.66  E-value=1.4  Score=22.79  Aligned_cols=61  Identities=13%  Similarity=0.134  Sum_probs=42.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C
Q ss_conf             07999758867899999998629972899996530078600--------------------------------------6
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~   43 (311)
                      .||||||+ |=.|..--..|... -.+++.+-.....|--+                                      +
T Consensus       311 kKVAVIGs-GPAGLaaA~~Lar~-G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkDit  388 (639)
T PRK12809        311 EKVAVIGA-GPAGLGCADILARA-GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT  388 (639)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCCCC
T ss_conf             98999897-58999999999975-99069993688889868535874527778999999999864988991967798688


Q ss_pred             -HHHHCCCCEEEECCCCHHHHH
Q ss_conf             -677479989999389837899
Q gi|254780294|r   44 -EDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus        44 -~~~~~~~Divf~a~p~~~s~~   64 (311)
                       +++.+++|.||++++...++.
T Consensus       389 ~~eL~~~yDAVflg~Ga~~~~~  410 (639)
T PRK12809        389 FSDLTSEYDAVFIGVGTYGMMR  410 (639)
T ss_pred             HHHHHHHCCEEEEEECCCCCCC
T ss_conf             9999731798999736788854


No 241
>PRK07201 short chain dehydrogenase; Provisional
Probab=88.62  E-value=0.81  Score=24.27  Aligned_cols=35  Identities=20%  Similarity=0.402  Sum_probs=29.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             79997588678999999986299728999965300
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |+-+-||||+.|..|++.|.+++..++..+--.++
T Consensus         2 nyflTGaTGFLG~~LL~~LL~~~~a~V~cLVR~~s   36 (663)
T PRK07201          2 RYFVTGGTGFIGRRLVSRLLDRPGARVHVLVRRQS   36 (663)
T ss_pred             CEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf             36540684288999999998489998999978774


No 242
>PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.49  E-value=1.8  Score=22.16  Aligned_cols=86  Identities=10%  Similarity=0.146  Sum_probs=56.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CCC----------------HHHH
Q ss_conf             9079997588678999999986299728999965300786-----------------006----------------6774
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RYR----------------EDLL   47 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~~----------------~~~~   47 (311)
                      ..||||||| |.-|+-+-..+..+ -++++++..+..+-.                 ++.                -+.+
T Consensus         3 i~~VaViGa-GtMG~gIA~~~a~a-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~l   80 (503)
T PRK08268          3 IATVAVIGA-GAMGAGIAQVAAQA-GHTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALADL   80 (503)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHHH
T ss_conf             678999796-88999999999938-9908999799899999999999999999976999988999998474741778897


Q ss_pred             CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH
Q ss_conf             79989999389837899--9999861-25848982276303555
Q gi|254780294|r   48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA   88 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~   88 (311)
                      .++|+|+=|.|....-+  ....+-+ ...++.+-+|+|....+
T Consensus        81 ~~aDlVIEAV~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~it  124 (503)
T PRK08268         81 ADCDLVVEAIVERLDVKQALFAQLEAIVSDDCILATNTSSLSIT  124 (503)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH
T ss_conf             57999999360678999999999985479885798417767799


No 243
>PRK10637 cysG siroheme synthase; Provisional
Probab=88.48  E-value=1.8  Score=22.16  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------C------CCCCCHHHHCCCCEEEECCCCH-HHHHHH
Q ss_conf             079997588678999999986299728999965300--------7------8600667747998999938983-789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------H------NLRYREDLLNAADVSILCLPDV-ASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------a------g~~~~~~~~~~~Divf~a~p~~-~s~~~~   66 (311)
                      .+|-|||+ |-|+.+=+++|.+.. .+++.++-+-.        .      .+.+.+.++.++++||.|+++. +.+...
T Consensus        13 k~vLVVGG-G~vA~rK~~~Ll~ag-A~VtViap~~~~~l~~l~~~g~i~~~~r~f~~~dL~g~~LViaATdd~~vn~~i~   90 (457)
T PRK10637         13 RDCLIVGG-GDVAERKARLLLDAG-ARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRVS   90 (457)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCHHHHHHHH
T ss_conf             86999899-899999999998789-8799989989989999986698289967899688389519999069999999999


Q ss_pred             HHHHHCCCCEEEECC
Q ss_conf             998612584898227
Q gi|254780294|r   67 QLIKKNGINSRIIDT   81 (311)
Q Consensus        67 ~~~~~~g~~~~vid~   81 (311)
                      ..+.+.|.-+-|.|.
T Consensus        91 ~~a~~~~ilVNvvD~  105 (457)
T PRK10637         91 EAAEARRIFCNVVDA  105 (457)
T ss_pred             HHHHHCCCEEEECCC
T ss_conf             999982986884588


No 244
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=88.38  E-value=1.6  Score=22.39  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=27.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      +||||||+ |=.|..--..|... -.+++.+-.....|-
T Consensus       328 KkVAIIGs-GPAGLsaA~~Lar~-G~~VTVFE~~~~~GG  364 (654)
T PRK12769        328 KRVAIIGA-GPAGLACADVLTRN-GVAVTVYDRHPEIGG  364 (654)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCC
T ss_conf             98999897-78999999999976-975799525777886


No 245
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=88.16  E-value=1.6  Score=22.41  Aligned_cols=27  Identities=7%  Similarity=0.079  Sum_probs=12.8

Q ss_pred             CCCCCHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             860066774799899993898378999
Q gi|254780294|r   39 NLRYREDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus        39 g~~~~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      |+.+..+...++|+.+-=.-..+.++.
T Consensus        27 gr~i~~~~l~daD~LiVRS~T~V~~~L   53 (379)
T PRK00257         27 GRDFDRAAVRDADALLVRSVTRVDRAL   53 (379)
T ss_pred             CCCCCHHHHCCCCEEEEECCCCCCHHH
T ss_conf             997998890778899995687448999


No 246
>pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina.
Probab=88.06  E-value=1.3  Score=23.05  Aligned_cols=14  Identities=14%  Similarity=0.223  Sum_probs=6.1

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             13689999999987
Q gi|254780294|r  294 KGASGAAIQNMDLL  307 (311)
Q Consensus       294 KGAAgnAVQn~nlm  307 (311)
                      -|-|.|=+-.+.+.
T Consensus       292 ~G~a~~Dla~a~~v  305 (312)
T pfam02423       292 TGFAVEDVAAARLV  305 (312)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             88699999999999


No 247
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=87.43  E-value=2.1  Score=21.76  Aligned_cols=78  Identities=14%  Similarity=0.020  Sum_probs=52.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861258489822
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      |.||.+-+..-+==.-+.+. .++..+|+......-+  .. .-+..+++|.+..-.-..+.++...++.+.|  .++|.
T Consensus         1 m~Ki~~~~~~~~e~~~~~~~-~~~~~~e~~~~~~~~~--~~-~~~~~~~~d~v~~~~~~~i~~evl~~l~~~~--LK~I~   74 (330)
T PRK12480          1 MTKIMFFGTRDYEKEMALNW-GKKNNVEVTTSKELLS--SA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYG--IKQIA   74 (330)
T ss_pred             CCEEEEEECCHHHHHHHHHH-HHHCCEEEEEECCCCC--HH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHCC--CEEEE
T ss_conf             96699983768669999998-8774906999569899--89-9998479998999607978999999655679--75999


Q ss_pred             CCCC
Q ss_conf             7630
Q gi|254780294|r   81 TSTA   84 (311)
Q Consensus        81 ~ss~   84 (311)
                      ..+.
T Consensus        75 ~~gv   78 (330)
T PRK12480         75 QRTA   78 (330)
T ss_pred             ECCE
T ss_conf             8772


No 248
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.19  E-value=1.7  Score=22.37  Aligned_cols=64  Identities=8%  Similarity=0.096  Sum_probs=45.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCCCC----C--C----------------CHHHHCCCCEE
Q ss_conf             07999758867899999998629------9728999965300786----0--0----------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERHNL----R--Y----------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~ag~----~--~----------------~~~~~~~~Div   53 (311)
                      ++|+|.||+|.+-=.|+-+|.+-      ..+.|+++.......+    .  +                -++.|.++|++
T Consensus       124 l~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a  203 (452)
T cd05295         124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVI  203 (452)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHCCCCCCCEEEECCHHHHHCCCCEE
T ss_conf             46999468447689999997376734898717999547740778863633567653440017106767999985579889


Q ss_pred             EE--CCCCHHHHHH
Q ss_conf             99--3898378999
Q gi|254780294|r   54 IL--CLPDVASLEI   65 (311)
Q Consensus        54 f~--a~p~~~s~~~   65 (311)
                      |+  +-|-...++-
T Consensus       204 ilvga~pr~~gmer  217 (452)
T cd05295         204 VLLDDFLIKEGEDL  217 (452)
T ss_pred             EEECCCCCCCCCCH
T ss_conf             99588478888718


No 249
>PRK06847 hypothetical protein; Provisional
Probab=87.06  E-value=1.2  Score=23.33  Aligned_cols=32  Identities=16%  Similarity=0.285  Sum_probs=26.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9079997588678999999986299728999965
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |.||.|||| |.+|..+=-.|.++ .++++.+-.
T Consensus         4 ~kkV~IVGa-G~aGL~lA~~L~~~-Gi~v~V~E~   35 (375)
T PRK06847          4 VKKVLIVGG-GIGGMSAAIALRKA-GISVDLVEI   35 (375)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             987999996-68999999999967-999999908


No 250
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.88  E-value=1.3  Score=23.06  Aligned_cols=43  Identities=16%  Similarity=0.364  Sum_probs=29.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEE--EEEEECCCC--CCCCCCH
Q ss_conf             9079997588678999999986299728--999965300--7860066
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC--LLSIPCEER--HNLRYRE   44 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~--l~~l~s~~~--ag~~~~~   44 (311)
                      |++|||||. |+.|-.+..-|.++|..+  +..+--+..  .|..|+.
T Consensus         1 ~~~VAIIGg-G~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~   47 (474)
T COG4529           1 MFKVAIIGG-GFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYST   47 (474)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf             951899788-65799999999847887775678535554578755788


No 251
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=86.81  E-value=1.4  Score=22.73  Aligned_cols=15  Identities=13%  Similarity=0.186  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             136899999999872
Q gi|254780294|r  294 KGASGAAIQNMDLLL  308 (311)
Q Consensus       294 KGAAgnAVQn~nlm~  308 (311)
                      -|-|.+=+..+++++
T Consensus       301 vG~aieD~a~a~~vy  315 (330)
T COG2423         301 VGLALEDVAAAKLVY  315 (330)
T ss_pred             CCCCHHHHHHHHHHH
T ss_conf             783089999999999


No 252
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=86.73  E-value=2.3  Score=21.52  Aligned_cols=82  Identities=13%  Similarity=0.133  Sum_probs=48.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC--------------CCCCCCC------------------------CC-
Q ss_conf             79997588678999999986299728999965--------------3007860------------------------06-
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC--------------EERHNLR------------------------YR-   43 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s--------------~~~ag~~------------------------~~-   43 (311)
                      ||+|+|+ |-.|......|..-=.-+|+++..              .+..|+.                        +. 
T Consensus         1 kV~IvG~-GGLG~~~a~~La~aGvg~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i~~~~~~l~~   79 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE   79 (174)
T ss_pred             CEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCH
T ss_conf             9899876-788999999999818973999989946664430132477747974999999999987979889999144499


Q ss_pred             ---HHHHCCCCEEEECCCCHHHHHHH-HHHHH-CCCCEEEECCCCCHHHH
Q ss_conf             ---67747998999938983789999-99861-25848982276303555
Q gi|254780294|r   44 ---EDLLNAADVSILCLPDVASLEII-QLIKK-NGINSRIIDTSTAHRIA   88 (311)
Q Consensus        44 ---~~~~~~~Divf~a~p~~~s~~~~-~~~~~-~g~~~~vid~ss~~R~~   88 (311)
                         ++.++++|+++=|+++-.++.+. ..+.. .+  ..++..| ..++.
T Consensus        80 ~n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~~~~--~plv~as-~~~~~  126 (174)
T cd01487          80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCAS-GMAGF  126 (174)
T ss_pred             HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEE-EECCC
T ss_conf             99999983799999999998999999999999879--9599997-45108


No 253
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=86.49  E-value=2.3  Score=21.44  Aligned_cols=84  Identities=13%  Similarity=0.154  Sum_probs=54.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCC-CCEE
Q ss_conf             90799975886789999999862997289999653007860066774799899993--89837899999986125-8489
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNG-INSR   77 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g-~~~~   77 (311)
                      |+||+|+=---..-+.|.++|+++|.+++..-+++..  ..+....-...|++|+-  +|.--..+.+..+.... ..+.
T Consensus         1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~--eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~~~~~iI   78 (239)
T PRK11697          1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAI--EALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPEHMPYIV   78 (239)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHH--HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEE
T ss_conf             9499999699999999999997587989999989999--99999985399999983998695999999983733498699


Q ss_pred             EECCCCCHH
Q ss_conf             822763035
Q gi|254780294|r   78 IIDTSTAHR   86 (311)
Q Consensus        78 vid~ss~~R   86 (311)
                      .+..+..|-
T Consensus        79 FvT~~~e~a   87 (239)
T PRK11697         79 FVTAFDEYA   87 (239)
T ss_pred             EEECCHHHH
T ss_conf             995868999


No 254
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.25  E-value=2.4  Score=21.36  Aligned_cols=124  Identities=15%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC---C---------------------
Q ss_conf             07999758867899999998629972899---------------99653007860---0---------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR---Y---------------------   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~---~---------------------   42 (311)
                      .+|.|||| |-.|......|..--.-+|.               .+..++..|+.   .                     
T Consensus        25 a~VlVvGa-GGLGs~~a~~La~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~  103 (339)
T PRK07688         25 KHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ  103 (339)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf             97899877-77779999999984898299980999246678865065621332263779999999983499860587600


Q ss_pred             --C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             --6----6774799899993898378999999861258489822763035554311002100047765204960772584
Q gi|254780294|r   43 --R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        43 --~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                        .    ++.++++|+++=|+++-.++-+...+.-+-. +.+|. +++.+++..+--.+|.-.+-.+-..+... ....+
T Consensus       104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~-~PlV~-ga~~g~~G~~~~~~p~~~pC~rCl~p~~p-~~~~t  180 (339)
T PRK07688        104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYS-IPWIY-GACVGSYGLSYTIIPGKTPCLSCLLQSIP-LGGAT  180 (339)
T ss_pred             CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EEEECCEEEEEECCCCCCCCCCCCCCCCC-CCCCC
T ss_conf             39989999998518899987889999999999999959-99899-98844688999538999970541689999-88998


Q ss_pred             CCCCCCHHHHHHH
Q ss_conf             2113311247888
Q gi|254780294|r  117 CYATGAIAILRPL  129 (311)
Q Consensus       117 C~~t~~~laL~PL  129 (311)
                      |.+...+-++..+
T Consensus       181 C~~~GVlgp~vgi  193 (339)
T PRK07688        181 CDTAGIISPAVQL  193 (339)
T ss_pred             CCCCCCCCCHHHH
T ss_conf             4236636450789


No 255
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=86.25  E-value=2.4  Score=21.36  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=26.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      +||||||| |=.|..--..|... -.+++.+-.....|-
T Consensus       144 kkVAVIGs-GPAGLsaA~~Lar~-G~~VtVfE~~~~~GG  180 (472)
T PRK12810        144 KKVAVVGS-GPAGLAAADQLARA-GHKVTVFERDDRIGG  180 (472)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCC
T ss_conf             98999897-78999999999866-975899725777775


No 256
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=86.25  E-value=1.9  Score=22.01  Aligned_cols=16  Identities=19%  Similarity=0.329  Sum_probs=10.9

Q ss_pred             ECCCCCCCCCCCHHCC
Q ss_conf             1233335610000001
Q gi|254780294|r  146 VSGYTGGGKKLISRME  161 (311)
Q Consensus       146 ~sg~sgaG~~~~~~~~  161 (311)
                      +-|+||++++..-.+.
T Consensus       127 IlGaGGaarai~~al~  142 (275)
T PRK00258        127 LLGAGGAARAVILPLL  142 (275)
T ss_pred             EECCCCHHHHHHHHHH
T ss_conf             9888710799999999


No 257
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.23  E-value=2.4  Score=21.36  Aligned_cols=82  Identities=11%  Similarity=0.201  Sum_probs=52.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCC-----CHHHHCCCCEEEECCCCHHHHH
Q ss_conf             079997588678999999986299728999965300------------78600-----6677479989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRY-----REDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~-----~~~~~~~~Divf~a~p~~~s~~   64 (311)
                      +||+|+|. |..|....++|.++ ..++........            .|.++     .+..+.++|+++.+-+=.....
T Consensus        15 k~v~V~Gl-G~sG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p   92 (481)
T PRK01438         15 LRVVVAGL-GVSGFPAADALHEL-GASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPTHP   92 (481)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCCCH
T ss_conf             98999957-58899999999967-99899997998744868999888549889968875666248999998997899899


Q ss_pred             HHHHHHHCCCCEEEE-CCCCCHHH
Q ss_conf             999986125848982-27630355
Q gi|254780294|r   65 IIQLIKKNGINSRII-DTSTAHRI   87 (311)
Q Consensus        65 ~~~~~~~~g~~~~vi-d~ss~~R~   87 (311)
                      ....+.++|..  |+ |.--+||+
T Consensus        93 ~~~~a~~~gi~--i~~eiel~~~~  114 (481)
T PRK01438         93 LLAAAAEAGIP--VWGDVELAWRL  114 (481)
T ss_pred             HHHHHHHCCCC--EECHHHHHHHH
T ss_conf             99999986993--86189999987


No 258
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=86.12  E-value=2.1  Score=21.78  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=40.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C
Q ss_conf             07999758867899999998629972899996530078600--------------------------------------6
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~   43 (311)
                      +||||||| |=.|..--..|... -.+++.+-.....|--+                                      +
T Consensus       194 KkVAIIGa-GPAGLsaAy~L~~~-Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~dit  271 (652)
T PRK12814        194 KKVAIIGA-GPAGLTAAYYLLRK-GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC
T ss_conf             97999683-78999999999977-99069981588889867644863338999999999999971985886679477477


Q ss_pred             -HHHHCCCCEEEECCCCHHHHH
Q ss_conf             -677479989999389837899
Q gi|254780294|r   44 -EDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus        44 -~~~~~~~Divf~a~p~~~s~~   64 (311)
                       ++..+++|.||+|.+...++.
T Consensus       272 l~~L~~~yDAVflaiGa~~~r~  293 (652)
T PRK12814        272 LEELQKEFDAVLLAVGAQKASK  293 (652)
T ss_pred             HHHHHHHCCEEEEEECCCCCCC
T ss_conf             9999865899999755787744


No 259
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=86.03  E-value=1.8  Score=22.10  Aligned_cols=59  Identities=19%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---------------CHHHHCCCCEEEECCCCHH
Q ss_conf             07999758867899999998629972899996530078600---------------6677479989999389837
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY---------------REDLLNAADVSILCLPDVA   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~---------------~~~~~~~~Divf~a~p~~~   61 (311)
                      .+|.|+|+ |=+++..+.-|.+...-+|+.+..+.....++               ......++|+++.|+|-+.
T Consensus        20 k~vlIlGa-GGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~tp~G~   93 (155)
T cd01065          20 KKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM   93 (155)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCEEEECCCCCC
T ss_conf             99999867-589999999999719982288608999999999985013664010453443156887987677877


No 260
>pfam07993 NAD_binding_4 Male sterility protein. This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included.
Probab=85.96  E-value=0.99  Score=23.75  Aligned_cols=30  Identities=10%  Similarity=0.304  Sum_probs=23.6

Q ss_pred             EECCCCHHHHHHHHHHHCC-CCEEEEEEECC
Q ss_conf             9758867899999998629-97289999653
Q gi|254780294|r    6 IDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE   35 (311)
Q Consensus         6 IvGATG~vG~~li~lL~~h-p~~~l~~l~s~   35 (311)
                      |=||||++|..|++.|.+. +..++..|.-.
T Consensus         1 vTGaTGFlG~~ll~~Ll~~~~~~~V~~LvR~   31 (245)
T pfam07993         1 LTGATGFLGKVLLEKLLRSCPEVKIYCLVRA   31 (245)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf             9384359999999999957999789999678


No 261
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=85.68  E-value=2.6  Score=21.18  Aligned_cols=101  Identities=19%  Similarity=0.171  Sum_probs=55.7

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC----------------CCCCCCH-----------HHHCCCCEEEEC
Q ss_conf             9997588678999999986299728999965300----------------7860066-----------774799899993
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER----------------HNLRYRE-----------DLLNAADVSILC   56 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~----------------ag~~~~~-----------~~~~~~Divf~a   56 (311)
                      ++.+|  |+.|+.+.+.|.+.=..+...+..+.+                .|-.+.+           +.+.+.|+++++
T Consensus        56 ~g~~G--g~~G~~i~~~L~~~i~~~~v~i~g~tR~~i~i~~~~~~t~i~~~Gp~i~~~~~~~ll~~~~~~~~~~d~vvis  133 (309)
T PRK13508         56 TGFIG--GELGQFIAEHLDDSIKHAFYKIKGETRNCIAILHEGQQTEILEKGPEIDVQEADGFLHHFKQLLEKVEVVAIS  133 (309)
T ss_pred             EEECC--CCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             99638--9747999999986997469985799725799994796799956799999999999999999870559999996


Q ss_pred             --CCCHHHHH----HHHHHHHCCCCEEEECCCCCHHHHHH----HHHCCCCCCHHHHHHCCC
Q ss_conf             --89837899----99998612584898227630355543----110021000477652049
Q gi|254780294|r   57 --LPDVASLE----IIQLIKKNGINSRIIDTSTAHRIAPG----WVYGFPEMDKSQKEKIRS  108 (311)
Q Consensus        57 --~p~~~s~~----~~~~~~~~g~~~~vid~ss~~R~~~~----vpl~vPEvN~~~~~~~~~  108 (311)
                        +|.++..+    ++..+.+.|. .+++|.|++.-...-    -|.++= -|.+.++.+-+
T Consensus       134 GSlP~g~~~~~y~~li~~~~~~g~-~vilD~sg~~L~~~l~~~~~P~lIK-PN~~El~~l~G  193 (309)
T PRK13508        134 GSLPAGLPQDYYAQLIELANNKGK-KVVLDCSGAALQAVLKSPYKPTVIK-PNIEELSQLLG  193 (309)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHCCCCCCEEC-CCHHHHHHHHC
T ss_conf             888999985999999999985599-8999897699999984657772774-59899999839


No 262
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097   This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified  which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=85.60  E-value=2.5  Score=21.29  Aligned_cols=26  Identities=15%  Similarity=0.254  Sum_probs=21.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-CCEE
Q ss_conf             7999758867899999998629-9728
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-KDLC   28 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-p~~~   28 (311)
                      |||||||.|=+||=|==||-.- |+..
T Consensus         1 KVAVLGA~GGIGQpLSLLLK~~Lp~~s   27 (379)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQLPQVS   27 (379)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEE
T ss_conf             968985586421468999985176457


No 263
>KOG1431 consensus
Probab=85.60  E-value=1.5  Score=22.72  Aligned_cols=35  Identities=23%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-C-CEEEEEEECC
Q ss_conf             907999758867899999998629-9-7289999653
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-K-DLCLLSIPCE   35 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p-~~~l~~l~s~   35 (311)
                      |.||-+-|.||+||..+.+.+++- + .-+..+..|+
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk   37 (315)
T KOG1431           1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK   37 (315)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             9559993687417899999998538887656995155


No 264
>pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function.
Probab=85.54  E-value=2.6  Score=21.14  Aligned_cols=128  Identities=14%  Similarity=0.120  Sum_probs=69.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-----------------------------------HH
Q ss_conf             9079997588678999999986299728999965300786006-----------------------------------67
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-----------------------------------ED   45 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-----------------------------------~~   45 (311)
                      |.||-|+|. |-|+-.|--.|..|-.-.+-...-.+-.++++-                                   ++
T Consensus         1 ~~~vLi~Gt-GPvaIQLAv~~~~~~~~~vgi~~R~S~rs~~f~e~l~~~~~~~~~~vqn~~h~~~~G~~~id~~~~~~~~   79 (429)
T pfam10100         1 MSKVLILGT-GPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEALARTDTLFLVGTQNEQHQQLEGKCTIDCFIKDYAT   79 (429)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEHHHHHCCHHH
T ss_conf             973699637-7799999999985237455453275355799999997377679861022456764471562454137988


Q ss_pred             HHCCCCEEEECCCCHHHHHH---------------------------HHH-HHHCCCCEEEECCCCCHH---HHH-HHHH
Q ss_conf             74799899993898378999---------------------------999-861258489822763035---554-3110
Q gi|254780294|r   46 LLNAADVSILCLPDVASLEI---------------------------IQL-IKKNGINSRIIDTSTAHR---IAP-GWVY   93 (311)
Q Consensus        46 ~~~~~Divf~a~p~~~s~~~---------------------------~~~-~~~~g~~~~vid~ss~~R---~~~-~vpl   93 (311)
                      ...+-|.+++|.|.+.=...                           +.. +.+.|.++-||+.|+.|-   +-+ .-|+
T Consensus        80 i~g~WdtlILavtaDaY~~VL~qi~~~~L~~vk~iILvSPt~GS~~lv~~~l~~~~~~~eVISfStY~gdTr~~d~~~~~  159 (429)
T pfam10100        80 IVGDWDTLILAVTADAYYDVLQQIPWETLKRVKCVILISPTFGSNLLVQNFLNALNKDAEVISFSTYYGDTRWIDDEQPN  159 (429)
T ss_pred             HCCCCCEEEEEEEHHHHHHHHHCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCC
T ss_conf             51513379999521878999970799887047779997666440799999998559981699853003643100678873


Q ss_pred             CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             0210004776520496077258421133112478888850345
Q gi|254780294|r   94 GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLP  136 (311)
Q Consensus        94 ~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~  136 (311)
                      -|      .-...++.-++++++|.++ .+.-|.-+++..+|.
T Consensus       160 ~v------lTtavKkkiYlgSt~~~S~-~~~~l~~~~~~~~I~  195 (429)
T pfam10100       160 RV------LTTAVKKKLYLGSTHSGSA-ELSRLCAVFAQLGIE  195 (429)
T ss_pred             HH------HHHHHHCEEEECCCCCCCH-HHHHHHHHHHHCCCE
T ss_conf             57------8876422078547999967-899999999875930


No 265
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=85.42  E-value=2.6  Score=21.11  Aligned_cols=80  Identities=18%  Similarity=0.254  Sum_probs=48.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH---HHHHHHHHHHCCCCEE
Q ss_conf             07999758867899999998629-9728999965300786006677479989999389837---8999999861258489
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA---SLEIIQLIKKNGINSR   77 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~---s~~~~~~~~~~g~~~~   77 (311)
                      +||+|||| |..|...=-.|.++ |..+++.+=++...|-++......+  +.|=.-|+..   .......+.+.|..-.
T Consensus         1 K~V~VIGa-GiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~t~~~~g--~~~e~Gp~~~~~~~~~~~~l~~~lGL~~~   77 (452)
T PRK11883          1 KRVAIIGG-GISGLTAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--FPIDLGPESFLARKPSAPALIKELGLEDE   77 (452)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECC--EEEECCCCCCEECCHHHHHHHHHCCCCCE
T ss_conf             95999998-7899999999996497997899988998810388983699--99968888022378679999998599634


Q ss_pred             EECCCCC
Q ss_conf             8227630
Q gi|254780294|r   78 IIDTSTA   84 (311)
Q Consensus        78 vid~ss~   84 (311)
                      .++.+..
T Consensus        78 ~i~~~~~   84 (452)
T PRK11883         78 LVSNTAG   84 (452)
T ss_pred             EECCCCC
T ss_conf             5057888


No 266
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=85.33  E-value=1.5  Score=22.56  Aligned_cols=36  Identities=22%  Similarity=0.235  Sum_probs=30.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC
Q ss_conf             907999758867899999998629-9728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~   37 (311)
                      |.||-|||+ |..|....+-|.++ |..+++.+..++.
T Consensus         1 M~kiVIIG~-g~AG~~aA~~lrk~~~~~eItvi~~e~~   37 (438)
T PRK13512          1 MPKIVVVGA-VAGGATCASQIRRLDKESDIIIFEKDRD   37 (438)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf             980999898-4999999999994391999999968998


No 267
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.29  E-value=2.3  Score=21.51  Aligned_cols=17  Identities=18%  Similarity=0.026  Sum_probs=8.0

Q ss_pred             CCCCEEEECCCCHHHHH
Q ss_conf             79989999389837899
Q gi|254780294|r   48 NAADVSILCLPDVASLE   64 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~   64 (311)
                      -++..-.+.+|..++.+
T Consensus        61 ~Gi~~~~~~l~~~~s~~   77 (288)
T PRK10792         61 VGFVSRSYDLPETTSEA   77 (288)
T ss_pred             CCCEEEEEECCCCCCHH
T ss_conf             59979998668899999


No 268
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.22  E-value=2.7  Score=21.05  Aligned_cols=73  Identities=16%  Similarity=0.040  Sum_probs=35.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861258489822
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      |.||.++-+..+.+.-  .+....-..+....... + ...+ -+...++|+++. .....+++...++..    .++|.
T Consensus         1 ~mkiv~ld~~~~~~~~--~~~~~~~~~~~~~~~~t-~-~eel-~e~i~dad~ii~-~~~~i~~~vl~~ap~----LK~I~   70 (314)
T PRK06932          1 MMKIVFLDSTAIPKHI--SIPRPSFEHEWTEYDHT-S-ADQT-IERAKDADIVIT-SKVIFSRETLQQLPK----LKLIA   70 (314)
T ss_pred             CCEEEEEECCCCCCCC--CCCCCCCCCEEEECCCC-C-HHHH-HHHHCCCCEEEE-CCCCCCHHHHHCCCC----CEEEE
T ss_conf             9659998544478877--63113568507978999-9-8999-998579989997-898639999953999----80998


Q ss_pred             CCC
Q ss_conf             763
Q gi|254780294|r   81 TST   83 (311)
Q Consensus        81 ~ss   83 (311)
                      ..+
T Consensus        71 ~~g   73 (314)
T PRK06932         71 ITA   73 (314)
T ss_pred             ECC
T ss_conf             898


No 269
>KOG2733 consensus
Probab=85.18  E-value=1.5  Score=22.65  Aligned_cols=123  Identities=20%  Similarity=0.217  Sum_probs=62.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCH------------------------------HHHCC
Q ss_conf             0799975886789999999862997289999--653007860066------------------------------77479
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--PCEERHNLRYRE------------------------------DLLNA   49 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--~s~~~ag~~~~~------------------------------~~~~~   49 (311)
                      +-+-|.||||++|+-.++-+...-.++-..+  |+++.  +++.+                              +..+.
T Consensus         6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~--~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~   83 (423)
T KOG2733           6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE--KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ   83 (423)
T ss_pred             EEEEEECCCCCCCEEEHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH
T ss_conf             35999815666530248988643024675478732788--8999999998632488866543899437887899999864


Q ss_pred             CCEEEECCCCH--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             98999938983--7899999986125848982276303555431100210004776520496077258421133112478
Q gi|254780294|r   50 ADVSILCLPDV--ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR  127 (311)
Q Consensus        50 ~Divf~a~p~~--~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~  127 (311)
                      +-+++-|++.=  .-...+..+.|.|+.  .+|-|+...+-...     +.+-+++..-++--||+..|--.++.-+.+.
T Consensus        84 ~~vivN~vGPyR~hGE~VVkacienG~~--~vDISGEP~f~E~m-----q~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~  156 (423)
T KOG2733          84 ARVIVNCVGPYRFHGEPVVKACIENGTH--HVDISGEPQFMERM-----QLKYHDLAKEKGVYIVSACGFDSIPADLGVM  156 (423)
T ss_pred             HEEEEECCCCCEECCCHHHHHHHHCCCC--EECCCCCHHHHHHH-----HHHHHHHHHHCCEEEEEECCCCCCCCCCEEE
T ss_conf             1787751556312471899999875985--33147887999999-----8878777775573999504667777510014


Q ss_pred             HHHHHC
Q ss_conf             888850
Q gi|254780294|r  128 PLRKAK  133 (311)
Q Consensus       128 PL~~~~  133 (311)
                      -+.+.+
T Consensus       157 f~~k~f  162 (423)
T KOG2733         157 FLRKNF  162 (423)
T ss_pred             EEHHHC
T ss_conf             436332


No 270
>pfam07075 DUF1343 Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.
Probab=84.94  E-value=2.8  Score=20.97  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=50.7

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCC-------CCCCC----------------------CHHHHCCCCEEEECCCCHH---
Q ss_conf             999999986299728999965300-------78600----------------------6677479989999389837---
Q gi|254780294|r   14 GLKIRSRIVQRKDLCLLSIPCEER-------HNLRY----------------------REDLLNAADVSILCLPDVA---   61 (311)
Q Consensus        14 G~~li~lL~~hp~~~l~~l~s~~~-------ag~~~----------------------~~~~~~~~Divf~a~p~~~---   61 (311)
                      |+-++++|.+++.++|+.+.|-++       +|.++                      ..+.++++|+++|-+-+-=   
T Consensus        14 ~~~~~d~L~~~~~v~l~~lF~PEHG~~G~~~ag~~v~~~~D~~tglpv~SLYg~~~~Pt~~~L~~iDvlv~DiQDvG~R~   93 (359)
T pfam07075        14 LEHLVDLLLAAPGVNLKALFGPEHGFRGDAQAGEKVGDYVDPKTGLPVYSLYGKTRKPTPEMLKGVDVLVFDIQDVGVRF   93 (359)
T ss_pred             CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEEEEECCCEEE
T ss_conf             87899999665698689981798787404214985678768888990897989999999999836999999742276156


Q ss_pred             ------HHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             ------89999998612584898227630
Q gi|254780294|r   62 ------SLEIIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        62 ------s~~~~~~~~~~g~~~~vid~ss~   84 (311)
                            -.....++.+.|...+|.|-=..
T Consensus        94 YTyi~Tm~~~meaaa~~~~~~iVLDRPNP  122 (359)
T pfam07075        94 YTYISTLAYAMEAAAEAGKEFIVLDRPNP  122 (359)
T ss_pred             EEHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             54599999999999974995899478998


No 271
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=84.85  E-value=1.5  Score=22.64  Aligned_cols=32  Identities=16%  Similarity=0.326  Sum_probs=26.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             079997588678999999986299728999965
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      +||+|||| |..|..+--.|.++..++++.+-.
T Consensus         1 mkV~IVGa-GiaGL~lA~~L~r~g~i~V~V~Er   32 (414)
T TIGR03219         1 LRVAIIGG-GIAGVALALNLCKHSHLNVQLFEA   32 (414)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             98999994-489999999998539998899942


No 272
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=84.83  E-value=1.8  Score=22.21  Aligned_cols=37  Identities=16%  Similarity=0.141  Sum_probs=28.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      +||||||| |.-|..-++-|.+. -++.+.+-.++..|-
T Consensus         2 KrVAIIGA-G~SGL~a~K~lle~-G~~~~~FE~~~~iGG   38 (532)
T pfam00743         2 KKVAVIGA-GVSGLSSIKCCLEE-GLEPTCFERSDDIGG   38 (532)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCC
T ss_conf             87999897-29999999999877-998299977999735


No 273
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=84.69  E-value=2.9  Score=20.90  Aligned_cols=118  Identities=10%  Similarity=-0.028  Sum_probs=66.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC------------------------C
Q ss_conf             07999758867899999998629972899---------------99653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~------------------------~   42 (311)
                      .+|.|||| |=.|.-.+.-|+.--.-+|.               .+.+.+..|+.                        +
T Consensus        29 s~VlvvG~-GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l  107 (355)
T PRK05597         29 AKVSVIGA-GGLGSPALLYLAGAGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRL  107 (355)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHC
T ss_conf             96899877-76689999999984997599972999261213377565412179797999999999878997427533215


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCE-EEECCCC
Q ss_conf             6----6774799899993898378999999861258489822763035554311002100047765204960-7725842
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSAR-YITNPGC  117 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~-iIanPnC  117 (311)
                      +    .+.++++|+|+=|+++-.++-....+...-. +..|. ++.+|++-.+-...|.-.|-.+...+... -=..|||
T Consensus       108 ~~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~-~PlV~-ga~~~~~Gq~~vf~~~~~pcyrclfP~~p~~~~~~~C  185 (355)
T PRK05597        108 DWSNALSELADADVILDGSDNFDTRHVASWAAARLG-IPHVW-ASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSC  185 (355)
T ss_pred             CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf             777899775288789876788889999999999869-98799-6524467888634699998715578999972134671


Q ss_pred             CCCCC
Q ss_conf             11331
Q gi|254780294|r  118 YATGA  122 (311)
Q Consensus       118 ~~t~~  122 (311)
                      .....
T Consensus       186 ~~~GV  190 (355)
T PRK05597        186 SQAGV  190 (355)
T ss_pred             HHCCC
T ss_conf             43287


No 274
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=84.68  E-value=1.8  Score=22.21  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=47.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHC------CCCEEEECCCCHHHHHHHHHHHHCCC
Q ss_conf             07999758867899999998629-972899996530078600667747------99899993898378999999861258
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNLRYREDLLN------AADVSILCLPDVASLEIIQLIKKNGI   74 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~~~~~~~~~------~~Divf~a~p~~~s~~~~~~~~~~g~   74 (311)
                      .+|+|||| |..|...--.|.++ |..+++.|-.+.+.|-.+..+...      +.+-.+++     -.+....+.|.|.
T Consensus         1 ~~i~IiG~-GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-----~~~~l~li~eLGl   74 (444)
T COG1232           1 MKIAIIGG-GIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-----KEEILDLIKELGL   74 (444)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCEEEEECHHHEECC-----HHHHHHHHHHHCC
T ss_conf             93999878-28889999999985899867998348877865899831888875050440114-----0889999998481


Q ss_pred             CEEEE
Q ss_conf             48982
Q gi|254780294|r   75 NSRII   79 (311)
Q Consensus        75 ~~~vi   79 (311)
                      +-..+
T Consensus        75 ed~l~   79 (444)
T COG1232          75 EDKLL   79 (444)
T ss_pred             HHHHC
T ss_conf             77640


No 275
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=84.60  E-value=2.9  Score=20.88  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=37.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE-CCCCHHHHHHHHHHHHCCC
Q ss_conf             079997588678999999986299728999965300786006677479989999-3898378999999861258
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL-CLPDVASLEIIQLIKKNGI   74 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~-a~p~~~s~~~~~~~~~~g~   74 (311)
                      .||.|+|+ |++|.|+-+.|.+. -.+++.+....+               ++. .++.+.+..+...+.+.|.
T Consensus       138 k~vvViGg-G~IGlE~A~~l~~~-G~~Vtvve~~~~---------------il~~~~d~~~~~~~~~~l~~~Gv  194 (427)
T TIGR03385       138 DRVVIIGG-GYIGLEMVEALRER-GKNVTLIHRSDK---------------ILNKLFDEEMNQIVEEELEKHEI  194 (427)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECCC---------------CCCCCCCHHHHHHHHHHHHHCCC
T ss_conf             88999996-39999999999976-998999984683---------------36554899999999999997597


No 276
>PRK05920 aromatic acid decarboxylase; Validated
Probab=84.54  E-value=1.7  Score=22.34  Aligned_cols=36  Identities=17%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             CCE--EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             907--999758867-8999999986299728999965300
Q gi|254780294|r    1 MYK--IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         1 M~k--VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |.|  |||=||||. -|.++++.|.+. .+|++++.|+.-
T Consensus         4 mkrivvgITGASG~~ya~rll~~L~~~-~~ev~lviS~~a   42 (205)
T PRK05920          4 MKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLVISKAA   42 (205)
T ss_pred             CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEECHHH
T ss_conf             875999986542799999999999867-998999986789


No 277
>KOG0029 consensus
Probab=84.29  E-value=2.1  Score=21.74  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=34.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHH
Q ss_conf             907999758867899999998629972899996530078600667
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRED   45 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~   45 (311)
                      +.+|.|||| |..|..--|.|.+- -+++..|-++...|-++...
T Consensus        15 ~~~VIVIGA-GiaGLsAArqL~~~-G~~V~VLEARdRvGGRI~t~   57 (501)
T KOG0029          15 KKKVIVIGA-GLAGLSAARQLQDF-GFDVLVLEARDRVGGRIYTF   57 (501)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEEE
T ss_conf             883899898-57899999999975-98259997147767647787


No 278
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.27  E-value=3  Score=20.79  Aligned_cols=76  Identities=14%  Similarity=0.020  Sum_probs=50.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC---------C----CCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             079997588678999999986299-72899996530078---------6----006677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN---------L----RYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag---------~----~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .||+|+|. |-.|+-..+.|.++- ...+..........         .    ....+.+.++|+++.+=+=.....+..
T Consensus         9 kkv~V~Gl-G~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi~~~~p~~~   87 (468)
T PRK04690          9 KRVALWGW-GREGRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGISPYRPEAL   87 (468)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCHHHH
T ss_conf             97999834-78799999999966990499972883246466762045756746778557614889998995798689999


Q ss_pred             HHHHCCCCEEEEC
Q ss_conf             9861258489822
Q gi|254780294|r   68 LIKKNGINSRIID   80 (311)
Q Consensus        68 ~~~~~g~~~~vid   80 (311)
                      .+.++|..  |+.
T Consensus        88 ~a~~~~i~--i~~   98 (468)
T PRK04690         88 AAAAQGTP--FIG   98 (468)
T ss_pred             HHHHCCCC--EEE
T ss_conf             99987994--886


No 279
>TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343   Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin .   The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA.   The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III.   Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) .   This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process.
Probab=84.11  E-value=2.2  Score=21.62  Aligned_cols=89  Identities=20%  Similarity=0.209  Sum_probs=58.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CC--------CC-CCCC---------HHHHCCCCEEEECCCCHH-
Q ss_conf             0799975886789999999862997289999653-00--------78-6006---------677479989999389837-
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ER--------HN-LRYR---------EDLLNAADVSILCLPDVA-   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~--------ag-~~~~---------~~~~~~~Divf~a~p~~~-   61 (311)
                      .||=|||| |--|+=.++-|.++-..++.-+--+ +.        .| ..+.         ++.+..+||||+|+++.- 
T Consensus       186 ~~~LliGA-GeMg~Lva~~L~~~~v~~~~i~NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~~~DivissTgA~~p  264 (436)
T TIGR01035       186 KKVLLIGA-GEMGELVAKHLREKGVGKVLIANRTYERAEKLAKELGGPEAVKFEALALEKLEEALAEADIVISSTGAPEP  264 (436)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf             41899827-45799999999648952898855677899999987078664544455489999997428899985576531


Q ss_pred             --HHHHHHHH-HHC-----CCCEEEECCCCCHHHHHHH
Q ss_conf             --89999998-612-----5848982276303555431
Q gi|254780294|r   62 --SLEIIQLI-KKN-----GINSRIIDTSTAHRIAPGW   91 (311)
Q Consensus        62 --s~~~~~~~-~~~-----g~~~~vid~ss~~R~~~~v   91 (311)
                        +++....+ .++     .....+||.+-.---||++
T Consensus       265 i~~~~~~e~a~~~Rr~de~~~pl~~~DIAvPRdvd~~v  302 (436)
T TIGR01035       265 IVSKEDVERALKERRRDEAARPLFIVDIAVPRDVDPEV  302 (436)
T ss_pred             CCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH
T ss_conf             00203489999972220015886999758899863786


No 280
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=84.07  E-value=1.8  Score=22.19  Aligned_cols=63  Identities=14%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             CCCEEEEEEECCCCC-------C---CCC-CHHHHCCCCEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCHH
Q ss_conf             997289999653007-------8---600-667747998999938983789999998612-58489822763035
Q gi|254780294|r   24 RKDLCLLSIPCEERH-------N---LRY-REDLLNAADVSILCLPDVASLEIIQLIKKN-GINSRIIDTSTAHR   86 (311)
Q Consensus        24 hp~~~l~~l~s~~~a-------g---~~~-~~~~~~~~Divf~a~p~~~s~~~~~~~~~~-g~~~~vid~ss~~R   86 (311)
                      .+..++..+..++..       |   ... ..+...++|++|+|+|-+...++.+.+... +.++.|.|-+|--.
T Consensus         9 ~~~~~I~g~d~~~~~~~~A~~~g~id~~~~~~~~~~~aDlvila~Pv~~~~~~l~~l~~~~~~~~ivtDv~SvK~   83 (258)
T pfam02153         9 GFNVTVIGYDIDEEAAVAAVELGLGDEATNDIEAAQEADIVVLAVPIEVTLEVLKELAPHLKEGALITDVGSVKV   83 (258)
T ss_pred             CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCH
T ss_conf             999679998599999999998699032468677766799999969999999999998865589958995355557


No 281
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=83.92  E-value=3.1  Score=20.70  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=25.7

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             99975886789999999862997289999653
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |-|-|++|++|..|++.|.+..+-++..+..-
T Consensus         2 ILVTGgaGFIGS~l~~~L~~~G~~~V~~~Dnl   33 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL   33 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf             99940597999999999997799809999789


No 282
>pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD.
Probab=83.91  E-value=3.1  Score=20.69  Aligned_cols=63  Identities=19%  Similarity=0.211  Sum_probs=41.8

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC------------------CCHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             99975886789999999862997289999653007860------------------066774799899993898378999
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR------------------YREDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~------------------~~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      |-|+|. |-+|+.+.+.|.++-  ++..+..+...-++                  +.+...+++|.++.++++....-.
T Consensus         1 viI~G~-g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~   77 (115)
T pfam02254         1 IIIIGY-GRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEANIL   77 (115)
T ss_pred             CEEECC-CHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHH
T ss_conf             999878-889999999998089--99999998799877886698699995688667876192028799996298499999


Q ss_pred             HHHH
Q ss_conf             9998
Q gi|254780294|r   66 IQLI   69 (311)
Q Consensus        66 ~~~~   69 (311)
                      +-..
T Consensus        78 ~~~~   81 (115)
T pfam02254        78 IVLL   81 (115)
T ss_pred             HHHH
T ss_conf             9999


No 283
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=83.29  E-value=2.9  Score=20.88  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=57.9

Q ss_pred             CEEEEECCCCHH-HHHHHHHHHCC---CCEEEEEEECCCCC---------------CC--CC-----CHHHHCCCCEEEE
Q ss_conf             079997588678-99999998629---97289999653007---------------86--00-----6677479989999
Q gi|254780294|r    2 YKIFIDGEHGTT-GLKIRSRIVQR---KDLCLLSIPCEERH---------------NL--RY-----REDLLNAADVSIL   55 (311)
Q Consensus         2 ~kVaIvGATG~v-G~~li~lL~~h---p~~~l~~l~s~~~a---------------g~--~~-----~~~~~~~~Divf~   55 (311)
                      +||+|+||=..+ ..+|++-|...   |..+|.+..-++..               |.  ++     .++.++++|+||.
T Consensus         1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf             97999998648759999999960845789989998899999999999999999851998189996899998468999999


Q ss_pred             CC--CCHHHHHHHH-HHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             38--9837899999-986125848982276---30355543110021000477652049607725842
Q gi|254780294|r   56 CL--PDVASLEIIQ-LIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        56 a~--p~~~s~~~~~-~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      +.  +.-.++..-. .-.+.|..--|-+..   +-++.--.+|..+ |+-.+-.+.-++++++.--|.
T Consensus        81 ~irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~l-eia~~i~e~~P~AwiiNytNP  147 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLL-DIARDIEELCPDAWLLNYANP  147 (423)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHH-HHHHHHHHHCCCCEEEECCCH
T ss_conf             8774682488988848988396604456547758999862289999-999999987998389976788


No 284
>KOG0455 consensus
Probab=83.24  E-value=3.3  Score=20.52  Aligned_cols=34  Identities=18%  Similarity=0.269  Sum_probs=25.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC--------CCEEEEEEECCCC
Q ss_conf             7999758867899999998629--------9728999965300
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR--------KDLCLLSIPCEER   37 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h--------p~~~l~~l~s~~~   37 (311)
                      +|+++|+ |-||++|++.+..-        -.+++..+++.++
T Consensus         5 nVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~   46 (364)
T KOG0455           5 NVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES   46 (364)
T ss_pred             CEEEEEC-CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf             0899945-60679999999877643116716999999941313


No 285
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=82.87  E-value=2.8  Score=20.91  Aligned_cols=33  Identities=18%  Similarity=0.213  Sum_probs=27.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             90799975886789999999862997289999653
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |..|.|||| |.||.-+--.|.+. .+.+..+..+
T Consensus         1 m~DV~IvGa-G~vGl~lAl~La~~-g~~v~lie~~   33 (374)
T PRK06617          1 MSNTVILGC-GLSGMLTALSFAQK-GIKTTIFESK   33 (374)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECC
T ss_conf             962999996-69999999999857-9969999789


No 286
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=82.83  E-value=3.4  Score=20.42  Aligned_cols=123  Identities=15%  Similarity=0.088  Sum_probs=67.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC----------CCEEEE-----EEECCCCCCCC----------C--------------
Q ss_conf             07999758867899999998629----------972899-----99653007860----------0--------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR----------KDLCLL-----SIPCEERHNLR----------Y--------------   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h----------p~~~l~-----~l~s~~~ag~~----------~--------------   42 (311)
                      .+|.|||| |-.|......|..-          ..+|+.     .+..++..|+.          +              
T Consensus        25 s~VlIVGa-GGLGs~~a~~La~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~  103 (337)
T PRK12475         25 KHVLIIGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT  103 (337)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH
T ss_conf             96999977-77789999999982898699984998314467453002221215574889999999984499974475131


Q ss_pred             --C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             --6----6774799899993898378999999861258489822763035554311002100047765204960772584
Q gi|254780294|r   43 --R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        43 --~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                        .    ++.++++|+|+=|+++-.++-+...+.-+-. +.+|. +++.+++..+--.+|.-.+-.+-..+.  -..++.
T Consensus       104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~-~PlV~-ga~~g~~G~~~~~~p~~tpCyrClf~~--p~~~~t  179 (337)
T PRK12475        104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYN-IPWIY-GGCVGSYGVTYTIIPGKTPCFRCLMEH--PVGGAT  179 (337)
T ss_pred             CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EEEECCEEEEEEECCCCCCCHHHCCCC--CCCCCC
T ss_conf             19979999998618899988889999999999999969-99899-887056889998779998734115799--998998


Q ss_pred             CCCCCCHHHHHHH
Q ss_conf             2113311247888
Q gi|254780294|r  117 CYATGAIAILRPL  129 (311)
Q Consensus       117 C~~t~~~laL~PL  129 (311)
                      |.+...+-++..+
T Consensus       180 C~~~GVlgp~~gi  192 (337)
T PRK12475        180 CDTAGIIQPAVQI  192 (337)
T ss_pred             CCCCCCCCCHHHH
T ss_conf             6457766333889


No 287
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH).  M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein.  NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=82.76  E-value=3.4  Score=20.41  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=49.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--------ECCCCC---------CCCCCHHHHCCCCEEEECCCCH---H
Q ss_conf             0799975886789999999862997289999--------653007---------8600667747998999938983---7
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--------PCEERH---------NLRYREDLLNAADVSILCLPDV---A   61 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--------~s~~~a---------g~~~~~~~~~~~Divf~a~p~~---~   61 (311)
                      +++.|||-|=.||+=|-.||.++ ...++.+        .-..+.         ......+.....|+++.|.|..   +
T Consensus        63 k~vvVIGRS~iVGkPla~LL~~~-~ATVt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDIvI~avg~p~~~i  141 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLAND-GARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKV  141 (197)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCCCCCC
T ss_conf             98999898731548899999738-99677503442146404665221245641421005654234799998878776656


Q ss_pred             HHHHHHHHHHCCCCEEEECCCCCH
Q ss_conf             899999986125848982276303
Q gi|254780294|r   62 SLEIIQLIKKNGINSRIIDTSTAH   85 (311)
Q Consensus        62 s~~~~~~~~~~g~~~~vid~ss~~   85 (311)
                      ..+|    .+.|  ..|||-+..-
T Consensus       142 ~~~~----vk~G--aivIDvg~~~  159 (197)
T cd01079         142 PTEL----LKDG--AICINFASIK  159 (197)
T ss_pred             CHHH----CCCC--CEEEEECCCC
T ss_conf             6755----4489--6899816843


No 288
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=82.60  E-value=3.5  Score=20.37  Aligned_cols=37  Identities=11%  Similarity=0.152  Sum_probs=25.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      +||||||+ |=.|..--..|... -.+++.+-.....|-
T Consensus       138 kkVAVIGa-GPAGLsaA~~La~~-G~~VtVfE~~~~~GG  174 (560)
T PRK12771        138 KRVAVIGG-GPAGLSAAYQLRRL-GHAVTIFEAGPKLGG  174 (560)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCC
T ss_conf             98999897-78999999999976-985899676788898


No 289
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=82.11  E-value=3.6  Score=20.26  Aligned_cols=70  Identities=14%  Similarity=0.140  Sum_probs=48.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC------------------------C
Q ss_conf             0799975886789999999862997289999---------------653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~------------------------~   42 (311)
                      .+|.|||+ |-+|......|+.--.-+|+.+               .+++..|+.                        +
T Consensus        33 s~VlivG~-GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i  111 (245)
T PRK05690         33 ARVLVVGL-GGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARL  111 (245)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCC
T ss_conf             97899877-77789999999985996599996886788867888645987789887999999999758875226333144


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             6----67747998999938983789999998612
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIKKN   72 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~   72 (311)
                      .    .+.++++|+|+-|+++-.++.+...+..+
T Consensus       112 ~~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~  145 (245)
T PRK05690        112 DDDELAALIAAHDLVLDCTDNVATRNQLNAACFA  145 (245)
T ss_pred             CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             8889988750788899878999999999999997


No 290
>KOG0657 consensus
Probab=81.82  E-value=0.7  Score=24.69  Aligned_cols=97  Identities=12%  Similarity=0.116  Sum_probs=63.5

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH
Q ss_conf             79989999389837899999986125848982276303555431100210004776520496077258421133112478
Q gi|254780294|r   48 NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR  127 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~  127 (311)
                      .+.|++.-+.+--.+.+-+....+.|...++|+..+.     |.|.-+..||.+..+.-.  .+|+|--|++.+..--.+
T Consensus        73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~-----dapmfv~gVn~~~y~~~~--~iiSnascttnclaPlaK  145 (285)
T KOG0657          73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA-----DAPMFVMGVNGEKYDNSL--DIISNASCTTNCLAPLAK  145 (285)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-----CCCCCCCCCCCCCCCCCC--CEEECHHHHHCCCCCHHH
T ss_conf             2750575056542124566521146625899605467-----787210255555556544--223035665412351432


Q ss_pred             HHHHHCCCCCCCCEEEEEECCCCC
Q ss_conf             888850345565026765123333
Q gi|254780294|r  128 PLRKAKLLPDRYPITINAVSGYTG  151 (311)
Q Consensus       128 PL~~~~~i~~~~~~~~~~~sg~sg  151 (311)
                      -+++.++|.+..-+++.++.+...
T Consensus       146 Vi~d~fgI~EgLMtTvha~tatQk  169 (285)
T KOG0657         146 VIHDNFGIMEGLMTTVHAITATQK  169 (285)
T ss_pred             EEECCCCCCCCCCCCEEEECCCCC
T ss_conf             120034411343342022025554


No 291
>PRK08291 ornithine cyclodeaminase; Validated
Probab=81.71  E-value=3.2  Score=20.61  Aligned_cols=13  Identities=15%  Similarity=0.095  Sum_probs=5.2

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             1368999999998
Q gi|254780294|r  294 KGASGAAIQNMDL  306 (311)
Q Consensus       294 KGAAgnAVQn~nl  306 (311)
                      -|-|.|=+-.+.+
T Consensus       302 ~G~ai~D~a~A~~  314 (330)
T PRK08291        302 TGTGVQDTAIATL  314 (330)
T ss_pred             CCHHHHHHHHHHH
T ss_conf             8849999999999


No 292
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=81.70  E-value=3.8  Score=20.16  Aligned_cols=82  Identities=16%  Similarity=0.252  Sum_probs=48.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHC--CCCEEEEC--CCC-HHHHHHHHHHHHCCCC
Q ss_conf             907999758867899999998629972899996530078600667747--99899993--898-3789999998612584
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLN--AADVSILC--LPD-VASLEIIQLIKKNGIN   75 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~--~~Divf~a--~p~-~~s~~~~~~~~~~g~~   75 (311)
                      |.++-|-|||+=.|+++.+.|++| ..++.+++-++..=..+..+.-.  ++++-+..  +.. +........+.+.++.
T Consensus         6 ~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~   84 (265)
T COG0300           6 GKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP   84 (265)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCC
T ss_conf             867999778864899999999977-9979999676999999999998730862799977678836799999999824885


Q ss_pred             EEE-ECCCC
Q ss_conf             898-22763
Q gi|254780294|r   76 SRI-IDTST   83 (311)
Q Consensus        76 ~~v-id~ss   83 (311)
                      +-+ |.|++
T Consensus        85 IdvLVNNAG   93 (265)
T COG0300          85 IDVLVNNAG   93 (265)
T ss_pred             CCEEEECCC
T ss_conf             238997787


No 293
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=81.32  E-value=3.9  Score=20.08  Aligned_cols=31  Identities=29%  Similarity=0.275  Sum_probs=14.5

Q ss_pred             EEEECCCCHHHHHHHHH----HHHCCCCEEEECCC
Q ss_conf             99993898378999999----86125848982276
Q gi|254780294|r   52 VSILCLPDVASLEIIQL----IKKNGINSRIIDTS   82 (311)
Q Consensus        52 ivf~a~p~~~s~~~~~~----~~~~g~~~~vid~s   82 (311)
                      .+++.-.+..|+-|+..    +.+.|.....++.+
T Consensus        34 avilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~   68 (283)
T COG0190          34 AVILVGDDPASQVYVRSKKKAAEEIGIASELYDLP   68 (283)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf             99996797789999999999999819736898578


No 294
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=81.30  E-value=3.4  Score=20.41  Aligned_cols=36  Identities=22%  Similarity=0.334  Sum_probs=30.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC
Q ss_conf             9079997588678999999986299-728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~   37 (311)
                      |.||-|||+ ||.|....+-|..++ ..+++++.-...
T Consensus         3 ~~~iVIlGg-GfgGl~~a~~l~~~~~~~~itLVd~~~~   39 (405)
T COG1252           3 KKRIVILGG-GFGGLSAAKRLARKLPDVEITLVDRRDY   39 (405)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf             756999898-6799999997641678871899918876


No 295
>PRK07574 formate dehydrogenase; Provisional
Probab=81.26  E-value=3.9  Score=20.07  Aligned_cols=52  Identities=23%  Similarity=0.166  Sum_probs=27.8

Q ss_pred             HHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHH
Q ss_conf             999862997289999653007860066774799899993--898378999999861
Q gi|254780294|r   18 RSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKK   71 (311)
Q Consensus        18 i~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~   71 (311)
                      .+.|+.+ --++...+.+...+ ..-+..+.+.|++++.  -|.=++++...++..
T Consensus        61 r~~le~~-gh~~v~t~dk~g~~-~~~~~~l~da~ivis~pf~p~ylT~E~IekApn  114 (385)
T PRK07574         61 RTFLEER-GHELVVTSDKDGPD-SVFERELPDADVVISQPFWPAYLTAERIAKAPN  114 (385)
T ss_pred             HHHHHHC-CCEEEEECCCCCCC-CHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCC
T ss_conf             8889855-91699965888985-067751577639974588732114999943886


No 296
>KOG2337 consensus
Probab=81.14  E-value=3.9  Score=20.04  Aligned_cols=129  Identities=16%  Similarity=0.145  Sum_probs=65.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-----------------CCCC-----------------------
Q ss_conf             079997588678999999986299728999965300-----------------7860-----------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-----------------HNLR-----------------------   41 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-----------------ag~~-----------------------   41 (311)
                      .|+-++|| |.-|-..-|-|..--...|+++....-                 .|.+                       
T Consensus       341 ~KcLLLGA-GTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~  419 (669)
T KOG2337         341 TKCLLLGA-GTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYV  419 (669)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE
T ss_conf             23689727-64321888888751230689872571423663544333166664068730588999999857542232037


Q ss_pred             ---------CC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHH----HH------
Q ss_conf             ---------06--------------6774799899993898378999999861258489822763035----55------
Q gi|254780294|r   42 ---------YR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHR----IA------   88 (311)
Q Consensus        42 ---------~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R----~~------   88 (311)
                               +.              +...++.|++|+.++.-.|+ |.|.+..+..+..||..+--|.    |-      
T Consensus       420 lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR-WLPtll~a~~~KivINaALGFDsylVMRHG~~~~  498 (669)
T KOG2337         420 LSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR-WLPTLLAAAKNKIVINAALGFDSYLVMRHGTGRK  498 (669)
T ss_pred             EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH-HHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCC
T ss_conf             963479982643337889889999999876456699972450320-2678887522126765200665368986278875


Q ss_pred             --------------HHHHHCCCCC-------CHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH
Q ss_conf             --------------4311002100-------0477652049607725842113311247888885
Q gi|254780294|r   89 --------------PGWVYGFPEM-------DKSQKEKIRSARYITNPGCYATGAIAILRPLRKA  132 (311)
Q Consensus        89 --------------~~vpl~vPEv-------N~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~  132 (311)
                                    +.-.|+.+=-       |.---..+..+.-|+-|||..++..+|..-|...
T Consensus       499 ~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~alAVELlvsl  563 (669)
T KOG2337         499 EASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIASALAVELLVSL  563 (669)
T ss_pred             CCCCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf             44542001432467755401476766205887544333311001137751677789999999999


No 297
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=81.05  E-value=3.3  Score=20.48  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=27.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             907999758867899999998629972899996530
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE   36 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~   36 (311)
                      |.+|+|||| |.||.-.---|.++ -.+++.+...+
T Consensus         1 m~~V~VIGa-GivGlstA~~La~~-G~~VtviDr~~   34 (410)
T PRK12409          1 MSHIAVIGA-GITGVTTAYALAQR-GYQVTVFDRHR   34 (410)
T ss_pred             CCCEEEECC-HHHHHHHHHHHHHC-CCCEEEEECCC
T ss_conf             995999898-39999999999978-99189996989


No 298
>KOG0172 consensus
Probab=80.83  E-value=4  Score=19.97  Aligned_cols=71  Identities=11%  Similarity=0.082  Sum_probs=50.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC----C---------------HHHHCCCCEEEECCCCHH
Q ss_conf             907999758867899999998629972899996530078600----6---------------677479989999389837
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY----R---------------EDLLNAADVSILCLPDVA   61 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~----~---------------~~~~~~~Divf~a~p~~~   61 (311)
                      |.+|-++|+ |+|-+-.++.|++..+++++.-+-.-+.++.+    .               +...+..|++.+-+|-..
T Consensus         2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLlP~t~   80 (445)
T KOG0172           2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLLPYTF   80 (445)
T ss_pred             CCCEEEECC-CCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCHH
T ss_conf             862699537-5313347888741678238986346778999842788650677742517889865154112664043013


Q ss_pred             HHHHHHHHHHC
Q ss_conf             89999998612
Q gi|254780294|r   62 SLEIIQLIKKN   72 (311)
Q Consensus        62 s~~~~~~~~~~   72 (311)
                      -.-.+..+...
T Consensus        81 h~lVaK~~i~~   91 (445)
T KOG0172          81 HPLVAKGCIIT   91 (445)
T ss_pred             HHHHHHHHHHH
T ss_conf             38899888886


No 299
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=80.40  E-value=4.2  Score=19.89  Aligned_cols=36  Identities=19%  Similarity=0.092  Sum_probs=30.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC
Q ss_conf             07999758867899999998629-97289999653007
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH   38 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a   38 (311)
                      .+|-|||+ |..|....+-|.++ +..+|+.+..+...
T Consensus         4 ~~iVIIG~-G~AG~~aA~~lR~~g~~g~Itli~~E~~~   40 (400)
T PRK09754          4 KTIIIVGG-GQAAAMAAASLRQQGFTGELHLFSDERHL   40 (400)
T ss_pred             CEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCCC
T ss_conf             72999977-59999999999806949979999899999


No 300
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=80.06  E-value=3.7  Score=20.17  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=27.3

Q ss_pred             EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             999758867-8999999986299728999965300
Q gi|254780294|r    4 IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         4 VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |||=||||. -|-+|++.|.+.. .|++++-|+..
T Consensus         7 vgisGASG~iygvrlLe~L~~~~-~e~hlviS~~a   40 (191)
T COG0163           7 VGISGASGAIYGVRLLEVLRELG-VETHLVISKAA   40 (191)
T ss_pred             EEEECCCCHHHHHHHHHHHHHCC-CEEEEEECHHH
T ss_conf             99736642899999999997469-56999986789


No 301
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=79.60  E-value=4.4  Score=19.73  Aligned_cols=109  Identities=17%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC----CCEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEE
Q ss_conf             07999758867899999998629----97289999653007---------------8600-------6677479989999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR----KDLCLLSIPCEERH---------------NLRY-------REDLLNAADVSIL   55 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h----p~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~   55 (311)
                      .||+|+||-+.-..+|++=|..+    |..+|.+..-++..               |..+       .++.++++|+||.
T Consensus         1 mKI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~   80 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN   80 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf             97999898368789999999838433788989998899999999999999999961998389997899998568999999


Q ss_pred             CC--CCHHHHHHH-HHHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEE
Q ss_conf             38--983789999-9986125848982276---3035554311002100047765204960772
Q gi|254780294|r   56 CL--PDVASLEII-QLIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYIT  113 (311)
Q Consensus        56 a~--p~~~s~~~~-~~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIa  113 (311)
                      +.  +.-.++..- ..-.+.|  ..--|..   +-||---.+|..+. +-.+-.+.-++++++-
T Consensus        81 ~irvGg~~~r~~De~IplkyG--v~gqeT~G~GG~~~alRtIPv~l~-ia~~i~e~cP~AwliN  141 (425)
T cd05197          81 QFRVGGLTYREKDEQIPLKYG--VIGQETVGPGGTFSGLRQIPYVLD-IARKXEKLSPDAWYLN  141 (425)
T ss_pred             EEEECCHHHHHHHHHHHHHCC--CEEECCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEE
T ss_conf             887567057899986898759--144437778899999842999999-9999998699808997


No 302
>PRK04965 nitric oxide reductase; Provisional
Probab=79.43  E-value=3.5  Score=20.32  Aligned_cols=36  Identities=19%  Similarity=0.288  Sum_probs=30.5

Q ss_pred             CCE-EEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC
Q ss_conf             907-999758867899999998629-9728999965300
Q gi|254780294|r    1 MYK-IFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER   37 (311)
Q Consensus         1 M~k-VaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~   37 (311)
                      |.+ |-|||+ |+.|..+.+-|.++ |..+|+.+..+..
T Consensus         1 M~~~IVIIG~-G~AG~~aa~~lR~~d~~~~Itvi~~e~~   38 (378)
T PRK04965          1 MSNGIVIIGS-GFAARQLVKNIRKQDAHIPITLITADSG   38 (378)
T ss_pred             CCCCEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf             9899999988-2999999999971194986999989999


No 303
>PRK07102 short chain dehydrogenase; Provisional
Probab=79.40  E-value=3.2  Score=20.58  Aligned_cols=45  Identities=22%  Similarity=0.162  Sum_probs=34.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH
Q ss_conf             9079997588678999999986299728999965300786006677
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL   46 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~   46 (311)
                      |++|-|.|||+=.|+++-+.|.++- .++...+.+...-+++.++.
T Consensus         1 MK~vlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~l~~~~~~l   45 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDTERLERIAADL   45 (243)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH
T ss_conf             9979991574599999999999879-98999989889999999999


No 304
>PRK07340 ornithine cyclodeaminase; Validated
Probab=79.10  E-value=3.9  Score=20.06  Aligned_cols=11  Identities=9%  Similarity=0.181  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHH
Q ss_conf             36899999999
Q gi|254780294|r  295 GASGAAIQNMD  305 (311)
Q Consensus       295 GAAgnAVQn~n  305 (311)
                      |-|.|=+-.+.
T Consensus       285 G~a~~Dla~A~  295 (304)
T PRK07340        285 GCAAWDLAACR  295 (304)
T ss_pred             CHHHHHHHHHH
T ss_conf             85999999999


No 305
>PRK06141 ornithine cyclodeaminase; Validated
Probab=78.94  E-value=4.6  Score=19.60  Aligned_cols=15  Identities=13%  Similarity=0.124  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             136899999999872
Q gi|254780294|r  294 KGASGAAIQNMDLLL  308 (311)
Q Consensus       294 KGAAgnAVQn~nlm~  308 (311)
                      -|-|.+=+-.+++.+
T Consensus       294 vG~a~~Dla~A~~vy  308 (313)
T PRK06141        294 VGTALEDLAAAILVY  308 (313)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             986999999999999


No 306
>PRK08118 topology modulation protein; Reviewed
Probab=78.51  E-value=2  Score=21.86  Aligned_cols=33  Identities=18%  Similarity=0.199  Sum_probs=28.1

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEE
Q ss_conf             907999758867899999998629---972899996
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIP   33 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~   33 (311)
                      |.||.|+|.+|-.=..|-+.|+++   |.+++-.+.
T Consensus         1 M~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~   36 (167)
T PRK08118          1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF   36 (167)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEE
T ss_conf             967999889998799999999998896979644347


No 307
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507   This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity.
Probab=78.46  E-value=3.1  Score=20.72  Aligned_cols=36  Identities=11%  Similarity=0.173  Sum_probs=28.2

Q ss_pred             CCEEEEECCCCHH-HHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             9079997588678-999999986299728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTT-GLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~v-G~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |+=|||=||||.. |.+|++.|-+. -.|+.++.|+.-
T Consensus         1 ~ivVa~TGAsGvI~G~RLL~~Lk~~-GvE~~LviS~~A   37 (181)
T TIGR00421         1 KIVVAITGASGVIYGIRLLEVLKEL-GVEVHLVISKWA   37 (181)
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHC-CCEEEEEECHHH
T ss_conf             9578622244899999999999867-936878635589


No 308
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.20  E-value=4.9  Score=19.46  Aligned_cols=72  Identities=22%  Similarity=0.246  Sum_probs=47.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----------CCC-----CCHHHHCCCCEEEECCCCHHHHHH
Q ss_conf             0799975886789999999862997289999653007-----------860-----066774799899993898378999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----------NLR-----YREDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----------g~~-----~~~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      .||.|+|. |-.|.-.+++|.++ ..++.....+.+.           |.+     ..+..+.++|+++.+-+=......
T Consensus         6 k~v~viGl-G~sG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~~p~   83 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLRKN-GAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPD   83 (445)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCCCHH
T ss_conf             98999998-99999999999978-99199997999953189997436996899378636501599999989953899999


Q ss_pred             HHHHHHCCCC
Q ss_conf             9998612584
Q gi|254780294|r   66 IQLIKKNGIN   75 (311)
Q Consensus        66 ~~~~~~~g~~   75 (311)
                      ...+.+.|..
T Consensus        84 l~~a~~~gi~   93 (445)
T PRK04308         84 IEAFKQNGGR   93 (445)
T ss_pred             HHHHHHCCCC
T ss_conf             9999975995


No 309
>PRK08605 D-lactate dehydrogenase; Validated
Probab=78.03  E-value=4.9  Score=19.43  Aligned_cols=77  Identities=13%  Similarity=0.019  Sum_probs=52.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861258489822
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      |.||.+.|... .=+.+++...+.-.+|+......-+.  . .-+..+++|.+....-..++++....+.+.|  +++|.
T Consensus         1 m~Ki~~~~~~~-~e~~~~~~~~~~~~~ev~~~~~~~~e--e-~i~~~~~~D~i~v~~~~~i~~~vl~~~~~l~--iK~I~   74 (332)
T PRK08605          1 MTKIKLMSVRD-EDAPYIKAWAEKHHVEVDLTKEALTD--D-NVEEVEGFDGLSLSQQIPLSEAIYKLLNELG--IKQIA   74 (332)
T ss_pred             CCEEEEEECCH-HHHHHHHHHHHHCCCEEEEECCCCCH--H-HHHHHCCCCEEEEECCCCCCHHHHHHHHHCC--CEEEE
T ss_conf             97699982766-56999999888659079996699998--9-9998579988999707977999999666369--77999


Q ss_pred             CCC
Q ss_conf             763
Q gi|254780294|r   81 TST   83 (311)
Q Consensus        81 ~ss   83 (311)
                      ..+
T Consensus        75 r~g   77 (332)
T PRK08605         75 QRS   77 (332)
T ss_pred             ECC
T ss_conf             777


No 310
>KOG0685 consensus
Probab=77.94  E-value=3.8  Score=20.15  Aligned_cols=40  Identities=28%  Similarity=0.410  Sum_probs=31.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC
Q ss_conf             79997588678999999986299728999965300786006
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR   43 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~   43 (311)
                      ||+|||| |+.|..--+.|.+--..++..+-++.+.|-++.
T Consensus        23 kIvIIGA-G~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~   62 (498)
T KOG0685          23 KIVIIGA-GIAGLAAATRLLENGFIDVLILEASDRIGGRIH   62 (498)
T ss_pred             EEEEECC-CHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEE
T ss_conf             4999898-567799999999828964899970466675576


No 311
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS).  After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=77.69  E-value=5  Score=19.37  Aligned_cols=56  Identities=20%  Similarity=0.198  Sum_probs=39.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC----CCEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEE
Q ss_conf             07999758867899999998629----97289999653007---------------8600-------6677479989999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR----KDLCLLSIPCEERH---------------NLRY-------REDLLNAADVSIL   55 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h----p~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~   55 (311)
                      .||+|+||=+.-..++++=|..+    |..+|.+..-....               |..+       .++.++++|+|+.
T Consensus         1 mKI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~   80 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA   80 (437)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE
T ss_conf             96999898468779999999828200698889997799999999999999999852998179996799998579999999


Q ss_pred             CC
Q ss_conf             38
Q gi|254780294|r   56 CL   57 (311)
Q Consensus        56 a~   57 (311)
                      +.
T Consensus        81 ~i   82 (437)
T cd05298          81 QI   82 (437)
T ss_pred             EE
T ss_conf             66


No 312
>PRK11749 putative oxidoreductase; Provisional
Probab=77.36  E-value=5.2  Score=19.31  Aligned_cols=38  Identities=16%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC
Q ss_conf             0799975886789999999862997289999653007860
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR   41 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~   41 (311)
                      +||||||| |=-|..--..|.+. -.+++.+-.....|--
T Consensus       141 kkVAIIGa-GPAGLsAA~~Lar~-G~~VtVfE~~~~~GGl  178 (460)
T PRK11749        141 KKVAVIGA-GPAGLTAAHRLARK-GYDVTIFEARDKAGGL  178 (460)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCE
T ss_conf             98999896-78999999999976-9847997047878755


No 313
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=77.02  E-value=5.3  Score=19.25  Aligned_cols=21  Identities=29%  Similarity=0.370  Sum_probs=10.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC
Q ss_conf             7999758867899999998629
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h   24 (311)
                      ||.|+|+ |-.|...-..+.+.
T Consensus         2 ~vvVIG~-GpaG~~aA~~aa~~   22 (458)
T PRK06912          2 KLVIIGG-GPAGYVAAITAAQN   22 (458)
T ss_pred             EEEEEEE-CHHHHHHHHHHHHC
T ss_conf             4999900-88999999999978


No 314
>PRK09483 response regulator; Provisional
Probab=76.20  E-value=5.5  Score=19.12  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=55.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEE
Q ss_conf             90799975886789999999862997289999653007860066774799899993--8983789999998612584898
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRI   78 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~v   78 (311)
                      |+||.|+=--=++-.-|-.+|++.|.+++..-+++.......  ..-...|++++-  +|..-.-+.+..+.+.....+|
T Consensus         1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~--~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~v   78 (216)
T PRK09483          1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKW--CRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKI   78 (216)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCE
T ss_conf             958999849999999999999748995899998999999999--985599999986889898752377888740899857


Q ss_pred             ECCCC
Q ss_conf             22763
Q gi|254780294|r   79 IDTST   83 (311)
Q Consensus        79 id~ss   83 (311)
                      +=.|+
T Consensus        79 ivls~   83 (216)
T PRK09483         79 IMLTV   83 (216)
T ss_pred             EEECC
T ss_conf             86305


No 315
>PRK08643 acetoin reductase; Validated
Probab=75.93  E-value=5.6  Score=19.07  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=45.9

Q ss_pred             CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHH-CCCCEEEECCC----CHHHHHHHHHHHHCCC
Q ss_conf             90799-975886789999999862997289999653007860066774-79989999389----8378999999861258
Q gi|254780294|r    1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLL-NAADVSILCLP----DVASLEIIQLIKKNGI   74 (311)
Q Consensus         1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~-~~~Divf~a~p----~~~s~~~~~~~~~~g~   74 (311)
                      |.||+ |-||++=.|+.+.+.|.+.- ..+....-++...++..++.. .+.+..++..+    .++-.-+.....+-|.
T Consensus         1 mnKvalVTGg~~GIG~aia~~la~~G-a~V~i~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   79 (256)
T PRK08643          1 MSKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGD   79 (256)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC
T ss_conf             98499995757889999999999879-99999969889999999999853990999980589999999999999998299


Q ss_pred             CEEEECCCCCHH
Q ss_conf             489822763035
Q gi|254780294|r   75 NSRIIDTSTAHR   86 (311)
Q Consensus        75 ~~~vid~ss~~R   86 (311)
                      --..|.|++-..
T Consensus        80 iDiLVNnAG~~~   91 (256)
T PRK08643         80 LNVVVNNAGLAP   91 (256)
T ss_pred             CCEEEECCCCCC
T ss_conf             879998998899


No 316
>PRK07208 hypothetical protein; Provisional
Probab=75.86  E-value=5.7  Score=19.06  Aligned_cols=39  Identities=18%  Similarity=0.226  Sum_probs=30.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
Q ss_conf             07999758867899999998629972899996530078600
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~   42 (311)
                      .||+|||| |..|...-..|.++ ..+++.+-.+...|--.
T Consensus         4 kkv~IiGA-G~~GL~aA~~L~~~-g~~v~vlEk~~~vGGl~   42 (474)
T PRK07208          4 KSVVIIGA-GPAGLTAAYELVKR-GYPVTILEADPEVGGIS   42 (474)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEE
T ss_conf             75999897-68999999999868-99759997899875447


No 317
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=75.42  E-value=5.8  Score=18.99  Aligned_cols=96  Identities=16%  Similarity=0.223  Sum_probs=51.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH-HCCCCEEEECCCC---HHHHHHHHHHHHC-CCCEEE
Q ss_conf             9997588678999999986299728999965300786006677-4799899993898---3789999998612-584898
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL-LNAADVSILCLPD---VASLEIIQLIKKN-GINSRI   78 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~-~~~~Divf~a~p~---~~s~~~~~~~~~~-g~~~~v   78 (311)
                      +-|-||+|-.|.++.+.|.++- .++...+.++..-++..++. ..+.++.++.++-   +...+++..+.+. |.--.+
T Consensus         8 ~lITGgs~GIG~a~a~~la~~G-~~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDil   86 (246)
T PRK05653          8 ALVTGASRGIGRAIALRLAADG-ARVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGGLDVL   86 (246)
T ss_pred             EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE
T ss_conf             9993897589999999999879-999999799999999999999659948999972899999999999999974998699


Q ss_pred             ECCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             227630355543110021000477652
Q gi|254780294|r   79 IDTSTAHRIAPGWVYGFPEMDKSQKEK  105 (311)
Q Consensus        79 id~ss~~R~~~~vpl~vPEvN~~~~~~  105 (311)
                      |.|++.+...     -+.|...+..+.
T Consensus        87 vnnAg~~~~~-----~~~~~~~~~~~~  108 (246)
T PRK05653         87 VNNAGITRDA-----LLPRMSEEDWDR  108 (246)
T ss_pred             EECCCCCCCC-----CCHHCCHHHHHH
T ss_conf             9899999998-----801399999999


No 318
>PRK05868 hypothetical protein; Validated
Probab=75.37  E-value=5.1  Score=19.34  Aligned_cols=31  Identities=10%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             907999758867899999998629972899996
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      |.||.|+|| |-.|..+--.|.++ -++++.+-
T Consensus         1 ~~kVlIvGa-GiAGlalA~~L~r~-G~~VtV~E   31 (372)
T PRK05868          1 MKTVLVSGA-SVAGTAAAYWLGRH-GYSVTMVE   31 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             999999898-88999999999858-99889995


No 319
>TIGR00232 tktlase_bact transketolase; InterPro: IPR005478     Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor.    This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity.
Probab=75.00  E-value=5.9  Score=18.95  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=15.4

Q ss_pred             CCCCEEEEEECCCCCCCCCCCHHCCCC
Q ss_conf             565026765123333561000000134
Q gi|254780294|r  137 DRYPITINAVSGYTGGGKKLISRMEQK  163 (311)
Q Consensus       137 ~~~~~~~~~~sg~sgaG~~~~~~~~~~  163 (311)
                      +-.-|.+.|.-|.+-..+++....|..
T Consensus       234 KPTlI~v~T~IGfGsp~~~g~~~~HGa  260 (675)
T TIGR00232       234 KPTLIEVKTTIGFGSPNKEGTEGVHGA  260 (675)
T ss_pred             CCCEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf             971689987750368777888667888


No 320
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=74.96  E-value=6  Score=18.92  Aligned_cols=31  Identities=10%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-------CCEEEEEEE
Q ss_conf             07999758867899999998629-------972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-------KDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-------p~~~l~~l~   33 (311)
                      ++|.|+|. |.||.+|++++.+.       ..++++.+.
T Consensus       459 i~v~l~G~-G~VG~~ll~qi~~q~~~l~~~~~i~l~v~g  496 (810)
T PRK09466        459 IGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVG  496 (810)
T ss_pred             EEEEEEEC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             77999825-728899999999999998875097379999


No 321
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=74.57  E-value=6.1  Score=18.85  Aligned_cols=39  Identities=15%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
Q ss_conf             07999758867899999998629972899996530078600
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~   42 (311)
                      .||+|+|| |+.|..--..|.+.+ .+++.+-+....|-++
T Consensus         1 ~rVai~Ga-G~AgL~~a~~La~~g-~~vt~~ea~~~~GGk~   39 (485)
T COG3349           1 MRVAIAGA-GLAGLAAAYELADAG-YDVTLYEARDRLGGKV   39 (485)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCCCCCCEE
T ss_conf             92899746-278889999998689-8539984267668613


No 322
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=74.42  E-value=6.2  Score=18.83  Aligned_cols=37  Identities=14%  Similarity=0.177  Sum_probs=27.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      +||||||+ |=.|..--..|... -.+++.+-.....|-
T Consensus       440 kKVAVIGs-GPAGLsaA~~La~~-G~~VtVFE~~~~~GG  476 (760)
T PRK12778        440 IKVAVIGS-GPAGLSFAGDMAKY-GYDVTVFEALHEIGG  476 (760)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCC
T ss_conf             98999897-78999999999977-990699805888897


No 323
>TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158   In bacteria, FtsZ , ,  is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell.    FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings.    FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants  as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm.
Probab=74.36  E-value=6.2  Score=18.82  Aligned_cols=141  Identities=16%  Similarity=0.126  Sum_probs=80.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEE---EEEEECC---------CCCCCCC------C--------------------
Q ss_conf             079997588678999999986299728---9999653---------0078600------6--------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLC---LLSIPCE---------ERHNLRY------R--------------------   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~---l~~l~s~---------~~ag~~~------~--------------------   43 (311)
                      .||.+||.=|--+=..-|+++.||.-.   +.++|-.         .+|.+++      .                    
T Consensus        18 akI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AAees~   97 (365)
T TIGR00065        18 AKIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAAEESR   97 (365)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             28999985588235899998705532237626999748378541155624135615733556767998388899989889


Q ss_pred             ---HHHHCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH-----HHCCCCCCHHHHHHCCCC
Q ss_conf             ---6774799899993------89837899999986125848982276303555431-----100210004776520496
Q gi|254780294|r   44 ---EDLLNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGW-----VYGFPEMDKSQKEKIRSA  109 (311)
Q Consensus        44 ---~~~~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v-----pl~vPEvN~~~~~~~~~~  109 (311)
                         +..+++.|.||.+      ++.+.+-=+++.+.+.|+ ..|==-+..|+++-..     .-++-++++     .-.+
T Consensus        98 d~i~~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~~Ga-LTvavVT~PF~~EG~kr~~~A~~Gl~~L~~-----~~Dt  171 (365)
T TIGR00065        98 DEIRELLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGA-LTVAVVTKPFKFEGKKRRKKAEEGLERLKQ-----AVDT  171 (365)
T ss_pred             HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCE-EEEEEECCCCCCHHHHHHHHHHHHHHHHHH-----HCCE
T ss_conf             9999970388818997258668666635789999975790-699984287410158999999987898765-----5684


Q ss_pred             EEEECCCCCCCCCHHHH-HHHHHHCCCCCCCCEEEEEECCCCCC
Q ss_conf             07725842113311247-88888503455650267651233335
Q gi|254780294|r  110 RYITNPGCYATGAIAIL-RPLRKAKLLPDRYPITINAVSGYTGG  152 (311)
Q Consensus       110 ~iIanPnC~~t~~~laL-~PL~~~~~i~~~~~~~~~~~sg~sga  152 (311)
                       +|==||=- .--+++= .||.++|..-  .-+..++++|.|.-
T Consensus       172 -~ivIPNdk-LL~v~p~~~p~~~AF~~A--D~vL~~aVkGI~el  211 (365)
T TIGR00065       172 -LIVIPNDK-LLEVVPNNLPLNDAFKVA--DDVLRRAVKGISEL  211 (365)
T ss_pred             -EEEECCHH-HHHHCCCCCCHHHHHHHH--HHHHHHHCCCHHHH
T ss_conf             -78826646-888606898889999999--99999750264788


No 324
>PRK06823 ornithine cyclodeaminase; Validated
Probab=74.26  E-value=5.9  Score=18.95  Aligned_cols=14  Identities=14%  Similarity=0.100  Sum_probs=6.2

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             13689999999987
Q gi|254780294|r  294 KGASGAAIQNMDLL  307 (311)
Q Consensus       294 KGAAgnAVQn~nlm  307 (311)
                      -|-|.|=+-.+...
T Consensus       296 vG~a~qDla~A~~V  309 (315)
T PRK06823        296 TGVAIQDVQIAKGI  309 (315)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             89799999999999


No 325
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=74.18  E-value=6.3  Score=18.79  Aligned_cols=80  Identities=16%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------------C--CCC------------------------
Q ss_conf             79997588678999999986299728999965300---------------7--860------------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------------H--NLR------------------------   41 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------------a--g~~------------------------   41 (311)
                      |+-|+|| |.-|-...+.|..--...++++.+..=               +  |+.                        
T Consensus         1 kvLllGa-GtLGc~var~L~~~GV~~it~VD~~~Vs~SN~~RQ~Lf~~~D~~~g~~Ka~aAa~~Lk~I~P~v~a~G~~l~   79 (307)
T cd01486           1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS   79 (307)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf             9799857-752069999999836985899849988556622356763666518980799999999986999830579972


Q ss_pred             -------CC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             -------06--------------67747998999938983789999998612584898227630
Q gi|254780294|r   42 -------YR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        42 -------~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~   84 (311)
                             +.              ++..++.|++|+-++.-.|+ |.|.+..+-.+..+|..+--
T Consensus        80 IPMpGH~v~~~~~~~~~~d~~~L~~LI~~HDvvFLLtDSRESR-WLPTll~a~~~Ki~InaALG  142 (307)
T cd01486          80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESR-WLPTLLSAAKNKLVINAALG  142 (307)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEEEC
T ss_conf             5789794776678999999999999998678999932660430-56789873368658996405


No 326
>TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.
Probab=73.50  E-value=6.5  Score=18.69  Aligned_cols=81  Identities=12%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CC--------------EEEEEEE----CCCCCCCCCCHHHH----------
Q ss_conf             07999758867899999998629------97--------------2899996----53007860066774----------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KD--------------LCLLSIP----CEERHNLRYREDLL----------   47 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~--------------~~l~~l~----s~~~ag~~~~~~~~----------   47 (311)
                      +||||+|. |++..-|++=++..      ++              -+|..++    .++..|+.+++..|          
T Consensus         1 IrVaIvGv-GncASslvqGieyyk~~~~~~~v~Glm~~~iggy~v~DIeiVaafDVD~~KVGkdlseAi~~~pN~~~~~~   79 (351)
T TIGR03450         1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA   79 (351)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCC
T ss_conf             95999913-07899999999999638964566773002247867444699999732704047769999740689864217


Q ss_pred             ------------------------------------------CCCCEEEECCCCH---HHHHHHHHHHHCCCCEEEECCC
Q ss_conf             ------------------------------------------7998999938983---7899999986125848982276
Q gi|254780294|r   48 ------------------------------------------NAADVSILCLPDV---ASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        48 ------------------------------------------~~~Divf~a~p~~---~s~~~~~~~~~~g~~~~vid~s   82 (311)
                                                                .++|+++.-+|-+   .++-|+..+.++|+.  .|..-
T Consensus        80 dvp~~gv~V~~G~~lDG~~~~~~~~i~~~~~~~~Dvv~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~a--FVN~i  157 (351)
T TIGR03450        80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVA--FVNAL  157 (351)
T ss_pred             CCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--EECCC
T ss_conf             8888798885568756534455505666533536699999862874689715768669999999988984981--78335


Q ss_pred             CCH
Q ss_conf             303
Q gi|254780294|r   83 TAH   85 (311)
Q Consensus        83 s~~   85 (311)
                      ..|
T Consensus       158 P~f  160 (351)
T TIGR03450       158 PVF  160 (351)
T ss_pred             CHH
T ss_conf             410


No 327
>pfam06408 consensus
Probab=73.15  E-value=6.6  Score=18.64  Aligned_cols=78  Identities=21%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCC-CC--------CCCC-----CH--------HHHCCC---CEEE
Q ss_conf             7999758867899999998629---972899996530-07--------8600-----66--------774799---8999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEE-RH--------NLRY-----RE--------DLLNAA---DVSI   54 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~-~a--------g~~~-----~~--------~~~~~~---Divf   54 (311)
                      ||-+||- |-+||-++-||.+|   +..+++.+.-.. ..        |-++     ..        ..+++.   |+.+
T Consensus         3 ~Iv~iGf-GSIgq~~LPLl~rH~~~~~~~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv   81 (471)
T pfam06408         3 PILMIGF-GSIGRGTLPLIERHFKFDRSNIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV   81 (471)
T ss_pred             CEEEECC-CHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE
T ss_conf             7799875-716742067888760788789899767875456677875697688614587889999999862677788799


Q ss_pred             ECCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             93898378999999861258489822763
Q gi|254780294|r   55 LCLPDVASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        55 ~a~p~~~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      --.-+--|.+....+.+.|  +.++|.|-
T Consensus        82 nLSvniss~~ii~~C~e~G--vlYldT~i  108 (471)
T pfam06408        82 NLSVDTSSLDLMRLCREHG--VLYVDTVV  108 (471)
T ss_pred             EEECCCCHHHHHHHHHHHC--CEEEECCC
T ss_conf             8011578899999999809--87755440


No 328
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=72.62  E-value=6  Score=18.93  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=28.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC
Q ss_conf             7999758867899999998629--9728999965300
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER   37 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~   37 (311)
                      +|-|||+ |+.|....+.|.++  |..+++++.-++.
T Consensus         1 hiVIvGg-G~aG~~~a~~L~~~~~~~~~ItLId~~~~   36 (364)
T TIGR03169         1 HLVLIGG-GHTHALVLRRWAMKPLPGVRVTLINPSST   36 (364)
T ss_pred             CEEEECC-HHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf             9999996-09999999997041789983999999886


No 329
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate  disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=72.48  E-value=6.9  Score=18.54  Aligned_cols=111  Identities=15%  Similarity=0.160  Sum_probs=55.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHC-C---CCEEEEEEECC--CC--------------CCCCC-------CHHHHCCCCEEE
Q ss_conf             0799975886789999999862-9---97289999653--00--------------78600-------667747998999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQ-R---KDLCLLSIPCE--ER--------------HNLRY-------REDLLNAADVSI   54 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~-h---p~~~l~~l~s~--~~--------------ag~~~-------~~~~~~~~Divf   54 (311)
                      +||+|+||-+..-..+++=|.. .   +..++.+..=.  ++              .|..+       .++.+.++|+||
T Consensus         1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi   80 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF   80 (419)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEE
T ss_conf             97999897466558999999845434898889998998599999999999999996099808999679999836999999


Q ss_pred             ECC--CCHHHHHHH-HHHHHCCCCEEEE--CC---CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             938--983789999-9986125848982--27---630355543110021000477652049607725842
Q gi|254780294|r   55 LCL--PDVASLEII-QLIKKNGINSRII--DT---STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        55 ~a~--p~~~s~~~~-~~~~~~g~~~~vi--d~---ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      .+.  +...++..- ..-.+.|    ++  |.   ++-||----+|..+ |+-.+-.+.-++++++---|.
T Consensus        81 ~~irvGg~~~r~~De~Ip~kyG----vigQET~G~GG~~~alRtiP~~l-~ia~~i~e~cP~AwliNytNP  146 (419)
T cd05296          81 TQIRVGGLEARALDERIPLKHG----VIGQETTGAGGFAKALRTIPVIL-DIAEDVEELAPDAWLINFTNP  146 (419)
T ss_pred             EEEEECCCCHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEECCCH
T ss_conf             9873379307677654387649----76534767479998762289999-999999986998389973787


No 330
>PRK06046 alanine dehydrogenase; Validated
Probab=72.31  E-value=6.9  Score=18.52  Aligned_cols=12  Identities=8%  Similarity=0.133  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             136899999999
Q gi|254780294|r  294 KGASGAAIQNMD  305 (311)
Q Consensus       294 KGAAgnAVQn~n  305 (311)
                      -|-|.+=+-.+.
T Consensus       297 vG~a~~Dla~a~  308 (326)
T PRK06046        297 TGLAIQDVATAH  308 (326)
T ss_pred             CCHHHHHHHHHH
T ss_conf             895999999999


No 331
>PRK06217 hypothetical protein; Validated
Probab=72.10  E-value=3.6  Score=20.26  Aligned_cols=31  Identities=19%  Similarity=0.301  Sum_probs=26.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEE
Q ss_conf             907999758867899999998629---9728999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLS   31 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~   31 (311)
                      |.||-|+|++|-.=..|-+.|.++   |++++--
T Consensus         1 m~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~   34 (185)
T PRK06217          1 MMRIHITGASGSGTTTLGAALAEALDLPHLDTDD   34 (185)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf             9679997899887899999999975989686455


No 332
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=71.80  E-value=7.1  Score=18.45  Aligned_cols=77  Identities=14%  Similarity=0.292  Sum_probs=49.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEE-CCCCCCCCCC--------H-----HHHCCCCEEEECCCCHHHH--
Q ss_conf             0799975886789999999862997--2899996-5300786006--------6-----7747998999938983789--
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKD--LCLLSIP-CEERHNLRYR--------E-----DLLNAADVSILCLPDVASL--   63 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~--~~l~~l~-s~~~ag~~~~--------~-----~~~~~~Divf~a~p~~~s~--   63 (311)
                      .||.|+|+ |-.|+++.+-|.+||.  +++..+. .+.+.+....        +     ..-.++|-|++|+|.....  
T Consensus       126 rrvlIIG~-g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~~~~~p~lg~~~~l~~~i~~~~ideViIa~p~~~~~~~  204 (445)
T TIGR03025       126 RRVLIVGT-GELAEELAAALSRNPDLGYRVVGFVDDRPEDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI  204 (445)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf             23999908-48999999999828468848999977875444556788601889999999997699889996586776899


Q ss_pred             -HHHHHHHHCCCCEEEE
Q ss_conf             -9999986125848982
Q gi|254780294|r   64 -EIIQLIKKNGINSRII   79 (311)
Q Consensus        64 -~~~~~~~~~g~~~~vi   79 (311)
                       +....+...|..++++
T Consensus       205 ~~~l~~~~~~~v~v~~i  221 (445)
T TIGR03025       205 LELLLQLSDLGVDVRLV  221 (445)
T ss_pred             HHHHHHHHHCCCEEEEE
T ss_conf             99999987559789995


No 333
>PRK07432 5'-methylthioadenosine phosphorylase; Provisional
Probab=71.71  E-value=4.1  Score=19.93  Aligned_cols=89  Identities=19%  Similarity=0.209  Sum_probs=48.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHHH-HHHHHHHCC
Q ss_conf             799975886789999999862997289999653007860066774799899993--------89837899-999986125
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASLE-IIQLIKKNG   73 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~~-~~~~~~~~g   73 (311)
                      ||||+|.||+-..   ..|.+..++++..-.+..|.-  +..-.+++.+++|++        .|+++--. -.-.+.+.|
T Consensus         5 kIGIIgGSGL~~l---~~l~~~~~~~v~Tp~G~ps~~--l~~G~l~g~~V~fL~RHGr~H~~~P~~inyRANI~ALk~LG   79 (290)
T PRK07432          5 KIGIIGGSGLYKM---EALKDVEEVQLETPFGSPSDA--LIVGTLDGVRVAFLARHGRNHHLLPTELPFRANIYAMKQLG   79 (290)
T ss_pred             CEEEEECCCCCCH---HHCCCCEEEEEECCCCCCCCC--EEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
T ss_conf             2999907776743---335775189811889899776--79999999999998478998985862664177799998669


Q ss_pred             CCEEEECCCCCHHHHHHHH---HCCCC
Q ss_conf             8489822763035554311---00210
Q gi|254780294|r   74 INSRIIDTSTAHRIAPGWV---YGFPE   97 (311)
Q Consensus        74 ~~~~vid~ss~~R~~~~vp---l~vPE   97 (311)
                      +. .+|.-+++=-+.++++   +++|.
T Consensus        80 v~-~ii~tnAvGsL~~~~~PGdlvi~d  105 (290)
T PRK07432         80 VE-YLISASAVGSLKEEAKPLDMVVPD  105 (290)
T ss_pred             CC-EEEEECCEEECCCCCCCCCEEECC
T ss_conf             85-699961365236668997288404


No 334
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275   This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=71.62  E-value=4.6  Score=19.61  Aligned_cols=41  Identities=15%  Similarity=0.115  Sum_probs=33.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEEC--CC--CCCCCCC
Q ss_conf             07999758867899999998629972-8999965--30--0786006
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPC--EE--RHNLRYR   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s--~~--~ag~~~~   43 (311)
                      +||.|+|| |+||..---+|++---. |+.++.=  =+  -.||.++
T Consensus         2 kKisvIGA-GfvGaTTAf~lA~KeLard~VLlDiPqvEg~pqGKALD   47 (308)
T TIGR01763         2 KKISVIGA-GFVGATTAFLLAEKELARDVVLLDIPQVEGVPQGKALD   47 (308)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHH
T ss_conf             55899706-86125899999867406716898505558688863322


No 335
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=71.61  E-value=7.2  Score=18.42  Aligned_cols=67  Identities=13%  Similarity=0.159  Sum_probs=42.7

Q ss_pred             CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             86789999999862997289999653007860066774799899993898378999999861258489822763
Q gi|254780294|r   10 HGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        10 TG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      +.-.-.+..+.|.++  |++........... ...+...++|.++.......+.+...++  .  ..++|.+.+
T Consensus         8 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~--p--~LKlIa~~~   74 (324)
T COG1052           8 TRKLPPEVLERLKEK--FEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKL--P--GLKLIATRS   74 (324)
T ss_pred             CCCCCHHHHHHHCCC--EEEEEECCCCCCCC-HHHHHHCCCCEEEECCCCCCCHHHHHHC--C--CCEEEEEEC
T ss_conf             355797899873135--78999315776530-5788864786999726787589999748--8--936999924


No 336
>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.49  E-value=7.2  Score=18.40  Aligned_cols=86  Identities=17%  Similarity=0.268  Sum_probs=50.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------------------------------HHH
Q ss_conf             9079997588678999999986299728999965300786006----------------------------------677
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------------------------------EDL   46 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------------------------------~~~   46 (311)
                      |.+|-++|+ |-|.-.|--.|..|-..+|-.+--.+..++++.                                  ...
T Consensus         4 m~~vLllGt-GpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~   82 (431)
T COG4408           4 MLPVLLLGT-GPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA   82 (431)
T ss_pred             CCCEEEEEC-CCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCEEHHHHHHHHHHH
T ss_conf             532357605-7177899999986057154035798730678999982498599972668888641765552887419875


Q ss_pred             HCCCCEEEECCCCHHHHHHH----------------------------HHHHHCCCCEEEECCCCCHHH
Q ss_conf             47998999938983789999----------------------------998612584898227630355
Q gi|254780294|r   47 LNAADVSILCLPDVASLEII----------------------------QLIKKNGINSRIIDTSTAHRI   87 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~~~----------------------------~~~~~~g~~~~vid~ss~~R~   87 (311)
                      ..+-|-+++|.|++.=.+..                            ....+.|+++-||+.|+.|--
T Consensus        83 ~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~d  151 (431)
T COG4408          83 VGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYAD  151 (431)
T ss_pred             HCHHHEEEEEEECHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHCCC
T ss_conf             140446888951088999996389868515547999624456337999987660898069975011154


No 337
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=71.36  E-value=7.3  Score=18.38  Aligned_cols=84  Identities=18%  Similarity=0.222  Sum_probs=52.4

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE---CCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             79997588678999999986299728999965300786006677479989999---389837899999986125848982
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL---CLPDVASLEIIQLIKKNGINSRII   79 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~---a~p~~~s~~~~~~~~~~g~~~~vi   79 (311)
                      +|.|||+.----..+.++++++-.-.+.+-.+.+...+++ +....++|+|++   +..|.....+-..+...|..++..
T Consensus         1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l-~~~i~~aDlVI~~td~vsH~~~~~vK~~akk~~~p~v~~   79 (96)
T pfam10087         1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKI-PALLKKADLVIVFTDCVSHDAMWRVKEEAKKRGIPVVFS   79 (96)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH-HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             9999958556789999999983998999658987335567-750589888999717668799999999999849978997


Q ss_pred             CCCCCHHH
Q ss_conf             27630355
Q gi|254780294|r   80 DTSTAHRI   87 (311)
Q Consensus        80 d~ss~~R~   87 (311)
                      ..++.=.+
T Consensus        80 ~s~s~~~l   87 (96)
T pfam10087        80 RSRSLSAL   87 (96)
T ss_pred             CCCCHHHH
T ss_conf             68749999


No 338
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=71.30  E-value=7.3  Score=18.38  Aligned_cols=33  Identities=21%  Similarity=0.328  Sum_probs=27.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             90799975886789999999862997289999653
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |+.|+|+|| |.+|..+=-.|.++. .++..+-..
T Consensus         2 ~~dV~IvGa-G~aGl~lA~~L~~~G-~~V~liE~~   34 (387)
T COG0654           2 MLDVAIVGA-GPAGLALALALARAG-LDVTLLERA   34 (387)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECC
T ss_conf             854999997-899999999998289-968999077


No 339
>PRK06753 hypothetical protein; Provisional
Probab=71.21  E-value=6.6  Score=18.67  Aligned_cols=30  Identities=23%  Similarity=0.290  Sum_probs=24.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             07999758867899999998629972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      .||+|||| |.+|..+--.|.++ .++++.+-
T Consensus         1 mkV~IVGa-GiaGL~~A~~L~~~-G~~v~V~E   30 (373)
T PRK06753          1 MKIAIIGA-GIGGLTAAALLQEQ-GHTVKVFE   30 (373)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             98999994-58999999999977-99999988


No 340
>TIGR01408 Ube1 ubiquitin-activating enzyme E1; InterPro: IPR000011   The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation , , . Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade . The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction.; GO: 0008641 small protein activating enzyme activity, 0006464 protein modification process, 0006512 ubiquitin cycle.
Probab=70.97  E-value=7.4  Score=18.34  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=45.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-----C-CEEEE---------------EEECCCCCCC--------------------
Q ss_conf             07999758867899999998629-----9-72899---------------9965300786--------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-----K-DLCLL---------------SIPCEERHNL--------------------   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-----p-~~~l~---------------~l~s~~~ag~--------------------   40 (311)
                      .+|-.||+ |+.|-||++=++-=     . ...|+               +|.-.+..||                    
T Consensus       432 l~~FlVG~-GAiGCEmLKN~AlmGV~tg~e~G~itVTD~D~IEKSNLnRQFLFRp~~igk~KS~~Aa~A~~~iNp~~~Gk  510 (1033)
T TIGR01408       432 LKVFLVGA-GAIGCEMLKNLALMGVATGKEKGKITVTDDDLIEKSNLNRQFLFRPRDIGKAKSEVAADAVAVINPRLKGK  510 (1033)
T ss_pred             CCEEEEEC-CHHHHHHHHHHHHHCEECCCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
T ss_conf             77258715-45678899878871300156665357626751210256511124742035302568988898846776531


Q ss_pred             --------------CCCHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             --------------0066774799899993898378999999
Q gi|254780294|r   41 --------------RYREDLLNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus        41 --------------~~~~~~~~~~Divf~a~p~~~s~~~~~~   68 (311)
                                    -|.|+++++.|+|.-||++-.+|-|+-.
T Consensus       511 I~a~~nrVgpetE~if~DeF~ekl~vv~nALDNVeAR~YVDs  552 (1033)
T TIGR01408       511 IEAYQNRVGPETETIFDDEFYEKLDVVVNALDNVEARLYVDS  552 (1033)
T ss_pred             HHHHHCCCCCCCCCCCCCHHEECCEEEEECCCCCHHHHHHHH
T ss_conf             243322506566764373010034126750102001122212


No 341
>KOG1221 consensus
Probab=70.21  E-value=7.7  Score=18.23  Aligned_cols=38  Identities=16%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCCC
Q ss_conf             799975886789999999862-99728999965300786
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQ-RKDLCLLSIPCEERHNL   40 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~-hp~~~l~~l~s~~~ag~   40 (311)
                      .|-|-||||+.|..+++-|.. .|.+.-..+.=+.+.|+
T Consensus        14 ~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~   52 (467)
T KOG1221          14 TIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGK   52 (467)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC
T ss_conf             599972763457899999985076765699998347898


No 342
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=69.99  E-value=7.8  Score=18.20  Aligned_cols=17  Identities=24%  Similarity=0.161  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             13689999999987238
Q gi|254780294|r  294 KGASGAAIQNMDLLLSS  310 (311)
Q Consensus       294 KGAAgnAVQn~nlm~g~  310 (311)
                      -|-|.|=+-.+++.+-.
T Consensus       282 vG~a~qDla~A~~v~~~  298 (302)
T PRK06407        282 MGIGLEDIAAGYLVLKN  298 (302)
T ss_pred             CCHHHHHHHHHHHHHHH
T ss_conf             88399999999999996


No 343
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=69.87  E-value=7.9  Score=18.18  Aligned_cols=55  Identities=13%  Similarity=0.136  Sum_probs=39.9

Q ss_pred             CEEEEECCCCHHHHHHHHH-HHCC-CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCH
Q ss_conf             0799975886789999999-8629-972899996530078600667747998999938983
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSR-IVQR-KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDV   60 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~l-L~~h-p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~   60 (311)
                      +|+.||-.+|+.=.+|++. |.+. |..++....|.+.    +....+.++|++|+-.|-.
T Consensus         1 ~~vliVC~~G~gts~lL~~kl~~~fp~i~~i~~~s~~~----~~~~~~~~~DlIiSTi~l~   57 (85)
T cd05568           1 KKALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRE----LEEVDLDDYDLIISTVPLE   57 (85)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH----HHHCCCCCCCEEEEECCCC
T ss_conf             93999999998999999999998789967999750999----8743323687899941266


No 344
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=69.34  E-value=8.1  Score=18.11  Aligned_cols=69  Identities=19%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHH
Q ss_conf             90799975886789999999862997289999653007860066774799899993--898378999999861
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKK   71 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~   71 (311)
                      |+||.|+----++-.-|.++|...|.+++...+++......  ...-...|++++-  +|..-..+....+.+
T Consensus         1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~--~~~~~~~dvvllD~~mp~~~g~~~~~~l~~   71 (196)
T PRK10360          1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALA--GLPGRGVQVCICDISMPDISGLELLSQLPK   71 (196)
T ss_pred             CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHH--HHHHCCCCEEEECCCCCCCCCHHHHHHHHC
T ss_conf             91999987979999999999812999599999899999999--887449999998788788620779999843


No 345
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971   This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=69.17  E-value=8.1  Score=18.09  Aligned_cols=33  Identities=24%  Similarity=0.345  Sum_probs=27.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC----CEEEEEEECCC
Q ss_conf             79997588678999999986299----72899996530
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK----DLCLLSIPCEE   36 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp----~~~l~~l~s~~   36 (311)
                      .|+|||+ |+||..|=--|...+    ...+.++....
T Consensus         1 Di~IvGg-G~VG~~lA~aL~~~~~~~~~L~~~l~e~~~   37 (445)
T TIGR01988         1 DIVIVGG-GMVGLALALALASSGSRLKGLKVALIEAQP   37 (445)
T ss_pred             CEEEECC-CHHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf             9688847-388999999984186312473179960521


No 346
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=68.86  E-value=8.2  Score=18.05  Aligned_cols=24  Identities=13%  Similarity=0.314  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             378999999861258489822763
Q gi|254780294|r   60 VASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        60 ~~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      -+.-|++..+...|.++.+|+.+.
T Consensus       168 ~ig~E~A~~~~~lG~~Vtiie~~~  191 (441)
T PRK08010        168 YIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             HHHHHHHHHHHHCCCEEEEEECCC
T ss_conf             899999999997598788970467


No 347
>COG3400 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.76  E-value=8.1  Score=18.11  Aligned_cols=55  Identities=11%  Similarity=0.106  Sum_probs=35.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCC
Q ss_conf             9079997588678999999986299---7289999653007860066774799899993898
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERHNLRYREDLLNAADVSILCLPD   59 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~   59 (311)
                      |.+|+|+|- |-+..++++++..|.   +|.....--+++-..+   ...+.+|+.+|.+.+
T Consensus         1 m~~I~iI~d-Gi~Ak~fLe~v~~~~~~~~f~~vv~~~qe~~~~~---~~~e~~~fh~fdaTs   58 (471)
T COG3400           1 MKKIAIILD-GIVAKNFLELVLRHYSNHNFYIVVVKNQESLIPK---NYPETFAFHCFDATS   58 (471)
T ss_pred             CCEEEEEEE-CHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCC---CCCCEEEEEEECCCC
T ss_conf             960799972-3889999999999862733999874025431423---583027999937743


No 348
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=67.59  E-value=8.8  Score=17.89  Aligned_cols=30  Identities=23%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEE
Q ss_conf             07999758867899999998629------97289999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSI   32 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l   32 (311)
                      ++|.|+|. |.||.+|++++.+.      ..++++..
T Consensus       466 i~i~l~G~-G~vG~~ll~qi~~q~~~l~~~~i~l~v~  501 (817)
T PRK09436        466 IDVFVIGV-GGVGGALLEQIKRQQQWLKKKHIDLRVC  501 (817)
T ss_pred             EEEEEEEC-CHHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_conf             77999844-7287999999999999885269449999


No 349
>KOG2012 consensus
Probab=67.42  E-value=4.4  Score=19.74  Aligned_cols=66  Identities=12%  Similarity=0.178  Sum_probs=44.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-------CCEEE-------------EEEECCCCCCC---------------------
Q ss_conf             07999758867899999998629-------97289-------------99965300786---------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-------KDLCL-------------LSIPCEERHNL---------------------   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-------p~~~l-------------~~l~s~~~ag~---------------------   40 (311)
                      .|+-+||| |+.|-||++-++--       -.+.+             .+|.-....|+                     
T Consensus       431 ~~~FlVGa-GAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a  509 (1013)
T KOG2012         431 QKVFLVGA-GAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIA  509 (1013)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             84899736-31517998766650120179872688451166431543101024544685077899999974297715521


Q ss_pred             -----------CCCHHHHCCCCEEEECCCCHHHHHHHHH
Q ss_conf             -----------0066774799899993898378999999
Q gi|254780294|r   41 -----------RYREDLLNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus        41 -----------~~~~~~~~~~Divf~a~p~~~s~~~~~~   68 (311)
                                 -+.+++|++.|+|--||++-.++.|+..
T Consensus       510 ~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~  548 (1013)
T KOG2012         510 LQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDR  548 (1013)
T ss_pred             HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             320468652131446677665788775302245654122


No 350
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=67.33  E-value=8.9  Score=17.86  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=24.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEE
Q ss_conf             07999758867899999998629-97289999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSI   32 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l   32 (311)
                      .||-|.||++=.|+++.+.|.++ +...+...
T Consensus         1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~   32 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLETYPDATVHAT   32 (235)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             97999755639999999999856998099997


No 351
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=67.01  E-value=9  Score=17.82  Aligned_cols=34  Identities=21%  Similarity=0.274  Sum_probs=26.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCC
Q ss_conf             07999758867899999998629-972899996530
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEE   36 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~   36 (311)
                      .||.|||+ |..|.....-|.++ |..++..+..+.
T Consensus         1 MkvVIIG~-G~AG~saA~~l~~~~~~~~I~v~e~~~   35 (443)
T PRK09564          1 MKIIIIGG-TAAGTSAAAKAKRLNKELEIVVYEKTD   35 (443)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf             96999996-099999999998149399999994889


No 352
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322    These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=66.54  E-value=5.4  Score=19.17  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=19.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             07999758867899999998629
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      .||.|||| ||.+-||-=+|+.-
T Consensus       182 ~~~v~vGA-GYIAvELAGvLh~L  203 (475)
T TIGR01421       182 KRVVIVGA-GYIAVELAGVLHGL  203 (475)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHC
T ss_conf             71799907-38988888887312


No 353
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=66.50  E-value=9.2  Score=17.76  Aligned_cols=86  Identities=9%  Similarity=0.158  Sum_probs=56.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHHC
Q ss_conf             0799975886789999999862997289999653007---86--------------00----------------667747
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLLN   48 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~~   48 (311)
                      .||||||| |.-|.-+-..+..+ -+++++..-+..+   |.              ++                +-+.+.
T Consensus       314 ~~v~ViGa-G~MG~GIA~~~a~a-G~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~~l~  391 (715)
T PRK11730        314 KQAAVLGA-GIMGGGIAYQSASK-GVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYAGFK  391 (715)
T ss_pred             CEEEEECC-CCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHC
T ss_conf             27999787-71079999999957-99579997899999999999999999998648998799999995687415402433


Q ss_pred             CCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             9989999389837899--9999861-258489822763035554
Q gi|254780294|r   49 AADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        49 ~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      ++|+|+=|.+....-+  ....+.+ ...++..-+|+|....+.
T Consensus       392 ~~DlVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl~i~~  435 (715)
T PRK11730        392 DVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL  435 (715)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf             58889985436588999999999865587538851576577899


No 354
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=66.08  E-value=9.4  Score=17.70  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=24.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             07999758867899999998629972899996530078
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN   39 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag   39 (311)
                      .||||||| |=.|..--..|... -.+++.+-.....|
T Consensus       551 KKVAVIGs-GPAGLaAA~~Lar~-Gh~VTVFEk~~~~G  586 (1032)
T PRK09853        551 HPVAVIGA-GPAGLAAGYFLARA-GHPVTVFEREENAG  586 (1032)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf             97999896-88999999999977-99369981589788


No 355
>PRK12831 putative oxidoreductase; Provisional
Probab=65.79  E-value=9.5  Score=17.67  Aligned_cols=37  Identities=14%  Similarity=0.191  Sum_probs=26.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC
Q ss_conf             079997588678999999986299728999965300786
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL   40 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~   40 (311)
                      .||||||| |=-|..--.-|... -.+++.+-.....|-
T Consensus       141 kkVAVIGs-GPAGLsaA~~La~~-G~~VtVfE~~~~~GG  177 (464)
T PRK12831        141 KKVAVIGS-GPAGLTCAGDLAKK-GYDVTIFEALHEPGG  177 (464)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEECCCCCCCC
T ss_conf             98999897-68999999999976-991799827888898


No 356
>KOG2742 consensus
Probab=65.68  E-value=3.3  Score=20.50  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=59.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC----------C----CCCHHH-HCCCCEEEECCCCHHHHHHHHH
Q ss_conf             999758867899999998629972899996530078----------6----006677-4799899993898378999999
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN----------L----RYREDL-LNAADVSILCLPDVASLEIIQL   68 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag----------~----~~~~~~-~~~~Divf~a~p~~~s~~~~~~   68 (311)
                      |||+|. |.--+.++-+|.+-| |++.++.++.++-          +    ++++.. -.++|+++.++|.....+++.+
T Consensus         5 v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~~ea~a~aa~~~v~~~t~~~deiLl~~~vdlv~i~lpp~~~~eI~~k   82 (367)
T KOG2742           5 VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTKTEAKAKAAEMNVRKYTSRLDEILLDQDVDLVCISLPPPLHAEIVVK   82 (367)
T ss_pred             EEEECC-CHHHHHHHHHHHHCC-CHHHHHHCHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCEEEECCCCCCCEEEEEC
T ss_conf             157415-714766524656335-007656341456777754133211105530054436774436751687401045640


Q ss_pred             HHHCCCCEEEECCCC----CHHHHHH
Q ss_conf             861258489822763----0355543
Q gi|254780294|r   69 IKKNGINSRIIDTST----AHRIAPG   90 (311)
Q Consensus        69 ~~~~g~~~~vid~ss----~~R~~~~   90 (311)
                      ..-.|. .++.+.-.    ++||-..
T Consensus        83 al~~Gk-~Vvcek~a~~~d~~k~~~~  107 (367)
T KOG2742          83 ALGIGK-HVVCEKPATNLDAAKMVVA  107 (367)
T ss_pred             CCCCCC-EEEECCCCCCHHHHHHHHH
T ss_conf             235774-0785267754224566787


No 357
>PRK08931 5'-methylthioadenosine phosphorylase; Provisional
Probab=65.34  E-value=2.7  Score=21.05  Aligned_cols=90  Identities=16%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHHH-HHHHH
Q ss_conf             907--99975886789999999862997289999653007860066774799899993--------89837899-99998
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASLE-IIQLI   69 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~~-~~~~~   69 (311)
                      |.|  |||+|.||+-.-   ..|.+....++..=.++.|.  ++..-.+++.+++|++        .||.+--. -.-.+
T Consensus         1 m~~~~IgIIGGSGly~l---~~l~~~~~~~v~Tp~G~pS~--~i~~G~i~g~~v~fL~RHG~~H~i~P~~InyRANI~AL   75 (289)
T PRK08931          1 MTKAVLGIIGGSGVYDI---DGLEDARWERVESPWGEPSD--ALLFGRLGGVPMVFLPRHGRGHRLSPSDINYRANIDAL   75 (289)
T ss_pred             CCCCEEEEECCCCCCCH---HHCCCCCEEEEECCCCCCCC--CEEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHH
T ss_conf             98765999827775755---44667645886799989866--56999989989999817899999896557718999999


Q ss_pred             HHCCCCEEEECCCCCHHHHHHHH---HCCC
Q ss_conf             61258489822763035554311---0021
Q gi|254780294|r   70 KKNGINSRIIDTSTAHRIAPGWV---YGFP   96 (311)
Q Consensus        70 ~~~g~~~~vid~ss~~R~~~~vp---l~vP   96 (311)
                      .+.|.. .+|.-++.=-+.++++   +++|
T Consensus        76 k~LGV~-~Iia~nAvGsL~~~~~PGdlVi~  104 (289)
T PRK08931         76 KRAGVT-DLVSLSACGSFKEELPPGTFVIV  104 (289)
T ss_pred             HHCCCC-EEEEECCEEECCCCCCCCCEEEC
T ss_conf             985997-89982236660567899978711


No 358
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel  domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=64.92  E-value=9.9  Score=17.57  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=32.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHH
Q ss_conf             079997588678999999986299728999965300786006677479989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~   64 (311)
                      .++.++|+ |-+|+-+-++|...-.-++....+                |+++-|++.+.-..
T Consensus        24 ~~v~v~G~-G~vg~~ia~ll~~~~~k~V~~~d~----------------Di~v~~t~~~~~~~   69 (86)
T cd05191          24 KTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR----------------DILVTATPAGVPVL   69 (86)
T ss_pred             CEEEEECC-CCHHHHHHHHHHHHCCCEEEECCC----------------CEEEECCCCCCCCH
T ss_conf             58999778-604289999999817970787155----------------52886057787127


No 359
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=64.12  E-value=10  Score=17.48  Aligned_cols=74  Identities=12%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCC---CCHHHHCCCCEEEECCCC----HHHHHHHH
Q ss_conf             0799975886789999999862997289999653007-------860---066774799899993898----37899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLR---YREDLLNAADVSILCLPD----VASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~---~~~~~~~~~Divf~a~p~----~~s~~~~~   67 (311)
                      .||+|+|. |-.|.-..++|.++ ..++.....+...       |..   +.+..+.++|.++.+-+=    ......+.
T Consensus        10 k~v~v~Gl-G~sG~s~a~~L~~~-G~~V~~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~~~~v~   87 (457)
T PRK01390         10 KTVALFGL-GGSGLATARALKAG-GAEVIAWDDNPDSVAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKPHWTVD   87 (457)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH
T ss_conf             98999943-69999999999978-99799993992066899875983145541232038789999988865667319999


Q ss_pred             HHHHCCCCEEEE
Q ss_conf             986125848982
Q gi|254780294|r   68 LIKKNGINSRII   79 (311)
Q Consensus        68 ~~~~~g~~~~vi   79 (311)
                      ++.+.|.  .|+
T Consensus        88 ~a~~~gi--~v~   97 (457)
T PRK01390         88 LARAAGV--EVI   97 (457)
T ss_pred             HHHHCCC--EEE
T ss_conf             9998599--186


No 360
>KOG1496 consensus
Probab=63.93  E-value=10  Score=17.45  Aligned_cols=68  Identities=19%  Similarity=0.370  Sum_probs=47.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC----C--CEEEEEEECCCCCCC------CC----------------CHHHHCCCCEE
Q ss_conf             07999758867899999998629----9--728999965300786------00----------------66774799899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR----K--DLCLLSIPCEERHNL------RY----------------REDLLNAADVS   53 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h----p--~~~l~~l~s~~~ag~------~~----------------~~~~~~~~Div   53 (311)
                      +||.+-||.|..|--|+-.+.+-    |  -+.|+++......+-      ++                ..+.|+++|++
T Consensus         5 irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~a   84 (332)
T KOG1496           5 IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDVA   84 (332)
T ss_pred             EEEEEECCCCHHHHHHHHHHCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEE
T ss_conf             47875245520267878987274165699864899607815778888788777752316777654267766641567679


Q ss_pred             EE--CCCCHHHHHHHHHH
Q ss_conf             99--38983789999998
Q gi|254780294|r   54 IL--CLPDVASLEIIQLI   69 (311)
Q Consensus        54 f~--a~p~~~s~~~~~~~   69 (311)
                      |+  +.|....++-...+
T Consensus        85 ilvGa~PR~eGMERkDll  102 (332)
T KOG1496          85 ILVGAMPRREGMERKDLL  102 (332)
T ss_pred             EEECCCCCCCCCHHHHHH
T ss_conf             896366665661166687


No 361
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=63.89  E-value=10  Score=17.45  Aligned_cols=88  Identities=15%  Similarity=0.153  Sum_probs=57.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC------------CCCCCC-----------------------HH
Q ss_conf             079997588678999999986299-728999965300------------786006-----------------------67
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER------------HNLRYR-----------------------ED   45 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~------------ag~~~~-----------------------~~   45 (311)
                      .||.|+|-=|.-+-.+-++....+ ..++..+-....            .|+++.                       .+
T Consensus         1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~~~I~~   80 (304)
T cd02201           1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIKE   80 (304)
T ss_pred             CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             94699987881299999999839998559999087999845999827970876568898888847999999988999999


Q ss_pred             HHCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf             74799899993------8983789999998612584898227630355543
Q gi|254780294|r   46 LLNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG   90 (311)
Q Consensus        46 ~~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~   90 (311)
                      .+++.|++|.+      ++.+.+.-.+..+++.|. ..|-=-+-.|+++-.
T Consensus        81 ~l~~~d~vfi~AGmGGGTGTGaaPviA~~Ake~g~-LtvavVT~PF~~EG~  130 (304)
T cd02201          81 ALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGA-LTVAVVTKPFSFEGK  130 (304)
T ss_pred             HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEECCHHHHHH
T ss_conf             97368769999425798663178999998866798-599999678577528


No 362
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=63.61  E-value=10  Score=17.42  Aligned_cols=57  Identities=21%  Similarity=0.160  Sum_probs=35.1

Q ss_pred             CCEEEEECCCCHHHH-HHHHHHHCC---CCEEEEEEECCCCCCC---------------CC-------CHHHHCCCCEEE
Q ss_conf             907999758867899-999998629---9728999965300786---------------00-------667747998999
Q gi|254780294|r    1 MYKIFIDGEHGTTGL-KIRSRIVQR---KDLCLLSIPCEERHNL---------------RY-------REDLLNAADVSI   54 (311)
Q Consensus         1 M~kVaIvGATG~vG~-~li~lL~~h---p~~~l~~l~s~~~ag~---------------~~-------~~~~~~~~Divf   54 (311)
                      +.||+|+||-.-.=- .+.-.|...   |..++.+..-++..-+               .+       .++.++++|+|+
T Consensus         3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi   82 (442)
T COG1486           3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI   82 (442)
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEE
T ss_conf             73699989975314799998984175577666999838778899999999999996399858999458999844798899


Q ss_pred             ECC
Q ss_conf             938
Q gi|254780294|r   55 LCL   57 (311)
Q Consensus        55 ~a~   57 (311)
                      .+.
T Consensus        83 ~~~   85 (442)
T COG1486          83 TQI   85 (442)
T ss_pred             EEE
T ss_conf             987


No 363
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=63.39  E-value=11  Score=17.39  Aligned_cols=86  Identities=8%  Similarity=0.060  Sum_probs=44.3

Q ss_pred             CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCC---CCEEEECCC---CHHHHHHHHHHHH-C
Q ss_conf             90799-97588678999999986299728999965300786006677479---989999389---8378999999861-2
Q gi|254780294|r    1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNA---ADVSILCLP---DVASLEIIQLIKK-N   72 (311)
Q Consensus         1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~---~Divf~a~p---~~~s~~~~~~~~~-~   72 (311)
                      |-||+ |-||++=.|+.+-+.|.++ -.++...+.+...-.+..++...+   ..+.++..+   .+.-.++.....+ .
T Consensus         1 mnKvalITG~s~GIG~aia~~la~~-Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (259)
T PRK12384          1 MNKVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF   79 (259)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf             9978999468868999999999987-999999979889999999999862488608999832799999999999999982


Q ss_pred             CCCEEEECCCCCHHH
Q ss_conf             584898227630355
Q gi|254780294|r   73 GINSRIIDTSTAHRI   87 (311)
Q Consensus        73 g~~~~vid~ss~~R~   87 (311)
                      |.--.+|.|++....
T Consensus        80 G~iDilVnnAG~~~~   94 (259)
T PRK12384         80 GRVDLLVYSAGIAKA   94 (259)
T ss_pred             CCCCEEEECCCCCCC
T ss_conf             997199989977788


No 364
>PRK07578 short chain dehydrogenase; Provisional
Probab=63.28  E-value=11  Score=17.38  Aligned_cols=23  Identities=30%  Similarity=0.524  Sum_probs=21.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             07999758867899999998629
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      .||-|.|||+=.|+++.+.|.++
T Consensus         1 MrVlVTGas~GIG~aia~~la~~   23 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSAR   23 (199)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCC
T ss_conf             97999998748999999999679


No 365
>PRK08263 short chain dehydrogenase; Provisional
Probab=63.16  E-value=11  Score=17.37  Aligned_cols=99  Identities=15%  Similarity=0.112  Sum_probs=48.2

Q ss_pred             CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH-HHHHHHHHHH-CCCCEE
Q ss_conf             90799-97588678999999986299728999965300786006677479989999389837-8999999861-258489
Q gi|254780294|r    1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA-SLEIIQLIKK-NGINSR   77 (311)
Q Consensus         1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~-s~~~~~~~~~-~g~~~~   77 (311)
                      |-||+ |-||+.=.|+++.+.|.++- ..+...+.+...-.++.+..-..+..+-+-+.+.. -.+.+....+ -|.--.
T Consensus         2 ~gKv~lITGassGIG~a~A~~la~~G-~~Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDi   80 (275)
T PRK08263          2 MGKVWFITGASRGFGREWTEAALERG-DRVVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKHFGRLDI   80 (275)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             89989994674399999999999879-98999979899999999975996799996489999999999999998499878


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf             8227630355543110021000477652
Q gi|254780294|r   78 IIDTSTAHRIAPGWVYGFPEMDKSQKEK  105 (311)
Q Consensus        78 vid~ss~~R~~~~vpl~vPEvN~~~~~~  105 (311)
                      +|.|++.....+     +-|+..+..+.
T Consensus        81 LVNNAG~~~~~~-----~~e~~~~~~~~  103 (275)
T PRK08263         81 VVNNAGYGLFGM-----IEEVTESEARA  103 (275)
T ss_pred             EEECCCCCCCCC-----HHHCCHHHHHH
T ss_conf             998886678887-----47699999999


No 366
>PRK06370 mercuric reductase; Validated
Probab=62.69  E-value=11  Score=17.31  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=11.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             07999758867899999998629
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      |-|-|||+ |-.|...-..+.++
T Consensus         5 YDviVIG~-GpAG~~AA~~aa~~   26 (459)
T PRK06370          5 YDAVVIGA-GQAGPPLAARAAGL   26 (459)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHC
T ss_conf             75899998-88999999999968


No 367
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796    This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=62.59  E-value=7.9  Score=18.15  Aligned_cols=81  Identities=12%  Similarity=0.160  Sum_probs=47.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCEEEE
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861-25848982
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKK-NGINSRII   79 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~-~g~~~~vi   79 (311)
                      |.+++|+|+ |++|.|+=+++++- -.+++.+.-++.               .|+--..+.|.-....+.+ -|  +.++
T Consensus       181 m~sL~vIGg-g~~g~E~aQ~faRL-G~~V~~~~RS~~---------------ll~~~epeis~~V~~~l~~eeG--i~~~  241 (494)
T TIGR02053       181 MESLVVIGG-GAIGVELAQAFARL-GSEVTILQRSER---------------LLPREEPEISAAVEEALAEEEG--IEVV  241 (494)
T ss_pred             EEEEEEECC-CHHHHHHHHHHHHC-CCEEEHHHHHHH---------------HCCCCCHHHHHHHHHHHCCCCC--EEEE
T ss_conf             046888865-28999999999857-761403679986---------------4464688899999998414787--7998


Q ss_pred             CCCCCHH---H-HHHHHHCCCCCCH
Q ss_conf             2763035---5-5431100210004
Q gi|254780294|r   80 DTSTAHR---I-APGWVYGFPEMDK  100 (311)
Q Consensus        80 d~ss~~R---~-~~~vpl~vPEvN~  100 (311)
                      ..+-..|   . |.+..++.-|.|.
T Consensus       242 ~~~r~~~~v~~rngg~~~~~~e~~~  266 (494)
T TIGR02053       242 TSARQVKAVSVRNGGGKIVTVEKNG  266 (494)
T ss_pred             ECCEEEEEEEECCCCEEEEEEECCC
T ss_conf             0440355444527981899985589


No 368
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=62.55  E-value=11  Score=17.30  Aligned_cols=32  Identities=22%  Similarity=0.252  Sum_probs=26.2

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             907--9997588678999999986299728999965
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |.|  |.|||| |.||..+--.|.++ .+.+..+-.
T Consensus         1 M~~~DV~IvGa-G~vGl~lAl~La~~-G~~V~iiE~   34 (384)
T PRK08849          1 MNKYDIAVVGG-GMVGAATAIGFAKQ-GRSVAVIEG   34 (384)
T ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             98189999992-49999999999957-995999968


No 369
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=62.33  E-value=11  Score=17.27  Aligned_cols=119  Identities=12%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C
Q ss_conf             079997588678999999986299728999---------------9653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~   42 (311)
                      .||.|||| |=.|.-.+.-|+.--.-+|..               +.+.+..|+.                        +
T Consensus        42 a~VlvvG~-GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l  120 (370)
T PRK05600         42 ARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERL  120 (370)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHC
T ss_conf             97899888-75789999999982897489873898260210555426976669757999999999878997157356646


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCH---HHHHHCCCCE-EEEC
Q ss_conf             6----677479989999389837899999986125848982276303555431100210004---7765204960-7725
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDK---SQKEKIRSAR-YITN  114 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~---~~~~~~~~~~-iIan  114 (311)
                      +    .+.++++|+|+=|+++-.++-.+..+...-. +..| .++.+|++-.+-...|....   -.+....... -=+.
T Consensus       121 ~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~~~-~PlV-~ga~~~~eGQvsvf~~~~~~~~pcyrclfP~~p~~~~~  198 (370)
T PRK05600        121 TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG-TPLV-WGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSI  198 (370)
T ss_pred             CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEE-EEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             999999876368789977888799999999999849-9769-84532628899998168888886300267889974333


Q ss_pred             CCCCCCCCH
Q ss_conf             842113311
Q gi|254780294|r  115 PGCYATGAI  123 (311)
Q Consensus       115 PnC~~t~~~  123 (311)
                      |+|.....+
T Consensus       199 p~C~~~GVL  207 (370)
T PRK05600        199 PDCATAGVL  207 (370)
T ss_pred             CCCCCCCCC
T ss_conf             576214606


No 370
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=61.26  E-value=12  Score=17.15  Aligned_cols=36  Identities=17%  Similarity=0.203  Sum_probs=25.3

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             07999758867899999998629972899996530078
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN   39 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag   39 (311)
                      .||||||+ |=.|..--..|... -.+++.+-.....|
T Consensus       538 kKVAVIGs-GPAGLaAA~~Lar~-Gh~VTVFEk~~~~G  573 (1012)
T TIGR03315       538 HKVAVIGA-GPAGLSAGYFLARA-GHPVTVFEKKEKPG  573 (1012)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf             88999897-78999999999977-99569981589788


No 371
>pfam02800 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold.
Probab=61.22  E-value=12  Score=17.15  Aligned_cols=107  Identities=13%  Similarity=0.072  Sum_probs=64.5

Q ss_pred             HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CEEEEE
Q ss_conf             24788888503455650267651233335610000001344--432234332222234444434201332167-113688
Q gi|254780294|r  124 AILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKN--MPDTISSNHFFYSLDLLHKHLPEITQYSLI-KTSPMF  200 (311)
Q Consensus       124 laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~~~~~  200 (311)
                      ..++.|++.++|.+...+|+.++.+.    ....+..+...  .......|..+    ........+.+..++ ..++.-
T Consensus         3 P~~kvl~~~fgI~~g~mTTvHa~t~~----Q~l~D~~~~~d~rr~Raa~~niIP----t~TgAakav~~vlP~L~gkl~g   74 (158)
T pfam02800         3 PLAKVLNDNFGIEKGLMTTVHAYTAD----QKLVDGPHHKDLRRGRAAAPNIIP----TSTGAAKAVGLVLPELKGKLTG   74 (158)
T ss_pred             CCHHHHHHHCCEEEEEEEEEECCCCC----CCCCCCCCCCCCCCCHHHHCCCCC----CCCHHHHHHHHHHHHHCCCEEE
T ss_conf             00887876469548899876025387----413345587740002012212664----4517889997643420576226


Q ss_pred             EEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC
Q ss_conf             75203433202789999863257754489988665422001
Q gi|254780294|r  201 LPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG  241 (311)
Q Consensus       201 ~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~  241 (311)
                      ...++|...+...-..+.   ..+....+++.+.+.+..+.
T Consensus        75 ~a~RVPt~~vS~vDlt~~---l~k~~t~eeIn~~~~~as~~  112 (158)
T pfam02800        75 MAFRVPTPNVSVVDLTVE---LEKPVTVEEVNAALKEAAEG  112 (158)
T ss_pred             EEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC
T ss_conf             898347887406899999---66788899999999999746


No 372
>KOG3985 consensus
Probab=61.20  E-value=12  Score=17.15  Aligned_cols=87  Identities=16%  Similarity=0.124  Sum_probs=48.0

Q ss_pred             CCEEEEECCCCHHHHHHHH----HHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHH-HHHHH
Q ss_conf             9079997588678999999----9862997289999653007860066774799899993--------898378-99999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRS----RIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVAS-LEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~----lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s-~~~~~   67 (311)
                      |.|++|+|.||+---..++    ++..-||-.-       |.-  +..-..+++++||+|        .|..+- +.-.-
T Consensus         9 ~VklGIIGGsGl~dp~ile~~ve~~v~TP~G~p-------Sd~--v~~g~i~gv~cvllARHGr~H~imPt~Vn~rANiw   79 (283)
T KOG3985           9 TVKLGIIGGSGLYDPDILEDPVELVVPTPWGKP-------SDP--VIIGQISGVHCVLLARHGRKHDIMPTKVNFRANIW   79 (283)
T ss_pred             EEEEEEECCCCCCCCHHHHCCHHHCCCCCCCCC-------CCC--EEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHH
T ss_conf             079987536777783132051432589999996-------885--25531077589987223667763887676067689


Q ss_pred             HHHHCCCCEEEECCCCCHHHHHHHH---HCCCC
Q ss_conf             9861258489822763035554311---00210
Q gi|254780294|r   68 LIKKNGINSRIIDTSTAHRIAPGWV---YGFPE   97 (311)
Q Consensus        68 ~~~~~g~~~~vid~ss~~R~~~~vp---l~vPE   97 (311)
                      ++.+.|+. .+|.-+..=.+.++++   +++|.
T Consensus        80 ALk~~gc~-~ii~~tAcGSLre~I~Pgd~v~p~  111 (283)
T KOG3985          80 ALKSLGCT-AIISFTACGSLREEIKPGDFVLPD  111 (283)
T ss_pred             HHHHCCCC-EEEEEECCCCCCCCCCCCCEECCH
T ss_conf             99857974-899850124443458986675634


No 373
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=61.16  E-value=12  Score=17.14  Aligned_cols=31  Identities=16%  Similarity=0.399  Sum_probs=24.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             7999758867899999998629972899996
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      +|-+=||||+-|+-+++-|..+....+..+-
T Consensus         2 ~vlLTGATGFLG~yLl~eLL~~~~~kv~cLV   32 (382)
T COG3320           2 NVLLTGATGFLGAYLLLELLDRSDAKVICLV   32 (382)
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf             1899457027699999999716887289998


No 374
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=61.13  E-value=12  Score=17.14  Aligned_cols=78  Identities=15%  Similarity=0.258  Sum_probs=43.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE--------------CCCCCCCC------------------------CC
Q ss_conf             07999758867899999998629972899996--------------53007860------------------------06
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP--------------CEERHNLR------------------------YR   43 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~--------------s~~~ag~~------------------------~~   43 (311)
                      .||.|+|+ |-.|......|..-=.-+|+.+.              ..+..|+.                        ++
T Consensus        28 s~VlivG~-GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~  106 (209)
T PRK08644         28 AKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKID  106 (209)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf             96899888-78899999999993898189988999015411037567877597569999999874489828999722489


Q ss_pred             ----HHHHCCCCEEEECCCCHHHHHHHH-HHHH-CCCCEEEECCC
Q ss_conf             ----677479989999389837899999-9861-25848982276
Q gi|254780294|r   44 ----EDLLNAADVSILCLPDVASLEIIQ-LIKK-NGINSRIIDTS   82 (311)
Q Consensus        44 ----~~~~~~~Divf~a~p~~~s~~~~~-~~~~-~g~~~~vid~s   82 (311)
                          ++.++++|+++=|+++-.++.+.. .+.. .+  ..++..|
T Consensus       107 ~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~--~plV~as  149 (209)
T PRK08644        107 EDNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKG--KKVVSAS  149 (209)
T ss_pred             HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEE
T ss_conf             899999985799999999999999999999999779--9689996


No 375
>pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase.
Probab=61.03  E-value=12  Score=17.13  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=59.2

Q ss_pred             EEEEECCCC-HHHHHHHHHHHCCC---CEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEEC
Q ss_conf             799975886-78999999986299---7289999653007---------------8600-------66774799899993
Q gi|254780294|r    3 KIFIDGEHG-TTGLKIRSRIVQRK---DLCLLSIPCEERH---------------NLRY-------REDLLNAADVSILC   56 (311)
Q Consensus         3 kVaIvGATG-~vG~~li~lL~~hp---~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~a   56 (311)
                      ||+|+||-+ +....++..+..+|   ..++.+..=++..               |..+       .++.++++|+||.+
T Consensus         1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~   80 (183)
T pfam02056         1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDADFVINA   80 (183)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEE
T ss_conf             98999985444399999999608568989999977999999999999999999619983999978999996689999998


Q ss_pred             C--CCHHHHHHHH-HHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC
Q ss_conf             8--9837899999-986125848982276---30355543110021000477652049607725842
Q gi|254780294|r   57 L--PDVASLEIIQ-LIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC  117 (311)
Q Consensus        57 ~--p~~~s~~~~~-~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC  117 (311)
                      .  +...+++.-. .-.+.|..-.+-|.-   +-+|.-..+|..+ |+-.+-.+.-++++++---|.
T Consensus        81 irvG~~~~r~~De~Iplk~Gv~~~~~eT~G~GG~~~alRtip~~l-~ia~~i~e~~P~AwliNytNP  146 (183)
T pfam02056        81 IRVGLLPARELDEKIPLRHGVVGTIQETVGPGGIFRGLRTIPVFF-DIAKDIEELCPDAWVLNYTNP  146 (183)
T ss_pred             EEECCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCHHHHH-HHHHHHHHHCCCCEEEECCCH
T ss_conf             640771488877767998396532332457228887760189999-999999997998389982788


No 376
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258   These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=60.43  E-value=12  Score=17.06  Aligned_cols=97  Identities=15%  Similarity=0.179  Sum_probs=67.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             79997588678999999986299728999965300786006677479989999389837899999986125848982276
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                      ++.|||. |++|-||=.++.+- -.+++-+               +-.|=++...+.++|+.....|...|. ..++-++
T Consensus       180 slvIiGG-GVIG~EfA~~f~~l-G~~VTv~---------------E~~drILp~~D~evSk~~~~~L~~~GN-v~i~~~~  241 (481)
T TIGR01350       180 SLVIIGG-GVIGVEFASIFASL-GVKVTVI---------------EMLDRILPGEDAEVSKVVKKKLKKKGN-VKILTNA  241 (481)
T ss_pred             EEEEECC-CHHHHHHHHHHHHC-CCEEEEE---------------ECCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCC
T ss_conf             6699878-66778899999853-9808999---------------457500354316899999999974498-4985485


Q ss_pred             CCH--HHHHHHHHCC--CCCCHH-HHHHCCCCEEEECCCC
Q ss_conf             303--5554311002--100047-7652049607725842
Q gi|254780294|r   83 TAH--RIAPGWVYGF--PEMDKS-QKEKIRSARYITNPGC  117 (311)
Q Consensus        83 s~~--R~~~~vpl~v--PEvN~~-~~~~~~~~~iIanPnC  117 (311)
                      +--  ++..+--.+.  .+.+.. ..+.+..-++.-.-|=
T Consensus       242 ~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR  281 (481)
T TIGR01350       242 KVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGR  281 (481)
T ss_pred             EEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECC
T ss_conf             4423357752878999999879980588987399998424


No 377
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=60.27  E-value=12  Score=17.05  Aligned_cols=28  Identities=29%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             999758867899999998629972899996
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      |.|||| |.+|..+--.|.++ .+.+..+-
T Consensus         7 V~IvGa-Gp~Gl~lA~~La~~-G~~v~viE   34 (405)
T PRK08850          7 VAIIGG-GMVGLALAAALKDS-DLRIAVIE   34 (405)
T ss_pred             EEEECC-CHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             899991-58999999999858-99789993


No 378
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=59.94  E-value=12  Score=17.01  Aligned_cols=111  Identities=14%  Similarity=0.061  Sum_probs=62.2

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-
Q ss_conf             999999986299728999965300786006677479989999389837899999986125848-----98227630355-
Q gi|254780294|r   14 GLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-   87 (311)
Q Consensus        14 G~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-   87 (311)
                      =++++++|.++|..-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+.-.+.     .|.|...+.+. 
T Consensus         5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~p~~~vGaGTVl~~e~~~~a~   84 (212)
T PRK06015          5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA   84 (212)
T ss_pred             HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH
T ss_conf             99999999879979999779999999999999987998899968995199999999986999679542115699999999


Q ss_pred             HHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             5431-100210004776520496077258421133112
Q gi|254780294|r   88 APGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        88 ~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      +.+. -++-|-++++..+..+..++.--|||.|.+=++
T Consensus        85 ~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~  122 (212)
T PRK06015         85 KAGSRFIVSPGTTQELLAAANDSDVPLLPGAITPSEVM  122 (212)
T ss_pred             HCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf             84998998589999999999983997737869999999


No 379
>PRK06101 short chain dehydrogenase; Provisional
Probab=59.48  E-value=12  Score=16.96  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=29.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             9079997588678999999986299728999965300
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      |+.|-|.|||+=.|+++.+.|.++ -.++...+-++.
T Consensus         1 MktvlITGassGIG~a~A~~la~~-G~~Vi~~~R~~~   36 (241)
T PRK06101          1 MTSVLITGATSGIGKQLALDYAKA-GWKVIACGRNEA   36 (241)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHH
T ss_conf             998999224049999999999987-998999989999


No 380
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=59.48  E-value=12  Score=16.96  Aligned_cols=103  Identities=15%  Similarity=0.118  Sum_probs=56.6

Q ss_pred             HHHHHHCC--CCEEEEEEECCCC-CCCCCCHHHHCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHH
Q ss_conf             99998629--9728999965300-7860066774799899993-----89837899999986125848982276303555
Q gi|254780294|r   17 IRSRIVQR--KDLCLLSIPCEER-HNLRYREDLLNAADVSILC-----LPDVASLEIIQLIKKNGINSRIIDTSTAHRIA   88 (311)
Q Consensus        17 li~lL~~h--p~~~l~~l~s~~~-ag~~~~~~~~~~~Divf~a-----~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~   88 (311)
                      |-+.|.++  +..+.+.+--+.. .-..+ ....+.+|++|+.     ++++.+++-+.++....   -++| ..++++-
T Consensus        26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l-~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~---lv~~-~~al~~i  100 (255)
T COG1058          26 LADELTELGVDLARITTVGDNPDRIVEAL-REASERADVVITTGGLGPTHDDLTAEAVAKALGRP---LVLD-EEALAMI  100 (255)
T ss_pred             HHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCC---CCCC-HHHHHHH
T ss_conf             99999964961899996399999999999-99971899899879858996276899999982998---5669-9999999


Q ss_pred             HH-HH---HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             43-11---00210004776520496077258421133112
Q gi|254780294|r   89 PG-WV---YGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        89 ~~-vp---l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      .+ .-   ...+|-|.-+-...+++.++.||-|++-...+
T Consensus       101 ~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v  140 (255)
T COG1058         101 EEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVV  140 (255)
T ss_pred             HHHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCCEEEE
T ss_conf             9999852888885566410478988757787776873698


No 381
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=59.40  E-value=12  Score=16.95  Aligned_cols=31  Identities=35%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             EEEEECCCCHHHHHHHHHHH-CCCCEEEEEEEC
Q ss_conf             79997588678999999986-299728999965
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIV-QRKDLCLLSIPC   34 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~-~hp~~~l~~l~s   34 (311)
                      -|+|||+ ||+|.-.--.|. .+|..++..|-.
T Consensus        26 DVvIIGg-G~tGLstA~~L~~~~pg~~VvvLEa   57 (460)
T TIGR03329        26 DVCIVGG-GFTGLWTAIMIKQQRPALDVLVLEA   57 (460)
T ss_pred             EEEEECC-CHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf             1999994-3999999999997489998899948


No 382
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762   The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages:    (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer.    Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC)  and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales .    This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=59.38  E-value=12  Score=16.95  Aligned_cols=134  Identities=25%  Similarity=0.180  Sum_probs=80.1

Q ss_pred             EEEEECCCCHHHH--HHHHHHHCC-CCEEEEEEECCCC-----------------CCCCCCHHHHCCCCEEEECCCCHHH
Q ss_conf             7999758867899--999998629-9728999965300-----------------7860066774799899993898378
Q gi|254780294|r    3 KIFIDGEHGTTGL--KIRSRIVQR-KDLCLLSIPCEER-----------------HNLRYREDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         3 kVaIvGATG~vG~--~li~lL~~h-p~~~l~~l~s~~~-----------------ag~~~~~~~~~~~Divf~a~p~~~s   62 (311)
                      ||.|+|= |-+|+  -+.+.|.++ ..+.+.-......                 .|.+-..+.+.++|+|+.+=|=...
T Consensus         1 ~i~i~Gl-G~tG~G~a~a~~L~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~vv~SPGi~~~   79 (476)
T TIGR01087         1 KILILGL-GKTGRGVAVARFLKKKGAEVTVTDDDPEEELERSKGQLKLSEGVVLYTGGKDDLEDLNNADLVVLSPGIPPD   79 (476)
T ss_pred             CEEEEEE-CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCC
T ss_conf             9789986-751078999999997298799998452213431133124556413532675310123342079978989867


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCHHHHHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCE
Q ss_conf             99999986125848982276303555431-10021000477652049607725842113311247888885034556502
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTSTAHRIAPGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPI  141 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~  141 (311)
                      .++...+.++|.. ++=|..-+||..+.. |.-+=              =|+.-|-=||...| +.-|++..+++.    
T Consensus        80 hp~~~~a~~~g~~-v~gdi~L~~~~~~~~~~~~~~--------------aITGTnGKtTTT~L-~~~~L~~~G~~a----  139 (476)
T TIGR01087        80 HPLVQAAAKRGIP-VVGDIELALRLVDFPEPAKVV--------------AITGTNGKTTTTSL-LYHLLKAAGLKA----  139 (476)
T ss_pred             CHHHHHHHHCCCE-EEEHHHHHHHHCCCCCCCCEE--------------EEECCCCHHHHHHH-HHHHHHHCCCCE----
T ss_conf             7799999966980-898679999741578987379--------------99726860799999-999998469977----


Q ss_pred             EEEEECCCCCCCCCCCHHCCC
Q ss_conf             676512333356100000013
Q gi|254780294|r  142 TINAVSGYTGGGKKLISRMEQ  162 (311)
Q Consensus       142 ~~~~~sg~sgaG~~~~~~~~~  162 (311)
                          ..| |--|.++++.+..
T Consensus       140 ----~~g-GNIG~p~L~~~~~  155 (476)
T TIGR01087       140 ----VLG-GNIGTPALEVLDQ  155 (476)
T ss_pred             ----EEE-CCCCCHHHHHHCC
T ss_conf             ----862-5788125553105


No 383
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=59.15  E-value=13  Score=16.93  Aligned_cols=118  Identities=12%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             EEEEEECCCCCCCCCCHHHH-CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHC
Q ss_conf             89999653007860066774-79989999389837899999986125848982276303555431100210004776520
Q gi|254780294|r   28 CLLSIPCEERHNLRYREDLL-NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKI  106 (311)
Q Consensus        28 ~l~~l~s~~~ag~~~~~~~~-~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~  106 (311)
                      ++..++++.+.+..-.-..+ ..-|=|+...-......|++.+...|..+.+++..-.       .-+-||--.+.++.-
T Consensus        57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg-------~~v~p~~v~~~L~~~  129 (383)
T COG0075          57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWG-------EAVDPEEVEEALDKD  129 (383)
T ss_pred             CEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC-------CCCCHHHHHHHHHCC
T ss_conf             4799768837999999986058998699982780777999999982996699847888-------879999999998528


Q ss_pred             CCCEEEECCCCCCC-CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC
Q ss_conf             49607725842113-311247888885034556502676512333356
Q gi|254780294|r  107 RSARYITNPGCYAT-GAIAILRPLRKAKLLPDRYPITINAVSGYTGGG  153 (311)
Q Consensus       107 ~~~~iIanPnC~~t-~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG  153 (311)
                      .....|+..-|=|. .++-+|.-+.+...-. ....+++++|+.+|--
T Consensus       130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~-g~l~iVDaVsS~Gg~~  176 (383)
T COG0075         130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEH-GALLIVDAVSSLGGEP  176 (383)
T ss_pred             CCCCEEEEEECCCCCCCCCCHHHHHHHHHHC-CCEEEEEECCCCCCCC
T ss_conf             9950899981157520137699999999972-9889998234578812


No 384
>PRK06199 ornithine cyclodeaminase; Validated
Probab=59.14  E-value=13  Score=16.93  Aligned_cols=15  Identities=13%  Similarity=0.255  Sum_probs=6.8

Q ss_pred             CCCEEEECCCCHHHH
Q ss_conf             998999938983789
Q gi|254780294|r   49 AADVSILCLPDVASL   63 (311)
Q Consensus        49 ~~Divf~a~p~~~s~   63 (311)
                      +.|-=|-|+|.=+..
T Consensus        73 ~~d~r~~amPaylgg   87 (379)
T PRK06199         73 GPDRRFMAMPAYLGG   87 (379)
T ss_pred             CCCCCEEEECCCCCC
T ss_conf             888748971441278


No 385
>PTZ00188 adrenodoxin reductase; Provisional
Probab=59.09  E-value=13  Score=16.92  Aligned_cols=58  Identities=16%  Similarity=0.235  Sum_probs=34.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------------------------------------CCCCC
Q ss_conf             079997588678999999986299728999965300---------------------------------------78600
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------------------------------------HNLRY   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------------------------------------ag~~~   42 (311)
                      +||||||+ |=-|-=--+.|.++|..++..+-.-.-                                       .|+.+
T Consensus        40 lRVAIVGS-GPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRyGVAPDHpevKnv~~~f~~~a~~p~~rF~GNV~vG~Di  118 (506)
T PTZ00188         40 FKVGIIGA-GPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYRTFDLVFSSPNYRFFGNVHVGVDL  118 (506)
T ss_pred             CEEEEECC-CCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECEEECCCC
T ss_conf             57999888-83899999999638997798882689887411104688985660689999999658975999473348988


Q ss_pred             C-HHHHCCCCEEEECCCCH
Q ss_conf             6-67747998999938983
Q gi|254780294|r   43 R-EDLLNAADVSILCLPDV   60 (311)
Q Consensus        43 ~-~~~~~~~Divf~a~p~~   60 (311)
                      + ++....+|.|+||.++.
T Consensus       119 tl~eL~~~YdAVVlA~GAs  137 (506)
T PTZ00188        119 KMEELRRHYNCVIFCCGAS  137 (506)
T ss_pred             CHHHHHHHCCEEEEECCCC
T ss_conf             9999986389999947978


No 386
>KOG0409 consensus
Probab=58.67  E-value=13  Score=16.88  Aligned_cols=63  Identities=14%  Similarity=0.215  Sum_probs=45.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------HHHHCCCCEEEECCCCHHHHHH
Q ss_conf             9079997588678999999986299728999965300786006----------6774799899993898378999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------EDLLNAADVSILCLPDVASLEI   65 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------~~~~~~~Divf~a~p~~~s~~~   65 (311)
                      +.||+-+|- |.-|..|.+-|-.+ -+.++...-...+-+.+.          .+..+++|++|.++|+....+-
T Consensus        35 ~~~iGFIGL-G~MG~~M~~nLik~-G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~  107 (327)
T KOG0409          35 KTRIGFIGL-GNMGSAMVSNLIKA-GYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKD  107 (327)
T ss_pred             CCEEEEEEE-CCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCHHHHCCHHHHHHHCCEEEEECCCHHHHHH
T ss_conf             551357743-41118999999975-98799995867887899970501407979998636889997688076688


No 387
>TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106   Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi)..
Probab=58.41  E-value=4.7  Score=19.56  Aligned_cols=28  Identities=18%  Similarity=0.207  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
Q ss_conf             37899999986125848982276303555431100
Q gi|254780294|r   60 VASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG   94 (311)
Q Consensus        60 ~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~   94 (311)
                      .+|.+|-..|.+.|       ++..|=+|-.-|++
T Consensus        88 AiS~~WF~~F~~~g-------LA~SHIL~~PHP~v  115 (365)
T TIGR02735        88 AISNHWFKLFKEAG-------LAESHILDIPHPFV  115 (365)
T ss_pred             HHHHHHHHHHHHCC-------CCHHHHCCCCCCEE
T ss_conf             88899999987457-------40010015898718


No 388
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710   ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process.
Probab=58.39  E-value=13  Score=16.85  Aligned_cols=94  Identities=20%  Similarity=0.234  Sum_probs=58.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECC---CC------CCCCCC-------------------HHHH--CCCC
Q ss_conf             79997588678999999986299-7289999653---00------786006-------------------6774--7998
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCE---ER------HNLRYR-------------------EDLL--NAAD   51 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~---~~------ag~~~~-------------------~~~~--~~~D   51 (311)
                      ||+|+|+ |.+|.-+--.|.+-. .-++++++-.   +.      .|..+.                   ...+  .++|
T Consensus         1 ~i~i~G~-GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D   79 (332)
T TIGR00745         1 KIAIIGA-GAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKAD   79 (332)
T ss_pred             CEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCC
T ss_conf             9689951-788999999987318995189998872168899998588389762567750330441220475335787754


Q ss_pred             EEEECCCCHHHHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHCCCC
Q ss_conf             99993898378999999-86125848982276303555431100210
Q gi|254780294|r   52 VSILCLPDVASLEIIQL-IKKNGINSRIIDTSTAHRIAPGWVYGFPE   97 (311)
Q Consensus        52 ivf~a~p~~~s~~~~~~-~~~~g~~~~vid~ss~~R~~~~vpl~vPE   97 (311)
                      ++|.|+=.-.+.+.+.. ....+.+++|+-.-.=........-.+|+
T Consensus        80 ~~~~~~K~~~~~~~~~~~~~~~~~~~~vl~lqNG~g~~e~l~~~~~~  126 (332)
T TIGR00745        80 LVIITVKAYQTEEALALLLPLIGPNTVVLLLQNGLGHEEKLAELLPE  126 (332)
T ss_pred             EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCC
T ss_conf             89997035004899999986418882799973880279999985069


No 389
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=57.55  E-value=13  Score=16.76  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=15.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCC
Q ss_conf             999758867899999998629
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~h   24 (311)
                      |.|+|+ |-.|...-..+.+.
T Consensus         7 viVIG~-GpaG~~aA~~aa~~   26 (467)
T PRK07818          7 VVVLGA-GPGGYVAAIRAAQL   26 (467)
T ss_pred             EEEECC-CHHHHHHHHHHHHC
T ss_conf             899997-88999999999978


No 390
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=57.43  E-value=13  Score=16.75  Aligned_cols=29  Identities=17%  Similarity=0.231  Sum_probs=24.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9997588678999999986299728999965
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |.|||| |.||..+--.|.++ .+++..+-.
T Consensus         9 V~IvGa-Gp~Gl~lA~~L~~~-G~~v~liE~   37 (392)
T PRK08773          9 AVIVGG-GVVGAACALALADA-GLSVALVEG   37 (392)
T ss_pred             EEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             899990-69999999999866-997899917


No 391
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=57.32  E-value=13  Score=16.74  Aligned_cols=75  Identities=13%  Similarity=0.282  Sum_probs=38.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE-E-CCCCCCCCCCH-------H-----HHCCCCEEEECCCC---HHHHH
Q ss_conf             0799975886789999999862997289999-6-53007860066-------7-----74799899993898---37899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-P-CEERHNLRYRE-------D-----LLNAADVSILCLPD---VASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~-s~~~ag~~~~~-------~-----~~~~~Divf~a~p~---~~s~~   64 (311)
                      .++.|+|| |..|..|++-+..+|......+ + .....|.++..       +     .-.+.|.++.|.|+   +.-++
T Consensus       117 ~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~~~~  195 (588)
T COG1086         117 IRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEERRR  195 (588)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCEEECEEEECHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             86699937-65899999999748996159998887365188770226423147999999718766999648788999999


Q ss_pred             HHHHHHHCCCCEE
Q ss_conf             9999861258489
Q gi|254780294|r   65 IIQLIKKNGINSR   77 (311)
Q Consensus        65 ~~~~~~~~g~~~~   77 (311)
                      +...+...|..++
T Consensus       196 i~~~l~~~~~~v~  208 (588)
T COG1086         196 ILLRLARTGIAVR  208 (588)
T ss_pred             HHHHHHHCCCCEE
T ss_conf             9999875597078


No 392
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=57.27  E-value=13  Score=16.84  Aligned_cols=25  Identities=20%  Similarity=0.040  Sum_probs=15.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf             9079997588678999999986299728
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC   28 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~   28 (311)
                      |.||||+||--   .|+-.|++.-...+
T Consensus         1 M~KIGIIGAMe---eEI~~L~~~m~~~~   25 (459)
T PRK06698          1 MNRIGIIGAMQ---IEIDLLLEKLIMQE   25 (459)
T ss_pred             CCEEEEECCCH---HHHHHHHHHHHCCC
T ss_conf             95379981679---99999999731251


No 393
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=57.21  E-value=14  Score=16.73  Aligned_cols=19  Identities=21%  Similarity=0.183  Sum_probs=8.2

Q ss_pred             HHHHHHHCCCCEEEECCCC
Q ss_conf             9999861258489822763
Q gi|254780294|r   65 IIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        65 ~~~~~~~~g~~~~vid~ss   83 (311)
                      .+..+...|..+.++|.+.
T Consensus        35 A~~~A~~lGa~V~v~D~~~   53 (150)
T pfam01262        35 AAATAKGLGAPVTILDVRP   53 (150)
T ss_pred             HHHHHHHCCCEEEEEECCH
T ss_conf             9999986799899972999


No 394
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=57.04  E-value=14  Score=16.71  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=39.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC------C--C--CCHH--------HH--CCCCEEEECCCCHHH
Q ss_conf             7999758867899999998629972899996530078------6--0--0667--------74--799899993898378
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN------L--R--YRED--------LL--NAADVSILCLPDVAS   62 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag------~--~--~~~~--------~~--~~~Divf~a~p~~~s   62 (311)
                      +|-|.||||-||.-.++|....-...+...+|++..-      -  .  +++.        ..  .++|++|-+.+.+..
T Consensus       145 ~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~d~~~~v~~~t~g~gvDvv~D~vG~~~~  224 (326)
T COG0604         145 TVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTF  224 (326)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEECCCHHHH
T ss_conf             79997785469999999999849958999817578899987399889705642489999998379987889979867999


Q ss_pred             HHHHHHHHHCCCCEEEECCCC
Q ss_conf             999999861258489822763
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss   83 (311)
                      .+....+...|. ...|-..+
T Consensus       225 ~~~l~~l~~~G~-lv~ig~~~  244 (326)
T COG0604         225 AASLAALAPGGR-LVSIGALS  244 (326)
T ss_pred             HHHHHHHCCCCE-EEEEECCC
T ss_conf             999997425958-99980688


No 395
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006    One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.  2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+.    This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=56.75  E-value=14  Score=16.68  Aligned_cols=36  Identities=11%  Similarity=0.223  Sum_probs=27.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             07999758867899999998629972899996530078
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN   39 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag   39 (311)
                      .||||||| |=.|..==.+|.+ --.++..+.--...|
T Consensus       144 ~rVAviGA-GPAGLaCAD~L~R-aGV~v~VfDRhP~iG  179 (480)
T TIGR01318       144 KRVAVIGA-GPAGLACADILAR-AGVQVVVFDRHPEIG  179 (480)
T ss_pred             CEEEEECC-CCCHHHHHHHHHH-CCCEEEEEECCCCCC
T ss_conf             27899778-8602579998751-785599974770307


No 396
>PRK06482 short chain dehydrogenase; Provisional
Probab=56.70  E-value=14  Score=16.67  Aligned_cols=83  Identities=14%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             CCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHH-HHHHHH-HHHCCCCEE
Q ss_conf             9079997-5886789999999862997289999653007860066774799899993898378-999999-861258489
Q gi|254780294|r    1 MYKIFID-GEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVAS-LEIIQL-IKKNGINSR   77 (311)
Q Consensus         1 M~kVaIv-GATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s-~~~~~~-~~~~g~~~~   77 (311)
                      |.|+.+| |||+=.|+++.+.|.++-+ .+...+.+..+-..+.......+-++-+-+-+..+ ++.+.. +.+-|.--.
T Consensus         1 M~Kv~lITGaSsGiG~ala~~l~~~G~-~Vi~t~R~~~~l~~l~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDv   79 (276)
T PRK06482          1 MTKTWFITGASSGFGRGLTERLLARGD-RVAATVRRPDALDDLKARYGERLWVLQLDVTDTAAVRAVVDRAFAELGRIDV   79 (276)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCE
T ss_conf             997899915865999999999998899-8999978989999999866995799995379999999999999998099878


Q ss_pred             EECCCCC
Q ss_conf             8227630
Q gi|254780294|r   78 IIDTSTA   84 (311)
Q Consensus        78 vid~ss~   84 (311)
                      +|.|++.
T Consensus        80 LVNNAG~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
T ss_conf             8746877


No 397
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.60  E-value=14  Score=16.66  Aligned_cols=27  Identities=26%  Similarity=0.337  Sum_probs=19.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEE
Q ss_conf             0799975886789999999862997289
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCL   29 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l   29 (311)
                      .||.|+|+ |-.|.+..+-|..--.-+|
T Consensus        20 s~VlVvG~-GGLG~~v~~~La~aGVg~i   46 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGIDSI   46 (198)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEE
T ss_conf             98999877-8899999999997499869


No 398
>pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI).
Probab=56.48  E-value=14  Score=16.65  Aligned_cols=32  Identities=13%  Similarity=0.339  Sum_probs=24.4

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             99975886789999999862997289999653
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |-|-|++|++|..|++.|.+.-.-++..+...
T Consensus         1 ILVTGGaGFIGS~Lv~~Ll~~g~~~v~v~d~~   32 (280)
T pfam02719         1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRD   32 (280)
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf             79974886799999999996899889999088


No 399
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=56.47  E-value=14  Score=16.65  Aligned_cols=70  Identities=19%  Similarity=0.130  Sum_probs=46.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C
Q ss_conf             079997588678999999986299728999---------------9653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~   42 (311)
                      .||.|+|+ |-+|.+..+-|..--.-+++.               +..++..|+.                        +
T Consensus        22 s~VlvvG~-GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~  100 (197)
T cd01492          22 ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI  100 (197)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf             95999887-88999999999983798699998991877773978603233478885999999999738997289870458


Q ss_pred             ---CHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             ---667747998999938983789999998612
Q gi|254780294|r   43 ---REDLLNAADVSILCLPDVASLEIIQLIKKN   72 (311)
Q Consensus        43 ---~~~~~~~~Divf~a~p~~~s~~~~~~~~~~   72 (311)
                         .++.++++|+++.|+++-.++.....+..+
T Consensus       101 ~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~  133 (197)
T cd01492         101 SEKPEEFFSQFDVVVATELSRAELVKINELCRK  133 (197)
T ss_pred             CHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf             576899982899999999999999999999998


No 400
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.12  E-value=14  Score=16.61  Aligned_cols=110  Identities=12%  Similarity=0.086  Sum_probs=61.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H
Q ss_conf             99999986299728999965300786006677479989999389837899999986125848-----98227630355-5
Q gi|254780294|r   15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A   88 (311)
Q Consensus        15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~   88 (311)
                      +++++.|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+...+.     .|.|.....+. +
T Consensus         4 ~~~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~a~~~I~~l~~~~p~~~iGaGTV~~~e~~~~a~~   83 (210)
T PRK07455          4 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTLLTLEDLEEAIA   83 (210)
T ss_pred             HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf             99999999799799997599999999999999879988999689988999999999878996898881878999999998


Q ss_pred             HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             431-100210004776520496077258421133112
Q gi|254780294|r   89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      .+. -++-|-+|++..+......+..-|||.|.+=++
T Consensus        84 aGA~FiVSP~~~~~vi~~a~~~~i~~iPGv~TpsEi~  120 (210)
T PRK07455         84 AGAQFCFTPHVDLELIQAAVAADIPIIPGALTPTEIV  120 (210)
T ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf             6999998688889999999982997658869999999


No 401
>PRK07233 hypothetical protein; Provisional
Probab=56.00  E-value=14  Score=16.60  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=31.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
Q ss_conf             7999758867899999998629972899996530078600
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY   42 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~   42 (311)
                      ||+|||| |..|..--..|+++ -.+++.+=.+...|-+.
T Consensus         1 rVvVIGa-G~aGLsaA~~L~~~-G~~V~VlEa~~~~GGr~   38 (430)
T PRK07233          1 KIAIIGG-GIMGLAAAYRLAKA-GHEVTVFEADDQLGGLA   38 (430)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCCE
T ss_conf             9899997-78999999999839-99889995899895997


No 402
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.86  E-value=14  Score=16.59  Aligned_cols=87  Identities=14%  Similarity=0.111  Sum_probs=52.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHHC
Q ss_conf             0799975886789999999862997289999653007---86--------------00----------------667747
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLLN   48 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~~   48 (311)
                      .||||||| |.-|.-+-.+....-.+++++..-+..+   |+              ++                +-..+.
T Consensus       310 ~kv~ViGa-G~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~~  388 (706)
T PRK11154        310 NKVGVLGG-GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGFK  388 (706)
T ss_pred             CEEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHHC
T ss_conf             67999864-73238999999998698799997999999999998899999998618999899999862241004412315


Q ss_pred             CCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH
Q ss_conf             9989999389837899--9999861-258489822763035554
Q gi|254780294|r   49 AADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP   89 (311)
Q Consensus        49 ~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~   89 (311)
                      ++|+|+=|.+....-+  ...++.+ ...++.+-+|+|....+.
T Consensus       389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~  432 (706)
T PRK11154        389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQ  432 (706)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH
T ss_conf             68879997145288899999999964798858950676776899


No 403
>PRK06116 glutathione reductase; Validated
Probab=55.68  E-value=14  Score=16.57  Aligned_cols=19  Identities=0%  Similarity=-0.136  Sum_probs=9.7

Q ss_pred             CCCEEEEEEEEECCCCEEE
Q ss_conf             9960799999808997699
Q gi|254780294|r  266 GNDKLHLFFFDSSELPYIN  284 (311)
Q Consensus       266 g~n~v~Vg~~~~~~~~~~~  284 (311)
                      +....++-...|.+++++.
T Consensus       385 ~~~~g~~Klv~d~~t~~IL  403 (450)
T PRK06116        385 HRQPCLMKLVVDGKEEKVV  403 (450)
T ss_pred             CCCCEEEEEEEECCCCEEE
T ss_conf             9886799999999979799


No 404
>PRK09414 glutamate dehydrogenase; Provisional
Probab=55.23  E-value=15  Score=16.52  Aligned_cols=12  Identities=33%  Similarity=0.174  Sum_probs=6.3

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             210136899999
Q gi|254780294|r  291 NLGKGASGAAIQ  302 (311)
Q Consensus       291 NL~KGAAgnAVQ  302 (311)
                      ||+.||--.+++
T Consensus       423 ~l~~gA~i~g~~  434 (446)
T PRK09414        423 NYVLGANIAGFV  434 (446)
T ss_pred             CHHHHHHHHHHH
T ss_conf             899985899999


No 405
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=55.02  E-value=15  Score=16.50  Aligned_cols=116  Identities=17%  Similarity=0.182  Sum_probs=50.5

Q ss_pred             CCCCCCCCHHHHC--CCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEE
Q ss_conf             0078600667747--99899993898378999999861258489822763035554311002100047765204960772
Q gi|254780294|r   36 ERHNLRYREDLLN--AADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYIT  113 (311)
Q Consensus        36 ~~ag~~~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIa  113 (311)
                      .+-|.++....|+  +.|.+..+...+--.++...+...++.  =.+-+-.|..+  +--.+-|+.+.+.. +-.-+-|-
T Consensus        20 ~~~~~~mHN~af~~lgl~~~Y~~~~~~~l~~~i~~lr~~~~~--G~nVTiP~K~~--i~~~lD~ld~~A~~-iGAVNTiv   94 (272)
T PRK12550         20 SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIR--GCAVSMPFKEA--CIPLVDELDPSAKA-IESVNTIV   94 (272)
T ss_pred             CCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCC--EEEECCCCHHH--HHHHHCCCCHHHHH-HCCEEEEE
T ss_conf             867789999999987999299863787799999988757998--89986436999--99985436888997-27554799


Q ss_pred             CCC-----CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCC
Q ss_conf             584-----211331124788888503455650267651233335610000001
Q gi|254780294|r  114 NPG-----CYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRME  161 (311)
Q Consensus       114 nPn-----C~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~  161 (311)
                      +-+     -+|=  ...+.-+++...+.....+.   .-|+||++++..-.+.
T Consensus        95 ~~~g~l~G~NTD--~~G~~~~l~~~~~~~~~~~l---ilGaGGaarai~~aL~  142 (272)
T PRK12550         95 NTDGHLKAYNTD--YIAIAQLLEEYQVPPDAVVA---LRGSGGMAKAVAAALR  142 (272)
T ss_pred             EECCEEEEEECC--HHHHHHHHHHCCCCCCCEEE---EECCCHHHHHHHHHHH
T ss_conf             559989999377--89999999970888677389---9736233899999999


No 406
>PRK13018 cell division protein FtsZ; Provisional
Probab=54.92  E-value=15  Score=16.49  Aligned_cols=87  Identities=14%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC------C------CCCCC-----------------------HHH
Q ss_conf             7999758867899999998629-9728999965300------7------86006-----------------------677
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER------H------NLRYR-----------------------EDL   46 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~------a------g~~~~-----------------------~~~   46 (311)
                      ||-|+|.=|.-+-.+-++...- ..+|+..+-....      +      |+++.                       .+.
T Consensus        29 kIkViGvGG~G~Navn~M~~~gi~gVefia~NTD~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~~I~~~  108 (387)
T PRK13018         29 KIKVVGVGGAGNNTVNRLYDIGIEGAETIAINTDAQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRDEIKEV  108 (387)
T ss_pred             CEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             68999768863999999998399983499981659998369998279857765788999888389999999829999999


Q ss_pred             HCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf             4799899993------8983789999998612584898227630355543
Q gi|254780294|r   47 LNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG   90 (311)
Q Consensus        47 ~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~   90 (311)
                      +++.|+||.+      ++.+.+.-.+..+.+.|+ ..|-=-+..|+++-.
T Consensus       109 l~g~DmVFItAGmGGGTGTGAAPVIA~iAke~Ga-LtVavVT~PF~fEG~  157 (387)
T PRK13018        109 LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGA-LVIGVVTKPFKFEGR  157 (387)
T ss_pred             HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEECCCHHHHHH
T ss_conf             7589869999534785137778999999998199-399994489577768


No 407
>PRK07236 hypothetical protein; Provisional
Probab=54.69  E-value=15  Score=16.47  Aligned_cols=30  Identities=10%  Similarity=0.032  Sum_probs=24.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             07999758867899999998629972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      .||.|||| |.+|..+=-.|.++ -++++.+-
T Consensus         7 ~kV~IVGa-GiaGL~~A~~L~~~-G~~v~v~E   36 (386)
T PRK07236          7 PRAVVVGG-SLGGLFAANLLRRA-GWDVDVFE   36 (386)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             96899993-68999999999858-99989986


No 408
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=54.63  E-value=15  Score=16.46  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=58.7

Q ss_pred             HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHC---------CCCEEEECCCCC
Q ss_conf             99999998629972899996530078600667747998999938983789999998612---------584898227630
Q gi|254780294|r   14 GLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKN---------GINSRIIDTSTA   84 (311)
Q Consensus        14 G~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~---------g~~~~vid~ss~   84 (311)
                      ..++++.|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.++         |.. .|+|...+
T Consensus         3 k~~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~~~~p~~~iGaG-TV~~~e~~   81 (209)
T PRK06552          3 KSEILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERYKDDPEVLIGAG-TVLDAVTA   81 (209)
T ss_pred             HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHHH
T ss_conf             89999999979979999728999999999999987998899967897599999999998177998189887-27489999


Q ss_pred             HHH-HHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             355-5431-100210004776520496077258421133112
Q gi|254780294|r   85 HRI-APGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        85 ~R~-~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      .+. +.+. -++-|.+|++.++..+...+..-|||+|.+=++
T Consensus        82 ~~a~~aGA~FiVSP~~~~~v~~~a~~~~i~~iPG~~TpsEi~  123 (209)
T PRK06552         82 RQAILAGAQFIVSPSFNRETAKICNRYQIPYLPGCMTVTEIV  123 (209)
T ss_pred             HHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf             999985998897699989999999985996417979999999


No 409
>PTZ00318 NADH dehydrogenase; Provisional
Probab=54.15  E-value=15  Score=16.42  Aligned_cols=33  Identities=12%  Similarity=0.204  Sum_probs=26.2

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC
Q ss_conf             79997588678999999986299728999965300
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER   37 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~   37 (311)
                      ||-|||+ |+.|-.+.+-|... ..++++++-+.+
T Consensus        12 rVVIlGg-GfaGl~~ak~L~~~-~~~VtLVdp~ny   44 (514)
T PTZ00318         12 NVVVVGT-GWAGCYFARHLNPK-LANLHVLSTRNH   44 (514)
T ss_pred             EEEEECC-CHHHHHHHHHHCCC-CCCEEEECCCCC
T ss_conf             5899997-69999999973868-982899999998


No 410
>PRK08013 hypothetical protein; Provisional
Probab=54.01  E-value=15  Score=16.40  Aligned_cols=32  Identities=22%  Similarity=0.322  Sum_probs=25.3

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             907--9997588678999999986299728999965
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |.+  |.|||| |.||..+--.|.++ -+.+..+-.
T Consensus         1 M~~~DV~IvGa-GpvGl~lA~~La~~-G~~v~viE~   34 (400)
T PRK08013          1 MQSVDVAIVGG-GMVGLAVACGLQGS-GLRVAVLEH   34 (400)
T ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             99678899993-59999999999718-995899918


No 411
>PRK07588 hypothetical protein; Provisional
Probab=53.35  E-value=16  Score=16.34  Aligned_cols=29  Identities=24%  Similarity=0.282  Sum_probs=24.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0799975886789999999862997289999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI   32 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l   32 (311)
                      .||+|||| |..|..+=-.|.++ -++++.+
T Consensus         1 mkVlIvGa-GiaGLalA~~L~r~-G~~v~V~   29 (391)
T PRK07588          1 MKIAISGA-GIAGATLAHWLQRT-GHEPTLI   29 (391)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEE
T ss_conf             97999993-28999999999868-9998999


No 412
>PRK09126 hypothetical protein; Provisional
Probab=53.25  E-value=16  Score=16.33  Aligned_cols=32  Identities=25%  Similarity=0.399  Sum_probs=26.0

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             907--9997588678999999986299728999965
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |.+  |.|||| |.||..+--.|.++ -+++..+-.
T Consensus         1 Mm~~DV~IvGa-Gp~Gl~lA~~La~~-G~~v~viE~   34 (392)
T PRK09126          1 MMHSDILVVGA-GPAGLSFARSLAGS-GLKVTLIER   34 (392)
T ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             99899999992-58999999999868-998999908


No 413
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=53.23  E-value=16  Score=16.32  Aligned_cols=11  Identities=0%  Similarity=0.008  Sum_probs=6.4

Q ss_pred             EEEECCCCCCC
Q ss_conf             07725842113
Q gi|254780294|r  110 RYITNPGCYAT  120 (311)
Q Consensus       110 ~iIanPnC~~t  120 (311)
                      +++..+++..=
T Consensus       134 Kia~~A~~~~D  144 (477)
T PRK09310        134 KIAVSSTSSTD  144 (477)
T ss_pred             EEEEECCCHHH
T ss_conf             99840387778


No 414
>PRK08163 salicylate hydroxylase; Provisional
Probab=53.17  E-value=16  Score=16.32  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=25.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             0799975886789999999862997289999653
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      .+|+|||| |.+|..+--.|.++ .++++.+-..
T Consensus         5 ~~V~IVGa-GiaGL~lA~~L~r~-Gi~v~V~Er~   36 (396)
T PRK08163          5 TPVLIVGG-GIGGLAAALALARQ-GIKVKLLEQA   36 (396)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEECCC
T ss_conf             84999897-88999999999978-9999999179


No 415
>KOG0069 consensus
Probab=53.14  E-value=16  Score=16.32  Aligned_cols=13  Identities=8%  Similarity=0.107  Sum_probs=5.9

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             0136899999999
Q gi|254780294|r  293 GKGASGAAIQNMD  305 (311)
Q Consensus       293 ~KGAAgnAVQn~n  305 (311)
                      ++.-|..++-|.+
T Consensus       310 ~~~m~~~v~~n~~  322 (336)
T KOG0069         310 REKMAEIVLNNLL  322 (336)
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 416
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=53.05  E-value=16  Score=16.31  Aligned_cols=59  Identities=20%  Similarity=0.257  Sum_probs=38.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE---CCCC---CCCCC--CHHHHCCCCEEEECCCCHHH
Q ss_conf             07999758867899999998629972899996---5300---78600--66774799899993898378
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP---CEER---HNLRY--REDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~---s~~~---ag~~~--~~~~~~~~Divf~a~p~~~s   62 (311)
                      +++||+|- |-+|+++.+++... ..++....   +.+.   .|-++  -++.+.++|++-+.+|-...
T Consensus       139 ktlGIiG~-G~IG~~vA~~~~~f-gm~Vi~yDP~~~~~~~~~~gv~~~~l~ell~~sD~IslH~Plt~e  205 (524)
T PRK13581        139 KTLGVIGL-GRIGSEVAKRAKAF-GMKVIAYDPYISPERAAQLGVELVELDELLARADFITLHTPLTPE  205 (524)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHCCEEEECCCCCHH
T ss_conf             88999776-75789999999854-974788777644667987196686089973108899993678615


No 417
>pfam06263 consensus
Probab=52.93  E-value=8.3  Score=18.05  Aligned_cols=88  Identities=16%  Similarity=0.211  Sum_probs=51.6

Q ss_pred             HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf             479989999389837899999986125848982-2763035554311002100047765204960772584211331124
Q gi|254780294|r   47 LNAADVSILCLPDVASLEIIQLIKKNGINSRII-DTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI  125 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la  125 (311)
                      ..+..+++.+.|...+..-+.++.++|..+.++ ||=+   .++++-|-        ....++.-++=.|.|=|.. + .
T Consensus       113 ~p~AnlalISvpG~yAa~eA~~AL~~gl~VmlFSDNVs---~edE~~LK--------~~A~ekGLlvMGPDCGTai-i-~  179 (514)
T pfam06263       113 LPEANLALISVPGEYAAAEAEKALNLGLHVMLFSDNVS---VEDEVALK--------QLAHEKGLLVMGPDCGTAI-I-N  179 (514)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHH--------HHHHHCCCEEECCCCCHHH-H-C
T ss_conf             89998799962708899999999987993799749997---79999999--------9998779488889862244-2-5


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             78888850345565026765123
Q gi|254780294|r  126 LRPLRKAKLLPDRYPITINAVSG  148 (311)
Q Consensus       126 L~PL~~~~~i~~~~~~~~~~~sg  148 (311)
                      =.||.=...+.+.. |-+.+.||
T Consensus       180 GvpLaFaNvV~~G~-IGiVgASG  201 (514)
T pfam06263       180 GVPLAFANVVRRGD-IGVVGASG  201 (514)
T ss_pred             CCCHHHHCCCCCCC-CEEEECCC
T ss_conf             85134204456787-11785166


No 418
>PRK06091 membrane protein FdrA; Validated
Probab=52.88  E-value=8.3  Score=18.04  Aligned_cols=88  Identities=18%  Similarity=0.289  Sum_probs=49.6

Q ss_pred             HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH
Q ss_conf             479989999389837899999986125848982-2763035554311002100047765204960772584211331124
Q gi|254780294|r   47 LNAADVSILCLPDVASLEIIQLIKKNGINSRII-DTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI  125 (311)
Q Consensus        47 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la  125 (311)
                      ..+..+++.+.|...+..-+.++.++|..+.++ ||=+   .++++-|-        ....++.-++=.|.|=|.. + .
T Consensus       115 ~p~AnlalISVpG~yAa~EA~~AL~~gl~VmlFSDNVs---~edE~~LK--------~~A~ekGLlvMGPDCGTaI-I-~  181 (555)
T PRK06091        115 LPDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVT---LEDEIQLK--------TRAREKGLLVMGPDCGTAM-I-A  181 (555)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHH--------HHHHHCCCEEECCCCCHHH-H-C
T ss_conf             89998799961707779999999987994799759997---78999999--------9998779388889863134-1-6


Q ss_pred             HHHHHHHCCCCCCCCEEEEEECC
Q ss_conf             78888850345565026765123
Q gi|254780294|r  126 LRPLRKAKLLPDRYPITINAVSG  148 (311)
Q Consensus       126 L~PL~~~~~i~~~~~~~~~~~sg  148 (311)
                      =.||.=...+.+-. |-+.+.||
T Consensus       182 GvpLaFANvV~~G~-IGIVgASG  203 (555)
T PRK06091        182 GTPLAFANVMPEGN-IGVIGASG  203 (555)
T ss_pred             CCCHHHCCCCCCCC-CEEEECCC
T ss_conf             85124204456887-12795166


No 419
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=52.65  E-value=16  Score=16.27  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=27.6

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEE
Q ss_conf             907999758867899999998629-972899996
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIP   33 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~   33 (311)
                      |+.|.|||| |-+|..+-..|.++ |..++.++=
T Consensus         3 ~~DvvIIGg-GI~G~a~a~~Ls~~~p~~~V~llE   35 (429)
T COG0579           3 DYDVVIIGG-GIMGAATAYELSEYEPDLSVALLE   35 (429)
T ss_pred             CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEE
T ss_conf             322999897-389899999999738896599997


No 420
>KOG1399 consensus
Probab=52.40  E-value=16  Score=16.24  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=23.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             0799975886789999999862997289999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI   32 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l   32 (311)
                      .+|||||| |.-|....+-|.++ ..+++.+
T Consensus         7 ~~vaIIGA-G~sGL~~ar~l~~~-g~~v~vf   35 (448)
T KOG1399           7 KDVAVIGA-GPAGLAAARELLRE-GHEVVVF   35 (448)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHC-CCCCEEE
T ss_conf             85489785-66888999999877-9983699


No 421
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily.  Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases.  Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS).  Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions.  Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=52.29  E-value=16  Score=16.23  Aligned_cols=143  Identities=13%  Similarity=0.064  Sum_probs=77.2

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHH-HH-HHHHHHHCCCCEEEECC
Q ss_conf             99975886789999999862997289999653007860066774799899993898378-99-99998612584898227
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVAS-LE-IIQLIKKNGINSRIIDT   81 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s-~~-~~~~~~~~g~~~~vid~   81 (311)
                      |-|+|-.|..=..++..|...+..+     .....|-.......+++.+.++-++.... +. |-.-+.....-++|||.
T Consensus         2 ililGLd~aGKTTil~~l~~~~~~~-----~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDs   76 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIPKK-----VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS   76 (167)
T ss_pred             EEEEEECCCCHHHHHHHHCCCCCCC-----CCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             8999008998899999982899876-----50877731799998999999998998778889999873477657999855


Q ss_pred             CCCHHHHHHHHHCCCCCCHHHHHHCCCCE--EEEC----CCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC
Q ss_conf             63035554311002100047765204960--7725----84211331124788888503455650267651233335610
Q gi|254780294|r   82 STAHRIAPGWVYGFPEMDKSQKEKIRSAR--YITN----PGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKK  155 (311)
Q Consensus        82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~--iIan----PnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~  155 (311)
                      |..-|+..-.-..--=+...   .+++.+  +++|    |+|.+..-+.-..-|.+... .......++.-|+.+|-|..
T Consensus        77 sD~~rl~eak~~L~~lL~~~---~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~-~~~~~~~I~~csA~tG~G~~  152 (167)
T cd04161          77 SDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVN-ENKSLCHIEPCSAIEGLGKK  152 (167)
T ss_pred             CCHHHHHHHHHHHHHHHCCH---HHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCC-CCCCEEEEEECEEECCCCCC
T ss_conf             75889999999999996588---778995999988657615899999998819742408-99863799957644488878


No 422
>PTZ00052 thioredoxin reductase; Provisional
Probab=52.03  E-value=16  Score=16.20  Aligned_cols=19  Identities=16%  Similarity=0.288  Sum_probs=6.5

Q ss_pred             EEEECCCCHHHHHHHHHHHC
Q ss_conf             99975886789999999862
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQ   23 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~   23 (311)
                      +.|+|+ |-.|..--...++
T Consensus        44 vvVIG~-GpgG~~AA~~Aa~   62 (541)
T PTZ00052         44 YVVIGG-GPGGMASAKEAAA   62 (541)
T ss_pred             EEEECC-CHHHHHHHHHHHH
T ss_conf             899997-8899999999998


No 423
>KOG1429 consensus
Probab=51.77  E-value=15  Score=16.41  Aligned_cols=23  Identities=22%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             07999758867899999998629
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      +||.|.||-|++|--|.+-|...
T Consensus        28 lrI~itGgaGFIgSHLvdkLm~e   50 (350)
T KOG1429          28 LRILITGGAGFIGSHLVDKLMTE   50 (350)
T ss_pred             EEEEEECCCCHHHHHHHHHHHHC
T ss_conf             07999657405889999999746


No 424
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=50.69  E-value=14  Score=16.71  Aligned_cols=17  Identities=29%  Similarity=0.540  Sum_probs=10.3

Q ss_pred             EECCCCCCCCCCCHHCC
Q ss_conf             51233335610000001
Q gi|254780294|r  145 AVSGYTGGGKKLISRME  161 (311)
Q Consensus       145 ~~sg~sgaG~~~~~~~~  161 (311)
                      +..|-||.||+..-.+-
T Consensus       368 AIlG~SGsGKSTllqLl  384 (573)
T COG4987         368 AILGRSGSGKSTLLQLL  384 (573)
T ss_pred             EEECCCCCCHHHHHHHH
T ss_conf             88779998789999999


No 425
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=50.59  E-value=17  Score=16.06  Aligned_cols=94  Identities=13%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             90799975886789999999862997289999653007860066774799899993898378999999861258489822
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      |.+|-|+|.|+- ++.|.+-|..+|...  .++|-...|.+..+....    +.++ +-.-+......+.+.+. ..+||
T Consensus         2 ~~~ilvlGGT~D-ar~la~~L~~~~~~~--~~ss~t~~g~~l~~~~~~----~~~~-G~l~~e~l~~~l~e~~i-~llID   72 (257)
T COG2099           2 MMRILLLGGTSD-ARALAKKLAAAPVDI--ILSSLTGYGAKLAEQIGP----VRVG-GFLGAEGLAAFLREEGI-DLLID   72 (257)
T ss_pred             CCEEEEEECCHH-HHHHHHHHHCCCCCE--EEEECCCCCCCCHHCCCC----EEEC-CCCCHHHHHHHHHHCCC-CEEEE
T ss_conf             835999826389-999999862068617--999703444241110588----6652-76887899999997498-88997


Q ss_pred             CCCCHH--H---------HHHHHHCCCCCCHHHH
Q ss_conf             763035--5---------5431100210004776
Q gi|254780294|r   81 TSTAHR--I---------APGWVYGFPEMDKSQK  103 (311)
Q Consensus        81 ~ss~~R--~---------~~~vpl~vPEvN~~~~  103 (311)
                      .|-.|=  .         +-++||+.-|-.++..
T Consensus        73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~  106 (257)
T COG2099          73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAP  106 (257)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             8875799998999999998599679987775545


No 426
>PRK07411 hypothetical protein; Validated
Probab=50.38  E-value=17  Score=16.04  Aligned_cols=87  Identities=10%  Similarity=-0.054  Sum_probs=49.5

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC------------------------C
Q ss_conf             07999758867899999998629972899---------------99653007860------------------------0
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR------------------------Y   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~------------------------~   42 (311)
                      .+|.|+|| |=.|.-.+.-|+.--.-+|.               .+...+..|+.                        +
T Consensus        39 a~VlvvG~-GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l  117 (390)
T PRK07411         39 ASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL  117 (390)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHC
T ss_conf             97899888-72379999999983897599974899462347854366620079718999999999868986421034325


Q ss_pred             C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH
Q ss_conf             6----677479989999389837899999986125848982276303555431
Q gi|254780294|r   43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGW   91 (311)
Q Consensus        43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v   91 (311)
                      +    .+.++++|+|+=|+++-.++-....+...-. +..| .++.+|++-.+
T Consensus       118 ~~~na~~li~~~DvvvD~tDNf~tRylindac~~~~-~PlV-~ga~~~~~Gqv  168 (390)
T PRK07411        118 SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN-KPNV-YGSIFRFEGQA  168 (390)
T ss_pred             CHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC-CCEE-EEECCCCEEEE
T ss_conf             552488742288689967888899999899999969-9879-97647778999


No 427
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744    This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=50.22  E-value=16  Score=16.22  Aligned_cols=35  Identities=11%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCC
Q ss_conf             999758867899999998629---972899996530078
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHN   39 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag   39 (311)
                      +.|||= ||||-++|+-+..+   ..|+|+.|+++.+..
T Consensus         1 LvlvGn-GM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~~   38 (813)
T TIGR02374         1 LVLVGN-GMVGHRLIEEVLKKDDKDEFEITVFGEEPHPA   38 (813)
T ss_pred             CEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf             978704-74103477767512101773089982588954


No 428
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=49.59  E-value=16  Score=16.33  Aligned_cols=60  Identities=10%  Similarity=0.021  Sum_probs=32.1

Q ss_pred             CEEEEECCC--CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHH
Q ss_conf             079997588--67899999998629972899996530078600667747998999938983789
Q gi|254780294|r    2 YKIFIDGEH--GTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASL   63 (311)
Q Consensus         2 ~kVaIvGAT--G~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~   63 (311)
                      ++||+++..  +..-..+.+...+||.+++.......+  .-+....-.++|++|...+.....
T Consensus        83 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~i~~~~~~--~~~~~l~~~~~D~a~~~~~~~~~~  144 (278)
T PRK09986         83 IELGVVGTALWGRMRPAMRHFLKENPNVEVLFREKSPS--MQMALLERRELDAGIWRMALEPNP  144 (278)
T ss_pred             EEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH--HHHHHHHCCCCCEEEECCCCCCCC
T ss_conf             36874216888764289999998789839999978869--999999779975899637777887


No 429
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=49.31  E-value=18  Score=15.94  Aligned_cols=63  Identities=19%  Similarity=0.049  Sum_probs=37.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCC-----C---CCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             0799975886789999999862997289999653-0078-----6---006677479989999389837899999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ERHN-----L---RYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~ag-----~---~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .||+|+|. |-.|+-..+.|.++-.+.  .+..+ ....     .   ...+....++|+++.+=+=....++..
T Consensus         1 mKi~V~Gl-G~sG~s~a~~L~~~g~~~--i~dD~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGI~~~~p~~~   72 (401)
T PRK03815          1 MKISLFGY-GKTTKALARFFVKNGGVD--IYDDKFTEPKKDEEGNLLLPSNDFDPNKSDLEIPSPGIPPSHPLIQ   72 (401)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCCCEE--EEECCCCCCCHHHHHCCCCCHHHCCCHHCCEEEECCCCCCCCHHHH
T ss_conf             93999847-771899999999487979--9989998622246404006843358012868998998599879999


No 430
>PRK08219 short chain dehydrogenase; Provisional
Probab=48.97  E-value=18  Score=15.91  Aligned_cols=32  Identities=22%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             9079997588678999999986299728999965
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      |+-+-|-|||+=.|+++.+.|.+.-  .+...+.
T Consensus         3 mKvalITGas~GIG~aia~~la~~g--~vv~~~r   34 (226)
T PRK08219          3 MPTALITGASRGIGAAIARALARTH--TLLLAGR   34 (226)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEEC
T ss_conf             8999992846499999999999699--8999989


No 431
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=48.36  E-value=19  Score=15.85  Aligned_cols=30  Identities=23%  Similarity=0.366  Sum_probs=18.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             07999758867899999998629972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      |-|.|+|+ |-.|...-..+.++ -..+..+-
T Consensus         5 YDviVIG~-GpaG~~aA~~aa~~-G~kV~liE   34 (462)
T PRK06416          5 YDVIVIGA-GPGGYVAAIRAAQL-GLKVAIVE   34 (462)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHC-CCEEEEEE
T ss_conf             99899998-88999999999968-99399996


No 432
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=47.90  E-value=19  Score=15.80  Aligned_cols=38  Identities=13%  Similarity=-0.002  Sum_probs=27.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCC
Q ss_conf             7999758867899999998629--9728999965300786
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNL   40 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~   40 (311)
                      +|||+|+||..--.|+.|++..  |..--.++......+.
T Consensus        27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~   66 (231)
T COG3840          27 IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS   66 (231)
T ss_pred             EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC
T ss_conf             7999778886578899998742477874589857214768


No 433
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=47.78  E-value=19  Score=15.79  Aligned_cols=27  Identities=26%  Similarity=0.236  Sum_probs=15.3

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             99975886789999999862997289999
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSI   32 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l   32 (311)
                      |.|+|+ |-.|...-..+.+. -.++..+
T Consensus         7 viVIG~-GpaG~~AA~~aa~~-G~kv~li   33 (464)
T PRK05976          7 LLIIGG-GPGGYVAAIRAGQL-GLKTALV   33 (464)
T ss_pred             EEEECC-CHHHHHHHHHHHHC-CCEEEEE
T ss_conf             999997-88999999999978-9929999


No 434
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=47.71  E-value=19  Score=15.79  Aligned_cols=16  Identities=19%  Similarity=0.268  Sum_probs=9.3

Q ss_pred             ECCCCCCCCCCCHHCC
Q ss_conf             1233335610000001
Q gi|254780294|r  146 VSGYTGGGKKLISRME  161 (311)
Q Consensus       146 ~sg~sgaG~~~~~~~~  161 (311)
                      +-|.+|++++..-.+.
T Consensus       132 ilGaGGaa~ai~~al~  147 (284)
T PRK12549        132 QLGAGGAGAAVAHALL  147 (284)
T ss_pred             EECCCCHHHHHHHHHH
T ss_conf             9656616899999999


No 435
>PRK07538 hypothetical protein; Provisional
Probab=47.66  E-value=19  Score=15.78  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=24.4

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             07999758867899999998629972899996
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      +||.|||| |.+|..+=-.|.++ -++++.+-
T Consensus         1 m~V~IvGa-G~aGL~lA~~L~~~-Gi~v~V~E   30 (413)
T PRK07538          1 MKVLIAGG-GIGGLTLALTLHQR-GIEVEVFE   30 (413)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEC
T ss_conf             98999990-58999999999978-99989993


No 436
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=47.46  E-value=19  Score=15.76  Aligned_cols=34  Identities=18%  Similarity=0.293  Sum_probs=30.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             07999758867899999998629972899996530
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE   36 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~   36 (311)
                      +||+++|| |.-|+-++.+...-|-+++..++..+
T Consensus        18 iRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~   51 (438)
T COG4091          18 IRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRN   51 (438)
T ss_pred             EEEEEECC-CCCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf             59987545-41106799987506883699984246


No 437
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=47.12  E-value=20  Score=15.73  Aligned_cols=32  Identities=22%  Similarity=0.346  Sum_probs=23.7

Q ss_pred             CCE--EEEECCCCHHHHHHHHHHHC--CCCEEEEEEE
Q ss_conf             907--99975886789999999862--9972899996
Q gi|254780294|r    1 MYK--IFIDGEHGTTGLKIRSRIVQ--RKDLCLLSIP   33 (311)
Q Consensus         1 M~k--VaIvGATG~vG~~li~lL~~--hp~~~l~~l~   33 (311)
                      |.|  |.|||| |.+|..+--.|.+  |..+.+..+-
T Consensus         1 M~~~DV~IvGa-Gp~Gl~lAl~L~~~g~~~~~v~viE   36 (395)
T PRK05732          1 MSRMDVIIVGG-GMAGATLALALSRLSHGRLPVALIE   36 (395)
T ss_pred             CCCCCEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEE
T ss_conf             97189899993-8999999999996188997499993


No 438
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=47.03  E-value=20  Score=15.72  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCC---------------------------CCCH-------
Q ss_conf             907999758867899999998629--9728999965300786---------------------------0066-------
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNL---------------------------RYRE-------   44 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~---------------------------~~~~-------   44 (311)
                      |+||+|.|--|..-..|++-|.++  ...++..++..=+.-.                           .+++       
T Consensus         1 ~~~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl~   80 (199)
T TIGR00101         1 MVKIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNLE   80 (199)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             93666504777646899999999887406677873110012468888764126622267741589873001000212188


Q ss_pred             ------HHHCCCCEEEE-CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHH
Q ss_conf             ------77479989999-38983789999998612584898227630355
Q gi|254780294|r   45 ------DLLNAADVSIL-CLPDVASLEIIQLIKKNGINSRIIDTSTAHRI   87 (311)
Q Consensus        45 ------~~~~~~Divf~-a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~   87 (311)
                            .-|.++|++|. +-++..|..|.|.+.+.-  .+|||-+.--+.
T Consensus        81 a~~~~~~rf~~~~~~~~esGGdnl~atf~P~l~d~t--~~vidva~G~ki  128 (199)
T TIGR00101        81 AVEELEARFPDLELVFIESGGDNLSATFSPELADLT--IFVIDVAEGDKI  128 (199)
T ss_pred             HHHHHHHCCCCEEEEEEECCCCCCEEECCCCEEEEE--EEEEEECCCCCC
T ss_conf             999886215640489983288620000276402367--889972058745


No 439
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=46.89  E-value=17  Score=16.14  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             907999758867899999998629
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      |.||+|||-++..=-.|+..|...
T Consensus         1 MkkVaivGrpNvGKSTLlN~L~g~   24 (143)
T pfam10662         1 MKKIMLIGRSGCGKTTLTQALNGE   24 (143)
T ss_pred             CCEEEEECCCCCCHHHHHHHHCCC
T ss_conf             975999899999999999997599


No 440
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=46.54  E-value=20  Score=15.67  Aligned_cols=53  Identities=15%  Similarity=0.136  Sum_probs=31.7

Q ss_pred             CEEEEEEECCCCCCC--CCCHHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             728999965300786--0066774--799899993898378999999861258489822
Q gi|254780294|r   26 DLCLLSIPCEERHNL--RYREDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus        26 ~~~l~~l~s~~~ag~--~~~~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      .+|+..........+  +.-....  .+++.++-+..++++....+.+.+.+  +.++.
T Consensus        40 ~ielv~~D~~~~p~~a~~~a~~Li~~~~V~aviG~~~S~~~~A~~~~~~~~~--vp~i~   96 (347)
T cd06335          40 KLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPVALANLEFIQQNK--IPLIG   96 (347)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCC--EEEEC
T ss_conf             8799984799998999999999995499268745777223455321577579--43863


No 441
>TIGR01001 metA homoserine O-succinyltransferase; InterPro: IPR005697    This family of enzymes, homoserine O-succinyltransferase (2.3.1.46 from EC), catalyses the first step in the biosynthesis of methionine.  Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. ; GO: 0008415 acyltransferase activity, 0019281 methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm.
Probab=45.76  E-value=21  Score=15.60  Aligned_cols=27  Identities=4%  Similarity=0.073  Sum_probs=21.1

Q ss_pred             HHHHHHHHHCCC-CEEEEEEECCCCCCC
Q ss_conf             999999986299-728999965300786
Q gi|254780294|r   14 GLKIRSRIVQRK-DLCLLSIPCEERHNL   40 (311)
Q Consensus        14 G~~li~lL~~hp-~~~l~~l~s~~~ag~   40 (311)
                      =.+++|||++-| +++|.+|.-+++.+|
T Consensus        51 E~Q~LrLL~NsPLQV~i~LL~~~~~~~k   78 (305)
T TIGR01001        51 ENQLLRLLSNSPLQVNITLLRIDSRKSK   78 (305)
T ss_pred             HHHHHHHHCCCCCEEEEEEEEECCCCCC
T ss_conf             9999998618984045687543277988


No 442
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=45.54  E-value=21  Score=15.58  Aligned_cols=83  Identities=12%  Similarity=0.177  Sum_probs=61.2

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCE--E
Q ss_conf             0799975886789999999862997289999653007860066774799899993--89837899999986125848--9
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINS--R   77 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~--~   77 (311)
                      +||.||-=-=+|.+---+.+...|.|.+...|++-..++.+-.+.  +.|++++-  +|++-.-++.+.+.+..+.+  .
T Consensus         1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI   78 (224)
T COG4565           1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQHYPVDVI   78 (224)
T ss_pred             CCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEE
T ss_conf             928997086589999999997389953898606499999999840--899799960267985077999998468997889


Q ss_pred             EECCCCCHH
Q ss_conf             822763035
Q gi|254780294|r   78 IIDTSTAHR   86 (311)
Q Consensus        78 vid~ss~~R   86 (311)
                      +|+.+++-+
T Consensus        79 ~iTAA~d~~   87 (224)
T COG4565          79 VITAASDME   87 (224)
T ss_pred             EEECCCHHH
T ss_conf             995344378


No 443
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity.  Members of this group include ABC
Probab=45.53  E-value=21  Score=15.58  Aligned_cols=55  Identities=15%  Similarity=0.139  Sum_probs=30.4

Q ss_pred             CEEEEEEECCCCC--CCCCCHHH-HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             7289999653007--86006677-479989999389837899999986125848982276
Q gi|254780294|r   26 DLCLLSIPCEERH--NLRYREDL-LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        26 ~~~l~~l~s~~~a--g~~~~~~~-~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                      .+++.........  .....+.. -+++++++-......+....+.+.+.+  +.+|.-+
T Consensus        40 ~i~l~~~D~~~~~~~~~~~~~~l~~~~v~~iiG~~~s~~~~~~~~~~~~~~--ip~i~~~   97 (298)
T cd06268          40 KIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAG--VPLISPG   97 (298)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC--CEEEECC
T ss_conf             889999679999899999999863279739974775788899999998719--2188057


No 444
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786    Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH).
Probab=45.43  E-value=11  Score=17.29  Aligned_cols=21  Identities=10%  Similarity=0.050  Sum_probs=11.0

Q ss_pred             CCCHHHHHHHHHCCCCCCHHH
Q ss_conf             630355543110021000477
Q gi|254780294|r   82 STAHRIAPGWVYGFPEMDKSQ  102 (311)
Q Consensus        82 ss~~R~~~~vpl~vPEvN~~~  102 (311)
                      .++||+.+.==++|.+|.+..
T Consensus       377 ~GdfRiT~NQNlIiA~V~e~~  397 (550)
T TIGR02041       377 KGDFRITSNQNLIIANVPEGG  397 (550)
T ss_pred             CCCEEECCCCCEEEECCCCHH
T ss_conf             997534477637884278423


No 445
>PRK07261 topology modulation protein; Provisional
Probab=45.43  E-value=21  Score=15.57  Aligned_cols=31  Identities=26%  Similarity=0.177  Sum_probs=26.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC---CCEEEEEE
Q ss_conf             07999758867899999998629---97289999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSI   32 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l   32 (311)
                      .||.|+|.+|-.=..|-+.|++.   |.+++-.+
T Consensus         1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l   34 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQL   34 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCE
T ss_conf             9899988999868999999999879797970227


No 446
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=44.31  E-value=22  Score=15.46  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=26.4

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC
Q ss_conf             907999758867899999998629972899996530
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE   36 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~   36 (311)
                      +.+|+|||+ |.+|.-.--.|.++.. ++..+....
T Consensus         4 ~~~vvIIGg-Gi~Gls~A~~La~~G~-~V~vie~~~   37 (387)
T COG0665           4 KMDVVIIGG-GIVGLSAAYYLAERGA-DVTVLEAGE   37 (387)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCC
T ss_conf             643999898-6999999999997699-199991798


No 447
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=44.31  E-value=22  Score=15.46  Aligned_cols=80  Identities=13%  Similarity=0.104  Sum_probs=42.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCCC------------------------
Q ss_conf             0799975886789999999862997289999---------------6530078600------------------------
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLRY------------------------   42 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~~------------------------   42 (311)
                      .||-|+|.+| +|.|..+=|.=--.-.++.+               -+++..|+.-                        
T Consensus        21 s~VLiiG~~g-lG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~   99 (425)
T cd01493          21 AHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP   99 (425)
T ss_pred             CCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             9399999971-199999872132897699995991878885766156677858839999999999847868547870687


Q ss_pred             ------CHHHHCCCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             ------66774799899993-89837899999986125848982276
Q gi|254780294|r   43 ------REDLLNAADVSILC-LPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        43 ------~~~~~~~~Divf~a-~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                            ..+.+.+.|+|+++ +|.....++-...++.+....+.|..
T Consensus       100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~fI~~~~~  146 (425)
T cd01493         100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSY  146 (425)
T ss_pred             HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf             88642687675283389982889999999999999869978999824


No 448
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=44.09  E-value=22  Score=15.44  Aligned_cols=72  Identities=11%  Similarity=0.064  Sum_probs=43.1

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-----------CCCCCC-----HHHH-CCCCEEEECCCCHHHHH
Q ss_conf             079997588678999999986299728999965300-----------786006-----6774-79989999389837899
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-----------HNLRYR-----EDLL-NAADVSILCLPDVASLE   64 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-----------ag~~~~-----~~~~-~~~Divf~a~p~~~s~~   64 (311)
                      .||.|+|. |-.|.-..++|.++- .++....++..           .|-++.     ...+ .++|+++.+-+=.....
T Consensus        10 k~i~viGl-G~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV~SPgI~~~~p   87 (450)
T PRK02472         10 KKVLVLGL-AKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLEEGIKVICGSHPLELLDENFDLMVKNPGIPYDNP   87 (450)
T ss_pred             CEEEEEEE-CHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHHCCCCCCEEEECCCCCCCCH
T ss_conf             98999977-899999999999886-9899984886657989999996799899788807860578879998998799999


Q ss_pred             HHHHHHHCCCC
Q ss_conf             99998612584
Q gi|254780294|r   65 IIQLIKKNGIN   75 (311)
Q Consensus        65 ~~~~~~~~g~~   75 (311)
                      +...+.++|..
T Consensus        88 ~~~~a~~~~i~   98 (450)
T PRK02472         88 MVEEALEKGIP   98 (450)
T ss_pred             HHHHHHHCCCC
T ss_conf             99999986996


No 449
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).     This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=43.83  E-value=18  Score=15.90  Aligned_cols=24  Identities=13%  Similarity=0.184  Sum_probs=16.6

Q ss_pred             EEEECCCCHHHHHHHHHHHCC--CCE
Q ss_conf             999758867899999998629--972
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQR--KDL   27 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~h--p~~   27 (311)
                      |||||=||..=..|+-||++-  |..
T Consensus       364 vAIVGPTGAGKTTLiNLLQRVydP~~  389 (592)
T TIGR01192       364 VAIVGPTGAGKTTLINLLQRVYDPKV  389 (592)
T ss_pred             EEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf             89877899717899887753106986


No 450
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=43.43  E-value=22  Score=15.38  Aligned_cols=30  Identities=17%  Similarity=0.280  Sum_probs=24.5

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             99975886789999999862997289999653
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |.|||| |.||..+--.|.++ .+++..+..+
T Consensus         8 V~IvGa-Gp~Gl~lAl~La~~-G~~v~lie~~   37 (386)
T PRK07494          8 IAVSGG-GPAGLAAAIALASA-GASVALVAPA   37 (386)
T ss_pred             EEEECC-CHHHHHHHHHHHHC-CCCEEEEECC
T ss_conf             899990-68999999999878-9988999579


No 451
>PRK13059 putative lipid kinase; Reviewed
Probab=43.29  E-value=22  Score=15.36  Aligned_cols=83  Identities=14%  Similarity=0.024  Sum_probs=51.6

Q ss_pred             CCEEEEEC--CCC-----HHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHC
Q ss_conf             90799975--886-----7899999998629972899996-530078600667747998999938983789999998612
Q gi|254780294|r    1 MYKIFIDG--EHG-----TTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKN   72 (311)
Q Consensus         1 M~kVaIvG--ATG-----~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~   72 (311)
                      |.|+.++=  ++|     -.-.+++++|+++ .+++..+. .+..+.....+..-+++|+++-+-+++.-.+.+..+.+.
T Consensus         1 Mkk~~~I~NP~sG~g~~~~~~~~i~~~l~~~-~~~~~~~~t~~~~~~~~a~~~~~~~~d~vv~~GGDGTinevvngl~~~   79 (294)
T PRK13059          1 MKKVKFIYNPYSGENAIISELDKVIEIHQKY-GYLVVPYRISLGCDLKEAFKDIDESYKYILIAGGDGTVDNVVNAMKKL   79 (294)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHC
T ss_conf             9779999997668866688999999999977-988999985356089999998874898899995678899999999856


Q ss_pred             CCCE--EEECCCCC
Q ss_conf             5848--98227630
Q gi|254780294|r   73 GINS--RIIDTSTA   84 (311)
Q Consensus        73 g~~~--~vid~ss~   84 (311)
                      +...  -||-..+.
T Consensus        80 ~~~~~lgiiP~GTg   93 (294)
T PRK13059         80 NIDIPIGILPVGTA   93 (294)
T ss_pred             CCCCCEEEEECCCC
T ss_conf             99985799826775


No 452
>PRK08774 consensus
Probab=43.15  E-value=23  Score=15.35  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=26.2

Q ss_pred             CCE---EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC
Q ss_conf             907---99975886789999999862997289999653
Q gi|254780294|r    1 MYK---IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE   35 (311)
Q Consensus         1 M~k---VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~   35 (311)
                      |.+   |.|||| |.||..+--.|.++ .+.+..+-.+
T Consensus         1 M~~~~DVlIVGg-GpvGl~lA~~La~~-G~~v~liE~~   36 (402)
T PRK08774          1 MTHPHDVLIVGG-GLVGSSLAIALDRI-GLDVGLVEAT   36 (402)
T ss_pred             CCCCCCEEEECC-CHHHHHHHHHHHCC-CCCEEEEECC
T ss_conf             989987899991-69999999999668-9978999379


No 453
>PRK12743 acetoin dehydrogenase; Provisional
Probab=42.87  E-value=23  Score=15.32  Aligned_cols=87  Identities=14%  Similarity=0.077  Sum_probs=47.4

Q ss_pred             CCEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC-HHHHCCCCEEEECCCC---HHHHHHHHHHHH-CC
Q ss_conf             907999-758867899999998629972899996-5300786006-6774799899993898---378999999861-25
Q gi|254780294|r    1 MYKIFI-DGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR-EDLLNAADVSILCLPD---VASLEIIQLIKK-NG   73 (311)
Q Consensus         1 M~kVaI-vGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~-~~~~~~~Divf~a~p~---~~s~~~~~~~~~-~g   73 (311)
                      |.||+| -||++=.|+..-+.|.++- .++.... +++..-++.. +..-.+..+.++..+-   +..+.+...+.+ -|
T Consensus         1 M~KValITGgs~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G   79 (253)
T PRK12743          1 MAQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLG   79 (253)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC
T ss_conf             99989990758899999999999879-98999748997999999999994599189999048999999999999999819


Q ss_pred             CCEEEECCCCCHHHH
Q ss_conf             848982276303555
Q gi|254780294|r   74 INSRIIDTSTAHRIA   88 (311)
Q Consensus        74 ~~~~vid~ss~~R~~   88 (311)
                      .--.+|.|++.....
T Consensus        80 ~iDilVNnAG~~~~~   94 (253)
T PRK12743         80 RLDVLVNNAGAMTKA   94 (253)
T ss_pred             CCCEEEECCCCCCCC
T ss_conf             998999899899999


No 454
>PRK13949 shikimate kinase; Provisional
Probab=42.86  E-value=23  Score=15.32  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=26.9

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC
Q ss_conf             907999758867899999998629---9728999965300786006
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~   43 (311)
                      |.||-++|-.|..=..+=+.|+++   |.+++-.+= ++..|+++.
T Consensus         1 Mk~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~I-e~~~g~sI~   45 (169)
T PRK13949          1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFI-ENRFHKTVG   45 (169)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH-HHHHCCCHH
T ss_conf             983899799999889999999999599979784999-998599999


No 455
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=42.83  E-value=23  Score=15.32  Aligned_cols=87  Identities=24%  Similarity=0.383  Sum_probs=53.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--------ECCCCC-----CCCCC---------------------HHHH
Q ss_conf             0799975886789999999862997289999--------653007-----86006---------------------6774
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--------PCEERH-----NLRYR---------------------EDLL   47 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--------~s~~~a-----g~~~~---------------------~~~~   47 (311)
                      +-|.|||| |.+|.-.-+-|+.+- +.+.++        +|+++.     |-+|.                     ...+
T Consensus         6 ~DVvIIGg-Gi~Ga~iArdla~rG-l~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~Aphlv   83 (545)
T PRK11101          6 TDVIIIGG-GATGAGIARDCALRG-LRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV   83 (545)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCHHHC
T ss_conf             76899998-689999999998679-9399998997616200120127122523123370999999998999998591640


Q ss_pred             CCCCEEEECCCCHH---HHHHHHHHHHCCCCEEEECCCCCHHHHHH
Q ss_conf             79989999389837---89999998612584898227630355543
Q gi|254780294|r   48 NAADVSILCLPDVA---SLEIIQLIKKNGINSRIIDTSTAHRIAPG   90 (311)
Q Consensus        48 ~~~Divf~a~p~~~---s~~~~~~~~~~g~~~~vid~ss~~R~~~~   90 (311)
                      +.....|.++|.+.   ...+.......|.....+|...+.+++|.
T Consensus        84 ~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~eP~  129 (545)
T PRK11101         84 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA  129 (545)
T ss_pred             CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCC
T ss_conf             3068638971502267899999999976998477689999975868


No 456
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=42.78  E-value=23  Score=15.31  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=48.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEEC-CCCCCCCC---------CH----HHHCCCCEEEECCCCHHH---
Q ss_conf             07999758867899999998629972--8999965-30078600---------66----774799899993898378---
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPC-EERHNLRY---------RE----DLLNAADVSILCLPDVAS---   62 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s-~~~ag~~~---------~~----~~~~~~Divf~a~p~~~s---   62 (311)
                      .||-|||+ |-.|+++.+.|.++|..  ++.-+-. +...+...         ++    ..-.++|-|++|+|....   
T Consensus       129 rrvLIIG~-g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~~~~pvlg~~~~l~~~i~~~~ideViia~~~~~~~~~  207 (451)
T TIGR03023       129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAEKRI  207 (451)
T ss_pred             CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH
T ss_conf             54999968-68999999999719436848999983885444445799736989999999996799889995483556899


Q ss_pred             HHHHHHHHHCCCCEEEE
Q ss_conf             99999986125848982
Q gi|254780294|r   63 LEIIQLIKKNGINSRII   79 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vi   79 (311)
                      .+....+.+.|..++++
T Consensus       208 ~~li~~~~~~~v~v~~~  224 (451)
T TIGR03023       208 LELLDALEDLTVDVRLV  224 (451)
T ss_pred             HHHHHHHHHCCCEEEEE
T ss_conf             99999986459879994


No 457
>KOG0405 consensus
Probab=42.34  E-value=23  Score=15.27  Aligned_cols=12  Identities=33%  Similarity=0.011  Sum_probs=6.1

Q ss_pred             CEEEEEEEECCC
Q ss_conf             769999972221
Q gi|254780294|r  281 PYINIIAVFDNL  292 (311)
Q Consensus       281 ~~~~v~s~~DNL  292 (311)
                      +-=.+|+++|-.
T Consensus       316 nvp~I~avGDv~  327 (478)
T KOG0405         316 NVPSIWAVGDVT  327 (478)
T ss_pred             CCCCEEEECCCC
T ss_conf             887258730333


No 458
>PRK11914 diacylglycerol kinase; Reviewed
Probab=42.28  E-value=23  Score=15.27  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=53.3

Q ss_pred             CCEEEEE-------CCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCCCC-CHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf             9079997-------58867899999998629972899996530-078600-66774799899993898378999999861
Q gi|254780294|r    1 MYKIFID-------GEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RHNLRY-REDLLNAADVSILCLPDVASLEIIQLIKK   71 (311)
Q Consensus         1 M~kVaIv-------GATG~vG~~li~lL~~hp~~~l~~l~s~~-~ag~~~-~~~~~~~~Divf~a~p~~~s~~~~~~~~~   71 (311)
                      |.||.|+       |...-..+++++.|.+| .+++..+..+. .-...+ ++...+++|.++.+-+++.-.+.+..+.+
T Consensus         6 m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~t~~~~~a~~la~~a~~~g~d~vv~~GGDGTv~ev~~~l~~   84 (304)
T PRK11914          6 IGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVEIVGTDAHHARHLVAAALAKGTDALVVVGGDGVISNALQVLAG   84 (304)
T ss_pred             CCEEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf             8669999997779985688999999999987-990999932787899999998886499699999562598898764135


Q ss_pred             CCCCEEEECCCCC
Q ss_conf             2584898227630
Q gi|254780294|r   72 NGINSRIIDTSTA   84 (311)
Q Consensus        72 ~g~~~~vid~ss~   84 (311)
                      .....-+|-..+.
T Consensus        85 ~~~plgiiP~GTg   97 (304)
T PRK11914         85 TDIPLGIIPAGTG   97 (304)
T ss_pred             CCCEEEEECCCCH
T ss_conf             7860899638872


No 459
>pfam09314 DUF1972 Domain of unknown function (DUF1972). Members of this family of functionally uncharacterized domains are found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=42.23  E-value=23  Score=15.26  Aligned_cols=57  Identities=21%  Similarity=0.303  Sum_probs=31.8

Q ss_pred             CCEEEEECCCCH----HHHH-HHHHHHCC---CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCC
Q ss_conf             907999758867----8999-99998629---97289999653007860066774799899993898
Q gi|254780294|r    1 MYKIFIDGEHGT----TGLK-IRSRIVQR---KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPD   59 (311)
Q Consensus         1 M~kVaIvGATG~----vG~~-li~lL~~h---p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~   59 (311)
                      |.||||+|..|.    .|=| +++-|..+   ...++...+++....++  ....+++.+...-.|.
T Consensus         1 mkKIaiiGtRGiPa~yGGfEt~ve~L~~~l~~~~~~v~V~c~~~~~~~~--~~~y~gv~~~~i~~~~   65 (185)
T pfam09314         1 MQHVFIIGSRGLPAKYGGFETFVEKLVEHQQSKNIKYHVACLSENSAKS--HFEYKGADCFYIKVPK   65 (185)
T ss_pred             CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCEECCEEEEEECCCC
T ss_conf             9569999588888534729999999998885389569999817988788--8567888999947866


No 460
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=42.13  E-value=23  Score=15.25  Aligned_cols=10  Identities=40%  Similarity=0.717  Sum_probs=3.7

Q ss_pred             CCCCCCCCCC
Q ss_conf             3333561000
Q gi|254780294|r  148 GYTGGGKKLI  157 (311)
Q Consensus       148 g~sgaG~~~~  157 (311)
                      |-||+||+.+
T Consensus       356 G~SGsGKSTL  365 (547)
T PRK10522        356 GGNGSGKSTL  365 (547)
T ss_pred             CCCCCCHHHH
T ss_conf             9999977999


No 461
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=41.79  E-value=24  Score=15.22  Aligned_cols=30  Identities=17%  Similarity=0.205  Sum_probs=25.3

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             79997588678999999986299728999965
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      +|+|||| |.+|.-+-.-|++| -.+++.+..
T Consensus       258 ~VaVIGA-GIAGas~A~~LA~r-G~~VtVlDr  287 (660)
T PRK01747        258 DAAIIGG-GIAGAALALALARR-GWQVTLYEA  287 (660)
T ss_pred             CEEEECC-HHHHHHHHHHHHHC-CCEEEEEEC
T ss_conf             1899893-89999999999978-996899947


No 462
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=41.47  E-value=24  Score=15.19  Aligned_cols=30  Identities=27%  Similarity=0.247  Sum_probs=19.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             90799975886789999999862997289999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI   32 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l   32 (311)
                      |++|.|+|+ |-.|...-..+.+. -.++..+
T Consensus         1 M~dviVIG~-GpaG~~AA~~aa~~-G~kV~lI   30 (467)
T PRK07845          1 MTRIVIIGG-GPGGYEAALVAAQL-GADVTVI   30 (467)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHC-CCEEEEE
T ss_conf             981999874-88999999999978-7959999


No 463
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=41.44  E-value=24  Score=15.19  Aligned_cols=49  Identities=10%  Similarity=0.186  Sum_probs=38.2

Q ss_pred             CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHCCCC
Q ss_conf             7998999938983789999998612584898227630355543--1100210
Q gi|254780294|r   48 NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG--WVYGFPE   97 (311)
Q Consensus        48 ~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~--vpl~vPE   97 (311)
                      ++-.+++.|.....|...+..+.+.|+ ..|.+..+-|+-|.+  .|+.=|.
T Consensus        57 kd~~ivvyC~sG~RS~~Aa~~L~~~Gy-~~V~~l~GG~~aW~~aGlPvErp~  107 (379)
T PRK08762         57 HDREIVLICQSGKRSAHAAADLRELGY-RRVASVAGGTSAWRDAGLPLERPT  107 (379)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-CCCEECCCCHHHHHHCCCCCCCCC
T ss_conf             998599999998799999999997699-660886574999997799855588


No 464
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=41.08  E-value=24  Score=15.15  Aligned_cols=22  Identities=18%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             07999758867899999998629
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR   24 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h   24 (311)
                      .+|+|-|. |-||..+.+.|.+.
T Consensus        29 k~VaIqG~-GnVG~~~A~~l~~~   50 (200)
T cd01075          29 KTVAVQGL-GKVGYKLAEHLLEE   50 (200)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHC
T ss_conf             99999898-79999999999967


No 465
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=40.90  E-value=24  Score=15.13  Aligned_cols=81  Identities=14%  Similarity=0.134  Sum_probs=46.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEEC--CCCCCC---C-C------C-HHHHCCCCEEEECCCCHHHHHHH
Q ss_conf             07999758867899999998629972--8999965--300786---0-0------6-67747998999938983789999
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPC--EERHNL---R-Y------R-EDLLNAADVSILCLPDVASLEII   66 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s--~~~ag~---~-~------~-~~~~~~~Divf~a~p~~~s~~~~   66 (311)
                      .||.|+|+ |-.++++.+.+.++|+.  ++..+.+  .+..+.   . +      . ...-.++|-+++|+|........
T Consensus       125 rrvliiG~-~~~a~~l~~~l~~~~~~g~~v~G~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~ideV~ial~~~~~~~~~  203 (442)
T TIGR03013       125 RRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPV  203 (442)
T ss_pred             EEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHCCCHH
T ss_conf             06999977-19999999998619779818999996798633467666578778999999968999999967821105089


Q ss_pred             HH---HHHCCCCEEEECCCCCH
Q ss_conf             99---86125848982276303
Q gi|254780294|r   67 QL---IKKNGINSRIIDTSTAH   85 (311)
Q Consensus        67 ~~---~~~~g~~~~vid~ss~~   85 (311)
                      ..   +...|  +.+.+....+
T Consensus       204 ~~l~~~~~~~--v~v~~~p~~~  223 (442)
T TIGR03013       204 DELLECKLSG--IEVVDAPSFF  223 (442)
T ss_pred             HHHHHHHHCC--EEEEECCCHH
T ss_conf             9999878679--0999934267


No 466
>PRK12862 malic enzyme; Reviewed
Probab=40.84  E-value=24  Score=15.13  Aligned_cols=70  Identities=16%  Similarity=0.228  Sum_probs=48.7

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC--CCCC-----CC------------HHHHCCCCEEEE-CCCC
Q ss_conf             07999758867899999998629--9728999965300--7860-----06------------677479989999-3898
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER--HNLR-----YR------------EDLLNAADVSIL-CLPD   59 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~--ag~~-----~~------------~~~~~~~Divf~-a~p~   59 (311)
                      .||.|.|| |..|....++|..-  +.-++....|+.-  .|.+     ++            ++.+.+.|+.+- +.|+
T Consensus       193 ~kiv~~Ga-Gaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S~~~  271 (761)
T PRK12862        193 VKLVASGA-GAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAG  271 (761)
T ss_pred             EEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCC
T ss_conf             18999788-78899999999983998101799946787778877430799999965079665999966898899806899


Q ss_pred             HHHHHHHHHHHHC
Q ss_conf             3789999998612
Q gi|254780294|r   60 VASLEIIQLIKKN   72 (311)
Q Consensus        60 ~~s~~~~~~~~~~   72 (311)
                      -++.+++..-.+.
T Consensus       272 ~~~~e~v~~Ma~~  284 (761)
T PRK12862        272 VLKPEMVKKMAPR  284 (761)
T ss_pred             CCCHHHHHHHCCC
T ss_conf             9999999852737


No 467
>KOG2304 consensus
Probab=40.82  E-value=23  Score=15.24  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC
Q ss_conf             90799975886789999999862997289999653007
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH   38 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a   38 (311)
                      |.+|+|+|| |+-|.-+-++-... -+++.++.+++++
T Consensus        11 ~~~V~ivGa-G~MGSGIAQv~a~s-g~~V~l~d~~~~a   46 (298)
T KOG2304          11 IKNVAIVGA-GQMGSGIAQVAATS-GLNVWLVDANEDA   46 (298)
T ss_pred             CCCEEEECC-CCCCHHHHHHHHHC-CCCEEEECCCHHH
T ss_conf             662478756-64320399998851-9946985477789


No 468
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=40.62  E-value=25  Score=15.11  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC
Q ss_conf             79997588678999999986299728999965
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC   34 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s   34 (311)
                      .|+|||| |.||..+--.|.++ .+.+..+-.
T Consensus         7 DV~IvG~-G~vGl~lAl~La~~-G~~V~viE~   36 (391)
T PRK08020          7 EIAIVGG-GMVGGALALGLAQH-GFSVAVIEH   36 (391)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC
T ss_conf             4899993-69999999999866-997899948


No 469
>KOG3923 consensus
Probab=40.52  E-value=25  Score=15.10  Aligned_cols=64  Identities=17%  Similarity=0.034  Sum_probs=32.8

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHC------CCCEEEEEEECCCCCCCCCCHH--HHCCCCEEEECCCCHHHHHHHH
Q ss_conf             90799975886789999999862------9972899996530078600667--7479989999389837899999
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQ------RKDLCLLSIPCEERHNLRYRED--LLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~------hp~~~l~~l~s~~~ag~~~~~~--~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      |.||||||| |-+|..---.|.+      -|..+++.++-+.- -++.++.  -+-..|.-+ -.|.+..++|-.
T Consensus         3 ~~~iaViGa-GVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~-e~T~s~~~AGl~~p~~~~-~~~~~~~~~w~k   74 (342)
T KOG3923           3 TPRIAVIGA-GVIGLSTALCILELYHSVLIPVAKVTVISDRFT-EDTTSDVAAGLFRPDLSD-GTPQEINRQWGK   74 (342)
T ss_pred             CCCEEEECC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCCCEEECCCCC-CCCHHHHHHHHH
T ss_conf             760899747-710156899999865412688622787457786-555554346421114678-970788999879


No 470
>PRK10651 transcriptional regulator NarL; Provisional
Probab=40.41  E-value=25  Score=15.09  Aligned_cols=79  Identities=15%  Similarity=0.277  Sum_probs=49.9

Q ss_pred             CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             0799975886789999999862997289999653007860066774799899993--89837899999986125848982
Q gi|254780294|r    2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRII   79 (311)
Q Consensus         2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~vi   79 (311)
                      +||.||----.+-.-|..+|+.+|.+++...+++.......  ..-...|++++-  +|+.-.-+.+..+.+.+..++|+
T Consensus         7 irVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~--~~~~~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~ii   84 (216)
T PRK10651          7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIEL--AESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIV   84 (216)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH--HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             78999839999999999999758993899998999999999--8707999999959999988876423233457887467


Q ss_pred             CCC
Q ss_conf             276
Q gi|254780294|r   80 DTS   82 (311)
Q Consensus        80 d~s   82 (311)
                      =.|
T Consensus        85 vlt   87 (216)
T PRK10651         85 VFS   87 (216)
T ss_pred             EEE
T ss_conf             630


No 471
>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]
Probab=40.25  E-value=25  Score=15.07  Aligned_cols=110  Identities=20%  Similarity=0.144  Sum_probs=61.1

Q ss_pred             EEEEEC---CCCHHHHHHHHHHHCCCCEEEEEEECCC---CCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE
Q ss_conf             799975---8867899999998629972899996530---0786006677479989999389837899999986125848
Q gi|254780294|r    3 KIFIDG---EHGTTGLKIRSRIVQRKDLCLLSIPCEE---RHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS   76 (311)
Q Consensus         3 kVaIvG---ATG~vG~~li~lL~~hp~~~l~~l~s~~---~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~   76 (311)
                      ||.|+|   |=|++...++....++=.++.....-.+   .-| .+......++|+++++==..-+.+-...+.+.|.++
T Consensus        38 ~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g-~~~~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~v  116 (491)
T COG0608          38 KILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG-AIRKLKEEGADLIITVDNGSGSLEEIARAKELGIDV  116 (491)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE
T ss_conf             6999787885177899999999997698268974774455530-676556508988999779973799999987369978


Q ss_pred             EEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC
Q ss_conf             9822763035554311002100047765204960772584
Q gi|254780294|r   77 RIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG  116 (311)
Q Consensus        77 ~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn  116 (311)
                      .|+|....-..-|+   .+--+||.....-......+..|
T Consensus       117 IVtDHH~~~~~~p~---~~~ivNP~~~~~~~~~~~lag~g  153 (491)
T COG0608         117 IVTDHHPPGEELPD---AVAIVNPNLPGCDYPFKELAGVG  153 (491)
T ss_pred             EEECCCCCCCCCCC---CCEEECCCCCCCCCCCCCEEHHH
T ss_conf             99789999776886---52685888788787610010569


No 472
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=40.08  E-value=25  Score=15.06  Aligned_cols=28  Identities=14%  Similarity=0.152  Sum_probs=15.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf             799975886789999999862997289999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI   32 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l   32 (311)
                      -|.|+|+ |-.|..--..+.+. -.++..+
T Consensus         8 DviVIGa-GpaG~~aA~~aa~~-G~kV~vi   35 (465)
T PRK05249          8 DAVVIGS-GPAGEGAAMQAAKL-GKRVAVI   35 (465)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCCEEEE
T ss_conf             9899997-78999999999978-9929999


No 473
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=40.03  E-value=25  Score=15.05  Aligned_cols=53  Identities=8%  Similarity=0.080  Sum_probs=31.4

Q ss_pred             CEEEEEEECCCCCCCC--CCHHH--HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC
Q ss_conf             7289999653007860--06677--4799899993898378999999861258489822
Q gi|254780294|r   26 DLCLLSIPCEERHNLR--YREDL--LNAADVSILCLPDVASLEIIQLIKKNGINSRIID   80 (311)
Q Consensus        26 ~~~l~~l~s~~~ag~~--~~~~~--~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid   80 (311)
                      .+|+..........+.  .-...  -.++++++-...++.+....+.+.+.|  +.+|.
T Consensus        41 ~ielv~~D~~~~p~~a~~~a~~li~~d~V~aiiG~~~S~~~~a~~~~~~~~~--vp~i~   97 (336)
T cd06326          41 KIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTPTTAAALPLLEEAG--VPLVG   97 (336)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC--CEEEE
T ss_conf             9899996599998999999999985289569988889878999999999837--62783


No 474
>PRK06857 consensus
Probab=39.43  E-value=26  Score=14.99  Aligned_cols=110  Identities=13%  Similarity=0.101  Sum_probs=58.9

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H
Q ss_conf             99999986299728999965300786006677479989999389837899999986125848-----98227630355-5
Q gi|254780294|r   15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A   88 (311)
Q Consensus        15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~   88 (311)
                      .++++.|.+++.+-+....+.+.+-.-.+--.-.++.++=..+-...+.+....+.+...+.     .|.|...+.+. +
T Consensus         3 ~~ii~~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~   82 (209)
T PRK06857          3 EQIIEKLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAYPDMLIGAGTVLTPEQVDAAKE   82 (209)
T ss_pred             HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH
T ss_conf             99999999799799997599999999999999879988999589932999999999758994899993767999999998


Q ss_pred             HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             431-100210004776520496077258421133112
Q gi|254780294|r   89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      .+. -++-|-.+++..+.....++..-|||+|.+=++
T Consensus        83 aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~  119 (209)
T PRK06857         83 AGADFIVSPGFNPNTVKYCQQLNIPIVPGVNNPSLVE  119 (209)
T ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf             3999999089999999999974996547879999999


No 475
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295   This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=39.32  E-value=19  Score=15.87  Aligned_cols=29  Identities=24%  Similarity=0.385  Sum_probs=22.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCC----CEEEEEE
Q ss_conf             79997588678999999986299----7289999
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRK----DLCLLSI   32 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp----~~~l~~l   32 (311)
                      +|.|||+ |+||..|===|..+-    ...+..+
T Consensus         1 D~iIvGG-Gl~G~~lAlAL~~~~G~~~~~~i~l~   33 (425)
T TIGR01984         1 DVIIVGG-GLVGLSLALALSRLSGREGKLKIALI   33 (425)
T ss_pred             CEEEECC-HHHHHHHHHHHHHCCCCCCCCEEEEE
T ss_conf             9788856-58999999998506775576158986


No 476
>PRK13748 putative mercuric reductase; Provisional
Probab=39.31  E-value=26  Score=14.98  Aligned_cols=31  Identities=10%  Similarity=0.118  Sum_probs=12.3

Q ss_pred             CCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEECC
Q ss_conf             99899993-8983789999998612584898227
Q gi|254780294|r   49 AADVSILC-LPDVASLEIIQLIKKNGINSRIIDT   81 (311)
Q Consensus        49 ~~Divf~a-~p~~~s~~~~~~~~~~g~~~~vid~   81 (311)
                      .+|+++.- -|.+.+..  -++.+.|..+.+|+.
T Consensus        98 ~yDliVIG~GpaG~~AA--~~Aa~~G~kValVE~  129 (561)
T PRK13748         98 PLHVAVIGSGGAAMAAA--LKAVEQGARVTLIER  129 (561)
T ss_pred             CCCEEEECCCHHHHHHH--HHHHHCCCEEEEEEC
T ss_conf             87689989588999999--999978997999947


No 477
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701    Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se ..
Probab=39.18  E-value=12  Score=17.05  Aligned_cols=39  Identities=26%  Similarity=0.279  Sum_probs=26.7

Q ss_pred             EEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             76512333356100000013444322343322222344444342013
Q gi|254780294|r  143 INAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEIT  189 (311)
Q Consensus       143 ~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~  189 (311)
                      +.+.+|-|||||+.+-.        ..+.|+.+.......+|..++-
T Consensus        36 cv~L~G~SGaGKSTlLk--------~lYaNYlp~~G~i~~~H~G~~~   74 (224)
T TIGR02324        36 CVALSGPSGAGKSTLLK--------SLYANYLPDSGRILVRHEGAWV   74 (224)
T ss_pred             EEEEECCCCCCHHHHHH--------HHHHCCCCCCCEEEEEECCHHH
T ss_conf             58853688876789999--------7663047468677776240476


No 478
>PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=39.13  E-value=15  Score=16.36  Aligned_cols=10  Identities=40%  Similarity=0.391  Sum_probs=9.2

Q ss_pred             CCEEEEECCC
Q ss_conf             9079997588
Q gi|254780294|r    1 MYKIFIDGEH   10 (311)
Q Consensus         1 M~kVaIvGAT   10 (311)
                      |.||||.|.|
T Consensus         1 MkkIgifGGS   10 (173)
T PRK08887          1 MKKIAVFGSA   10 (173)
T ss_pred             CCEEEEEEEC
T ss_conf             9489997428


No 479
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes.  FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=39.05  E-value=26  Score=14.96  Aligned_cols=91  Identities=10%  Similarity=0.068  Sum_probs=54.7

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC------------CCCCCC-----------------------HHH
Q ss_conf             7999758867899999998629-9728999965300------------786006-----------------------677
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER------------HNLRYR-----------------------EDL   46 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~------------ag~~~~-----------------------~~~   46 (311)
                      ||.|+|-=|.-+..+-++...- ...++..+-....            .|+++.                       ...
T Consensus         2 kI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aA~e~~~~I~~~   81 (303)
T cd02191           2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDNI   81 (303)
T ss_pred             CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             18999878813999999998299971799995769998359998289727666688989889458999999999999998


Q ss_pred             HCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC
Q ss_conf             4799899993------89837899999986125848982276303555431100
Q gi|254780294|r   47 LNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG   94 (311)
Q Consensus        47 ~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~   94 (311)
                      +++.|++|.+      ++.+.+.-.+..+.+.|.- +|-=-+-.|+++...-..
T Consensus        82 l~~~d~vfi~AGmGGGTGtGaaPviA~~Ake~g~l-tvavVt~PF~~EG~~r~~  134 (303)
T cd02191          82 PVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTL-TVAVVTLPFSDEGGIRML  134 (303)
T ss_pred             HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHH
T ss_conf             65699899998418970042899999999975993-899997872551199999


No 480
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=38.94  E-value=26  Score=14.95  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=23.9

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE
Q ss_conf             7999758867899999998629972899996
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP   33 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~   33 (311)
                      .|+|||| |-+|..|=.+|..+ -++...+-
T Consensus         4 ~V~IVGa-GP~GL~LA~lLar~-GI~~vVlE   32 (392)
T PRK08243          4 QVAIIGA-GPAGLLLGQLLHLA-GIDSVVLE   32 (392)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCCEEEEE
T ss_conf             8999997-79999999999977-99889997


No 481
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=38.83  E-value=26  Score=14.94  Aligned_cols=23  Identities=13%  Similarity=0.332  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCC
Q ss_conf             78999999861258489822763
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTST   83 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss   83 (311)
                      +..|++..+...|.++.+++.+.
T Consensus       179 ig~E~A~~~~~lG~~Vtli~~~~  201 (453)
T PRK07846        179 IAAEFAHVFSALGVRVTVVNRSD  201 (453)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECC
T ss_conf             79999999995299268997465


No 482
>PRK13947 shikimate kinase; Provisional
Probab=38.67  E-value=26  Score=14.92  Aligned_cols=42  Identities=14%  Similarity=0.071  Sum_probs=26.2

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC
Q ss_conf             907999758867899999998629---9728999965300786006
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR   43 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~   43 (311)
                      |.||.++|-.|-.=..+=+.|+++   |.+++-.+= ++..|+++.
T Consensus         1 mknI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~I-e~~~g~sI~   45 (171)
T PRK13947          1 MKNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEI-EKMAGMTVS   45 (171)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH-HHHCCCCHH
T ss_conf             985899799999889999999999796989874999-988299889


No 483
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=38.65  E-value=26  Score=14.92  Aligned_cols=37  Identities=16%  Similarity=0.155  Sum_probs=27.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCC
Q ss_conf             907999758867899999998629-972899996530078
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHN   39 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag   39 (311)
                      +++|+|||| |.-|.-+...|.+. +.. +..|-.++..|
T Consensus         8 ~~~v~IIGa-G~sGlaaa~~L~~~g~~~-~~i~Ek~~~~G   45 (443)
T COG2072           8 HTDVAIIGA-GQSGLAAAYALKQAGVPD-FVIFEKRDDVG   45 (443)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHCCCCC-EEEEEECCCCC
T ss_conf             554899898-788999999999759986-79997057667


No 484
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems.  The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=38.64  E-value=26  Score=14.92  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=32.3

Q ss_pred             CEEEEEEECCCCCC--CCCCHHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC
Q ss_conf             72899996530078--60066774--79989999389837899999986125848982276
Q gi|254780294|r   26 DLCLLSIPCEERHN--LRYREDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS   82 (311)
Q Consensus        26 ~~~l~~l~s~~~ag--~~~~~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s   82 (311)
                      .+++....+.....  .+.-.+..  .++++++-....+.+....+.+.+.+.  .+|..+
T Consensus        40 ~iel~~~D~~~~~~~a~~~~~~l~~~~~v~~iiG~~~s~~~~a~~~~~~~~~v--p~i~~~   98 (299)
T cd04509          40 KLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEALKI--PLISPG   98 (299)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CEECCC
T ss_conf             88999967999989999999998611694699778874889999999998289--422267


No 485
>PRK01395 V-type ATP synthase subunit F; Provisional
Probab=38.37  E-value=16  Score=16.35  Aligned_cols=30  Identities=10%  Similarity=0.113  Sum_probs=14.0

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHHCCCCEEEE
Q ss_conf             9989999389837899999986125848982
Q gi|254780294|r   49 AADVSILCLPDVASLEIIQLIKKNGINSRII   79 (311)
Q Consensus        49 ~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi   79 (311)
                      ++|+ |-+...+.+++...++.+.++.+.+|
T Consensus        22 G~dv-fpv~~~eEa~~~l~~La~~~y~II~I   51 (104)
T PRK01395         22 GFDV-FPVIEEQEARNTLRKLAMEDYAIIYI   51 (104)
T ss_pred             CEEE-EECCCHHHHHHHHHHHHHCCEEEEEE
T ss_conf             8047-85488799999999998679279997


No 486
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=38.33  E-value=27  Score=14.89  Aligned_cols=32  Identities=22%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC
Q ss_conf             7999758867899999998629-97289999653
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE   35 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~   35 (311)
                      -|.|||| |.||..+--.|.++ +.+.+..+...
T Consensus         3 DV~IVGa-GpvGl~lAl~L~~~G~~~~v~vie~~   35 (403)
T PRK07333          3 DVVIAGG-GYVGLALAVALKQAAPHLPVIVVDAA   35 (403)
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf             3999994-69999999999846999669998288


No 487
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=38.31  E-value=16  Score=16.29  Aligned_cols=23  Identities=13%  Similarity=0.001  Sum_probs=13.5

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHC
Q ss_conf             90799975886789999999862
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQ   23 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~   23 (311)
                      |.||||+||=--==..|.+.|.+
T Consensus         1 M~kIgIIgAM~~Ev~~l~~~~~~   23 (236)
T PRK06714          1 MKRIAIVAAWEPELTYLHQSYPS   23 (236)
T ss_pred             CCEEEEEECCHHHHHHHHHHHCC
T ss_conf             96699995289999999997300


No 488
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=38.31  E-value=27  Score=14.88  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=21.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             7999758867899999998629972899996530078
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN   39 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag   39 (311)
                      ||||||| |=.|..--.-|... -.+++.+-+-...|
T Consensus       434 KVAVIGs-GPAGLs~A~~Lar~-G~~VTVfEal~~~G  468 (993)
T PRK12775        434 KVAIVGS-GPAGLAAAADLTRY-GVETTVYEALHVLG  468 (993)
T ss_pred             CEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC
T ss_conf             0899783-78899999999977-99648971688899


No 489
>PTZ00293 thymidine kinase; Provisional
Probab=38.27  E-value=27  Score=14.88  Aligned_cols=47  Identities=15%  Similarity=0.103  Sum_probs=29.0

Q ss_pred             HHCCCCEE------EECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH--HHHHCCC
Q ss_conf             74799899------993898378999999861258489822763035554--3110021
Q gi|254780294|r   46 LLNAADVS------ILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAP--GWVYGFP   96 (311)
Q Consensus        46 ~~~~~Div------f~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~--~vpl~vP   96 (311)
                      .+.++|++      ||  |+  -.+|+..+++.|..+.|--+.++||..|  .++-.+|
T Consensus        74 ~~~~~DVIgIDEaQFF--~D--Lvdf~e~lAn~GK~VIVAGLDGDFkRkPFG~IldLIP  128 (284)
T PTZ00293         74 TWKRFDVLAIDEGQFF--SD--LVDFCNTAADAGKVVMVSALDGDYRRKPFGQICELVP  128 (284)
T ss_pred             HHHCCCEEEEECHHCC--CC--HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHH
T ss_conf             7535888999703416--23--8999999986899899994587633266623877742


No 490
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=37.95  E-value=27  Score=14.85  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHCCCCEEEECCCCC
Q ss_conf             789999998612584898227630
Q gi|254780294|r   61 ASLEIIQLIKKNGINSRIIDTSTA   84 (311)
Q Consensus        61 ~s~~~~~~~~~~g~~~~vid~ss~   84 (311)
                      ++-+++..+...|.++.+++.+..
T Consensus       168 ig~E~A~~~~~lG~~Vtli~~~~~  191 (438)
T PRK07251        168 IGLEFAGLYNKLGSKVTVLDAAST  191 (438)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCC
T ss_conf             588999999834876899984610


No 491
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971    Synonym: dark protochlorophyllide reductase    Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite.    The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=37.72  E-value=11  Score=17.28  Aligned_cols=17  Identities=12%  Similarity=0.071  Sum_probs=8.2

Q ss_pred             CCCCCCHHHHHHHHHHH
Q ss_conf             57754489988665422
Q gi|254780294|r  222 LSWKTNSEELHSIFQEY  238 (311)
Q Consensus       222 ~~~~~~~~~~~~~~~~~  238 (311)
                      ...+-..+++.+.|.+.
T Consensus       229 ee~~p~~~~~~~~y~~~  245 (275)
T TIGR01281       229 EESGPELEEVTAEYLKM  245 (275)
T ss_pred             CCCCCCHHHHHHHHHHH
T ss_conf             58996588999999999


No 492
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=37.69  E-value=27  Score=14.82  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=60.8

Q ss_pred             HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H
Q ss_conf             99999986299728999965300786006677479989999389837899999986125848-----98227630355-5
Q gi|254780294|r   15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A   88 (311)
Q Consensus        15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~   88 (311)
                      .++.++|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+...+.     .|.|.....+. +
T Consensus         6 ~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~   85 (212)
T PRK05718          6 TQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEVPEALIGAGTVLNPEQLAQAIE   85 (212)
T ss_pred             HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH
T ss_conf             36999997698799997489999999999999879978999578961999999999758981796533134889999998


Q ss_pred             HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH
Q ss_conf             431-100210004776520496077258421133112
Q gi|254780294|r   89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA  124 (311)
Q Consensus        89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l  124 (311)
                      .+. -++-|-.+++..+.....++..-|||+|.+=++
T Consensus        86 aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~  122 (212)
T PRK05718         86 AGAQFIVSPGLTPPLLKACQDGPIPLIPGVNTPSELM  122 (212)
T ss_pred             CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH
T ss_conf             4998998489989999999981997657869999999


No 493
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=37.38  E-value=28  Score=14.79  Aligned_cols=85  Identities=13%  Similarity=-0.006  Sum_probs=0.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf             907999758867899999998629-------9728999965300786006677479989999389837899999986125
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR-------KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNG   73 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h-------p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g   73 (311)
                      ..||||+....--|+.+.+.+.+.       ...+..+-.+...-.-.+....-.+.|++|++.....+..+...+.+.|
T Consensus       144 ~k~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~~~~i~~~~pd~v~~~~~~~~~~~~~~q~~~~G  223 (362)
T cd06343         144 NAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELG  223 (362)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf             87389964785777999999999999769968899945777788899999998549399999478468999999999769


Q ss_pred             CCEEEECCCCCH
Q ss_conf             848982276303
Q gi|254780294|r   74 INSRIIDTSTAH   85 (311)
Q Consensus        74 ~~~~vid~ss~~   85 (311)
                      +....+-.+..+
T Consensus       224 ~~~~~~~~~~~~  235 (362)
T cd06343         224 WKPTFLLSSVSA  235 (362)
T ss_pred             CCCCEEEEECCC
T ss_conf             998679873466


No 494
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=37.11  E-value=28  Score=14.77  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=0.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
Q ss_conf             907999758867899999998629972899996530078
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN   39 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag   39 (311)
                      |+++-|||| |+-|..+-++++++ .-.+..+--+++.|
T Consensus         1 ~fd~lIVGa-GlsG~V~A~~a~~~-gk~VLIvekR~HIG   37 (374)
T COG0562           1 MFDYLIVGA-GLSGAVIAEVAAQL-GKRVLIVEKRNHIG   37 (374)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCC
T ss_conf             975899877-62688999999975-98799996256678


No 495
>PRK07024 short chain dehydrogenase; Provisional
Probab=36.57  E-value=29  Score=14.71  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=0.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH----------------------------HHHCCCCE
Q ss_conf             90799975886789999999862997289999653007860066----------------------------77479989
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE----------------------------DLLNAADV   52 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~----------------------------~~~~~~Di   52 (311)
                      ..||-|.|||.=.|+++-+.|.++ -.++...+-+...-+++.+                            +.+..+|+
T Consensus         2 ~~~VlITGassGIG~a~A~~la~~-G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iDi   80 (256)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPDV   80 (256)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE
T ss_conf             998999846029999999999988-9989999898899999999767997699981179999999999999998399879


Q ss_pred             EEECCC
Q ss_conf             999389
Q gi|254780294|r   53 SILCLP   58 (311)
Q Consensus        53 vf~a~p   58 (311)
                      ++.+++
T Consensus        81 linNAG   86 (256)
T PRK07024         81 VIANAG   86 (256)
T ss_pred             EEECCC
T ss_conf             998885


No 496
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=36.40  E-value=29  Score=14.70  Aligned_cols=80  Identities=10%  Similarity=0.076  Sum_probs=0.0

Q ss_pred             EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC---------------------CCCCHHHHCCCCEEEECCCCHHH
Q ss_conf             999758867899999998629972899996530078---------------------60066774799899993898378
Q gi|254780294|r    4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN---------------------LRYREDLLNAADVSILCLPDVAS   62 (311)
Q Consensus         4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag---------------------~~~~~~~~~~~Divf~a~p~~~s   62 (311)
                      |-|-+|+|.||....+|-- .+--.+.-+++...+-                     +.+.+...+++|+-|=+.+.++.
T Consensus       154 vvVSaAaGaVGsvvgQiAK-lkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~  232 (340)
T COG2130         154 VVVSAAAGAVGSVVGQIAK-LKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVL  232 (340)
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCCCHHH
T ss_conf             9997346653068899988-607759996588899899987038713554476569999998789871799974896589


Q ss_pred             HHHHHHHHHCCCCEEEECCCCCH
Q ss_conf             99999986125848982276303
Q gi|254780294|r   63 LEIIQLIKKNGINSRIIDTSTAH   85 (311)
Q Consensus        63 ~~~~~~~~~~g~~~~vid~ss~~   85 (311)
                      -...+.+...+ +..++-.-|.|
T Consensus       233 DAv~~~ln~~a-Ri~~CG~IS~Y  254 (340)
T COG2130         233 DAVLPLLNLFA-RIPVCGAISQY  254 (340)
T ss_pred             HHHHHHHCCCC-CEEEEEEHHHC
T ss_conf             99998623045-22461002533


No 497
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=36.38  E-value=29  Score=14.70  Aligned_cols=101  Identities=13%  Similarity=0.122  Sum_probs=0.0

Q ss_pred             CCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHCCC
Q ss_conf             9079997-588678999999986299728999965300786006677479989999-----3898378999999861258
Q gi|254780294|r    1 MYKIFID-GEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL-----CLPDVASLEIIQLIKKNGI   74 (311)
Q Consensus         1 M~kVaIv-GATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~-----a~p~~~s~~~~~~~~~~g~   74 (311)
                      |.||++| ||++=.|.++-+.|.+.-+.=+..--+.+...++..+..-..-+-+++     +-+.++..-+.....+.|.
T Consensus         1 M~KvalITGas~GIG~a~a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~v~~~~~~~g~   80 (245)
T PRK12824          1 MKKIALVTGAKRGIGSAIARELLADGYRVIATYFGNYDAAKDWFEEYGFTEDQVRLKSLDVTDTEECQEALARIEEEEGP   80 (245)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf             98599994788889999999999879989999588077899999987404993899991389999999999999997499


Q ss_pred             CEEEECCCCCHHHHHHHHHCCCCCCHHHHHHC
Q ss_conf             48982276303555431100210004776520
Q gi|254780294|r   75 NSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKI  106 (311)
Q Consensus        75 ~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~  106 (311)
                      --.+|.|++..+..+     +.|+..+..+..
T Consensus        81 iDiLVnnAG~~~~~~-----~~~~~~e~w~~~  107 (245)
T PRK12824         81 VDILVNNAGITRDSG-----FKRMSHQEWNDV  107 (245)
T ss_pred             CCEEEECCCCCCCCC-----CHHCCHHHHHHH
T ss_conf             989998988899999-----023999999999


No 498
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=36.35  E-value=29  Score=14.69  Aligned_cols=21  Identities=14%  Similarity=0.195  Sum_probs=0.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHC
Q ss_conf             799975886789999999862
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQ   23 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~   23 (311)
                      +|||||.||-.=..|+++|..
T Consensus       363 ~vaiVG~SGsGKSTL~~LL~g  383 (585)
T PRK13657        363 TVAIVGPTGAGKSTLINLLHR  383 (585)
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899988989869999999860


No 499
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=36.29  E-value=29  Score=14.69  Aligned_cols=84  Identities=14%  Similarity=0.021  Sum_probs=0.0

Q ss_pred             CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC----HHHHCCCCEEEECCCCHHHHHHHHHHHHCC
Q ss_conf             907999758867899999998629---9728999965300786006----677479989999389837899999986125
Q gi|254780294|r    1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR----EDLLNAADVSILCLPDVASLEIIQLIKKNG   73 (311)
Q Consensus         1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g   73 (311)
                      ..||+++....--|+..++.+.+.   --+++..-..-......++    ...-.+.|++|+......+..++..+++.|
T Consensus       140 ~kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~~~~~~~~~kqa~~~G  219 (351)
T cd06334         140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVG  219 (351)
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC
T ss_conf             87899995686276899999999999769979888806999835899999999769899999377378999999999759


Q ss_pred             CCEEEECCCCC
Q ss_conf             84898227630
Q gi|254780294|r   74 INSRIIDTSTA   84 (311)
Q Consensus        74 ~~~~vid~ss~   84 (311)
                      +...++-.+..
T Consensus       220 ~~~~~ig~~~~  230 (351)
T cd06334         220 LDDKFIGNWWS  230 (351)
T ss_pred             CCCCEEEEECC
T ss_conf             99857975167


No 500
>KOG2015 consensus
Probab=36.26  E-value=29  Score=14.68  Aligned_cols=64  Identities=17%  Similarity=0.113  Sum_probs=0.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCC---------------------------
Q ss_conf             7999758867899999998629972899---------------9965300786---------------------------
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNL---------------------------   40 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~---------------------------   40 (311)
                      ||-|+|| |=.|-|+++-|+-.-..+++               ++..++..|+                           
T Consensus        42 kiLviGA-GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIq  120 (422)
T KOG2015          42 KILVIGA-GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQ  120 (422)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHCCCEEEEEEECCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHH
T ss_conf             1899806-863279987677624551689850325314410232303311685368999999973488727744002120


Q ss_pred             CCCHHHHCCCCEEEECCCCHHHHHHHH
Q ss_conf             006677479989999389837899999
Q gi|254780294|r   41 RYREDLLNAADVSILCLPDVASLEIIQ   67 (311)
Q Consensus        41 ~~~~~~~~~~Divf~a~p~~~s~~~~~   67 (311)
                      .+..++.++.|+++..|++-.++.|..
T Consensus       121 d~~~~FYk~F~~iicGLDsIeaRRwIN  147 (422)
T KOG2015         121 DKPISFYKRFDLIICGLDSIEARRWIN  147 (422)
T ss_pred             CCCHHHHHHHCEEEECCCCHHHHHHHH
T ss_conf             189789864156775344406787899


Done!