Query gi|254780294|ref|YP_003064707.1| N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 311 No_of_seqs 123 out of 3406 Neff 8.6 Searched_HMMs 39220 Date Tue May 24 17:23:51 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780294.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 TIGR01850 argC N-acetyl-gamma- 100.0 0 0 601.5 24.0 294 2-310 1-348 (361) 2 PRK11863 N-acetyl-gamma-glutam 100.0 0 0 562.3 24.8 307 1-310 2-308 (314) 3 PRK00436 argC N-acetyl-gamma-g 100.0 0 0 554.3 26.1 291 1-310 1-332 (345) 4 COG0002 ArgC Acetylglutamate s 100.0 0 0 522.2 24.7 292 1-310 2-336 (349) 5 PRK06598 aspartate-semialdehyd 100.0 0 0 504.6 24.1 295 1-309 2-347 (348) 6 TIGR01296 asd_B aspartate-semi 100.0 0 0 512.5 15.3 292 3-308 1-348 (350) 7 PRK08664 aspartate-semialdehyd 100.0 0 0 495.0 25.6 288 1-309 3-345 (350) 8 PRK06728 aspartate-semialdehyd 100.0 0 0 480.6 22.7 292 2-309 6-343 (347) 9 PRK05671 aspartate-semialdehyd 100.0 0 0 472.6 24.6 290 2-309 5-333 (336) 10 PRK08040 putative semialdehyde 100.0 0 0 465.6 24.4 290 2-309 5-333 (337) 11 TIGR00978 asd_EA aspartate-sem 100.0 0 0 446.7 21.6 289 2-308 1-357 (358) 12 COG0136 Asd Aspartate-semialde 100.0 0 0 441.3 22.0 294 1-308 1-334 (334) 13 PRK06901 aspartate-semialdehyd 100.0 0 0 437.8 21.6 288 1-308 4-319 (323) 14 TIGR01851 argC_other N-acetyl- 100.0 0 0 433.4 12.9 307 2-310 2-314 (314) 15 KOG4354 consensus 100.0 0 0 389.9 17.0 286 2-310 20-327 (340) 16 KOG4777 consensus 100.0 0 0 318.8 15.4 298 2-305 4-358 (361) 17 pfam01118 Semialdhyde_dh Semia 100.0 1.4E-29 3.5E-34 202.4 8.8 101 3-105 1-120 (121) 18 smart00859 Semialdhyde_dh Semi 100.0 1.6E-29 4.1E-34 201.9 8.1 100 3-104 1-121 (122) 19 pfam02774 Semialdhyde_dhC Semi 99.9 1.3E-24 3.3E-29 171.6 11.4 153 126-294 1-167 (167) 20 TIGR01745 asd_gamma aspartate- 99.8 1.8E-19 4.7E-24 139.7 5.7 295 2-305 1-364 (367) 21 PTZ00023 glyceraldehyde-3-phos 99.4 1.4E-10 3.6E-15 84.7 21.1 281 1-307 2-333 (337) 22 COG0057 GapA Glyceraldehyde-3- 99.4 7.5E-10 1.9E-14 80.2 20.2 275 1-303 1-326 (335) 23 PRK07403 glyceraldehyde-3-phos 99.3 1.5E-09 3.8E-14 78.4 20.5 283 1-307 1-332 (337) 24 PRK08955 glyceraldehyde-3-phos 99.3 1.1E-09 2.9E-14 79.1 19.6 282 1-306 2-329 (333) 25 PRK13535 erythrose 4-phosphate 99.2 2.6E-08 6.6E-13 70.7 19.8 281 2-307 2-332 (336) 26 PRK07729 glyceraldehyde-3-phos 99.2 3E-08 7.7E-13 70.3 19.8 282 1-307 2-330 (343) 27 PRK04207 glyceraldehyde-3-phos 99.1 1.8E-08 4.6E-13 71.6 15.9 213 1-238 2-245 (338) 28 PRK08289 glyceraldehyde-3-phos 98.9 1.3E-06 3.3E-11 60.2 19.8 276 10-310 137-473 (479) 29 TIGR01532 E4PD_g-proteo D-eryt 98.8 1.6E-07 4.1E-12 65.8 12.1 270 3-296 1-328 (334) 30 PRK08300 acetaldehyde dehydrog 98.7 1.5E-07 3.9E-12 65.9 10.1 119 2-127 5-142 (298) 31 TIGR03215 ac_ald_DH_ac acetald 98.6 1.3E-06 3.3E-11 60.1 11.2 119 2-127 2-136 (285) 32 TIGR01534 GAPDH-I glyceraldehy 98.4 5.1E-06 1.3E-10 56.5 11.1 190 48-252 107-313 (366) 33 PRK13303 L-aspartate dehydroge 98.1 2.5E-05 6.3E-10 52.2 9.2 82 1-83 1-95 (265) 34 COG1748 LYS9 Saccharopine dehy 98.1 0.00014 3.5E-09 47.6 12.1 107 1-121 1-127 (389) 35 PTZ00325 malate dehydrogenase; 98.1 4.9E-05 1.3E-09 50.4 9.5 40 1-40 1-41 (313) 36 pfam03435 Saccharop_dh Sacchar 98.0 4.3E-05 1.1E-09 50.7 8.9 106 4-123 1-128 (384) 37 PRK13304 L-aspartate dehydroge 98.0 4.3E-05 1.1E-09 50.7 8.6 82 1-83 1-95 (265) 38 COG4569 MhpF Acetaldehyde dehy 98.0 4.2E-05 1.1E-09 50.8 7.9 121 2-129 5-145 (310) 39 KOG4039 consensus 98.0 6.8E-05 1.7E-09 49.5 8.9 78 1-78 18-127 (238) 40 PRK00048 dihydrodipicolinate r 97.8 0.00024 6.1E-09 46.1 9.7 109 1-120 2-129 (265) 41 pfam05368 NmrA NmrA-like famil 97.8 0.00038 9.6E-09 44.9 10.4 74 4-78 1-99 (232) 42 CHL00194 ycf39 Ycf39; Provisio 97.8 0.0003 7.7E-09 45.5 9.2 116 2-120 1-149 (319) 43 PRK08655 prephenate dehydrogen 97.7 0.00028 7.1E-09 45.7 8.3 114 2-117 1-137 (441) 44 PRK05447 1-deoxy-D-xylulose 5- 97.6 0.00024 6.2E-09 46.1 7.2 39 1-39 1-40 (379) 45 PRK13302 putative L-aspartate 97.6 0.00089 2.3E-08 42.6 10.0 81 2-83 7-101 (271) 46 PRK08507 prephenate dehydrogen 97.6 0.00054 1.4E-08 43.9 8.6 84 2-86 1-95 (275) 47 TIGR01921 DAP-DH diaminopimela 97.6 9E-05 2.3E-09 48.8 4.5 114 1-124 1-134 (326) 48 pfam01113 DapB_N Dihydrodipico 97.6 0.00087 2.2E-08 42.7 9.4 80 2-82 1-97 (122) 49 PRK11579 putative oxidoreducta 97.5 0.001 2.6E-08 42.3 8.9 78 2-81 5-95 (346) 50 PRK13301 putative L-aspartate 97.5 0.0012 3.2E-08 41.7 9.1 82 1-83 2-96 (267) 51 cd01337 MDH_glyoxysomal_mitoch 97.5 0.0017 4.3E-08 40.9 9.4 40 2-41 1-41 (310) 52 COG0289 DapB Dihydrodipicolina 97.4 0.0016 4E-08 41.1 9.2 106 1-118 2-127 (266) 53 COG1712 Predicted dinucleotide 97.4 0.001 2.6E-08 42.2 7.9 118 2-129 1-131 (255) 54 PRK05086 malate dehydrogenase; 97.4 0.0022 5.5E-08 40.2 9.4 39 2-40 1-42 (312) 55 cd05294 LDH-like_MDH_nadp A la 97.3 0.0031 7.8E-08 39.3 9.7 58 2-59 1-82 (309) 56 pfam03446 NAD_binding_2 NAD bi 97.3 0.0006 1.5E-08 43.6 6.0 80 1-84 1-97 (163) 57 PRK11880 pyrroline-5-carboxyla 97.3 0.0018 4.5E-08 40.8 8.2 151 1-156 2-176 (267) 58 PRK00094 gpsA NAD(P)H-dependen 97.3 0.0016 4E-08 41.1 7.8 112 1-116 1-137 (325) 59 PRK07502 cyclohexadienyl dehyd 97.3 0.0015 3.7E-08 41.3 7.2 85 1-86 6-104 (307) 60 PRK10206 putative dehydrogenas 97.2 0.0031 7.9E-08 39.3 8.8 82 1-84 2-99 (345) 61 pfam00056 Ldh_1_N lactate/mala 97.2 0.0041 1E-07 38.5 9.4 58 2-59 1-79 (142) 62 pfam00044 Gp_dh_N Glyceraldehy 97.2 0.0024 6E-08 40.0 8.0 110 2-117 1-150 (150) 63 COG0673 MviM Predicted dehydro 97.2 0.0045 1.1E-07 38.3 9.3 134 1-142 3-152 (342) 64 PRK06545 prephenate dehydrogen 97.2 0.0019 5E-08 40.5 7.1 84 2-86 1-97 (357) 65 pfam01408 GFO_IDH_MocA Oxidore 97.1 0.0027 6.8E-08 39.6 7.7 77 2-80 1-92 (120) 66 PTZ00117 malate dehydrogenase; 97.1 0.0051 1.3E-07 37.9 9.1 58 1-59 1-79 (313) 67 smart00846 Gp_dh_N Glyceraldeh 97.1 0.0063 1.6E-07 37.3 9.0 109 2-117 1-149 (149) 68 PRK07417 arogenate dehydrogena 97.1 0.0043 1.1E-07 38.3 8.0 83 2-86 2-96 (280) 69 PRK11199 tyrA bifunctional cho 97.1 0.0052 1.3E-07 37.9 8.4 115 2-121 99-222 (374) 70 PRK06928 pyrroline-5-carboxyla 97.0 0.0018 4.5E-08 40.7 5.8 152 1-156 1-176 (275) 71 COG2085 Predicted dinucleotide 97.0 0.0044 1.1E-07 38.3 7.7 95 1-97 1-110 (211) 72 COG0287 TyrA Prephenate dehydr 97.0 0.0035 8.8E-08 39.0 7.2 85 1-86 3-102 (279) 73 pfam02629 CoA_binding CoA bind 97.0 0.0063 1.6E-07 37.4 8.2 76 2-78 4-91 (96) 74 pfam02670 DXP_reductoisom 1-de 97.0 0.003 7.7E-08 39.3 6.5 52 4-55 1-53 (129) 75 TIGR03466 HpnA hopanoid-associ 97.0 0.0071 1.8E-07 37.0 8.3 56 2-58 1-73 (328) 76 cd00704 MDH Malate dehydrogena 96.9 0.0031 7.9E-08 39.3 6.1 57 2-58 1-85 (323) 77 TIGR03649 ergot_EASG ergot alk 96.9 0.011 2.7E-07 36.0 8.8 78 4-83 2-105 (285) 78 COG0345 ProC Pyrroline-5-carbo 96.9 0.0046 1.2E-07 38.2 6.8 154 1-157 1-176 (266) 79 pfam01210 NAD_Gly3P_dh_N NAD-d 96.9 0.01 2.6E-07 36.0 8.5 94 2-99 1-119 (159) 80 cd01338 MDH_choloroplast_like 96.9 0.0047 1.2E-07 38.1 6.8 56 2-57 3-86 (322) 81 PRK11908 NAD-dependent epimera 96.8 0.0041 1.1E-07 38.5 6.2 34 1-34 1-34 (347) 82 COG2910 Putative NADH-flavin r 96.8 0.0089 2.3E-07 36.4 7.8 100 2-102 1-127 (211) 83 pfam01488 Shikimate_DH Shikima 96.8 0.0032 8.2E-08 39.2 5.4 87 2-92 13-118 (134) 84 COG2344 AT-rich DNA-binding pr 96.8 0.0067 1.7E-07 37.2 6.9 74 1-75 84-172 (211) 85 PRK06153 hypothetical protein; 96.7 0.0022 5.5E-08 40.2 4.3 10 50-59 100-109 (393) 86 pfam03807 F420_oxidored NADP o 96.7 0.0044 1.1E-07 38.3 5.9 78 3-82 1-91 (93) 87 cd05291 HicDH_like L-2-hydroxy 96.7 0.021 5.4E-07 34.1 9.3 56 2-58 1-77 (306) 88 cd05292 LDH_2 A subgroup of L- 96.7 0.025 6.4E-07 33.6 9.6 56 2-58 1-76 (308) 89 cd00650 LDH_MDH_like NAD-depen 96.7 0.017 4.5E-07 34.6 8.6 56 4-59 1-80 (263) 90 PRK07679 pyrroline-5-carboxyla 96.6 0.014 3.7E-07 35.1 8.0 152 1-156 3-180 (279) 91 cd05213 NAD_bind_Glutamyl_tRNA 96.6 0.0089 2.3E-07 36.4 6.7 11 16-26 28-38 (311) 92 cd01336 MDH_cytoplasmic_cytoso 96.6 0.0091 2.3E-07 36.3 6.7 57 2-58 3-87 (325) 93 COG1091 RfbD dTDP-4-dehydrorha 96.5 0.011 2.7E-07 35.9 6.8 85 1-90 1-107 (281) 94 PRK07634 pyrroline-5-carboxyla 96.5 0.016 4E-07 34.9 7.5 150 2-156 5-180 (245) 95 COG0136 Asd Aspartate-semialde 96.5 0.002 5E-08 40.5 2.8 31 206-236 227-257 (334) 96 PRK05472 redox-sensing transcr 96.5 0.019 4.9E-07 34.4 7.8 84 1-87 84-182 (211) 97 KOG1502 consensus 96.5 0.014 3.7E-07 35.1 7.0 57 1-57 6-86 (327) 98 PTZ00082 L-lactate dehydrogena 96.4 0.03 7.6E-07 33.2 8.6 55 3-58 9-84 (322) 99 PRK05442 malate dehydrogenase; 96.4 0.012 3.1E-07 35.6 6.4 57 2-58 5-89 (325) 100 PRK08818 prephenate dehydrogen 96.4 0.02 5.1E-07 34.2 7.5 80 3-86 6-92 (373) 101 PRK06223 malate dehydrogenase; 96.4 0.044 1.1E-06 32.1 9.2 34 2-36 1-35 (312) 102 COG0039 Mdh Malate/lactate deh 96.4 0.057 1.5E-06 31.4 9.6 56 2-58 1-78 (313) 103 COG1004 Ugd Predicted UDP-gluc 96.3 0.028 7E-07 33.4 7.7 57 2-60 1-87 (414) 104 PRK10217 dTDP-glucose 4,6-dehy 96.3 0.015 3.7E-07 35.1 6.2 34 1-34 1-34 (355) 105 cd05293 LDH_1 A subgroup of L- 96.3 0.074 1.9E-06 30.7 9.7 34 2-36 4-38 (312) 106 cd01484 E1-2_like Ubiquitin ac 96.2 0.026 6.7E-07 33.5 7.3 96 3-101 1-141 (234) 107 TIGR01214 rmlD dTDP-4-dehydror 96.2 0.0073 1.9E-07 37.0 4.1 83 3-89 1-116 (317) 108 PRK08229 2-dehydropantoate 2-r 96.1 0.037 9.3E-07 32.6 7.6 66 1-68 2-92 (341) 109 cd01339 LDH-like_MDH L-lactate 96.1 0.063 1.6E-06 31.1 8.8 55 4-59 1-76 (300) 110 COG1042 Acyl-CoA synthetase (N 96.1 0.055 1.4E-06 31.5 8.4 112 3-118 12-132 (598) 111 PRK00066 ldh L-lactate dehydro 96.0 0.099 2.5E-06 29.9 9.5 56 2-58 7-82 (315) 112 COG0240 GpsA Glycerol-3-phosph 96.0 0.042 1.1E-06 32.2 7.4 81 1-85 1-108 (329) 113 PRK00045 hemA glutamyl-tRNA re 96.0 0.037 9.4E-07 32.6 7.1 90 2-92 183-290 (429) 114 cd01489 Uba2_SUMO Ubiquitin ac 95.9 0.024 6.1E-07 33.8 5.9 112 3-118 1-156 (312) 115 PRK08374 homoserine dehydrogen 95.9 0.063 1.6E-06 31.1 8.1 80 2-84 3-117 (316) 116 pfam01073 3Beta_HSD 3-beta hyd 95.9 0.055 1.4E-06 31.5 7.7 30 6-35 2-32 (280) 117 PRK11559 garR tartronate semia 95.9 0.027 6.9E-07 33.4 6.0 79 2-84 2-97 (295) 118 TIGR01546 GAPDH-II_archae glyc 95.8 0.13 3.2E-06 29.3 9.3 170 38-238 61-242 (335) 119 cd00300 LDH_like L-lactate deh 95.8 0.076 1.9E-06 30.6 8.2 55 4-59 1-76 (300) 120 cd01490 Ube1_repeat2 Ubiquitin 95.8 0.029 7.4E-07 33.2 6.0 95 3-100 1-147 (435) 121 PRK06270 homoserine dehydrogen 95.8 0.051 1.3E-06 31.7 7.3 79 2-83 3-126 (342) 122 cd05290 LDH_3 A subgroup of L- 95.8 0.094 2.4E-06 30.1 8.6 55 3-58 1-77 (307) 123 pfam03447 NAD_binding_3 Homose 95.8 0.066 1.7E-06 31.0 7.6 70 11-82 3-89 (116) 124 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.06 1.5E-06 31.3 7.2 79 2-83 29-130 (194) 125 pfam01370 Epimerase NAD depend 95.7 0.14 3.5E-06 29.1 8.9 31 4-35 1-31 (235) 126 PRK05808 3-hydroxybutyryl-CoA 95.6 0.095 2.4E-06 30.0 8.0 87 1-89 3-125 (282) 127 COG3268 Uncharacterized conser 95.6 0.15 3.8E-06 28.8 8.8 142 3-153 8-177 (382) 128 PRK12367 short chain dehydroge 95.5 0.063 1.6E-06 31.1 6.8 56 2-58 18-91 (250) 129 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.13 3.4E-06 29.1 8.4 86 1-88 2-124 (308) 130 TIGR03376 glycerol3P_DH glycer 95.5 0.12 3E-06 29.5 8.0 97 3-100 1-134 (342) 131 PRK09987 dTDP-4-dehydrorhamnos 95.4 0.12 3.2E-06 29.3 8.0 86 2-89 1-110 (299) 132 PRK12491 pyrroline-5-carboxyla 95.4 0.038 9.7E-07 32.5 5.3 152 2-157 3-179 (272) 133 PRK06349 homoserine dehydrogen 95.4 0.16 4E-06 28.7 8.4 80 2-84 4-106 (432) 134 PRK07531 bifunctional 3-hydrox 95.2 0.18 4.7E-06 28.3 8.4 86 1-88 2-120 (489) 135 pfam00899 ThiF ThiF family. Th 95.2 0.2 5.1E-06 28.0 8.4 78 2-82 2-123 (134) 136 PRK12464 1-deoxy-D-xylulose 5- 95.2 0.081 2.1E-06 30.5 6.4 34 6-39 1-35 (392) 137 COG0743 Dxr 1-deoxy-D-xylulose 95.2 0.038 9.8E-07 32.5 4.7 37 1-37 1-38 (385) 138 PRK04663 murD UDP-N-acetylmura 95.2 0.1 2.6E-06 29.8 6.9 74 1-75 7-94 (438) 139 COG0702 Predicted nucleoside-d 95.1 0.069 1.7E-06 30.9 5.9 56 2-58 1-72 (275) 140 COG5322 Predicted dehydrogenas 95.1 0.034 8.8E-07 32.8 4.2 86 3-91 169-270 (351) 141 cd01483 E1_enzyme_family Super 95.0 0.22 5.6E-06 27.8 8.2 78 3-83 1-122 (143) 142 PRK07066 3-hydroxybutyryl-CoA 95.0 0.2 5.2E-06 28.0 8.0 86 1-88 7-125 (321) 143 TIGR01777 yfcH conserved hypot 94.9 0.029 7.3E-07 33.3 3.5 132 4-162 1-140 (307) 144 pfam04321 RmlD_sub_bind RmlD s 94.8 0.25 6.4E-06 27.4 8.1 53 4-57 1-57 (284) 145 cd00757 ThiF_MoeB_HesA_family 94.8 0.3 7.7E-06 27.0 8.7 92 2-97 22-157 (228) 146 PRK09260 3-hydroxybutyryl-CoA 94.8 0.16 4.1E-06 28.6 7.0 118 1-122 2-164 (289) 147 cd01488 Uba3_RUB Ubiquitin act 94.8 0.17 4.5E-06 28.4 7.2 66 3-69 1-108 (291) 148 PRK09117 consensus 94.8 0.29 7.5E-06 27.0 8.3 118 1-122 2-163 (282) 149 pfam10727 Rossmann-like Rossma 94.7 0.1 2.6E-06 29.9 5.8 79 5-87 1-93 (111) 150 PRK12439 NAD(P)H-dependent gly 94.7 0.25 6.3E-06 27.5 7.8 82 1-84 6-112 (340) 151 KOG1430 consensus 94.7 0.059 1.5E-06 31.3 4.6 37 1-37 4-41 (361) 152 COG0451 WcaG Nucleoside-diphos 94.7 0.33 8.4E-06 26.7 9.6 35 3-38 2-36 (314) 153 PRK00683 murD UDP-N-acetylmura 94.6 0.11 2.8E-06 29.7 5.8 73 1-75 3-85 (418) 154 KOG1203 consensus 94.6 0.052 1.3E-06 31.7 4.2 37 1-38 79-115 (411) 155 PRK07530 3-hydroxybutyryl-CoA 94.6 0.29 7.4E-06 27.0 7.9 87 1-89 4-126 (292) 156 PRK08293 3-hydroxybutyryl-CoA 94.6 0.35 8.8E-06 26.6 8.4 87 1-89 3-127 (288) 157 cd05212 NAD_bind_m-THF_DH_Cycl 94.5 0.13 3.4E-06 29.1 6.1 75 2-85 29-103 (140) 158 COG0460 ThrA Homoserine dehydr 94.5 0.28 7E-06 27.2 7.7 80 1-82 3-114 (333) 159 TIGR03026 NDP-sugDHase nucleot 94.5 0.088 2.3E-06 30.2 5.2 58 2-61 1-88 (411) 160 cd06533 Glyco_transf_WecG_TagA 94.5 0.36 9.1E-06 26.5 8.3 97 2-98 47-148 (171) 161 pfam03808 Glyco_tran_WecB Glyc 94.4 0.26 6.6E-06 27.4 7.4 97 2-98 49-150 (172) 162 TIGR00978 asd_EA aspartate-sem 94.4 0.052 1.3E-06 31.6 3.9 94 162-255 180-286 (358) 163 COG0373 HemA Glutamyl-tRNA red 94.4 0.21 5.3E-06 27.9 6.9 89 2-91 179-283 (414) 164 PRK07660 consensus 94.4 0.33 8.4E-06 26.7 7.8 87 1-89 3-125 (283) 165 TIGR00243 Dxr 1-deoxy-D-xylulo 94.4 0.059 1.5E-06 31.3 4.0 34 1-34 2-37 (406) 166 PRK06035 3-hydroxyacyl-CoA deh 94.3 0.37 9.4E-06 26.4 8.0 87 1-89 3-128 (291) 167 TIGR00036 dapB dihydrodipicoli 94.3 0.4 1E-05 26.2 8.8 124 1-135 1-151 (281) 168 PRK06476 pyrroline-5-carboxyla 94.2 0.18 4.5E-06 28.4 6.2 81 2-84 1-95 (255) 169 PRK07424 bifunctional sterol d 94.2 0.2 5.1E-06 28.0 6.5 35 2-37 181-215 (410) 170 pfam03721 UDPG_MGDP_dh_N UDP-g 94.2 0.12 2.9E-06 29.5 5.2 58 2-61 1-87 (185) 171 PRK06813 homoserine dehydrogen 94.2 0.25 6.4E-06 27.4 6.9 78 2-82 3-122 (341) 172 TIGR03589 PseB UDP-N-acetylglu 94.1 0.43 1.1E-05 26.0 8.4 92 2-94 5-136 (324) 173 PRK06130 3-hydroxybutyryl-CoA 94.1 0.39 1E-05 26.2 7.8 86 1-88 5-120 (310) 174 PRK07819 3-hydroxybutyryl-CoA 94.1 0.44 1.1E-05 25.9 8.4 86 1-88 2-124 (284) 175 pfam02737 3HCDH_N 3-hydroxyacy 94.0 0.4 1E-05 26.2 7.7 84 3-88 1-120 (180) 176 PRK02006 murD UDP-N-acetylmura 94.0 0.45 1.2E-05 25.8 8.1 85 1-89 7-112 (501) 177 PRK11064 wecC UDP-N-acetyl-D-m 94.0 0.084 2.2E-06 30.4 4.2 58 1-60 3-86 (415) 178 COG2084 MmsB 3-hydroxyisobutyr 93.9 0.44 1.1E-05 26.0 7.7 80 2-85 1-98 (286) 179 COG0569 TrkA K+ transport syst 93.9 0.45 1.1E-05 25.9 7.7 145 2-158 1-168 (225) 180 PRK06718 precorrin-2 dehydroge 93.8 0.5 1.3E-05 25.6 8.5 70 2-73 11-94 (202) 181 PRK07680 late competence prote 93.7 0.22 5.5E-06 27.9 5.9 84 2-86 1-100 (273) 182 PRK08125 bifunctional UDP-gluc 93.7 0.39 9.9E-06 26.3 7.1 89 2-90 316-441 (660) 183 PRK06444 prephenate dehydrogen 93.6 0.27 7E-06 27.2 6.2 61 2-84 1-61 (197) 184 pfam02826 2-Hacid_dh_C D-isome 93.6 0.22 5.6E-06 27.8 5.7 59 2-62 37-102 (176) 185 pfam02882 THF_DHG_CYH_C Tetrah 93.5 0.29 7.5E-06 27.0 6.3 103 2-117 37-139 (159) 186 KOG1494 consensus 93.5 0.16 4.1E-06 28.7 4.9 36 1-36 28-64 (345) 187 COG1090 Predicted nucleoside-d 93.5 0.16 4E-06 28.7 4.9 60 4-64 1-71 (297) 188 PRK09897 hypothetical protein; 93.5 0.13 3.4E-06 29.2 4.4 42 1-43 1-45 (535) 189 PRK06522 2-dehydropantoate 2-r 93.4 0.36 9.1E-06 26.5 6.6 68 2-71 1-90 (307) 190 PRK09496 trkA potassium transp 93.4 0.41 1E-05 26.1 6.8 69 2-72 1-88 (455) 191 PRK05562 precorrin-2 dehydroge 93.3 0.6 1.5E-05 25.1 8.8 78 2-81 25-117 (222) 192 PRK06249 2-dehydropantoate 2-r 93.3 0.6 1.5E-05 25.1 8.7 64 2-67 6-90 (313) 193 PRK06392 homoserine dehydrogen 93.2 0.63 1.6E-05 25.0 7.6 79 2-83 1-117 (326) 194 TIGR02964 xanthine_xdhC xanthi 93.1 0.16 4.1E-06 28.7 4.4 34 3-37 117-150 (270) 195 KOG2741 consensus 93.0 0.66 1.7E-05 24.8 7.7 73 2-75 7-98 (351) 196 KOG1198 consensus 93.0 0.52 1.3E-05 25.5 6.9 72 3-74 160-250 (347) 197 PRK06719 precorrin-2 dehydroge 93.0 0.67 1.7E-05 24.8 9.5 78 2-81 14-102 (157) 198 KOG2711 consensus 93.0 0.54 1.4E-05 25.4 6.9 90 2-92 22-149 (372) 199 PRK12416 protoporphyrinogen ox 92.9 0.35 8.9E-06 26.5 5.9 77 1-80 1-85 (466) 200 pfam00070 Pyr_redox Pyridine n 92.6 0.55 1.4E-05 25.3 6.6 63 3-84 1-63 (82) 201 PRK10084 dTDP-glucose 4,6 dehy 92.4 0.81 2.1E-05 24.3 7.2 33 3-35 2-34 (352) 202 PRK06487 glycerate dehydrogena 92.3 0.47 1.2E-05 25.8 5.8 25 45-70 41-65 (317) 203 PRK03369 murD UDP-N-acetylmura 92.2 0.61 1.6E-05 25.1 6.4 85 2-90 13-110 (487) 204 COG0771 MurD UDP-N-acetylmuram 92.1 0.86 2.2E-05 24.1 8.8 89 1-92 7-111 (448) 205 PRK11728 hypothetical protein; 92.1 0.88 2.2E-05 24.1 7.8 90 1-91 2-132 (400) 206 cd01080 NAD_bind_m-THF_DH_Cycl 91.9 0.92 2.3E-05 23.9 7.7 106 2-117 45-150 (168) 207 PRK01710 murD UDP-N-acetylmura 91.8 0.92 2.3E-05 24.0 6.9 72 2-75 15-103 (458) 208 TIGR02717 AcCoA-syn-alpha acet 91.8 0.53 1.3E-05 25.4 5.7 84 2-86 8-103 (457) 209 TIGR01915 npdG NADPH-dependent 91.7 0.76 1.9E-05 24.4 6.4 86 2-87 1-116 (233) 210 PRK10124 putative UDP-glucose 91.7 0.98 2.5E-05 23.8 9.4 84 2-86 145-244 (464) 211 COG3804 Uncharacterized conser 91.5 1 2.6E-05 23.7 6.9 77 5-84 5-100 (350) 212 KOG2013 consensus 91.4 0.11 2.7E-06 29.8 1.7 68 2-70 13-124 (603) 213 PRK01368 murD UDP-N-acetylmura 91.3 0.58 1.5E-05 25.2 5.5 83 2-89 7-102 (450) 214 PRK12921 2-dehydropantoate 2-r 91.3 1.1 2.7E-05 23.6 8.6 68 2-71 1-90 (306) 215 PRK00141 murD UDP-N-acetylmura 91.3 1 2.7E-05 23.6 6.7 83 3-89 19-115 (476) 216 PRK10675 UDP-galactose-4-epime 91.2 1.1 2.8E-05 23.5 8.3 31 2-33 1-31 (338) 217 COG0111 SerA Phosphoglycerate 91.2 0.91 2.3E-05 24.0 6.3 26 44-70 40-65 (324) 218 COG1648 CysG Siroheme synthase 91.1 1.1 2.8E-05 23.4 8.9 80 2-83 13-107 (210) 219 cd04510 consensus 90.9 0.77 2E-05 24.4 5.7 56 2-57 2-85 (334) 220 PRK09599 6-phosphogluconate de 90.8 0.86 2.2E-05 24.1 5.9 80 2-85 1-97 (301) 221 KOG2666 consensus 90.7 0.34 8.8E-06 26.6 3.8 56 1-57 1-86 (481) 222 PRK10430 DNA-binding transcrip 90.7 1.2 3.1E-05 23.2 6.7 84 1-84 1-86 (239) 223 TIGR01746 Thioester-redct thio 90.5 0.35 8.9E-06 26.6 3.7 30 3-32 1-33 (405) 224 PRK08666 5'-methylthioadenosin 90.4 0.27 6.9E-06 27.2 3.1 84 1-92 1-93 (261) 225 PRK12490 6-phosphogluconate de 90.4 1.3 3.3E-05 23.0 6.7 141 2-154 1-168 (298) 226 PRK08328 hypothetical protein; 90.4 1.3 3.3E-05 23.0 8.7 96 2-101 28-168 (230) 227 PRK06436 glycerate dehydrogena 90.3 1.1 2.9E-05 23.4 6.2 18 290-307 262-279 (303) 228 TIGR01759 MalateDH-SF1 malate 90.3 1 2.6E-05 23.6 5.9 107 2-125 4-140 (329) 229 PRK03806 murD UDP-N-acetylmura 90.3 1.3 3.4E-05 23.0 7.2 72 2-75 7-91 (438) 230 PRK13984 putative oxidoreducta 90.0 1.1 2.9E-05 23.4 5.9 61 2-64 284-383 (604) 231 PRK08410 2-hydroxyacid dehydro 89.8 1.2 2.9E-05 23.3 5.9 62 2-70 1-62 (311) 232 PRK05708 2-dehydropantoate 2-r 89.6 1.5 3.8E-05 22.6 6.9 78 2-81 3-103 (305) 233 PRK03673 competence damage-ind 89.5 1 2.6E-05 23.7 5.4 113 1-120 1-136 (396) 234 COG1893 ApbA Ketopantoate redu 89.4 1.6 4E-05 22.5 7.2 69 2-72 1-90 (307) 235 pfam02558 ApbA Ketopantoate re 89.2 1.6 4E-05 22.5 8.2 65 4-70 1-87 (150) 236 TIGR01381 E1_like_apg7 E1-like 89.2 1.6 4.1E-05 22.5 7.0 128 2-132 349-572 (689) 237 PRK06029 3-octaprenyl-4-hydrox 89.1 0.55 1.4E-05 25.3 3.8 37 1-37 1-40 (187) 238 PRK08306 dipicolinate synthase 88.9 1.6 4E-05 22.5 6.0 56 2-59 3-65 (296) 239 PRK13243 glyoxylate reductase; 88.7 1.2 3.1E-05 23.2 5.3 72 3-83 4-75 (333) 240 PRK12809 putative oxidoreducta 88.7 1.4 3.6E-05 22.8 5.7 61 2-64 311-410 (639) 241 PRK07201 short chain dehydroge 88.6 0.81 2.1E-05 24.3 4.4 35 3-37 2-36 (663) 242 PRK08268 3-hydroxybutyryl-CoA 88.5 1.8 4.6E-05 22.2 8.2 86 1-88 3-124 (503) 243 PRK10637 cysG siroheme synthas 88.5 1.8 4.6E-05 22.2 8.8 78 2-81 13-105 (457) 244 PRK12769 putative oxidoreducta 88.4 1.6 4.2E-05 22.4 5.8 37 2-40 328-364 (654) 245 PRK00257 erythronate-4-phospha 88.2 1.6 4.2E-05 22.4 5.7 27 39-65 27-53 (379) 246 pfam02423 OCD_Mu_crystall Orni 88.1 1.3 3.3E-05 23.1 5.1 14 294-307 292-305 (312) 247 PRK12480 D-lactate dehydrogena 87.4 2.1 5.3E-05 21.8 6.3 78 1-84 1-78 (330) 248 cd05295 MDH_like Malate dehydr 87.2 1.7 4.2E-05 22.4 5.3 64 2-65 124-217 (452) 249 PRK06847 hypothetical protein; 87.1 1.2 2.9E-05 23.3 4.4 32 1-34 4-35 (375) 250 COG4529 Uncharacterized protei 86.9 1.3 3.3E-05 23.1 4.6 43 1-44 1-47 (474) 251 COG2423 Predicted ornithine cy 86.8 1.4 3.7E-05 22.7 4.8 15 294-308 301-315 (330) 252 cd01487 E1_ThiF_like E1_ThiF_l 86.7 2.3 5.8E-05 21.5 8.2 82 3-88 1-126 (174) 253 PRK11697 putative two-componen 86.5 2.3 6E-05 21.4 7.6 84 1-86 1-87 (239) 254 PRK07688 thiamine/molybdopteri 86.3 2.4 6.1E-05 21.4 6.1 124 2-129 25-193 (339) 255 PRK12810 gltD glutamate syntha 86.2 2.4 6.1E-05 21.4 5.9 37 2-40 144-180 (472) 256 PRK00258 aroE shikimate 5-dehy 86.2 1.9 4.8E-05 22.0 5.1 16 146-161 127-142 (275) 257 PRK01438 murD UDP-N-acetylmura 86.2 2.4 6.2E-05 21.4 8.7 82 2-87 15-114 (481) 258 PRK12814 putative NADPH-depend 86.1 2.1 5.3E-05 21.8 5.3 61 2-64 194-293 (652) 259 cd01065 NAD_bind_Shikimate_DH 86.0 1.8 4.7E-05 22.1 5.0 59 2-61 20-93 (155) 260 pfam07993 NAD_binding_4 Male s 86.0 0.99 2.5E-05 23.7 3.6 30 6-35 1-31 (245) 261 PRK13508 tagatose-6-phosphate 85.7 2.6 6.6E-05 21.2 7.8 101 4-108 56-193 (309) 262 TIGR01772 MDH_euk_gproteo mala 85.6 2.5 6.3E-05 21.3 5.5 26 3-28 1-27 (379) 263 KOG1431 consensus 85.6 1.5 3.7E-05 22.7 4.3 35 1-35 1-37 (315) 264 pfam10100 DUF2338 Uncharacteri 85.5 2.6 6.7E-05 21.1 8.8 128 1-136 1-195 (429) 265 PRK11883 protoporphyrinogen ox 85.4 2.6 6.7E-05 21.1 6.7 80 2-84 1-84 (452) 266 PRK13512 coenzyme A disulfide 85.3 1.5 3.9E-05 22.6 4.3 36 1-37 1-37 (438) 267 PRK10792 bifunctional 5,10-met 85.3 2.3 5.8E-05 21.5 5.2 17 48-64 61-77 (288) 268 PRK06932 glycerate dehydrogena 85.2 2.7 6.9E-05 21.1 5.9 73 1-83 1-73 (314) 269 KOG2733 consensus 85.2 1.5 3.8E-05 22.7 4.2 123 2-133 6-162 (423) 270 pfam07075 DUF1343 Protein of u 84.9 2.8 7.1E-05 21.0 6.1 71 14-84 14-122 (359) 271 TIGR03219 salicylate_mono sali 84.8 1.5 3.8E-05 22.6 4.1 32 2-34 1-32 (414) 272 pfam00743 FMO-like Flavin-bind 84.8 1.8 4.5E-05 22.2 4.4 37 2-40 2-38 (532) 273 PRK05597 molybdopterin biosynt 84.7 2.9 7.3E-05 20.9 7.9 118 2-122 29-190 (355) 274 COG1232 HemY Protoporphyrinoge 84.7 1.8 4.5E-05 22.2 4.4 72 2-79 1-79 (444) 275 TIGR03385 CoA_CoA_reduc CoA-di 84.6 2.9 7.4E-05 20.9 6.6 56 2-74 138-194 (427) 276 PRK05920 aromatic acid decarbo 84.5 1.7 4.3E-05 22.3 4.2 36 1-37 4-42 (205) 277 KOG0029 consensus 84.3 2.1 5.3E-05 21.7 4.6 43 1-45 15-57 (501) 278 PRK04690 murD UDP-N-acetylmura 84.3 3 7.6E-05 20.8 7.6 76 2-80 9-98 (468) 279 TIGR01035 hemA glutamyl-tRNA r 84.1 2.2 5.6E-05 21.6 4.6 89 2-91 186-302 (436) 280 pfam02153 PDH Prephenate dehyd 84.1 1.8 4.5E-05 22.2 4.2 63 24-86 9-83 (258) 281 PRK11150 rfaD ADP-L-glycero-D- 83.9 3.1 7.9E-05 20.7 8.6 32 4-35 2-33 (308) 282 pfam02254 TrkA_N TrkA-N domain 83.9 3.1 7.9E-05 20.7 6.3 63 4-69 1-81 (115) 283 cd05297 GH4_alpha_glucosidase_ 83.3 2.9 7.3E-05 20.9 5.0 115 2-117 1-147 (423) 284 KOG0455 consensus 83.2 3.3 8.4E-05 20.5 7.9 34 3-37 5-46 (364) 285 PRK06617 2-octaprenyl-6-methox 82.9 2.8 7.3E-05 20.9 4.8 33 1-35 1-33 (374) 286 PRK12475 thiamine/molybdopteri 82.8 3.4 8.7E-05 20.4 7.4 123 2-129 25-192 (337) 287 cd01079 NAD_bind_m-THF_DH NAD 82.8 3.4 8.8E-05 20.4 5.4 77 2-85 63-159 (197) 288 PRK12771 putative glutamate sy 82.6 3.5 8.9E-05 20.4 5.8 37 2-40 138-174 (560) 289 PRK05690 molybdopterin biosynt 82.1 3.6 9.3E-05 20.3 8.3 70 2-72 33-145 (245) 290 KOG0657 consensus 81.8 0.7 1.8E-05 24.7 1.4 97 48-151 73-169 (285) 291 PRK08291 ornithine cyclodeamin 81.7 3.2 8.1E-05 20.6 4.7 13 294-306 302-314 (330) 292 COG0300 DltE Short-chain dehyd 81.7 3.8 9.6E-05 20.2 5.7 82 1-83 6-93 (265) 293 COG0190 FolD 5,10-methylene-te 81.3 3.9 9.9E-05 20.1 5.3 31 52-82 34-68 (283) 294 COG1252 Ndh NADH dehydrogenase 81.3 3.4 8.7E-05 20.4 4.8 36 1-37 3-39 (405) 295 PRK07574 formate dehydrogenase 81.3 3.9 9.9E-05 20.1 6.2 52 18-71 61-114 (385) 296 KOG2337 consensus 81.1 3.9 0.0001 20.0 7.0 129 2-132 341-563 (669) 297 PRK12409 D-amino acid dehydrog 81.0 3.3 8.5E-05 20.5 4.6 34 1-36 1-34 (410) 298 KOG0172 consensus 80.8 4 0.0001 20.0 5.6 71 1-72 2-91 (445) 299 PRK09754 phenylpropionate diox 80.4 4.2 0.00011 19.9 7.3 36 2-38 4-40 (400) 300 COG0163 UbiX 3-polyprenyl-4-hy 80.1 3.7 9.5E-05 20.2 4.6 33 4-37 7-40 (191) 301 cd05197 GH4_glycoside_hydrolas 79.6 4.4 0.00011 19.7 4.9 109 2-113 1-141 (425) 302 PRK04965 nitric oxide reductas 79.4 3.5 9.1E-05 20.3 4.3 36 1-37 1-38 (378) 303 PRK07102 short chain dehydroge 79.4 3.2 8.2E-05 20.6 4.1 45 1-46 1-45 (243) 304 PRK07340 ornithine cyclodeamin 79.1 3.9 9.9E-05 20.1 4.5 11 295-305 285-295 (304) 305 PRK06141 ornithine cyclodeamin 78.9 4.6 0.00012 19.6 4.8 15 294-308 294-308 (313) 306 PRK08118 topology modulation p 78.5 2 5.1E-05 21.9 2.8 33 1-33 1-36 (167) 307 TIGR00421 ubiX_pad polyprenyl 78.5 3.1 7.8E-05 20.7 3.8 36 1-37 1-37 (181) 308 PRK04308 murD UDP-N-acetylmura 78.2 4.9 0.00012 19.5 6.8 72 2-75 6-93 (445) 309 PRK08605 D-lactate dehydrogena 78.0 4.9 0.00013 19.4 5.2 77 1-83 1-77 (332) 310 KOG0685 consensus 77.9 3.8 9.6E-05 20.1 4.1 40 3-43 23-62 (498) 311 cd05298 GH4_GlvA_pagL_like Gly 77.7 5 0.00013 19.4 4.8 56 2-57 1-82 (437) 312 PRK11749 putative oxidoreducta 77.4 5.2 0.00013 19.3 5.5 38 2-41 141-178 (460) 313 PRK06912 acoL dihydrolipoamide 77.0 5.3 0.00013 19.3 5.1 21 3-24 2-22 (458) 314 PRK09483 response regulator; P 76.2 5.5 0.00014 19.1 4.8 81 1-83 1-83 (216) 315 PRK08643 acetoin reductase; Va 75.9 5.6 0.00014 19.1 8.0 85 1-86 1-91 (256) 316 PRK07208 hypothetical protein; 75.9 5.7 0.00014 19.1 4.6 39 2-42 4-42 (474) 317 PRK05653 fabG 3-ketoacyl-(acyl 75.4 5.8 0.00015 19.0 5.1 96 4-105 8-108 (246) 318 PRK05868 hypothetical protein; 75.4 5.1 0.00013 19.3 4.2 31 1-33 1-31 (372) 319 TIGR00232 tktlase_bact transke 75.0 5.9 0.00015 18.9 4.4 27 137-163 234-260 (675) 320 PRK09466 metL bifunctional asp 75.0 6 0.00015 18.9 7.4 31 2-33 459-496 (810) 321 COG3349 Uncharacterized conser 74.6 6.1 0.00016 18.9 4.5 39 2-42 1-39 (485) 322 PRK12778 putative bifunctional 74.4 6.2 0.00016 18.8 6.2 37 2-40 440-476 (760) 323 TIGR00065 ftsZ cell division p 74.4 6.2 0.00016 18.8 5.5 141 2-152 18-211 (365) 324 PRK06823 ornithine cyclodeamin 74.3 5.9 0.00015 19.0 4.3 14 294-307 296-309 (315) 325 cd01486 Apg7 Apg7 is an E1-lik 74.2 6.3 0.00016 18.8 6.7 80 3-84 1-142 (307) 326 TIGR03450 mycothiol_INO1 inosi 73.5 6.5 0.00017 18.7 8.0 81 2-85 1-160 (351) 327 pfam06408 consensus 73.2 6.6 0.00017 18.6 5.3 78 3-83 3-108 (471) 328 TIGR03169 Nterm_to_SelD pyridi 72.6 6 0.00015 18.9 4.0 34 3-37 1-36 (364) 329 cd05296 GH4_P_beta_glucosidase 72.5 6.9 0.00018 18.5 4.7 111 2-117 1-146 (419) 330 PRK06046 alanine dehydrogenase 72.3 6.9 0.00018 18.5 5.3 12 294-305 297-308 (326) 331 PRK06217 hypothetical protein; 72.1 3.6 9.2E-05 20.3 2.8 31 1-31 1-34 (185) 332 TIGR03025 EPS_sugtrans exopoly 71.8 7.1 0.00018 18.4 9.5 77 2-79 126-221 (445) 333 PRK07432 5'-methylthioadenosin 71.7 4.1 0.0001 19.9 3.0 89 3-97 5-105 (290) 334 TIGR01763 MalateDH_bact malate 71.6 4.6 0.00012 19.6 3.2 41 2-43 2-47 (308) 335 COG1052 LdhA Lactate dehydroge 71.6 7.2 0.00018 18.4 5.1 67 10-83 8-74 (324) 336 COG4408 Uncharacterized protei 71.5 7.2 0.00018 18.4 5.7 86 1-87 4-151 (431) 337 pfam10087 DUF2325 Uncharacteri 71.4 7.3 0.00019 18.4 8.3 84 3-87 1-87 (96) 338 COG0654 UbiH 2-polyprenyl-6-me 71.3 7.3 0.00019 18.4 4.3 33 1-35 2-34 (387) 339 PRK06753 hypothetical protein; 71.2 6.6 0.00017 18.7 3.9 30 2-33 1-30 (373) 340 TIGR01408 Ube1 ubiquitin-activ 71.0 7.4 0.00019 18.3 4.2 66 2-68 432-552 (1033) 341 KOG1221 consensus 70.2 7.7 0.0002 18.2 4.7 38 3-40 14-52 (467) 342 PRK06407 ornithine cyclodeamin 70.0 7.8 0.0002 18.2 4.6 17 294-310 282-298 (302) 343 cd05568 PTS_IIB_bgl_like PTS_I 69.9 7.9 0.0002 18.2 5.2 55 2-60 1-57 (85) 344 PRK10360 DNA-binding transcrip 69.3 8.1 0.00021 18.1 6.3 69 1-71 1-71 (196) 345 TIGR01988 Ubi-OHases Ubiquinon 69.2 8.1 0.00021 18.1 4.3 33 3-36 1-37 (445) 346 PRK08010 pyridine nucleotide-d 68.9 8.2 0.00021 18.1 6.2 24 60-83 168-191 (441) 347 COG3400 Uncharacterized protei 68.8 8.1 0.00021 18.1 4.0 55 1-59 1-58 (471) 348 PRK09436 thrA bifunctional asp 67.6 8.8 0.00022 17.9 7.9 30 2-32 466-501 (817) 349 KOG2012 consensus 67.4 4.4 0.00011 19.7 2.4 66 2-68 431-548 (1013) 350 PRK09009 C factor cell-cell si 67.3 8.9 0.00023 17.9 4.1 31 2-32 1-32 (235) 351 PRK09564 coenzyme A disulfide 67.0 9 0.00023 17.8 6.5 34 2-36 1-35 (443) 352 TIGR01421 gluta_reduc_1 glutat 66.5 5.4 0.00014 19.2 2.7 22 2-24 182-203 (475) 353 PRK11730 fadB multifunctional 66.5 9.2 0.00023 17.8 7.9 86 2-89 314-435 (715) 354 PRK09853 putative selenate red 66.1 9.4 0.00024 17.7 5.8 36 2-39 551-586 (1032) 355 PRK12831 putative oxidoreducta 65.8 9.5 0.00024 17.7 5.7 37 2-40 141-177 (464) 356 KOG2742 consensus 65.7 3.3 8.5E-05 20.5 1.5 84 4-90 5-107 (367) 357 PRK08931 5'-methylthioadenosin 65.3 2.7 6.9E-05 21.0 1.0 90 1-96 1-104 (289) 358 cd05191 NAD_bind_amino_acid_DH 64.9 9.9 0.00025 17.6 6.3 46 2-64 24-69 (86) 359 PRK01390 murD UDP-N-acetylmura 64.1 10 0.00026 17.5 6.1 74 2-79 10-97 (457) 360 KOG1496 consensus 63.9 10 0.00026 17.5 7.1 68 2-69 5-102 (332) 361 cd02201 FtsZ_type1 FtsZ is a G 63.9 10 0.00026 17.4 9.7 88 2-90 1-130 (304) 362 COG1486 CelF Alpha-galactosida 63.6 10 0.00027 17.4 4.6 57 1-57 3-85 (442) 363 PRK12384 sorbitol-6-phosphate 63.4 11 0.00027 17.4 7.1 86 1-87 1-94 (259) 364 PRK07578 short chain dehydroge 63.3 11 0.00027 17.4 6.0 23 2-24 1-23 (199) 365 PRK08263 short chain dehydroge 63.2 11 0.00027 17.4 5.3 99 1-105 2-103 (275) 366 PRK06370 mercuric reductase; V 62.7 11 0.00028 17.3 4.6 22 2-24 5-26 (459) 367 TIGR02053 MerA mercuric reduct 62.6 7.9 0.0002 18.2 2.9 81 1-100 181-266 (494) 368 PRK08849 2-octaprenyl-3-methyl 62.6 11 0.00028 17.3 4.4 32 1-34 1-34 (384) 369 PRK05600 thiamine biosynthesis 62.3 11 0.00028 17.3 7.4 119 2-123 42-207 (370) 370 TIGR03315 Se_ygfK putative sel 61.3 12 0.00029 17.2 5.5 36 2-39 538-573 (1012) 371 pfam02800 Gp_dh_C Glyceraldehy 61.2 12 0.00029 17.2 6.6 107 124-241 3-112 (158) 372 KOG3985 consensus 61.2 12 0.00029 17.1 3.6 87 1-97 9-111 (283) 373 COG3320 Putative dehydrogenase 61.2 12 0.00029 17.1 4.3 31 3-33 2-32 (382) 374 PRK08644 thiamine biosynthesis 61.1 12 0.00029 17.1 8.1 78 2-82 28-149 (209) 375 pfam02056 Glyco_hydro_4 Family 61.0 12 0.0003 17.1 4.3 114 3-117 1-146 (183) 376 TIGR01350 lipoamide_DH dihydro 60.4 12 0.0003 17.1 6.5 97 3-117 180-281 (481) 377 PRK08850 2-octaprenyl-6-methox 60.3 12 0.00031 17.0 3.8 28 4-33 7-34 (405) 378 PRK06015 keto-hydroxyglutarate 59.9 12 0.00031 17.0 4.3 111 14-124 5-122 (212) 379 PRK06101 short chain dehydroge 59.5 12 0.00032 17.0 5.6 36 1-37 1-36 (241) 380 COG1058 CinA Predicted nucleot 59.5 12 0.00032 17.0 5.4 103 17-124 26-140 (255) 381 TIGR03329 Phn_aa_oxid putative 59.4 12 0.00032 17.0 4.0 31 3-34 26-57 (460) 382 TIGR01087 murD UDP-N-acetylmur 59.4 12 0.00032 17.0 5.0 134 3-162 1-155 (476) 383 COG0075 Serine-pyruvate aminot 59.2 13 0.00032 16.9 9.1 118 28-153 57-176 (383) 384 PRK06199 ornithine cyclodeamin 59.1 13 0.00032 16.9 4.8 15 49-63 73-87 (379) 385 PTZ00188 adrenodoxin reductase 59.1 13 0.00032 16.9 6.8 58 2-60 40-137 (506) 386 KOG0409 consensus 58.7 13 0.00033 16.9 5.0 63 1-65 35-107 (327) 387 TIGR02735 purC_vibrio phosphor 58.4 4.7 0.00012 19.6 1.2 28 60-94 88-115 (365) 388 TIGR00745 apbA_panE 2-dehydrop 58.4 13 0.00033 16.8 8.4 94 3-97 1-126 (332) 389 PRK07818 dihydrolipoamide dehy 57.6 13 0.00034 16.8 5.7 20 4-24 7-26 (467) 390 PRK08773 2-octaprenyl-3-methyl 57.4 13 0.00034 16.7 4.0 29 4-34 9-37 (392) 391 COG1086 Predicted nucleoside-d 57.3 13 0.00034 16.7 6.4 75 2-77 117-208 (588) 392 PRK06698 bifunctional 5'-methy 57.3 13 0.00033 16.8 3.3 25 1-28 1-25 (459) 393 pfam01262 AlaDh_PNT_C Alanine 57.2 14 0.00034 16.7 6.1 19 65-83 35-53 (150) 394 COG0604 Qor NADPH:quinone redu 57.0 14 0.00035 16.7 8.2 80 3-83 145-244 (326) 395 TIGR01318 gltD_gamma_fam gluta 56.7 14 0.00035 16.7 5.6 36 2-39 144-179 (480) 396 PRK06482 short chain dehydroge 56.7 14 0.00035 16.7 7.0 83 1-84 1-86 (276) 397 cd01485 E1-1_like Ubiquitin ac 56.6 14 0.00035 16.7 7.6 27 2-29 20-46 (198) 398 pfam02719 Polysacc_synt_2 Poly 56.5 14 0.00035 16.7 4.7 32 4-35 1-32 (280) 399 cd01492 Aos1_SUMO Ubiquitin ac 56.5 14 0.00035 16.6 8.7 70 2-72 22-133 (197) 400 PRK07455 keto-hydroxyglutarate 56.1 14 0.00036 16.6 4.4 110 15-124 4-120 (210) 401 PRK07233 hypothetical protein; 56.0 14 0.00036 16.6 4.2 38 3-42 1-38 (430) 402 PRK11154 fadJ multifunctional 55.9 14 0.00036 16.6 7.1 87 2-89 310-432 (706) 403 PRK06116 glutathione reductase 55.7 14 0.00036 16.6 5.3 19 266-284 385-403 (450) 404 PRK09414 glutamate dehydrogena 55.2 15 0.00037 16.5 6.4 12 291-302 423-434 (446) 405 PRK12550 shikimate 5-dehydroge 55.0 15 0.00037 16.5 4.9 116 36-161 20-142 (272) 406 PRK13018 cell division protein 54.9 15 0.00038 16.5 9.8 87 3-90 29-157 (387) 407 PRK07236 hypothetical protein; 54.7 15 0.00038 16.5 3.8 30 2-33 7-36 (386) 408 PRK06552 keto-hydroxyglutarate 54.6 15 0.00038 16.5 3.8 110 14-124 3-123 (209) 409 PTZ00318 NADH dehydrogenase; P 54.2 15 0.00039 16.4 4.0 33 3-37 12-44 (514) 410 PRK08013 hypothetical protein; 54.0 15 0.00039 16.4 4.0 32 1-34 1-34 (400) 411 PRK07588 hypothetical protein; 53.3 16 0.0004 16.3 3.9 29 2-32 1-29 (391) 412 PRK09126 hypothetical protein; 53.3 16 0.0004 16.3 3.8 32 1-34 1-34 (392) 413 PRK09310 aroDE bifunctional 3- 53.2 16 0.0004 16.3 4.7 11 110-120 134-144 (477) 414 PRK08163 salicylate hydroxylas 53.2 16 0.0004 16.3 4.3 32 2-35 5-36 (396) 415 KOG0069 consensus 53.1 16 0.0004 16.3 5.5 13 293-305 310-322 (336) 416 PRK13581 D-3-phosphoglycerate 53.1 16 0.0004 16.3 5.4 59 2-62 139-205 (524) 417 pfam06263 consensus 52.9 8.3 0.00021 18.0 1.7 88 47-148 113-201 (514) 418 PRK06091 membrane protein FdrA 52.9 8.3 0.00021 18.0 1.7 88 47-148 115-203 (555) 419 COG0579 Predicted dehydrogenas 52.7 16 0.00041 16.3 4.8 32 1-33 3-35 (429) 420 KOG1399 consensus 52.4 16 0.00041 16.2 3.8 29 2-32 7-35 (448) 421 cd04161 Arl2l1_Arl13_like Arl2 52.3 16 0.00041 16.2 5.8 143 4-155 2-152 (167) 422 PTZ00052 thioredoxin reductase 52.0 16 0.00042 16.2 3.9 19 4-23 44-62 (541) 423 KOG1429 consensus 51.8 15 0.00039 16.4 2.9 23 2-24 28-50 (350) 424 COG4987 CydC ABC-type transpor 50.7 14 0.00035 16.7 2.5 17 145-161 368-384 (573) 425 COG2099 CobK Precorrin-6x redu 50.6 17 0.00044 16.1 6.8 94 1-103 2-106 (257) 426 PRK07411 hypothetical protein; 50.4 17 0.00044 16.0 7.1 87 2-91 39-168 (390) 427 TIGR02374 nitri_red_nirB nitri 50.2 16 0.00042 16.2 2.9 35 4-39 1-38 (813) 428 PRK09986 DNA-binding transcrip 49.6 16 0.0004 16.3 2.7 60 2-63 83-144 (278) 429 PRK03815 murD UDP-N-acetylmura 49.3 18 0.00046 15.9 5.6 63 2-67 1-72 (401) 430 PRK08219 short chain dehydroge 49.0 18 0.00047 15.9 7.2 32 1-34 3-34 (226) 431 PRK06416 dihydrolipoamide dehy 48.4 19 0.00048 15.8 5.3 30 2-33 5-34 (462) 432 COG3840 ThiQ ABC-type thiamine 47.9 19 0.00048 15.8 4.0 38 3-40 27-66 (231) 433 PRK05976 dihydrolipoamide dehy 47.8 19 0.00049 15.8 5.6 27 4-32 7-33 (464) 434 PRK12549 shikimate 5-dehydroge 47.7 19 0.00049 15.8 4.7 16 146-161 132-147 (284) 435 PRK07538 hypothetical protein; 47.7 19 0.00049 15.8 3.9 30 2-33 1-30 (413) 436 COG4091 Predicted homoserine d 47.5 19 0.00049 15.8 3.9 34 2-36 18-51 (438) 437 PRK05732 2-octaprenyl-6-methox 47.1 20 0.0005 15.7 4.4 32 1-33 1-36 (395) 438 TIGR00101 ureG urease accessor 47.0 20 0.0005 15.7 3.1 85 1-87 1-128 (199) 439 pfam10662 PduV-EutP Ethanolami 46.9 17 0.00043 16.1 2.5 24 1-24 1-24 (143) 440 cd06335 PBP1_ABC_ligand_bindin 46.5 20 0.00051 15.7 8.2 53 26-80 40-96 (347) 441 TIGR01001 metA homoserine O-su 45.8 21 0.00052 15.6 2.9 27 14-40 51-78 (305) 442 COG4565 CitB Response regulato 45.5 21 0.00053 15.6 6.1 83 2-86 1-87 (224) 443 cd06268 PBP1_ABC_transporter_L 45.5 21 0.00053 15.6 6.5 55 26-82 40-97 (298) 444 TIGR02041 CysI sulfite reducta 45.4 11 0.00028 17.3 1.4 21 82-102 377-397 (550) 445 PRK07261 topology modulation p 45.4 21 0.00053 15.6 3.0 31 2-32 1-34 (171) 446 COG0665 DadA Glycine/D-amino a 44.3 22 0.00055 15.5 4.8 34 1-36 4-37 (387) 447 cd01493 APPBP1_RUB Ubiquitin a 44.3 22 0.00055 15.5 7.5 80 2-82 21-146 (425) 448 PRK02472 murD UDP-N-acetylmura 44.1 22 0.00056 15.4 6.6 72 2-75 10-98 (450) 449 TIGR01192 chvA glucan exporter 43.8 18 0.00047 15.9 2.3 24 4-27 364-389 (592) 450 PRK07494 2-octaprenyl-6-methox 43.4 22 0.00057 15.4 4.3 30 4-35 8-37 (386) 451 PRK13059 putative lipid kinase 43.3 22 0.00057 15.4 7.2 83 1-84 1-93 (294) 452 PRK08774 consensus 43.2 23 0.00057 15.4 4.2 33 1-35 1-36 (402) 453 PRK12743 acetoin dehydrogenase 42.9 23 0.00058 15.3 6.3 87 1-88 1-94 (253) 454 PRK13949 shikimate kinase; Pro 42.9 23 0.00058 15.3 3.9 42 1-43 1-45 (169) 455 PRK11101 glpA sn-glycerol-3-ph 42.8 23 0.00058 15.3 5.4 87 2-90 6-129 (545) 456 TIGR03023 WcaJ_sugtrans Undeca 42.8 23 0.00058 15.3 9.9 77 2-79 129-224 (451) 457 KOG0405 consensus 42.3 23 0.00059 15.3 2.8 12 281-292 316-327 (478) 458 PRK11914 diacylglycerol kinase 42.3 23 0.00059 15.3 6.9 83 1-84 6-97 (304) 459 pfam09314 DUF1972 Domain of un 42.2 23 0.00059 15.3 8.8 57 1-59 1-65 (185) 460 PRK10522 multidrug transporter 42.1 23 0.0006 15.3 2.9 10 148-157 356-365 (547) 461 PRK01747 mnmC 5-methylaminomet 41.8 24 0.0006 15.2 4.5 30 3-34 258-287 (660) 462 PRK07845 flavoprotein disulfid 41.5 24 0.00061 15.2 6.8 30 1-32 1-30 (467) 463 PRK08762 molybdopterin biosynt 41.4 24 0.00061 15.2 7.8 49 48-97 57-107 (379) 464 cd01075 NAD_bind_Leu_Phe_Val_D 41.1 24 0.00062 15.2 5.6 22 2-24 29-50 (200) 465 TIGR03013 EpsB_2 sugar transfe 40.9 24 0.00062 15.1 7.2 81 2-85 125-223 (442) 466 PRK12862 malic enzyme; Reviewe 40.8 24 0.00062 15.1 10.1 70 2-72 193-284 (761) 467 KOG2304 consensus 40.8 23 0.0006 15.2 2.5 36 1-38 11-46 (298) 468 PRK08020 ubiF 2-octaprenyl-3-m 40.6 25 0.00063 15.1 4.1 30 3-34 7-36 (391) 469 KOG3923 consensus 40.5 25 0.00063 15.1 3.5 64 1-67 3-74 (342) 470 PRK10651 transcriptional regul 40.4 25 0.00063 15.1 4.0 79 2-82 7-87 (216) 471 COG0608 RecJ Single-stranded D 40.2 25 0.00064 15.1 7.6 110 3-116 38-153 (491) 472 PRK05249 soluble pyridine nucl 40.1 25 0.00064 15.1 6.2 28 3-32 8-35 (465) 473 cd06326 PBP1_STKc_like Type I 40.0 25 0.00064 15.1 6.7 53 26-80 41-97 (336) 474 PRK06857 consensus 39.4 26 0.00066 15.0 4.7 110 15-124 3-119 (209) 475 TIGR01984 UbiH 2-polyprenyl-6- 39.3 19 0.00047 15.9 1.8 29 3-32 1-33 (425) 476 PRK13748 putative mercuric red 39.3 26 0.00066 15.0 5.3 31 49-81 98-129 (561) 477 TIGR02324 CP_lyasePhnL phospho 39.2 12 0.00031 17.0 0.8 39 143-189 36-74 (224) 478 PRK08887 nicotinic acid mononu 39.1 15 0.00039 16.4 1.3 10 1-10 1-10 (173) 479 cd02191 FtsZ FtsZ is a GTPase 39.1 26 0.00066 15.0 9.1 91 3-94 2-134 (303) 480 PRK08243 4-hydroxybenzoate 3-m 38.9 26 0.00067 14.9 3.0 29 3-33 4-32 (392) 481 PRK07846 mycothione/glutathion 38.8 26 0.00067 14.9 5.1 23 61-83 179-201 (453) 482 PRK13947 shikimate kinase; Pro 38.7 26 0.00067 14.9 3.7 42 1-43 1-45 (171) 483 COG2072 TrkA Predicted flavopr 38.6 26 0.00067 14.9 4.5 37 1-39 8-45 (443) 484 cd04509 PBP1_ABC_transporter_G 38.6 26 0.00067 14.9 8.8 55 26-82 40-98 (299) 485 PRK01395 V-type ATP synthase s 38.4 16 0.0004 16.3 1.2 30 49-79 22-51 (104) 486 PRK07333 2-octaprenyl-6-methox 38.3 27 0.00068 14.9 4.5 32 3-35 3-35 (403) 487 PRK06714 S-adenosylhomocystein 38.3 16 0.0004 16.3 1.3 23 1-23 1-23 (236) 488 PRK12775 putative trifunctiona 38.3 27 0.00068 14.9 5.7 35 3-39 434-468 (993) 489 PTZ00293 thymidine kinase; Pro 38.3 27 0.00068 14.9 4.8 47 46-96 74-128 (284) 490 PRK07251 pyridine nucleotide-d 38.0 27 0.00069 14.8 5.9 24 61-84 168-191 (438) 491 TIGR01281 DPOR_bchL light-inde 37.7 11 0.00028 17.3 0.4 17 222-238 229-245 (275) 492 PRK05718 keto-hydroxyglutarate 37.7 27 0.0007 14.8 5.7 110 15-124 6-122 (212) 493 cd06343 PBP1_ABC_ligand_bindin 37.4 28 0.00071 14.8 5.8 85 1-85 144-235 (362) 494 COG0562 Glf UDP-galactopyranos 37.1 28 0.00071 14.8 4.6 37 1-39 1-37 (374) 495 PRK07024 short chain dehydroge 36.6 29 0.00073 14.7 5.4 57 1-58 2-86 (256) 496 COG2130 Putative NADP-dependen 36.4 29 0.00073 14.7 5.3 80 4-85 154-254 (340) 497 PRK12824 acetoacetyl-CoA reduc 36.4 29 0.00073 14.7 7.2 101 1-106 1-107 (245) 498 PRK13657 cyclic beta-1,2-gluca 36.3 29 0.00073 14.7 2.6 21 3-23 363-383 (585) 499 cd06334 PBP1_ABC_ligand_bindin 36.3 29 0.00073 14.7 8.4 84 1-84 140-230 (351) 500 KOG2015 consensus 36.3 29 0.00074 14.7 5.3 64 3-67 42-147 (422) No 1 >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR000706 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (AGPR) , is the enzyme that catalyzes the third step in the biosynthesis of arginine from glutamate, the NADP-dependent reduction of N-acetyl-5-glutamyl phosphate into N-acetylglutamate 5-semialdehyde. In bacteria it is a monofunctional protein of 35 to 38 kD (gene argC), while in fungi it is part of a bifunctional mitochondrial enzyme (gene ARG5,6, arg11 or arg-6) which contains a N-terminal acetylglutamate kinase (2.7.2.8 from EC) domain and a C-terminal AGPR domain. In the Escherichia coli enzyme, a cysteine has been shown to be implicated in the catalytic activity, and the region around this residue is well conserved.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process. Probab=100.00 E-value=0 Score=601.52 Aligned_cols=294 Identities=29% Similarity=0.441 Sum_probs=262.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCC-----------------------HHHH-CCCCEEEE Q ss_conf 079997588678999999986299728999965300--786006-----------------------6774-79989999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYR-----------------------EDLL-NAADVSIL 55 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~-----------------------~~~~-~~~Divf~ 55 (311) +||||||||||+|.||+|||.+||.+|+..+.|+++ +||++. ++.. ++||+||+ T Consensus 1 ~~V~IvGAsGYtG~EL~RLL~~HP~~e~~~~~ss~~~~aG~~~~~~~P~L~g~~~~~~~~~~~~~~~~~~~L~~~DvVFl 80 (361) T TIGR01850 1 IKVGIVGASGYTGGELLRLLANHPEVEITYLVSSRESLAGKPLSEVHPHLRGLVDYLNLEPLDDAKLEEIELEDADVVFL 80 (361) T ss_pred CEEEEEECCCHHHHHHHHHHHCCCCEEEEEEEEEEEHHCCCCHHHHCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCEEEE T ss_conf 96899933444689999998419953788888762011385257736611101002333666766788862137678998 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH------------------HHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 38983789999998612584898227630355543------------------110021000477652049607725842 Q gi|254780294|r 56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG------------------WVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~------------------vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) ||||++|++++|.+.++| ++|||+|+|||+++. ++|++||++. +++.++++++|||||| T Consensus 81 AlPhgvs~~~~p~~l~~g--~~ViDLSADFRl~d~~~Ye~wYG~h~~~~ll~~avYGLpEl~~-~re~i~~A~liAnPGC 157 (361) T TIGR01850 81 ALPHGVSMELAPELLEAG--VKVIDLSADFRLKDPEVYEKWYGFHAAPELLQEAVYGLPELHG-AREEIKGARLIANPGC 157 (361) T ss_pred CCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCHHHHHHHCCCCCCHHHHHHCCCCCCCCCH-HHHHHHCCCEEECCCC T ss_conf 687255699999998479--8699888343369979999966778896666311556767010-5889842957644886 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC---- Q ss_conf 1133112478888850345565026765123333561000000134443223433222223444443420133216---- Q gi|254780294|r 118 YATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSL---- 193 (311) Q Consensus 118 ~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~---- 193 (311) |+|+++|+|+||.+...+.....++++++||+||||+++....+.+ +..+|..+|.....|||.|||+|.+. T Consensus 158 YpTA~~LaL~PL~~~~l~~~~~~~i~dakSGvSGAGr~as~~~~~~----E~~en~~pY~~~G~HRH~PEI~q~L~~~~~ 233 (361) T TIGR01850 158 YPTATLLALAPLLKEGLIDPTSEIIVDAKSGVSGAGRKASEKSHFP----EVNENLRPYKVTGGHRHTPEIEQELGKLAG 233 (361) T ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCHH----HHHCCCEECCCCCCCCCHHHHHHHHHHHHC T ss_conf 1789999989999831567677658988744556677776335734----432770620379985027999998767630 Q ss_pred --CCEEEEEEEECCCCCCEEEEEEEEEEECCCCC-CCHHHHHHHHHHHHCCCCCCEEEC--CCCCCCCCCCCHHHHCCCC Q ss_conf --71136887520343320278999986325775-448998866542200144305602--7878878986427627996 Q gi|254780294|r 194 --IKTSPMFLPSVGRFPQGIAIQISLDMERLSWK-TNSEELHSIFQEYYMGQNIVSVVP--LEESRKIKTIACEMMSGND 268 (311) Q Consensus 194 --~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~~--~~~~~~~~~p~~~~~~g~n 268 (311) ...++.||||++|+.|||++|+++. ..+. .+.+|+++.|.++|++++||+|++ .+ .+|++++|.||| T Consensus 234 ~~~~~~v~FTPHL~P~~RGIl~T~~~~---l~~~~~~~~~~~~~Y~~~Y~~epFVrv~~~G~~-----~~P~tk~V~GsN 305 (361) T TIGR01850 234 GIDKVKVSFTPHLVPMTRGILATIYAK---LKDGSLTEEDLRKLYEEFYADEPFVRVLPKGEG-----EYPSTKAVRGSN 305 (361) T ss_pred CCCCEEEEEEEEECCCCCCCEEEEEEE---ECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-----CCCCEEEEEECC T ss_conf 448727999863126235320127687---268998889999999997127971798227789-----878614775358 Q ss_pred EEEEE-EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf 07999-9980899769999972221013689999999987238 Q gi|254780294|r 269 KLHLF-FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 269 ~v~Vg-~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) +|+|| +..|+++++++++|+||||+||||||||||||||||- T Consensus 306 ~cdIGG~~~d~~~~r~vv~SaIDNLvKGAAGQAvQN~N~m~G~ 348 (361) T TIGR01850 306 FCDIGGFAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMFGF 348 (361) T ss_pred CEEEEEEEEECCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCC T ss_conf 3887337886578889999852112467999999999863588 No 2 >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional Probab=100.00 E-value=0 Score=562.33 Aligned_cols=307 Identities=49% Similarity=0.843 Sum_probs=285.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861258489822 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) |+||+|+|||||+|.||+|+|.+||.+||..++++++.+...+.+.++++|++|+|+||++|+++++.+.+.| ++||| T Consensus 2 ~~kV~I~GasGytG~EL~rlL~~Hp~vel~~i~~~~~k~~~~~~~~~~~~DvvFlalPh~~s~~~v~~~~~~g--~kVID 79 (314) T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDPAARRELLNAADIAILCLPDDAAREAVALIDNPA--TRVID 79 (314) T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHCC--CEEEE T ss_conf 8269998998856999999997599829999671125575567877506999999999778999999886279--88998 Q ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHC Q ss_conf 76303555431100210004776520496077258421133112478888850345565026765123333561000000 Q gi|254780294|r 81 TSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRM 160 (311) Q Consensus 81 ~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~ 160 (311) +|+|||++++|.|++||+|+++++.++++++|||||||+|+++++|+||.+.+++.....++++++||+||||+++.+.. T Consensus 80 LSaDfRl~~~wvYGlPEl~~~~r~~I~~a~~IAnPGCyaTa~iL~L~PL~~~gli~~~~~i~i~a~SG~SGAGk~~~~~~ 159 (314) T PRK11863 80 ASTAHRTAPGWVYGFPELAPGQRERIAAARRVANPGCYPTGAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAY 159 (314) T ss_pred CCCCCCCCCCCEEECCCCCHHHHHHHHHCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCC T ss_conf 98544579997733650687789998629863279828999999999999768878888469984102566776653234 Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHC Q ss_conf 13444322343322222344444342013321671136887520343320278999986325775448998866542200 Q gi|254780294|r 161 EQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYM 240 (311) Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~ 240 (311) +.... .....++.+|..+..|+|.||+++.......+.|+||++|+.|||+.|++++...+.+..+.+++++.|.++|+ T Consensus 160 ~~~~~-~~~~~~~~~Y~~~~~HrH~pEI~q~~~~~~~~~F~Phl~p~~RGIl~Tiy~~~~~l~~~~~~~~i~~~y~~~Y~ 238 (314) T PRK11863 160 EAGGP-KGTAPAFRLYGLGLAHKHLPEMQAHAGLARRPIFVPSVGNFRQGMLVTVPLHLDLLPGGPTGEDLHAALADHYA 238 (314) T ss_pred CCCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCEEEEEEECCHHHCCCCCCHHHHHHHHHHHHC T ss_conf 46542-12334531136876757899999985888875231115574760469952246651789999999999999868 Q ss_pred CCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf 1443056027878878986427627996079999980899769999972221013689999999987238 Q gi|254780294|r 241 GQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 241 ~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) +++||+|++.+..+..+.+.|+.+.|||+|+||+..|++.++++++|++|||+||||||||||||||||. T Consensus 239 ~epFV~v~~~~~~~~~~~v~~~~v~gtN~~~I~v~~d~~~~~~vv~saIDNL~KGAAGQAVQnmNlm~G~ 308 (314) T PRK11863 239 GEAFVRVAPLEESAALDRLDPEALNGTNRLELFVFGNEEHGQAVLVARLDNLGKGASGAAVQNLNLMLGL 308 (314) T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCC T ss_conf 9997899478888765633422348996489999970899999999983145725799999999987199 No 3 >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated Probab=100.00 E-value=0 Score=554.32 Aligned_cols=291 Identities=29% Similarity=0.457 Sum_probs=254.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH------------------HHH-CCCCEEEECCCCHH Q ss_conf 90799975886789999999862997289999653007860066------------------774-79989999389837 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE------------------DLL-NAADVSILCLPDVA 61 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~------------------~~~-~~~Divf~a~p~~~ 61 (311) |+||||+|||||||+||+++|.+||++++.+++|++|+||++.+ +.+ .++|++|||+|+++ T Consensus 1 m~kVaIvGAtG~vG~eli~lL~~hp~~ei~~las~~saGk~i~~~~p~l~~~~~~~~~~~~~~~~~~~~Divf~alp~~~ 80 (345) T PRK00436 1 MIKVAIVGASGYTGGELLRLLLNHPEVEIVYLTSRSSAGKPLSDLHPHLRGLVDLVLEPLDPEEIAAGADVVFLALPHGV 80 (345) T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCCEEEECCCHHH T ss_conf 91999989661889999999980998679999757868973778581103777874764998894269999998898389 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHH-------------------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCC Q ss_conf 8999999861258489822763035554-------------------311002100047765204960772584211331 Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAHRIAP-------------------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGA 122 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~R~~~-------------------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~ 122 (311) |++|++++.++| ++|||+|+||||++ ++.|++||+|++ .++++++|||||||+|++ T Consensus 81 S~~~~~~~~~~g--~~VID~SsdfR~~~~~~~~~~Y~~~h~~~~l~~~~vYGlPE~n~~---~ik~~~iIANPgC~at~~ 155 (345) T PRK00436 81 SMELAPQLLEAG--VKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNRE---EIKGARLIANPGCYPTAS 155 (345) T ss_pred HHHHHHHHHHCC--CEEEECCHHHHCCCCCCHHHCCCCCCCCHHHHHHHEECCHHHHHH---HHHHCCEECCCCCHHHHH T ss_conf 999999998669--879989701203676432210587778844632220076024366---663255600799478999 Q ss_pred HHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC---CEEEE Q ss_conf 124788888503455650267651233335610000001344432234332222234444434201332167---11368 Q gi|254780294|r 123 IAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---KTSPM 199 (311) Q Consensus 123 ~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---~~~~~ 199 (311) +++|+||++.++++ ...++++++||+||||+++....+.. ...+++.+|.. ..|+|.||+.+.... ...+. T Consensus 156 ~laL~PL~~~~li~-~~~iiv~a~sg~SGAGk~~~~~~~~~----e~~~n~~~Y~~-~~HrH~pEi~q~l~~~~~~~~v~ 229 (345) T PRK00436 156 LLALAPLLKAGLID-PDSIIIDAKSGVSGAGRKASEGSLFS----EVNENLRAYGV-GGHRHTPEIEQELSGLAGEVVVS 229 (345) T ss_pred HHHHHHHHHHCCCC-CCCEEEEEEEECCCCCCCCCHHHHHH----HHHCCEECCCC-CCCCCCHHHHHHHHHHCCCCEEE T ss_conf 99999999837866-68469998774453665864000257----77245602546-78787189999987308997189 Q ss_pred EEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECC Q ss_conf 87520343320278999986325775448998866542200144305602787887898642762799607999998089 Q gi|254780294|r 200 FLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSE 279 (311) Q Consensus 200 ~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~ 279 (311) |+|+++|+.|||+.|+++. +..+.+.+++++.|.++|++++||+|++.+ .+|+|+++.|+|.|+||+.+|++ T Consensus 230 ftp~~vPv~rGi~~ti~~~---~~~~~s~~~i~~~l~~~Y~~~pfV~v~~~~-----~~P~~~~v~gtn~~~ig~~~d~~ 301 (345) T PRK00436 230 FTPHLVPMTRGILATIYAR---LKDGVTAEDLRAAYEEFYADEPFVRVLPEG-----QYPETKSVRGSNFCDIGFAVDER 301 (345) T ss_pred EEEEECCCCCEEEEEEEEE---ECCCCCHHHHHHHHHHHHCCCCCEEECCCC-----CCCCHHHHCCCCCEEEEEEEECC T ss_conf 9836637666068999999---579863677889999983689868985899-----99987781698718999998089 Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf 9769999972221013689999999987238 Q gi|254780294|r 280 LPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 280 ~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) ++++|+||++|||+||||||||||||||||. T Consensus 302 ~~~l~i~s~~DNL~KGAAgqAVQn~Nl~~g~ 332 (345) T PRK00436 302 TGRLVVVSAIDNLVKGAAGQAVQNMNLMFGL 332 (345) T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 9989999985033430899999999988099 No 4 >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] Probab=100.00 E-value=0 Score=522.15 Aligned_cols=292 Identities=34% Similarity=0.524 Sum_probs=263.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH--------------------HCCCCEEEECCCCH Q ss_conf 9079997588678999999986299728999965300786006677--------------------47998999938983 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL--------------------LNAADVSILCLPDV 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~--------------------~~~~Divf~a~p~~ 60 (311) |.||+|+|||||+|.||+++|.+||.+|+...+|++++|+++++.. ..+||+||+|+||+ T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg 81 (349) T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHG 81 (349) T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECHHHCCCCHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCEEEEECCCH T ss_conf 81599977887748999999865997379996316645870687582423534554335774553015688899906863 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHH-------------------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC Q ss_conf 7899999986125848982276303555-------------------431100210004776520496077258421133 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTSTAHRIA-------------------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~-------------------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311) +|+++++.+.++| ++|||+|.|||+. ++|+|++||++. ++++++++|||||||+|+ T Consensus 82 ~s~~~v~~l~~~g--~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~---e~i~~A~lIAnPGCypTa 156 (349) T COG0002 82 VSAELVPELLEAG--CKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHR---EKIRGAKLIANPGCYPTA 156 (349) T ss_pred HHHHHHHHHHHCC--CEEEECCCCCCCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCH---HHHHCCCEEECCCCHHHH T ss_conf 6889899997479--94998873200577777788627777780133154334731298---888338773679832889 Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCC----EE Q ss_conf 11247888885034556502676512333356100000013444322343322222344444342013321671----13 Q gi|254780294|r 122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIK----TS 197 (311) Q Consensus 122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~----~~ 197 (311) ++++|+||.+...+.....++++++||+||||+++....+.++. .++..+|... .|+|.||+.|.+... .. T Consensus 157 ~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~----~~~~~~Y~~~-~HrH~pEi~q~l~~l~~~~~~ 231 (349) T COG0002 157 AILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEV----NDSLRPYGLT-GHRHTPEIEQHLGRLAGRKVP 231 (349) T ss_pred HHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCHHH----CCCCCCCCCC-CCCCHHHHHHHHHHHCCCCCC T ss_conf 99988899876997888864899767467678785300255110----3663335445-667659999986010167676 Q ss_pred EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEE Q ss_conf 68875203433202789999863257754489988665422001443056027878878986427627996079999980 Q gi|254780294|r 198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDS 277 (311) Q Consensus 198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~ 277 (311) +.|+||++|+.|||++|+++.+.. ..+.+++++.|.++|++++||+|.+.+ .+|+++.+.|+|+|+||+..| T Consensus 232 v~FtPhl~p~~RGIl~Ti~~~l~~---~~t~~~i~~~y~~~Y~~epfVrv~~~~-----~~P~~k~V~GsN~cdIgf~~d 303 (349) T COG0002 232 VIFTPHLGPFVRGILATIYLKLKD---LVTLEELHAAYEEFYAGEPFVRVVPEG-----GYPDTKAVAGSNFCDIGFAVD 303 (349) T ss_pred EEEECEECCCCCEEEEEEEEECCC---CCCHHHHHHHHHHHHCCCCEEEECCCC-----CCCCHHHHCCCCCEEEEEEEC T ss_conf 178520666125089998874188---889999999999986799869970688-----999745515886328988875 Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf 899769999972221013689999999987238 Q gi|254780294|r 278 SELPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 278 ~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) +++++++++|++|||+||||||||||||||||. T Consensus 304 ~~~~rvvvvsaIDNL~KGAAGQAVQnmNim~G~ 336 (349) T COG0002 304 ERTGRVVVVSAIDNLVKGAAGQAVQNMNIMFGF 336 (349) T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCC T ss_conf 878889999970100234788999999987298 No 5 >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=504.55 Aligned_cols=295 Identities=17% Similarity=0.200 Sum_probs=241.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 907999758867899999998629--972899996530078600------------667747998999938983789999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) |+||||||||||||+||+++|++| |++++++++|++++|+++ +.+.|.++|++|||+|+++|++|+ T Consensus 2 m~kVaIvGATG~vG~eli~lL~~~~~p~~~i~~~aS~~s~G~~~~~~~~~~~~~~~~~~~~~~~Di~f~a~~~~~s~~~~ 81 (348) T PRK06598 2 MYNVGVVGATGMVGSVLLQMLEERDFPVIEPVFFASSRSGGKAPSFGGKTLLVDALDIEDLKGLDIALFSAGGDYSKEVA 81 (348) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEECCCEEEEEECCHHHHHCCCEEEECCCCHHHHHHH T ss_conf 84799989845999999999986799962499998756689875068955478627855760799999868823568888 Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 99861258489822763035554311002100047765204960772584211331124788888503455650267651 Q gi|254780294|r 67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAV 146 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~ 146 (311) +.+.++| ++|||+|++|||++++||++||+|++.++..+..++|||||||||+++++|+||++.+++++ ++++++ T Consensus 82 ~~~~~~g--~~VIDlSs~fR~~~~vplvvPEiN~~~i~~~~~~~iIAnPgC~~t~~~laL~PL~k~~~I~~---i~vsty 156 (348) T PRK06598 82 PKLRAAG--GVVIDNASALRMDPDVPLVVPEVNPDAIKDALKKGIIANPNCTTSLMLMALGPLHDAALIER---VVVSTY 156 (348) T ss_pred HHHHHCC--CEEEECCHHHCCCCCCEEECCCCCHHHHHHCCCCCCEECCCCHHHHHHHHHHHHHHHCCCEE---EEEEEE T ss_conf 9997589--89998864310368843764620789997341368223888199999999998998559513---258788 Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCC-------------C--CCCCCCCCCCCCCCCCH-------------------HHHC Q ss_conf 233335610000001344432234-------------3--32222234444434201-------------------3321 Q gi|254780294|r 147 SGYTGGGKKLISRMEQKNMPDTIS-------------S--NHFFYSLDLLHKHLPEI-------------------TQYS 192 (311) Q Consensus 147 sg~sgaG~~~~~~~~~~~~~~~~~-------------~--~~~~~~~~~~~~h~~e~-------------------~~~~ 192 (311) ||+||||+++++++..+....... . ....+..+..++..|++ .++. T Consensus 157 qavSGAG~~~v~eL~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~i~~~~~~g~t~EE~K~~~Et~kIL 236 (348) T PRK06598 157 QAVSGAGAAGMRELLTQMGALLAHVADELADPASAISDELPPDKFGVPIAFNLIPWIDKFLDNGQTKEEWKMVAETNKIL 236 (348) T ss_pred ECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHEE T ss_conf 52001568689999999998750443112453011025667443677503101565686455886889998888764121 Q ss_pred C-CCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEE Q ss_conf 6-711368875203433202789999863257754489988665422001443056027878878986427627996079 Q gi|254780294|r 193 L-IKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLH 271 (311) Q Consensus 193 ~-~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~ 271 (311) . ....+.+||+++|+.+||..++++.+. ...+.+++++.|..++. +.+.+..+...+|+|.++.|+|.|+ T Consensus 237 ~~~~l~Vs~T~vRVPv~~Gh~~ti~v~~~---~~i~~~~i~~~l~~~~~------v~~~~~~~~~~~p~p~~v~g~~~v~ 307 (348) T PRK06598 237 GDPDIPVDGTCVRVPVFRGHSEAVTIELK---KDVSVEEAEEILNEAPG------VVPNDKEATMRYLTPAAVTGTLAVP 307 (348) T ss_pred CCCCCCEEEEEEECCEECCEEEEEEEEEE---CCCCHHHHHHHHHCCCC------CEEECCCCCCCCCCHHHHCCCCCEE T ss_conf 68998356799983312217889999981---26888999999970899------5892276446899707747987679 Q ss_pred EEEEEEC--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHC Q ss_conf 9999808--9976999997222101368999999998723 Q gi|254780294|r 272 LFFFDSS--ELPYINIIAVFDNLGKGASGAAIQNMDLLLS 309 (311) Q Consensus 272 Vg~~~~~--~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g 309 (311) |||+|.+ ..+.+++|+++|||+||||||||||||||+- T Consensus 308 VGRiR~d~~~~~~l~l~~v~DNL~KGAA~~AVQ~~eil~~ 347 (348) T PRK06598 308 VGRIRKDNMGPNGLSLFTVGDQLLKGAAENLVQIAEILLE 347 (348) T ss_pred EEEEEECCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHC T ss_conf 9977874889998999998234478589999999999864 No 6 >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase; InterPro: IPR005986 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate-semialdehyde dehydrogenase most commonly found in bacteria. Note that some bacteria, such as Chlamydia, contain the enzyme from the other subgroup (IPR005676 from INTERPRO) instead.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process. Probab=100.00 E-value=0 Score=512.47 Aligned_cols=292 Identities=17% Similarity=0.240 Sum_probs=242.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCCC------------HH-HHCC--CCEEEECCCCHHHHHH Q ss_conf 7999758867899999998629--9728999965300786006------------67-7479--9899993898378999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRYR------------ED-LLNA--ADVSILCLPDVASLEI 65 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~~------------~~-~~~~--~Divf~a~p~~~s~~~ 65 (311) +||||||||.|||+|+++|++| |.-+++++||++|+|++++ .+ .|++ +||+|||+|..+|++| T Consensus 1 ~vAiVGATG~VGq~~lk~LeeR~FP~~~~~~~AS~RS~G~~~~F~gke~~v~~~~~~n~F~gekidIAlFSAGgsvSke~ 80 (350) T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASERSAGRKVTFKGKELEVEEAKKENSFEGEKIDIALFSAGGSVSKEF 80 (350) T ss_pred CEEEEECCCHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCEEEECCCEEEEECCCCCCCCCCCEEEEEEECCCHHHHHHH T ss_conf 94789626747999987641367877556441056788857851275366010100148887703345651531334888 Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 99986125848982276303555431100210004776520496077258421133112478888850345565026765 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINA 145 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~ 145 (311) +|++.+.| +.||||||+||||+||||+|||||...+...+..+|||||||+|++|+.+|+||++..+|++ ++++| T Consensus 81 aP~a~k~g--~~VIDntS~fR~D~dVPLVVPEVN~~~~~~~~~kgIIANPNCstIqmv~~LkPl~~~~~ikr---VvVST 155 (350) T TIGR01296 81 APKAAKAG--VIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFNKKGIIANPNCSTIQMVVVLKPLHDEAKIKR---VVVST 155 (350) T ss_pred HHHHHCCC--CEEEECCCCCCCCCCCCEEECCCCHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHCCEEE---EEEEE T ss_conf 78886087--57981762000578986344377847763478888145886007779884046563067458---99972 Q ss_pred ECCCCCCCCCCCHHCCCCCC-----------------------CCCCCCCCCCCCCCCC----------CCCCCCHHHHC Q ss_conf 12333356100000013444-----------------------3223433222223444----------44342013321 Q gi|254780294|r 146 VSGYTGGGKKLISRMEQKNM-----------------------PDTISSNHFFYSLDLL----------HKHLPEITQYS 192 (311) Q Consensus 146 ~sg~sgaG~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~----------~~h~~e~~~~~ 192 (311) ||++||||.+++++|.++.. +..+..|..++.-.+. .+...|..++. T Consensus 156 YQAVSGAG~~g~~eL~nQtka~~~~~E~~p~i~~~~~~~a~kf~~qIAFN~~P~Id~f~~dGsGYT~EE~Km~~Et~KIm 235 (350) T TIGR01296 156 YQAVSGAGNKGVEELKNQTKAVLEGKEKEPEIDALEVLKAKKFPYQIAFNAIPHIDKFKDDGSGYTKEETKMLFETRKIM 235 (350) T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 20035427999999899999985245888555543068888826750300001047412287866806678898634323 Q ss_pred C-CCEEEEEEEECCCCCCEEEEEEEEEEECCCC-CCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEE Q ss_conf 6-7113688752034332027899998632577-5448998866542200144305602787887898642762799607 Q gi|254780294|r 193 L-IKTSPMFLPSVGRFPQGIAIQISLDMERLSW-KTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKL 270 (311) Q Consensus 193 ~-~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v 270 (311) + ...++..||.|+|+++||..+|++.+ .+ ....+++++.++ +.+.|.++ |++.+..||||..+.|+|.+ T Consensus 236 g~~d~~vSaTCVRvPVf~GHS~S~~iEf---~~d~~~~e~~~E~Lk----~ApGV~~~--D~P~~~~Yp~P~~A~G~D~V 306 (350) T TIGR01296 236 GIPDLKVSATCVRVPVFTGHSESVNIEF---EKDEISPEDVREVLK----NAPGVVVI--DDPSQNLYPTPLEAVGEDEV 306 (350) T ss_pred CCCCCCEEEEEEECCCHHCCHHHHHHHH---CCCCCCHHHHHHHHC----CCCEEEEE--ECCCCCCCCCCHHEECCCCE T ss_conf 8877445157887411111123210011---168878889999734----79867998--76888778883101025715 Q ss_pred EEEEEEEC----CCCEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 99999808----997699999722210136899999999872 Q gi|254780294|r 271 HLFFFDSS----ELPYINIIAVFDNLGKGASGAAIQNMDLLL 308 (311) Q Consensus 271 ~Vg~~~~~----~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~ 308 (311) +|||+|.| +.+.+.+|++.||||||||+||||+||+.- T Consensus 307 fVGRIRkDPGl~~~~gl~lwvv~DNLRKGAA~N~vqIAE~L~ 348 (350) T TIGR01296 307 FVGRIRKDPGLSDENGLHLWVVADNLRKGAALNSVQIAELLI 348 (350) T ss_pred EEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH T ss_conf 675444478886678325899622124678888999999863 No 7 >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=494.97 Aligned_cols=288 Identities=17% Similarity=0.194 Sum_probs=236.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC------------------------HHHHCCCCEEEE Q ss_conf 907999758867899999998629972899996-5300786006------------------------677479989999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR------------------------EDLLNAADVSIL 55 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~------------------------~~~~~~~Divf~ 55 (311) |+||||||||||||+||+|+|.+||++|+..++ |++++|+++. +..+.++|++|+ T Consensus 3 kikvaIvGatGy~G~ELirlL~~HP~~ei~~l~aS~~~aGk~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~DvvF~ 82 (350) T PRK08664 3 KLKVGVLGATGLVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADLEVVSTDPVDVDDVDIVFS 82 (350) T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCEEEEECCHHHHCCCCEEEE T ss_conf 77799989842999999999970999668999965533788415520322346676444650798688457438999999 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHH--------HCCCCEEEECCCCCCCCCHHHHH Q ss_conf 3898378999999861258489822763035554311002100047765--------20496077258421133112478 Q gi|254780294|r 56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKE--------KIRSARYITNPGCYATGAIAILR 127 (311) Q Consensus 56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~--------~~~~~~iIanPnC~~t~~~laL~ 127 (311) |+||++|+++++.+.++| ++|||+|+|||+++++|+++||+|+++.. .++++++|||||||+|+++++|+ T Consensus 83 AlPhg~s~~~~~~l~~~g--~~VIDlSadfRl~~~~p~~~pE~n~~~~~~~~~~~~~~~~~~~lIanPGCy~Ta~~LaL~ 160 (350) T PRK08664 83 ALPSDVAAEVEEEFAKAG--KPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLTLALK 160 (350) T ss_pred CCCCHHHHHHHHHHHHCC--CEEEECCHHHCCCCCCCEECHHHCHHHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHHH T ss_conf 898269999999998779--889978622035578844542038887734688776413466578779718889999889 Q ss_pred HHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC---------CEEE Q ss_conf 8888503455650267651233335610000001344432234332222234444434201332167---------1136 Q gi|254780294|r 128 PLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---------KTSP 198 (311) Q Consensus 128 PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---------~~~~ 198 (311) ||++.. + ..++++++||+||||+++.+.+ +..+|..+|.....+++..|+.++... ..++ T Consensus 161 PL~~~~-~---~~i~i~~~sgvSGAGk~~~~~~-------e~~~N~~py~~~~~~~~~~E~~~il~~~~~~~~~~~~~~v 229 (350) T PRK08664 161 PLMDFG-I---ERVHVTTMQAISGAGYPGVPSM-------DILDNVIPYIGGEEEKIEKETLKILGKFEGGKIVPADFKI 229 (350) T ss_pred HHHHCC-C---CEEEEEECCCCCCCCCCCCCCH-------HHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCEE T ss_conf 999859-9---7599994443453661457424-------5654853556764321678999985522235444568608 Q ss_pred EEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC----------CCCCEEECCCCCCCCCCCCHHH---HC Q ss_conf 8875203433202789999863257754489988665422001----------4430560278788789864276---27 Q gi|254780294|r 199 MFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG----------QNIVSVVPLEESRKIKTIACEM---MS 265 (311) Q Consensus 199 ~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~~~~~~~~~~p~~~~---~~ 265 (311) .|+||++|+.|||+.|+++.+. .....+++++.|.++|.. ++|+++.+.++ +|++.. .. T Consensus 230 ~ftphlvP~~RGil~Tiyv~l~---~~~~~~~i~~~~~~~~~~~~~~~l~~~p~~~i~v~~~~~-----~P~~~~~~~~~ 301 (350) T PRK08664 230 SATCHRVPVIDGHTEAVFVTFK---EKVDPEEIIEALENFKGLPQELGLPTAPEKPIIVREEPD-----RPQPRLDRDAG 301 (350) T ss_pred EEEEEECCCCCCEEEEEEEEEC---CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCC-----CCCCEEEEECC T ss_conf 9998982530558999999969---999999999999866288632356667887489807898-----77521543158 Q ss_pred CCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHC Q ss_conf 99607999998089976999997222101368999999998723 Q gi|254780294|r 266 GNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLS 309 (311) Q Consensus 266 g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g 309 (311) +...|.||+.+++..+++.+|+++|||+||||||||||||||.. T Consensus 302 ~~~~v~vg~~~~~~~~~l~~~s~iDNL~KGAAGQAVQnmNlM~~ 345 (350) T PRK08664 302 NGMAVSVGRLREDGIFDIKFVVLGHNTVRGAAGASVLNAELLKK 345 (350) T ss_pred CCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 97169997788079982999999357567699999999999998 No 8 >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional Probab=100.00 E-value=0 Score=480.64 Aligned_cols=292 Identities=15% Similarity=0.185 Sum_probs=234.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE---EEEEEECCCCCCCCCC------------HHHHCCCCEEEECCCCHHHHHHH Q ss_conf 07999758867899999998629972---8999965300786006------------67747998999938983789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL---CLLSIPCEERHNLRYR------------EDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~---~l~~l~s~~~ag~~~~------------~~~~~~~Divf~a~p~~~s~~~~ 66 (311) +|||||||||||||+|+++|++||+| ++++++|++|+||++. ++.|+++|++|||+|+++|++|+ T Consensus 6 ~nVaIvGATG~VG~~li~lL~~h~~f~v~~v~~~aS~~saGk~v~~~~~~~~v~~~~~~~~~~~Divf~a~~~~~s~~~~ 85 (347) T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQFV 85 (347) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCEEECCCEEEEEECCHHHHHCCCEEEECCCHHHHHHHH T ss_conf 77999988039999999999727898751079986587799762689927899857844651697899768578899999 Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEE Q ss_conf 99861258489822763035554311002100047765204960772584211331124788888503455650267651 Q gi|254780294|r 67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAV 146 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~ 146 (311) |++.++| ++|||||++|||++++||++||||+++++. .+++||||||+||+++++|+||++.+++++ ++++++ T Consensus 86 ~~~~~~G--~~VID~Ssa~R~~~~vPlvvPEvN~~~l~~--~~~iIanPnC~tt~l~laL~PL~~~~~i~~---v~vst~ 158 (347) T PRK06728 86 NQAVSSG--AIVIDNTSEYRMAHDVPLVVPEVNAHTLKE--HKGIIAVPNCSALQMVTALQPIRKVFGLER---IIVSTY 158 (347) T ss_pred HHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHHC--CCCEEECCCHHHHHHHHHHHHHHHHHCCCE---EEEEEE T ss_conf 9998589--699989756568999745887529667623--278377898088899999999998537661---235665 Q ss_pred CCCCCCCCCCCHHCCCCCCCC----CCCCCCCCCC-----CCCCCCCCC-------------------CHHHHCC-CCEE Q ss_conf 233335610000001344432----2343322222-----344444342-------------------0133216-7113 Q gi|254780294|r 147 SGYTGGGKKLISRMEQKNMPD----TISSNHFFYS-----LDLLHKHLP-------------------EITQYSL-IKTS 197 (311) Q Consensus 147 sg~sgaG~~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~~~h~~-------------------e~~~~~~-~~~~ 197 (311) |++||+|+.+++++..+.... ....+..++. .+..++..| |..++.. ...+ T Consensus 159 QavSGaG~~gv~eL~~q~~~~l~g~~~~~~~~p~~~~~~~~piafNviP~i~~~~~~g~t~EE~k~~~E~~kIL~~~~l~ 238 (347) T PRK06728 159 QAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLK 238 (347) T ss_pred EECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 30022567789999999998746886654445655554467303320565575566895899988877777516788775 Q ss_pred EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEE Q ss_conf 68875203433202789999863257754489988665422001443056027878878986427627996079999980 Q gi|254780294|r 198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDS 277 (311) Q Consensus 198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~ 277 (311) +.+||+++|+.+||..++++.+ ....+.+++++.|.+ .+++.+. ++..+..||+|..+.|++.++|||+|. T Consensus 239 is~tcvRVPv~~GH~~sv~v~~---~~~~~~eei~~~l~~----~~~v~~~--d~p~~~~~p~p~~~~g~~~v~VGRiR~ 309 (347) T PRK06728 239 MAATCVRVPVISGHSESVYIEL---EKEATVAEIKEVLFD----APGVILQ--DNPSEQLYPMPLYAEGKIDTFVGRIRK 309 (347) T ss_pred EEEEEEEECCCCCEEEEEEEEE---CCCCCHHHHHHHHHH----CCCCEEC--CCCCCCCCCCCCCCCCCCCEEEEEEEE T ss_conf 0569999575052823689998---577999999999974----8998851--486546898872116998647764165 Q ss_pred C--CCCEEEEEEEECCCHHHHHHHHHHHHHHHHC Q ss_conf 8--9976999997222101368999999998723 Q gi|254780294|r 278 S--ELPYINIIAVFDNLGKGASGAAIQNMDLLLS 309 (311) Q Consensus 278 ~--~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g 309 (311) + ..+.+++|++.|||+||||||||||||||.. T Consensus 310 d~~~~~~l~~~~v~DNl~kGAA~~AVq~aE~l~~ 343 (347) T PRK06728 310 DPDTPNGFHLWIVSDNLLKGAAWNSVQIAETMVE 343 (347) T ss_pred CCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 5899996999999735689899999999999997 No 9 >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed Probab=100.00 E-value=0 Score=472.64 Aligned_cols=290 Identities=15% Similarity=0.117 Sum_probs=238.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 07999758867899999998629--972899996530078600------------6677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) +|||||||||||||+|+++|++| |++++++++|++|+||++ ++..|+++|++|||+|+++|++|++ T Consensus 5 ~~VaIvGATG~VG~~li~lL~~~~~p~~~l~~laS~~saGk~i~~~~~~l~v~~~~~~~~~~vDlvffa~~~~vs~~~a~ 84 (336) T PRK05671 5 LDIAVVGATGSVGEALVQVLEERDFPVGTLHLLASMESAGHSVPFAGKNLRVREVDSFDFSQVKLAFFAAGAAVSRSFAE 84 (336) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCHHHHHHHHH T ss_conf 87999998649999999998636998026999987656898754689678999788244245988998688166799899 Q ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC Q ss_conf 98612584898227630355543110021000477652049607725842113311247888885034556502676512 Q gi|254780294|r 68 LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVS 147 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~s 147 (311) ++.++| ++|||||++||++ ++||++||+|+++++.++++++|+||||+||+++++|+||++.+++++ ++++++| T Consensus 85 ~~~~aG--~~VID~Ss~fr~~-~vPlvvPEvN~~~l~~~~~~~iVanPnC~t~~l~laL~Pl~~~~~l~~---i~v~t~q 158 (336) T PRK05671 85 KALAAG--CSVIDLSGALPSA-QAPNVVPEANAERLASLAAPFLVSSPSASAVALAVALAPLKGLLDIQR---VQVTACL 158 (336) T ss_pred HHHHCC--CEEEECCCCCCCC-CCCEEECCCCHHHHHHCCCCCEEECCCCHHHHHHHCCHHHHHHHCCEE---EEEEEEE T ss_conf 999769--9799562013303-797774042999996075687786786066666630166898709438---9998640 Q ss_pred CCCCCCCCCCHHCCCCCC-------------CCCCCCCCCCCCCCCCC-CC-------CCCHHHHCC-CCEEEEEEEECC Q ss_conf 333356100000013444-------------32234332222234444-43-------420133216-711368875203 Q gi|254780294|r 148 GYTGGGKKLISRMEQKNM-------------PDTISSNHFFYSLDLLH-KH-------LPEITQYSL-IKTSPMFLPSVG 205 (311) Q Consensus 148 g~sgaG~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-~h-------~~e~~~~~~-~~~~~~~~~~~~ 205 (311) ++||+|+++.+++..+.. ......|..++...+.. .| ..|..++.. ...++.++|+++ T Consensus 159 avSGaG~~gv~~L~~qt~~lln~~~~~~~~~~~~iafNviP~ig~~~~~g~~~eE~k~~~e~~kil~~~~~~vs~t~vrV 238 (336) T PRK05671 159 AVSALGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDEQGHTALERRLVAELRQLLGLPELKVSVTCIQV 238 (336) T ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEEC T ss_conf 50107765689999999987268877765554010043343457556678769998777888776348887734688972 Q ss_pred CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHH-HHCCCCEEEEEEEEEC--CCCE Q ss_conf 433202789999863257754489988665422001443056027878878986427-6279960799999808--9976 Q gi|254780294|r 206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACE-MMSGNDKLHLFFFDSS--ELPY 282 (311) Q Consensus 206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~-~~~g~n~v~Vg~~~~~--~~~~ 282 (311) |+.+||..++++.+ ..+.+.+++.+.++. .+++.+.+.+ .+|+|. ++.|+|.|+|||+|.+ ..+. T Consensus 239 PV~~Ghs~sv~v~~---~~~~~~~~i~~~l~~----~~~v~~~~~~-----~~P~p~~d~~g~~~v~VGRiR~~~~~~~~ 306 (336) T PRK05671 239 PVFFGDSFSVTLQS---AEPVDLAAVNAALEA----ADGIELVEAG-----DYPTPVGDAVGQDVVYVGRVRAGVDDPRQ 306 (336) T ss_pred CEECCEEEEEEEEE---CCCCCHHHHHHHHHC----CCCCEEECCC-----CCCCCCCCCCCCCCEEEEEEECCCCCCCE T ss_conf 30311899999995---798869999999855----9997994889-----99885210279987689861525898997 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHC Q ss_conf 999997222101368999999998723 Q gi|254780294|r 283 INIIAVFDNLGKGASGAAIQNMDLLLS 309 (311) Q Consensus 283 ~~v~s~~DNL~KGAAgnAVQn~nlm~g 309 (311) +++|+++|||+||||||||||+|+|.. T Consensus 307 l~~~~v~DNl~kGAA~~AVq~AE~l~k 333 (336) T PRK05671 307 LNLWLTSDNVRKGAALNAVQVGELLIK 333 (336) T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHHHH T ss_conf 999999821788699999999999998 No 10 >PRK08040 putative semialdehyde dehydrogenase; Provisional Probab=100.00 E-value=0 Score=465.58 Aligned_cols=290 Identities=16% Similarity=0.127 Sum_probs=237.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCCCC------------CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 07999758867899999998629--972899996530078600------------6677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNLRY------------REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) +|||||||||+|||+|+++|++| |++++++++|++|+||++ ++..|.++|++|||+|.++|++|+| T Consensus 5 ~~VaivGATG~VGq~~l~lL~e~~fp~~~l~~laS~~SaGk~i~~~~~~~~v~~~~~~~~~~~di~ff~a~~~~s~~~~~ 84 (337) T PRK08040 5 WNIALLGATGAVGEALLETLAERQFPVGEIYALAREESAGETLRFGGKSITVQDAAEFDWTQAQLAFFVAGKEASAAYAE 84 (337) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEECCCEEEEEECCCCCCCCCCEEEECCCCHHHHHHHH T ss_conf 87999888508899999999717998135999988888997777899188999777033246988999177178888899 Q ss_pred HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEC Q ss_conf 98612584898227630355543110021000477652049607725842113311247888885034556502676512 Q gi|254780294|r 68 LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVS 147 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~s 147 (311) .+.++| +.||||||+|||+++|||++||||+++++..++++||+||||+|++++++|+||++.++++++. +.||| T Consensus 85 ~a~~aG--~~VIDnss~~Rm~~dVPLvvPeVN~~~l~~~~~~~IianPNCsT~~l~~aL~pL~~~~gi~rv~---vsTyQ 159 (337) T PRK08040 85 EATNAG--CLVIDSSGLFALEPDVPLVVPEVNPFVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIS---VTNLI 159 (337) T ss_pred HHHHCC--CEEEECCHHHCCCCCCCCCCCCCCHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHCCEEEEE---EEEEE T ss_conf 998489--5999796131058887421674087888743249825457708888898778888630645899---99864 Q ss_pred CCCCCCCCCCHHCCCCCC--------------CCCCCCCCCCCCCCCCCCCC-------CCHHHHC-CCCEEEEEEEECC Q ss_conf 333356100000013444--------------32234332222234444434-------2013321-6711368875203 Q gi|254780294|r 148 GYTGGGKKLISRMEQKNM--------------PDTISSNHFFYSLDLLHKHL-------PEITQYS-LIKTSPMFLPSVG 205 (311) Q Consensus 148 g~sgaG~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~h~-------~e~~~~~-~~~~~~~~~~~~~ 205 (311) ++||+|+++++++..+.. +..+..|..++... ..... .|..+++ ....++..||.++ T Consensus 160 AvSGaG~~gv~eL~~qt~~ll~g~~~~~~~~f~~qiafNviP~I~~-e~g~t~EE~K~~~EtrKIL~~~~i~VsaTcvRV 238 (337) T PRK08040 160 SASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPD-SEGSVREERRIVDEVRKILQDEGLMISASVVQS 238 (337) T ss_pred ECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEC T ss_conf 0410358899999999999854998876545775332565674478-787429899998875064678887641079974 Q ss_pred CCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHH-HHCCCCEEEEEEEEEC--CCCE Q ss_conf 433202789999863257754489988665422001443056027878878986427-6279960799999808--9976 Q gi|254780294|r 206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACE-MMSGNDKLHLFFFDSS--ELPY 282 (311) Q Consensus 206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~-~~~g~n~v~Vg~~~~~--~~~~ 282 (311) |+.+||..++++.+. .....+++.+.+... +.+.+.. +..||+|. ++.|++.++|||+|.+ ..+. T Consensus 239 PV~~GHs~sV~ve~~---~~~~~e~~~~~l~~~----~~v~~~d-----e~~~P~p~~da~g~~~v~VGRiR~d~~~~~~ 306 (337) T PRK08040 239 PVFYGHAQMVHFEAL---RPLAAEEARDAFAQG----EDIVLSE-----ENDYPTQVGDASGNPHLSIGCVRNDYGMPEQ 306 (337) T ss_pred CEECCEEEEEEEEEC---CCCCHHHHHHHHHCC----CCCEEEC-----CCCCCCCCHHCCCCCCEEEEEEECCCCCCCC T ss_conf 403117889999987---879999999998608----9979827-----9999874000379987698824766888892 Q ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHC Q ss_conf 999997222101368999999998723 Q gi|254780294|r 283 INIIAVFDNLGKGASGAAIQNMDLLLS 309 (311) Q Consensus 283 ~~v~s~~DNL~KGAAgnAVQn~nlm~g 309 (311) +++|++.||||||||+||||++|+|.. T Consensus 307 l~~w~v~DNlrkGAA~naVqiaE~Lv~ 333 (337) T PRK08040 307 LQFWSVADNVRFGGALMAVKIAEKLVQ 333 (337) T ss_pred EEEEEEECHHHHHHHHHHHHHHHHHHH T ss_conf 899999726888699999999999998 No 11 >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process. Probab=100.00 E-value=0 Score=446.71 Aligned_cols=289 Identities=19% Similarity=0.212 Sum_probs=239.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEE-ECCCCCCCCCCHH-------------------------H-----HCC Q ss_conf 079997588678999999986299-7289999-6530078600667-------------------------7-----479 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSI-PCEERHNLRYRED-------------------------L-----LNA 49 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l-~s~~~ag~~~~~~-------------------------~-----~~~ 49 (311) .|||+|||||+|||.|++||++|| ||+|..+ ||++|+||+|.|. . -++ T Consensus 1 ~~VavLGaTG~VGq~f~~lL~~HPr~Fe~~~v~AS~~saGk~Yge~~~W~~~~~g~~Pe~~~dl~i~~~~p~ri~~d~~d 80 (358) T TIGR00978 1 VRVAVLGATGLVGQKFVKLLEKHPRYFELAKVVASERSAGKRYGEVVKWREILSGDIPEEVRDLEIVETEPVRIAEDHKD 80 (358) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCHHHHHHHCCCCCCCCCHHHCCCEEECCCCCEEEECCCC T ss_conf 96899706554689999997526981228898836865576744543012123685843234765413474335661798 Q ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCC--------EEEECCCCCCCC Q ss_conf 989999389837899999986125848982276303555431100210004776520496--------077258421133 Q gi|254780294|r 50 ADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSA--------RYITNPGCYATG 121 (311) Q Consensus 50 ~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~--------~iIanPnC~~t~ 121 (311) +|+||+|||+++|++.+++++++| ..|++|||+|||||||||++||||++|++.++.| .||+||||+|+. T Consensus 81 VD~vfSALp~~~A~~~E~~la~~G--~~VfSNAs~~RmdpdVPli~PEVN~~hL~l~~~Q~~RrgW~G~ivtNPNC~t~~ 158 (358) T TIGR00978 81 VDIVFSALPSEVAEEVEPKLAEEG--IIVFSNASAHRMDPDVPLIVPEVNSDHLELLKVQKERRGWKGFIVTNPNCTTAG 158 (358) T ss_pred CEEEEECCCHHHHHHHHHHHHHCC--CEEEECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCCCEEEECCHHHHHH T ss_conf 269981499799999999998569--889876847788888677833356147999985400168861799576167887 Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHC-CC------ Q ss_conf 11247888885034556502676512333356100000013444322343322222344444342013321-67------ Q gi|254780294|r 122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYS-LI------ 194 (311) Q Consensus 122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~-~~------ 194 (311) +.|+|+||.+.+.++++.++|+||+ ||||+.|...++ +..|..||..+++.+...|..+++ +. T Consensus 159 lTl~LkPl~d~~~~~~V~v~TmQAv---SGAGY~GVp~~~-------I~dN~iP~I~GEE~KIe~E~~KilsGkl~~g~~ 228 (358) T TIGR00978 159 LTLALKPLIDAFGIKKVIVTTMQAV---SGAGYPGVPSMD-------ILDNVIPHIGGEEEKIERETLKILSGKLENGKI 228 (358) T ss_pred HHHHHHHHHHCCCCCEEEEEEECCH---HCCCCCCCCHHH-------HHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEE T ss_conf 7610134643058456999872000---148888875455-------533616550633589876213333440038846 Q ss_pred ---CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC----------CCCCEEECCCCCCCCCCCCH Q ss_conf ---11368875203433202789999863257754489988665422001----------44305602787887898642 Q gi|254780294|r 195 ---KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG----------QNIVSVVPLEESRKIKTIAC 261 (311) Q Consensus 195 ---~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~----------~~~v~v~~~~~~~~~~~p~~ 261 (311) ...+..+++|+|+..||+.+|++. +....+.+|+...|++|... ++-+.+...+|.||++ . T Consensus 229 ~PA~~~~~at~~RVPV~~GHt~~v~v~---~~~~~d~~EI~~~~~~f~~~Pq~l~lP~~P~~p~~~~d~edrPQPr---l 302 (358) T TIGR00978 229 EPAEFEVSATTTRVPVLDGHTESVHVE---FDKKFDIEEIREALKSFRGLPQKLGLPSAPEKPIIVRDEEDRPQPR---L 302 (358) T ss_pred EEECCEEEEEEEECCCCCCCEEEEEEE---ECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCH---H T ss_conf 420440689987444111646999998---6687798999999984067764257798869537987588678504---4 Q ss_pred HHH------CCCCEEEEEEEEECCC--CEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 762------7996079999980899--7699999722210136899999999872 Q gi|254780294|r 262 EMM------SGNDKLHLFFFDSSEL--PYINIIAVFDNLGKGASGAAIQNMDLLL 308 (311) Q Consensus 262 ~~~------~g~n~v~Vg~~~~~~~--~~~~v~s~~DNL~KGAAgnAVQn~nlm~ 308 (311) +.. .+-..|.|||+|.+.. +.+.++..+|||+|||||.++.|||||+ T Consensus 303 D~~nGGsa~~~GM~V~vGRlr~~~~f~~~l~~VVLghNLVRGAAG~~lLnaEl~~ 357 (358) T TIGR00978 303 DRDNGGSAAGKGMAVTVGRLREDSGFRGSLKYVVLGHNLVRGAAGATLLNAELAY 357 (358) T ss_pred HHCCCCCCCCCCCEEEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHH T ss_conf 2025862126896789753643435555113799723312588899999999860 No 12 >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] Probab=100.00 E-value=0 Score=441.34 Aligned_cols=294 Identities=17% Similarity=0.157 Sum_probs=237.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHC-CCCEE-EEEEECCCCCCCCCC---------------HHHHCCCCEEEECCCCHHHH Q ss_conf 90799975886789999999862-99728-999965300786006---------------67747998999938983789 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQ-RKDLC-LLSIPCEERHNLRYR---------------EDLLNAADVSILCLPDVASL 63 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~-hp~~~-l~~l~s~~~ag~~~~---------------~~~~~~~Divf~a~p~~~s~ 63 (311) |+||||+||||+||++|+++|++ ||+++ +..++|.+|+|+++- ...++++|++|||+|.++|+ T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334) T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334) T ss_pred CCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHH T ss_conf 91899994235589999999875399840578885231157716010675035762113410012499999917668789 Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCE-EEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE Q ss_conf 99999861258489822763035554311002100047765204960-77258421133112478888850345565026 Q gi|254780294|r 64 EIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSAR-YITNPGCYATGAIAILRPLRKAKLLPDRYPIT 142 (311) Q Consensus 64 ~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~-iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~ 142 (311) +|+|+++++| +.||||||+|||++||||+|||||++++...++.+ ||+||||+|++++++|+||++.++++++. T Consensus 81 ~~~p~~~~~G--~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~--- 155 (334) T COG0136 81 EVEPKAAEAG--CVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVV--- 155 (334) T ss_pred HHHHHHHHCC--CEEEECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCEEEE--- T ss_conf 9999999769--88996873111589987765886989997454179789889718999999889887513810899--- Q ss_pred EEEECCCCCCCCCCCHHCCCCCC----C-------CCCCCCCCCCCCCC--------CCCCCCCHHHHCC-CCEEEEEEE Q ss_conf 76512333356100000013444----3-------22343322222344--------4443420133216-711368875 Q gi|254780294|r 143 INAVSGYTGGGKKLISRMEQKNM----P-------DTISSNHFFYSLDL--------LHKHLPEITQYSL-IKTSPMFLP 202 (311) Q Consensus 143 ~~~~sg~sgaG~~~~~~~~~~~~----~-------~~~~~~~~~~~~~~--------~~~h~~e~~~~~~-~~~~~~~~~ 202 (311) +.|||++||+|++++.++-.+.. . .....|..++...+ +-+...|..++.+ ...++..+| T Consensus 156 VsTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsatc 235 (334) T COG0136 156 VSTYQAVSGAGAEGGVELAGQTDALLNGIPILPIGYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSATC 235 (334) T ss_pred EEEEEHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEE T ss_conf 99750112268101566898874313676556656643331013577645577518999988999987188988257899 Q ss_pred ECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEEC--CC Q ss_conf 2034332027899998632577544899886654220014430560278788789864276279960799999808--99 Q gi|254780294|r 203 SVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSS--EL 280 (311) Q Consensus 203 ~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~--~~ 280 (311) +++|+.+||...+++.+. .....+++.+.+ ....+.+.+.+.++ ..+.+|.+..|++.++|||+|.+ .. T Consensus 236 vRVPV~~GHse~v~ve~~---~~~~~~e~~~~~---l~~ap~v~v~~~~~---~~P~~~~d~~g~~~v~VGRiR~d~~~~ 306 (334) T COG0136 236 VRVPVFYGHSEAVTVEFK---KDVDPEEIREEL---LPSAPGVVVVDNPE---DRPQTPLDATGGDEVSVGRIRKDLSGP 306 (334) T ss_pred EECCEECCCCEEEEEEEC---CCCCHHHHHHHH---HCCCCCCEEEECCC---CCCCCHHHHCCCCCEEEEEEEECCCCC T ss_conf 972416152067899856---989989999997---53189968986776---686583663489855776766347888 Q ss_pred CEEEEEEEECCCHHHHHHHHHHHHHHHH Q ss_conf 7699999722210136899999999872 Q gi|254780294|r 281 PYINIIAVFDNLGKGASGAAIQNMDLLL 308 (311) Q Consensus 281 ~~~~v~s~~DNL~KGAAgnAVQn~nlm~ 308 (311) +.+.+|+++||||||||+|+||+||+.+ T Consensus 307 ~~l~~~~v~dNl~~GAA~~av~iaE~L~ 334 (334) T COG0136 307 EGLKLWVVGDNLRKGAALNAVLIAELLL 334 (334) T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHHC T ss_conf 7479999860113511889999988659 No 13 >PRK06901 aspartate-semialdehyde dehydrogenase; Provisional Probab=100.00 E-value=0 Score=437.80 Aligned_cols=288 Identities=12% Similarity=0.086 Sum_probs=221.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCC-CCCCCC------------CHHHHCCCCEEEECCCCHHHHHH Q ss_conf 907999758867899999998629--972899996530-078600------------66774799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEE-RHNLRY------------REDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~-~ag~~~------------~~~~~~~~Divf~a~p~~~s~~~ 65 (311) ++|||| ||||.||++|+++|++| |.-+|++|+|++ ++|+++ .+..|.++|++|| ++.++|++| T Consensus 4 ~~niAI-GATGaVG~~~l~iLeer~fPv~~L~llas~~~s~~~~i~f~g~~v~~~~~~~f~~~~vdi~ff-Ag~~~s~~~ 81 (323) T PRK06901 4 TLNIAI-AAEFELSEKIVEALEESDLEISSISIVEIEPFGEEQGIRFNNKAVEQIAPDEVEWADFNYVFF-AGKLEQVEH 81 (323) T ss_pred CCCEEE-ECCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCEEEEEECHHHCCCCCCCEEEE-CCCHHHHHH T ss_conf 641899-766689999999999759994608777632667885799899899995121356324889998-582899999 Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEE Q ss_conf 99986125848982276303555431100210004776520496077258421133112478888850345565026765 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINA 145 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~ 145 (311) +|.+.++| |+||||||+||||+++||+|||||++.++.+++.+|||||||+|++++++|+|||+.++|++ ++++| T Consensus 82 ~p~A~~aG--~vVIDnSSafRmd~dvPLVVPEVN~~~l~~~~~~~IIANPNCsTiqlvvaL~PLh~~~~ikr---vvvsT 156 (323) T PRK06901 82 LAQAAEAG--CIVIDMLGICAALANVPVVVPSVNDEQLAELRQRNIVSLPDPQVSQLALALAPFLQEQPLNQ---IFVTS 156 (323) T ss_pred HHHHHHCC--CEEEECCHHHHCCCCCCEECCCCCHHHHHCCHHCCEEECCCHHHHHHHHHHHHHHHHHCCCE---EEEEE T ss_conf 99999889--89998975651789986480674999985131179888998289999998899999719778---99986 Q ss_pred ECCCCCCCCCCCHHCCCCCCCCC-----------CCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 12333356100000013444322-----------3433222223444443420133216711368875203433202789 Q gi|254780294|r 146 VSGYTGGGKKLISRMEQKNMPDT-----------ISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQ 214 (311) Q Consensus 146 ~sg~sgaG~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~ 214 (311) ||++||+|+++++++..+..... +..|..+. ..-+...|..++......+..|+.++|+++||... T Consensus 157 YQaVSGaG~~gv~EL~~Qt~~~lng~~~~~~~~qiAFN~iP~---ee~k~~~Et~KIl~~~~~vsaT~VRVPV~~gHSes 233 (323) T PRK06901 157 LLPASYTDAETVKKLAGQTARLLNGIPLDEEEQRLAFDVFPA---QAQNLELQLQKIFPQLENATFHSIQVPVFYGLAQM 233 (323) T ss_pred EHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCC---CCCCCHHHHHHHCCCCCCCEEEEEEEEEEEEEEEE T ss_conf 200455418899999999999736999987887433556583---01034188887217876630101882034238899 Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEEC--CCCEEEEEEEECCC Q ss_conf 9998632577544899886654220014430560278788789864276279960799999808--99769999972221 Q gi|254780294|r 215 ISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSS--ELPYINIIAVFDNL 292 (311) Q Consensus 215 v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~--~~~~~~v~s~~DNL 292 (311) |++.+.. +.+.++++..+.. .+.+.+. ++....+.+......+.+.+.+ |+|.+ ..+.+.+|++.||| T Consensus 234 V~ve~~~---~~~~~~~~~~l~~----~~gv~~~--~~~~~~p~~~~~~~~~~~~~~~-rir~d~~~~ngl~lWvvaDNl 303 (323) T PRK06901 234 VTALSDY---DLDIESILAEWQQ----NNLLRYH--EEKLITPVLNGENENGEESVKL-HISQLSAVENGVQFWSVADEQ 303 (323) T ss_pred EEEEECC---CCCHHHHHHHHCC----CCCEEEC--CCCCCCCCCCCCCCCCCCEEEE-ECCCCCCCCCEEEEEEEECCH T ss_conf 9999789---8999999998606----9985874--6888888465001688555999-834789989979999977017 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 0136899999999872 Q gi|254780294|r 293 GKGASGAAIQNMDLLL 308 (311) Q Consensus 293 ~KGAAgnAVQn~nlm~ 308 (311) |||||+||||++|++. T Consensus 304 RKGAAlNAVQIAE~Li 319 (323) T PRK06901 304 RFNLAFLAVKLLELIY 319 (323) T ss_pred HHHHHHHHHHHHHHHH T ss_conf 7889999999999999 No 14 >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase; InterPro: IPR010136 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry represents bacterial N-acetyl-gamma-glutamyl-phosphate reductases, an enzyme catalysing the third step of arginine biosynthesis from glutamate.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm. Probab=100.00 E-value=0 Score=433.35 Aligned_cols=307 Identities=46% Similarity=0.816 Sum_probs=293.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) .||-|=|--|.+|.++.+.|.+|.++||..++..+++.-.=+-+.++-+|++|+|||+..|+|-+....... +++||. T Consensus 2 pKvFiDGeaGTTGLqi~~rL~~R~DleLlsI~~~rRKDa~~RA~lLNaaDvaiLCLPDdAarEAVSLv~np~--~~ilDA 79 (314) T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDLELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAAREAVSLVDNPN--TKILDA 79 (314) T ss_pred CCEEECCCCCCHHHHHHHHHCCCCCHHEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHCEECCCCCC--CEEEEC T ss_conf 953641788862678988624776200031063326797998877546732333486245543000026877--247515 Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCC Q ss_conf 63035554311002100047765204960772584211331124788888503455650267651233335610000001 Q gi|254780294|r 82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRME 161 (311) Q Consensus 82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~ 161 (311) |.|||-.+||.|+.||++++|+|+|++++.|||||||+|+.++.+.||..++.+-...+|+++++|||||+||++++..+ T Consensus 80 STAyRt~~dW~YGfpEL~~eQREki~~sk~vanPGCY~tg~~aL~rPLv~~GilPA~fPv~~~a~sGYsGGGk~li~~y~ 159 (314) T TIGR01851 80 STAYRTADDWVYGFPELAPEQREKIRNSKRVANPGCYPTGFIALLRPLVEAGILPADFPVTINAVSGYSGGGKALIAKYE 159 (314) T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCHHHHHHHHHH T ss_conf 40000487741146457877524676055411898517899999743876577765576345563154431589999886 Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf ---34443223433222223444443420133216711368875203433202789999863257754489988665422 Q gi|254780294|r 162 ---QKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY 238 (311) Q Consensus 162 ---~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 238 (311) ++.-.......+..|...+.|+|.||+.++.+...++.|||....+.+||.++|.++...+.+.++.+++.+.+.++ T Consensus 160 sfh~~~a~~~~~~~f~~YgL~L~HKHlpEm~~~sgL~~~PiFtP~VG~f~qGm~V~iPLHL~~L~~~vS~~~ih~al~~y 239 (314) T TIGR01851 160 SFHEESADNSKKQPFIIYGLALEHKHLPEMRVHSGLALPPIFTPAVGNFAQGMLVTIPLHLATLDSKVSAADIHAALAEY 239 (314) T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCEEECCCCHHHHCCCCCHHHHHHHHHHH T ss_conf 45554125533578732111123774533320365568880125657300660676388557627898989999999997 Q ss_pred HCCCCCCEEECCCCCCCC---CCCCHHHHCCCCEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf 001443056027878878---986427627996079999980899769999972221013689999999987238 Q gi|254780294|r 239 YMGQNIVSVVPLEESRKI---KTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 239 ~~~~~~v~v~~~~~~~~~---~~p~~~~~~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) |++++||+|-+.++.+.. .+.+|+.+.|||++.+.|+-.+++.+..+++.+|||-|||||.||||||||||. T Consensus 240 Y~Ge~Fv~Va~~~~~~~L~~G~~LD~~g~NgTN~~~lFVFG~d~g~~a~l~ArLDNLGKGAsGAAVQnLn~~LGl 314 (314) T TIGR01851 240 YQGEQFVKVAPLDDAETLDDGTFLDPQGLNGTNRLELFVFGSDDGERALLVARLDNLGKGASGAAVQNLNIMLGL 314 (314) T ss_pred HCCCCEEEEECCCCCHHHCCCCEECCCCCCCCCEEEEEEECCCCCCCEEEEEEHHCCCCCHHHHHHHHHHHHHCC T ss_conf 177743886124470000168511602378841477887158773304524221025640257999876765069 No 15 >KOG4354 consensus Probab=100.00 E-value=0 Score=389.93 Aligned_cols=286 Identities=32% Similarity=0.474 Sum_probs=252.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH-------------------HHHCCCCEEEECCCCHHH Q ss_conf 0799975886789999999862997289999653007860066-------------------774799899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE-------------------DLLNAADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~-------------------~~~~~~Divf~a~p~~~s 62 (311) .||+.+||+||+|.+|++|+.+||++|+.+++|++.+|+++.. +...-+|.+.|++|.++. T Consensus 20 ~rv~LlGArGYTGknlv~Lin~HPylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaLPn~vc 99 (340) T KOG4354 20 IRVGLLGARGYTGKNLVRLINNHPYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMALPNQVC 99 (340) T ss_pred CEEEEEECCCCCHHHHHHHHCCCCCEEEEEEEHHHHCCCCCCCCCHHHEEECCCCHHHHHHHHCCCCEEEEEEECCHHHH T ss_conf 25998733665416699886389736888632254347715674322123234424667876257764556652541567 Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHH--HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 999999861258489822763035554--311002100047765204960772584211331124788888503455650 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAHRIAP--GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYP 140 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~R~~~--~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~ 140 (311) +.|+.....+..+.++||.|.+||..| +|.|++||+| .++.+++++.|||||||+|.++++|-||++....+. T Consensus 100 kpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpEln--dRe~i~na~~iaNPGCYaTgsQl~l~Pllk~i~g~p--- 174 (340) T KOG4354 100 KPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELN--DREDIKNARLIANPGCYATGSQLPLVPLLKAILGKP--- 174 (340) T ss_pred HHHHHHHHHCCCCEEEEECCHHHCCCCCHHEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCC--- T ss_conf 888888762377146631103334775402010671004--388875404026997324567256447788755886--- Q ss_pred EEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEE Q ss_conf 26765123333561000000134443223433222223444443420133216711368875203433202789999863 Q gi|254780294|r 141 ITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDME 220 (311) Q Consensus 141 ~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~ 220 (311) .+.++||+||||.++....+ .....+|..+|... .|+|.+||.+. ...++.|+||..++++||..||+++ T Consensus 175 -~ifgvSGySGAGtkpspkNd----~~~l~nnlipY~lt-dHiHerEIs~r--~k~~VaF~PHv~qwfqGi~lTi~vp-- 244 (340) T KOG4354 175 -EIFGVSGYSGAGTKPSPKND----YSELANNLIPYGLT-DHIHEREISQR--SKVTVAFTPHVMQWFQGIQLTIYVP-- 244 (340) T ss_pred -CEEEECCCCCCCCCCCCCCC----HHHHHCCCCCCCCC-CCCHHHHHHHH--HCCCEEECHHHHHHHHHCEEEEEEE-- T ss_conf -13431255678889897557----88886377653122-22104767886--3885553444788751114899984-- Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEEEEEEECC-CCEEEEEEEECCCHHHHHHH Q ss_conf 25775448998866542200144305602787887898642762799607999998089-97699999722210136899 Q gi|254780294|r 221 RLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSE-LPYINIIAVFDNLGKGASGA 299 (311) Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~Vg~~~~~~-~~~~~v~s~~DNL~KGAAgn 299 (311) ..+.+..+|+++.|..+|.+++||.|+. + .|..++++|++.|++|.+.+.. +.+.++++.||||+|||||| T Consensus 245 -mkksv~~~elr~lyk~~YedE~lvhV~d--d-----vPlvkdv~gsh~v~~ggF~~~~~g~Ravii~tIDNLlKGAatQ 316 (340) T KOG4354 245 -MKKSVRTEELRQLYKTSYEDEELVHVLD--D-----VPLVKDVRGSHYVHMGGFPDRIPGDRAVIISTIDNLLKGAATQ 316 (340) T ss_pred -ECCCCCHHHHHHHHHHHCCCCCEEEEEC--C-----CCCEECCCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHHHHHH T ss_conf -0676568999999874306750046414--6-----6530015776326863565788885289998666565347888 Q ss_pred HHHHHHHHHCC Q ss_conf 99999987238 Q gi|254780294|r 300 AIQNMDLLLSS 310 (311) Q Consensus 300 AVQn~nlm~g~ 310 (311) |+||+|||+|- T Consensus 317 aLQNlNl~~GY 327 (340) T KOG4354 317 ALQNLNLMLGY 327 (340) T ss_pred HHHHHHHHHCC T ss_conf 98754434078 No 16 >KOG4777 consensus Probab=100.00 E-value=0 Score=318.80 Aligned_cols=298 Identities=17% Similarity=0.157 Sum_probs=216.3 Q ss_pred CEEE-EECCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCC------------------------HHHHCCCCEEEE Q ss_conf 0799-975886789999999862997289999-65300786006------------------------677479989999 Q gi|254780294|r 2 YKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSI-PCEERHNLRYR------------------------EDLLNAADVSIL 55 (311) Q Consensus 2 ~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l-~s~~~ag~~~~------------------------~~~~~~~Divf~ 55 (311) .|+| |+||||.|||+|+.+|++||+|+|..| +|++||||+|. .+.|++||++|| T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIvfs 83 (361) T KOG4777 4 KKSAPVLGATGAVGQRFISLLSDHPYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIVFS 83 (361) T ss_pred CCCCCEEECCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEECCCCHHCCCCCCHHHHHHHHHCCHHHCCCCCEEEE T ss_conf 31355210343147789998616985134230133314698157604411202465034341375558402366558985 Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCC---------CEEEECCCCCCCCCHHHH Q ss_conf 38983789999998612584898227630355543110021000477652049---------607725842113311247 Q gi|254780294|r 56 CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRS---------ARYITNPGCYATGAIAIL 126 (311) Q Consensus 56 a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~---------~~iIanPnC~~t~~~laL 126 (311) .++.+.+.++.+.+.|+| ..++||++.|||+++|||+|||||++|++.++- ..||+||||+|...+++| T Consensus 84 gldad~ageiek~f~eag--~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl 161 (361) T KOG4777 84 GLDADIAGEIEKLFAEAG--TIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL 161 (361) T ss_pred CCCCHHHHHHHHHHHHCC--EEEEECCHHCCCCCCCCEEECCCCHHHHHHHEECCCCCCCCCCEEEECCCCCEEEEEEEC T ss_conf 278236656547788668--699867143025799745733458778425302222588899528966988703687665 Q ss_pred HHHHHHC-CCCCCCCEEEEEECCCCC-CCCCCCHHCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHH-CCCCEEEEEEE Q ss_conf 8888850-345565026765123333-5610000001344432234332222234-444434201332-16711368875 Q gi|254780294|r 127 RPLRKAK-LLPDRYPITINAVSGYTG-GGKKLISRMEQKNMPDTISSNHFFYSLD-LLHKHLPEITQY-SLIKTSPMFLP 202 (311) Q Consensus 127 ~PL~~~~-~i~~~~~~~~~~~sg~sg-aG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~e~~~~-~~~~~~~~~~~ 202 (311) +||+.++ .+++.+++++|+.||++. +|....+.+++-.+.....++.+.+... ....|...+... ..+.......+ T Consensus 162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqc 241 (361) T KOG4777 162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQC 241 (361) T ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC T ss_conf 46776315445532344556315786777327788874347889620045678887653047752145425777654212 Q ss_pred ECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH----------HCCCCCCEEECCCCCCCCCCCCHHHHCCCCE--- Q ss_conf 203433202789999863257754489988665422----------0014430560278788789864276279960--- Q gi|254780294|r 203 SVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY----------YMGQNIVSVVPLEESRKIKTIACEMMSGNDK--- 269 (311) Q Consensus 203 ~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~----------~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~--- 269 (311) .++++..||..++.+.+.....+. .++....+.++ .+.++.+.|+ ++.. +..|+|...++.+. T Consensus 242 nRv~v~Dgh~~cis~~f~~~~~pa-~~qv~~~l~eyv~d~~klgc~sapkq~iyv~--dd~a-pdrPqPrldrN~d~gy~ 317 (361) T KOG4777 242 NRVIVNDGHVKCISTCFRVPVMPA-HAQVVNLLFEYVLDENKLGCISAPKQGIYVI--DDRA-PDRPQPRLDRNKDDGYG 317 (361) T ss_pred CEEEEECCCEEEEEEEEECCCCCC-HHHHHHHHHHCCCCHHHCCCCCCCCCEEEEE--CCCC-CCCCCCCCCCCCCCCCE T ss_conf 346675670689988860688886-8999999986468743322302778747994--4788-99998641346677740 Q ss_pred EEEEEEEECCCCE-----EEEEEEECCCHHHHHHHHHHHHH Q ss_conf 7999998089976-----99999722210136899999999 Q gi|254780294|r 270 LHLFFFDSSELPY-----INIIAVFDNLGKGASGAAIQNMD 305 (311) Q Consensus 270 v~Vg~~~~~~~~~-----~~v~s~~DNL~KGAAgnAVQn~n 305 (311) |.|||+|.+.... +....++|..+|||+.++||.++ T Consensus 318 VsVGRIR~D~~~D~kfv~L~hnt~~gaag~G~l~aev~ia~ 358 (361) T KOG4777 318 VSVGRIRRDVSQDGKFVVLDHNTCGGAAGKGALLAEVQIAE 358 (361) T ss_pred EEEEEEECCCCCCCCEEEEEEEEEHHHHCCHHHHHHHHHHH T ss_conf 56566521533465269997502210121115788999886 No 17 >pfam01118 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase Probab=99.96 E-value=1.4e-29 Score=202.36 Aligned_cols=101 Identities=23% Similarity=0.361 Sum_probs=91.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC------------------HHHHCCCCEEEECCCCHHHH Q ss_conf 7999758867899999998629972899996-5300786006------------------67747998999938983789 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR------------------EDLLNAADVSILCLPDVASL 63 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~------------------~~~~~~~Divf~a~p~~~s~ 63 (311) ||||+|||||||+||+++|.+||++++..+. |++++|+++. ++.++++|++|+|+|+++|+ T Consensus 1 kvaIiGatGyvG~eLirlL~~hp~~~i~~l~~s~~saG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~ 80 (121) T pfam01118 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVDPEDLKDVDIVFFALPAGVSK 80 (121) T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHCCCCCCCCCCEEEECCHHHHCCCCEEEECCCHHHHH T ss_conf 99998936199999999997188755137885056589601441654246666447758977853898999838768999 Q ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 999998612584898227630355543110021000477652 Q gi|254780294|r 64 EIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEK 105 (311) Q Consensus 64 ~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~ 105 (311) ++++++.++| ++|||+|++|||++++||++||+|+++++. T Consensus 81 ~~~~~~~~~g--~~VIDlS~dfRl~~~~~y~lpEiN~~~i~~ 120 (121) T pfam01118 81 ELAPKLLEAG--AVVIDLSSAFRMDDDVPYVLPEVNREAIKK 120 (121) T ss_pred HHHHHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHHC T ss_conf 9999987159--899878567517899857999869999844 No 18 >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. Probab=99.96 E-value=1.6e-29 Score=201.93 Aligned_cols=100 Identities=26% Similarity=0.377 Sum_probs=87.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCH-----------------HHHCCCCEEEECCCCHHHHH Q ss_conf 799975886789999999862997289999-653007860066-----------------77479989999389837899 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-PCEERHNLRYRE-----------------DLLNAADVSILCLPDVASLE 64 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~s~~~ag~~~~~-----------------~~~~~~Divf~a~p~~~s~~ 64 (311) ||||||||||||+||+++|.+||++++..+ +|++++|+++.+ ..+.++|++|||+|+++|++ T Consensus 1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s~~ 80 (122) T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHHHH T ss_conf 98998945199999999998589974577774046589757885966457735056533110017999999388278899 Q ss_pred HHH---HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHH Q ss_conf 999---9861258489822763035554311002100047765 Q gi|254780294|r 65 IIQ---LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKE 104 (311) Q Consensus 65 ~~~---~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~ 104 (311) +++ ++.++| ++|||+|++|||++++||++||||+++++ T Consensus 81 ~~~~~~~~~~~g--~~VIDlSadfRl~~~~~~~lPEvN~~~i~ 121 (122) T smart00859 81 IAPLLPKAAEAG--VKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122) T ss_pred HHHHHHHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHC T ss_conf 999889887569--87986847752789986699871988954 No 19 >pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase Probab=99.92 E-value=1.3e-24 Score=171.60 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=115.6 Q ss_pred HHHHHHHC-CCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC---------- Q ss_conf 78888850-3455650267651233335610000001344432234332222234444434201332167---------- Q gi|254780294|r 126 LRPLRKAK-LLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---------- 194 (311) Q Consensus 126 L~PL~~~~-~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---------- 194 (311) |+||++++ ++++ ++++++||+||||+++.... .+....+|..+|...+.|+|.||+++.... T Consensus 1 L~PL~~~~~~i~~---Iiv~t~qgvSGAG~~~~~~~----~~~~i~~N~~py~~~~~h~h~~Ei~eel~~~~e~~~~l~~ 73 (167) T pfam02774 1 LKPLRDALGGLER---VIVDTYQAVSGAGKKAKPGV----FGAPIADNLIPYIDGEEHNGTPETREELKMVNETKKILGF 73 (167) T ss_pred CCCHHHHHCCCCE---EEEEECCCCCCCCCCCCCCC----CCHHHHCCEEEECCCHHHCCCHHHHHHHHHHCCCCEEECC T ss_conf 9204464489979---99992110250678878678----6534328889425740304830688887774178367438 Q ss_pred CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCC-CCEEEEE Q ss_conf 113688752034332027899998632577544899886654220014430560278788789864276279-9607999 Q gi|254780294|r 195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSG-NDKLHLF 273 (311) Q Consensus 195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g-~n~v~Vg 273 (311) ...+.+||+++|+.|||+.++++.+. .+....+++++.++.. ..+|+.+.+. ..+|+|..++| +|.|+|| T Consensus 74 ~~~v~~T~~rVPv~rGh~~ti~v~~~--~~~~~~~~~~~~~~~~--~~~~v~v~~~-----~~~P~~~~v~g~tn~v~VG 144 (167) T pfam02774 74 TPKVSATCVRVPVFRGHSETVTVKLK--LKPIDVEEVYEAFYAA--PGVFVVVRPE-----EDYPTPRAVRGGTNFVYVG 144 (167) T ss_pred CCCCCCEEEECCEEEEEEEEEEEEEC--CCCHHHHHHHHHHHHC--CCCEEEECCC-----CCCCCCHHHHCCCCCEEEE T ss_conf 98633258981408468999999954--8816599999999738--9988998998-----7887449991798858999 Q ss_pred EEEE-CC-CCEEEEEEEECCCHH Q ss_conf 9980-89-976999997222101 Q gi|254780294|r 274 FFDS-SE-LPYINIIAVFDNLGK 294 (311) Q Consensus 274 ~~~~-~~-~~~~~v~s~~DNL~K 294 (311) |+|. .. ++.+++|+++|||+| T Consensus 145 rir~d~~~~~~l~~~sviDNL~K 167 (167) T pfam02774 145 RVRKDPDGDRGLKLVSVIDNLRK 167 (167) T ss_pred EEEECCCCCCEEEEEEEECCCCC T ss_conf 98886899899999999725529 No 20 >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase; InterPro: IPR011534 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents aspartate-semialdehyde dehydrogenase from a variety of bacterial species.; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0050661 NADP binding, 0009089 lysine biosynthetic process via diaminopimelate. Probab=99.78 E-value=1.8e-19 Score=139.68 Aligned_cols=295 Identities=17% Similarity=0.164 Sum_probs=210.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEE-E-EEECCCCCCCC---------------CCHHHHCCCCEEEECCCCHHHHH Q ss_conf 0799975886789999999862997289-9-99653007860---------------06677479989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCL-L-SIPCEERHNLR---------------YREDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l-~-~l~s~~~ag~~---------------~~~~~~~~~Divf~a~p~~~s~~ 64 (311) .+|++||+.|+||..|++.+.+..+|+. . .+.|.+..|++ ++-+.++.+|+++.|.+.+.+.+ T Consensus 1 ~~vGl~GWrGmvGsvl~~rm~ee~df~~i~~vffsts~~G~~~P~~~~~~~~~l~~a~~~~~lk~~d~i~tCqGG~yt~e 80 (367) T TIGR01745 1 KKVGLVGWRGMVGSVLLQRMQEEKDFDAIKPVFFSTSQLGQKAPSFAKTSANILEDAYDIDALKELDIIITCQGGDYTKE 80 (367) T ss_pred CCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHH T ss_conf 91134532036899999986523334444454220133155465300001567765655787742576787158740356 Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCC--CCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE Q ss_conf 9999861258489822763035554311002100047765204--96077258421133112478888850345565026 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIR--SARYITNPGCYATGAIAILRPLRKAKLLPDRYPIT 142 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~--~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~ 142 (311) .-|++++.||...+||.+|..||.+|...++..+|.+..+..- +.+-.-.-||+..-++|.+.-|....++.= +. T Consensus 81 iyP~lr~~GW~GyWidaas~lrm~~d~~i~ldPvn~~~i~d~~~~G~~~f~GGnCt~s~~lm~~GGlf~~~lv~W---~~ 157 (367) T TIGR01745 81 IYPKLRKAGWKGYWIDAASSLRMKDDAVIILDPVNLDVIKDAVNKGIRTFVGGNCTVSLLLMSLGGLFRDELVEW---VS 157 (367) T ss_pred HHHHHHHCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHH---HH T ss_conf 317887266770353001000003661699752006889988850224421614898999886313557668888---88 Q ss_pred EEEECCCCCCCCCCCHHCCCCC---------------------------CCCCCCCCCCCCCCCCCCC------------ Q ss_conf 7651233335610000001344---------------------------4322343322222344444------------ Q gi|254780294|r 143 INAVSGYTGGGKKLISRMEQKN---------------------------MPDTISSNHFFYSLDLLHK------------ 183 (311) Q Consensus 143 ~~~~sg~sgaG~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~------------ 183 (311) +.+||++||+|..-+.++-.+- ...+...+...+..+.... T Consensus 158 ~~tyqaasG~Ga~hm~ell~~mG~~~~~v~~~l~~~~~~il~i~~kv~~~~r~~~~P~~~f~~Pla~~liPWid~~l~nG 237 (367) T TIGR01745 158 VATYQAASGGGARHMRELLKQMGVLYKEVEEELAKPSSAILEIERKVTKLIRSEELPVENFSVPLAGSLIPWIDKQLDNG 237 (367) T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCC T ss_conf 64432014420689999998631899988987521036766677677665420016600126651110001343231057 Q ss_pred -------CCCCHHHHCCCC--EEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCC Q ss_conf -------342013321671--13688752034332027899998632577544899886654220014430560278788 Q gi|254780294|r 184 -------HLPEITQYSLIK--TSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESR 254 (311) Q Consensus 184 -------h~~e~~~~~~~~--~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~ 254 (311) .+.|..++.... ..+.-.|.++--.|+|.....+. ..+.+..+++.+.+.. ..+++.++|++... T Consensus 238 qs~eeWkGqae~nkil~t~~~i~~dG~Cvr~G~lrChs~~~~~k---lk~d~~~~~~e~~~~~---~n~W~~~~Pn~~~~ 311 (367) T TIGR01745 238 QSREEWKGQAETNKILGTKSTIPVDGLCVRIGALRCHSQALTIK---LKKDVSLEEIEEIIRA---HNPWVKVVPNEREI 311 (367) T ss_pred CCHHHHCCHHHHHHHHCCCCEEEECCEEEEEECEEEEEEEEEEE---EECCCCHHHHHHHHHC---CCCEEEECCCCHHH T ss_conf 63023133145665523343466454478750200000002344---2035777889999864---69714425770466 Q ss_pred CCCCCCHHHHCCCCEEEEEEEEE--CCCCEEEEEEEECCCHHHHHHHHHHHHH Q ss_conf 78986427627996079999980--8997699999722210136899999999 Q gi|254780294|r 255 KIKTIACEMMSGNDKLHLFFFDS--SELPYINIIAVFDNLGKGASGAAIQNMD 305 (311) Q Consensus 255 ~~~~p~~~~~~g~n~v~Vg~~~~--~~~~~~~v~s~~DNL~KGAAgnAVQn~n 305 (311) .....+|..+.|+-.+-|||.|. .....+..|.++|+|++|||---=.-++ T Consensus 312 t~~~ltP~~~tG~l~~~~Gr~rklnmG~~y~saf~~GdqllWGaaePlrrml~ 364 (367) T TIGR01745 312 TLRELTPAAVTGTLDIPVGRLRKLNMGPEYLSAFTVGDQLLWGAAEPLRRMLR 364 (367) T ss_pred HHHHCCCCCEECCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 88633731110320025220000003534654443322444302038999999 No 21 >PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional Probab=99.44 E-value=1.4e-10 Score=84.66 Aligned_cols=281 Identities=14% Similarity=0.134 Sum_probs=178.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CCC-------------C-----------------CCCC------ Q ss_conf 90799975886789999999862997289999653-007-------------8-----------------6006------ Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ERH-------------N-----------------LRYR------ 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~a-------------g-----------------~~~~------ 43 (311) |.||||=|= |=.|+-++|.+.++|.+++..+-.. .+. | +++. T Consensus 2 ~ikigINGF-GRIGR~v~R~~~~~~~i~vvaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~d 80 (337) T PTZ00023 2 VVKIGINGF-GRIGRLVHRASLARENVEVVAINDPFMTPDYIKYLLKYDSVHGSLPCEVSVTSDHLMIGSKKVHLFFEKD 80 (337) T ss_pred CEEEEEECC-CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEECCCC T ss_conf 679999568-7789999999841899489997899999999999865367899899978983895999997887505699 Q ss_pred -HHH-H--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCC Q ss_conf -677-4--799899993898378999999861258489822763035554311002100047765204960772584211 Q gi|254780294|r 44 -EDL-L--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYA 119 (311) Q Consensus 44 -~~~-~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~ 119 (311) .+. + .++|+|+=|+|.-.+++-+....++|...++|+.-+. ++.|.+|+.||.+.++ .+.++|+|-=|+| T Consensus 81 p~~ipW~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiSAP~~----d~~~t~V~GVN~~~~~--~~~~IISnASCTT 154 (337) T PTZ00023 81 PSQIPWGKNDVDVVAECTGVFTSTEKAKLHLKGGAKLVIISAPPS----DSTPIYVFGVNHTQYD--KSQRIVSNASCTT 154 (337) T ss_pred HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEECCHHHCC--CCCCEEECCCCCC T ss_conf 666992203987899626544688999999876997799768998----8886799835634348--7672896563100 Q ss_pred CCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-C Q ss_conf 33112478888850345565026765123333561000000134----443223433222223444443420133216-7 Q gi|254780294|r 120 TGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK----NMPDTISSNHFFYSLDLLHKHLPEITQYSL-I 194 (311) Q Consensus 120 t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~ 194 (311) .|+...++-|++.++|+....+|+.++.+.. ...+..+.. ........|..+...+ -...+.+..+ . T Consensus 155 NclAPl~kvL~~~fgI~~g~mTTIHsyT~~Q----~l~D~~h~~~kD~Rr~Raa~~nIIPtsTg----AakAi~~VlPeL 226 (337) T PTZ00023 155 NCLAPLAKVINDNFGIVEGLMTTVHAVTANQ----LTVDGASRGGKDWRAGRCAGVNIIPASTG----AAKAVGKVIPEL 226 (337) T ss_pred CCHHHHHHHHHHHCCEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCHHHHCCCCCCCC----HHHHHHHHHHHH T ss_conf 3003079878653486787899863466887----30457786777545664254178866563----889998540530 Q ss_pred CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE-- Q ss_conf 113688752034332027899998632577544899886654220014430560278788789864276279960799-- Q gi|254780294|r 195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL-- 272 (311) Q Consensus 195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V-- 272 (311) ..++.....++|.+.+.+.-..+. ..+.+..+++.+.+.+..++ ++-.++...+.|- ++. +..|+.+--| T Consensus 227 ~GKl~g~A~RVPt~~vS~vDlt~~---l~k~~s~eein~~~~~aa~~-~lkgil~y~~~pl---VS~-Df~g~~~S~i~D 298 (337) T PTZ00023 227 NGKLTGMAFRVPVSDVSVVDLTCR---LAKPAKYEEIVLAVKAAAEG-PLKGILGYTEDEV---VSS-DFVHDKRSSIFD 298 (337) T ss_pred CCCCCEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---CCC-CCCCCCCCCEEE T ss_conf 797303689437877458999999---64764289999999998526-5688687888860---122-108999411588 Q ss_pred -E--EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf -9--9980899769999972221013689999999987 Q gi|254780294|r 273 -F--FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL 307 (311) Q Consensus 273 -g--~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm 307 (311) . ...+ .+.+.+++=-||= +|=|-+-+--+..| T Consensus 299 ~~~t~~~~--~~~vKv~~WYDNE-wGYs~R~~dla~~i 333 (337) T PTZ00023 299 VKAGIALN--DTFVKLVSWYDNE-WGYSNRLLDLAVYI 333 (337) T ss_pred CCCCEEEC--CCEEEEEEEECCH-HHHHHHHHHHHHHH T ss_conf 23479987--9989999998866-99999999999999 No 22 >COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism] Probab=99.36 E-value=7.5e-10 Score=80.19 Aligned_cols=275 Identities=15% Similarity=0.158 Sum_probs=181.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC-------------CCC-----------------CC-----CH Q ss_conf 9079997588678999999986299-728999965300-------------786-----------------00-----66 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER-------------HNL-----------------RY-----RE 44 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~-------------ag~-----------------~~-----~~ 44 (311) |.||||=|= |-.|+...|.+.+++ .+|+..+..-.. -|. .+ .+ T Consensus 1 ~ikV~INGf-GrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llk~Ds~hg~f~~~v~~~~~~~~v~g~~I~v~~~~~ 79 (335) T COG0057 1 MIKVAINGF-GRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAERD 79 (335) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCCEEEEEECCC T ss_conf 908999457-5788999999971789759999936899789989986425578877732247874898995268873289 Q ss_pred -HHHC----CCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf -7747----9989999389837899999986125-848982276303555431100210004776520496077258421 Q gi|254780294|r 45 -DLLN----AADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 45 -~~~~----~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) +.+. ++|+|+=|+|-..+++-+++..++| ...+++..-+. .+++-++..+|.+..+. +..+|+|--|+ T Consensus 80 p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~----~~~~~vv~gvn~~~~~~--~~~iVsnaSCT 153 (335) T COG0057 80 PANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGK----DDVATVVYGVNHNYYDA--GHTIVSNASCT 153 (335) T ss_pred HHHCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCC----CCCCEEEEECCCCCCCC--CCCEEEECCCH T ss_conf 6879812128639998998766633479998745997899857898----88617998525133578--88489874511 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CEE Q ss_conf 1331124788888503455650267651233335610000001344432234332222234444434201332167-113 Q gi|254780294|r 119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI-KTS 197 (311) Q Consensus 119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~~ 197 (311) |+|+.-.+++|.+.++|++...+|+.++..- ...++..+.. ..-.........+....|.+.+....++ ..+ T Consensus 154 TNcLap~~kvl~d~fGI~~g~mTtVh~~T~d----Q~~~dgph~~---~rr~raa~~niIp~sTgaAkav~~VlP~L~GK 226 (335) T COG0057 154 TNCLAPVAKVLNDAFGIEKGLMTTVHAYTND----QKLVDGPHKD---LRRARAAALNIIPTSTGAAKAVGLVLPELKGK 226 (335) T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEEECCCCC----CCCCCCCCCC---HHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCC T ss_conf 3006787999988609459999999701598----7444476522---01001234777757874233176647045784 Q ss_pred EEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEE---EEEE Q ss_conf 6887520343320278999986325775448998866542200144305602787887898642762799607---9999 Q gi|254780294|r 198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKL---HLFF 274 (311) Q Consensus 198 ~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v---~Vg~ 274 (311) +.-...++|.+.++.+...+. ..+.++.+|+.+.+.+.... .+-.++...+.+ .+++|+. +.++ T Consensus 227 l~g~A~RVPt~~vs~~dl~v~---l~k~~t~eeIn~alk~as~~-~lkg~~~y~e~~---------~Vs~D~~~~~~ssI 293 (335) T COG0057 227 LTGMAIRVPTPNVSVVDLTVE---LEKEVTVEEINAALKAASEI-GLKGILGYTEDP---------LVSSDFNGDPHSSI 293 (335) T ss_pred EEEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHCC-CCCCEEEEEECC---------CCCCCCCCCCCEEE T ss_conf 556899905887279999999---68878899999999986402-654236246413---------02665689944168 Q ss_pred EEE-----CCCCEEEEEEEECCCHHHHHHHHHHH Q ss_conf 980-----89976999997222101368999999 Q gi|254780294|r 275 FDS-----SELPYINIIAVFDNLGKGASGAAIQN 303 (311) Q Consensus 275 ~~~-----~~~~~~~v~s~~DNL~KGAAgnAVQn 303 (311) +.. .+.+.+.+++-.||= .|-+-+-|-. T Consensus 294 ~d~~~t~~~~~~~vk~~~wydNE-~gys~r~vD~ 326 (335) T COG0057 294 FDASATIVLGGNLVKLVAWYDNE-WGYSNRVVDL 326 (335) T ss_pred EECCCEEEECCCEEEEEEEEECC-CCCHHHHHHH T ss_conf 97675687067489999999154-3225778999 No 23 >PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed Probab=99.33 E-value=1.5e-09 Score=78.35 Aligned_cols=283 Identities=12% Similarity=0.080 Sum_probs=176.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHC--CCCEEEEEEECCCCC-------------C-----------------CCCC----- Q ss_conf 90799975886789999999862--997289999653007-------------8-----------------6006----- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQ--RKDLCLLSIPCEERH-------------N-----------------LRYR----- 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~--hp~~~l~~l~s~~~a-------------g-----------------~~~~----- 43 (311) |+||||=|= |=.|+-++|.+.+ ++.+++..+-..... | +++. T Consensus 1 MikIgINGF-GRIGR~vlR~~~~~~~~~ieiVaINd~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~ 79 (337) T PRK07403 1 MIRVAINGF-GRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337) T ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEEEEEECC T ss_conf 909999688-8789999999985669986999984799889999986714789998985897199899999887888059 Q ss_pred ---HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf ---6774--79989999389837899999986125848982276303555431100210004776520496077258421 Q gi|254780294|r 44 ---EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 44 ---~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) +..+ .++|+|+=|+|.-.+++-+....++|...++|+ +.-.+++.|-+|..+|.+.++. ++.++|+|.-|+ T Consensus 80 ~p~~i~W~~~gvDiViEcTG~f~~~~~a~~Hl~~GakkViiS---AP~k~~d~~tiV~GVN~~~~~~-~~h~IIS~aSCT 155 (337) T PRK07403 80 NPLNLPWAEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLIT---APGKGEGIGTYVVGVNHHEYDH-EDYNIISNASCT 155 (337) T ss_pred CHHHCCHHHCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEEC---CCCCCCCCCEEEEECCHHHCCC-CCCEEEECCCHH T ss_conf 966698013099899989865487788999875698679980---6998887666998426355375-444189736258 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CE Q ss_conf 133112478888850345565026765123333561000000134-4432234332222234444434201332167-11 Q gi|254780294|r 119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSLI-KT 196 (311) Q Consensus 119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~ 196 (311) |.|+...++.|++.++|.....+|+.++.+..-. ++..+.. ........|..+... .-...+.+..++ .. T Consensus 156 TNclAPv~kvL~~~fgI~~g~mTTIHa~T~~Q~l----~D~~~~D~Rr~Raa~~nIIPtsT----gAakAi~~vlP~L~G 227 (337) T PRK07403 156 TNCLAPIAKVIHDNFGIIKGTMTTTHSYTGDQRI----LDASHRDLRRARAAAVNIVPTST----GAAKAVALVIPELKG 227 (337) T ss_pred HHHHHHHHHHHHHHCCEEEEEEEEECCCCCCCCC----CCCCCCCCCCCCCHHHCCCCCCC----CHHHHHHHHHHHCCC T ss_conf 7668889998875158759999887347788752----56777864566636547886655----378889876450289 Q ss_pred EEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE---- Q ss_conf 3688752034332027899998632577544899886654220014430560278788789864276279960799---- Q gi|254780294|r 197 SPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL---- 272 (311) Q Consensus 197 ~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V---- 272 (311) ++.....++|.+.+.+.-..+. ..+.+..+++...+.+..+. ++..++...+.|- ++. +..|+.+--| T Consensus 228 kl~g~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~~~aa~~-~l~gil~~~~~pl---VS~-Df~g~~~S~i~D~~ 299 (337) T PRK07403 228 KLNGIALRVPTPNVSVVDLVVQ---VEKPTITEQVNEVLKDAAEG-PLKGILEYSDLPL---VSS-DYRGTDASSIVDAS 299 (337) T ss_pred CEEEEEEECCCCCCEEEEEEEE---CCCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---CCC-CCCCCCCHHHEECC T ss_conf 7646888427777427999997---38877499999999998657-6478654578860---152-10899812737440 Q ss_pred -EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf -99980899769999972221013689999999987 Q gi|254780294|r 273 -FFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL 307 (311) Q Consensus 273 -g~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm 307 (311) +...+..--++..|- ||= +|=|-+-+--++.| T Consensus 300 ~t~v~~~~~vKv~~WY--DNE-wGYs~R~~dl~~~i 332 (337) T PRK07403 300 LTMVMGGDMVKVIAWY--DNE-WGYSQRVVDLAELV 332 (337) T ss_pred CCEEECCCEEEEEEEE--CCH-HHHHHHHHHHHHHH T ss_conf 2789789889999998--971-89999999999999 No 24 >PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated Probab=99.32 E-value=1.1e-09 Score=79.08 Aligned_cols=282 Identities=11% Similarity=0.089 Sum_probs=176.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CC-------------CC-----------------CC------- Q ss_conf 907999758867899999998629972899996530-07-------------86-----------------00------- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RH-------------NL-----------------RY------- 42 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~a-------------g~-----------------~~------- 42 (311) ++||||=|= |=.|+-++|.+.++|.+|+..+-.-. .. |+ ++ T Consensus 2 tirIgINGF-GRIGR~v~R~~~~~~~ievVaIND~~~d~~~~ayLLkyDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~ 80 (333) T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDWPEVEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDDIVINGKRIRTTQNKA 80 (333) T ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCEEEECCEEEEEECCCC T ss_conf 679999578-8789999999852899089999179999899999860126789899868980996999999987741488 Q ss_pred -CHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC Q ss_conf -6677479989999389837899999986125848982276303555431100210004776520496077258421133 Q gi|254780294|r 43 -REDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311) Q Consensus 43 -~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311) .+..++++|+|+=|++.-.+++-+....++|...++|+.-+ -+++.+-+|..+|.+.++.. ..++|+|.-|+|.| T Consensus 81 p~~i~W~~vDiViEcTG~f~t~~~a~~Hl~~GakkViiSaP~---k~~~~~tiV~GVN~~~~~~~-~~~iiS~aSCTTNc 156 (333) T PRK08955 81 IADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV---KEEGVLNIVMGVNDHLYDPA-IHPIVTAASCTTNC 156 (333) T ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC---CCCCCEEEEEECCHHHCCCC-CCCEEECCCHHHHH T ss_conf 012786667689991676688899999987598579965799---87774048996032214765-47578746414213 Q ss_pred CHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-CCEEEE Q ss_conf 112478888850345565026765123333561000000134-443223433222223444443420133216-711368 Q gi|254780294|r 122 AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSL-IKTSPM 199 (311) Q Consensus 122 ~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~~~~~~ 199 (311) +...++.|.+.++|+....+|+.++.+..- ..+..+.. ........|..+...+ -...+.+..+ ...++. T Consensus 157 lAP~~kvl~~~fgI~~g~mTTiHa~T~~Q~----l~D~~h~d~Rr~Raa~~nIIPttTg----Aakai~~vlP~L~GKl~ 228 (333) T PRK08955 157 LAPVVKVIHEKLGIKHGSMTTIHDLTNTQT----ILDAPHKDLRRARACGMSLIPTTTG----SATAITEIFPELKGKLN 228 (333) T ss_pred HHHHHHHHHHHCCEEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHCCCCCCCEE T ss_conf 476999888635841677875503668862----4777888633474220457877663----88999864421389634 Q ss_pred EEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE---E--E Q ss_conf 8752034332027899998632577544899886654220014430560278788789864276279960799---9--9 Q gi|254780294|r 200 FLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL---F--F 274 (311) Q Consensus 200 ~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V---g--~ 274 (311) -...++|.+.+.+.-..+. ..+.+..+++.+.+.+..+. ++-.++...+.|- ++. +..|+..--| . . T Consensus 229 g~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~~~aa~~-~lkgil~~~~~p~---VS~-D~~g~~~S~i~D~~~t~ 300 (333) T PRK08955 229 GHAVRVPLANASLTDCVFE---VERDTTEEEVNALLKEAAEG-ELKGILGYEERPL---VSI-DYKTDPRSSIVDALSTM 300 (333) T ss_pred EEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCCC---HHH-HHCCCCCHHEEEHHHCE T ss_conf 7999537877617999999---75877799999999999738-7688798878961---112-00899932148830088 Q ss_pred EEECCCCEEEEEEEECCCHHHHHHHHHHHHHH Q ss_conf 98089976999997222101368999999998 Q gi|254780294|r 275 FDSSELPYINIIAVFDNLGKGASGAAIQNMDL 306 (311) Q Consensus 275 ~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nl 306 (311) ..+++--++..|- ||= +|=|-.-+--+.. T Consensus 301 ~~~~~~vKv~~WY--DNE-wGYs~Rl~dl~~~ 329 (333) T PRK08955 301 VVNGTQVKLYAWY--DNE-WGYANRTAELARK 329 (333) T ss_pred EECCCEEEEEEEE--CCH-HHHHHHHHHHHHH T ss_conf 9679899999999--966-8999999999999 No 25 >PRK13535 erythrose 4-phosphate dehydrogenase; Provisional Probab=99.17 E-value=2.6e-08 Score=70.67 Aligned_cols=281 Identities=14% Similarity=0.130 Sum_probs=173.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHC---CCCEEEEEEECCCCC-------------C-----------------CCC------ Q ss_conf 0799975886789999999862---997289999653007-------------8-----------------600------ Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ---RKDLCLLSIPCEERH-------------N-----------------LRY------ 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~---hp~~~l~~l~s~~~a-------------g-----------------~~~------ 42 (311) +||||=|= |=.|+-++|.|.+ ++.+++..+-.-... | +++ T Consensus 2 ikIgINGF-GRIGR~v~R~~~e~~~~~~i~vVaINd~~~~~~~ayLLkyDSvhG~~~~~v~~~~~~l~v~~~~I~~~~~~ 80 (336) T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRLLHER 80 (336) T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEEECCEEEECCEEEEEEECC T ss_conf 69999788-88999999999866889986999978899989999986422678889997897089799999899999558 Q ss_pred --CHHHHC--CCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf --667747--9989999389837899999986125848982276303555431100210004776520496077258421 Q gi|254780294|r 43 --REDLLN--AADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 43 --~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) .+..+. ++|+|+=|++.-.+++-+....++|.+.++|+..+.--.| +-+|..||.+.++. ..++|+|.-|+ T Consensus 81 dp~~ipW~~~~vD~ViE~TG~f~~~~~a~~Hl~~GakkViiSaP~~~~~d---~tiV~GVN~~~~~~--~~~IiSnASCT 155 (336) T PRK13535 81 DLASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLD---ATVVYGVNHDQLRA--EHRIVSNASCT 155 (336) T ss_pred CHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCC---CEEEECCCHHHCCC--CCEEEECCCCC T ss_conf 94339831158759997043116789999998759856898258876668---63896157567486--65389757533 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCC---CCCCCCCHHHHCCC Q ss_conf 133112478888850345565026765123333561000000134-44322343322222344---44434201332167 Q gi|254780294|r 119 ATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDL---LHKHLPEITQYSLI 194 (311) Q Consensus 119 ~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~h~~e~~~~~~~ 194 (311) |.|+...++-|++.++|.....+|+.++.+..- ..+..+.. ........|..|...+. ..+..||+ T Consensus 156 TNclAPv~kvl~~~fGI~~g~mTTIHa~T~~Q~----l~D~~h~d~Rr~Raa~~nIIPtsTgAakAi~~VlP~L------ 225 (336) T PRK13535 156 TNCIIPVIKLLDDAFGIESGTVTTIHSAMNDQQ----VIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQF------ 225 (336) T ss_pred CCEEEEHHHHHHHCCCEEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCHHHCCEECCCHHHHHHHHHCHHH------ T ss_conf 241401255366336757757887723768776----6667788863444024375456621788885216543------ Q ss_pred CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE-- Q ss_conf 113688752034332027899998632577544899886654220014430560278788789864276279960799-- Q gi|254780294|r 195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL-- 272 (311) Q Consensus 195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V-- 272 (311) ..++.-...++|.+.+.+.-..+. ..+.+..+++.+.+.+..+. ++-.++...+.| .++. +..|+.+--| T Consensus 226 ~GKl~G~a~RVPt~~vS~vDlt~~---l~k~~t~eein~~~k~aa~~-~lkgil~y~~~~---lVS~-Df~~~~~SsI~D 297 (336) T PRK13535 226 NDRFEAISVRVPTINVTAIDLSVT---VKKPVKVNEVNQLLQKAAQG-AFHGIVDYTELP---LVSI-DFNHDPHSAIVD 297 (336) T ss_pred CCCEEEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCC---EEEE-CCCCCCCCEEEE T ss_conf 786437899767897158999999---63665489999999998536-447844438796---4242-049999500787 Q ss_pred -EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf -99980899769999972221013689999999987 Q gi|254780294|r 273 -FFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL 307 (311) Q Consensus 273 -g~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm 307 (311) ....--.++.+.+++=-||= +|=|-+-+--+..| T Consensus 298 ~~~t~v~~~~~vKv~aWYDNE-wGYs~R~vdla~~m 332 (336) T PRK13535 298 GTQTRVSGAHLIKTLVWCDNE-WGFANRMLDTTLAM 332 (336) T ss_pred HHHCEEECCCEEEEEEEECCH-HHHHHHHHHHHHHH T ss_conf 304599789889999998867-99999999999999 No 26 >PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated Probab=99.16 E-value=3e-08 Score=70.27 Aligned_cols=282 Identities=12% Similarity=0.129 Sum_probs=173.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------------C-----------------CCCC------- Q ss_conf 90799975886789999999862997289999653007-------------8-----------------6006------- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------------N-----------------LRYR------- 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------------g-----------------~~~~------- 43 (311) ++||||=|= |=.|+-++|.+.+++.+++..+-..... | +++. T Consensus 2 ~irIgINGF-GRIGR~v~R~~~~~~~i~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~v~g~~I~~~~~~dp 80 (343) T PRK07729 2 KVRVAINGF-GRIGRMVFRQAIKESAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVNGKKIRLLNNRDP 80 (343) T ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCCCEEECCCEEEECCEEECCCCCCCH T ss_conf 679999788-8689999999966899889998489998999997585277898899789719979999975012366996 Q ss_pred -HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCC Q ss_conf -6774--7998999938983789999998612584898227630355543110021000477652049607725842113 Q gi|254780294|r 44 -EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYAT 120 (311) Q Consensus 44 -~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t 120 (311) +..+ -++|+|+=|++.-.+++-+....++|...++|+.-+ -+++. -+|..||.+.++. ...++|+|.-|+|. T Consensus 81 ~~i~W~~~gvD~ViE~TG~f~~~e~a~~Hl~~GakkViiSAP~---k~~d~-tiV~GVN~~~~~~-~~~~IiSnASCTTN 155 (343) T PRK07729 81 KELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG---KNEDV-TIVVGVNEDQLDI-EKHTVISNASCTTN 155 (343) T ss_pred HHCCCCCCCCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCC---CCCCC-EEEEECCHHHCCC-CCCCEEECCCHHHH T ss_conf 7788410388499974755678899998885498679988898---99974-5997235554576-54838973847988 Q ss_pred CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-CCEEE Q ss_conf 3112478888850345565026765123333561000000134-443223433222223444443420133216-71136 Q gi|254780294|r 121 GAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQK-NMPDTISSNHFFYSLDLLHKHLPEITQYSL-IKTSP 198 (311) Q Consensus 121 ~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~-~~~~~ 198 (311) |+...++-|++.++|+....+|+.++.+..- ..+..+.. ........|..|...+ -...+.+..+ ...++ T Consensus 156 clAPv~kvL~~~fGI~~g~mTTIHa~T~dQ~----l~D~~hkD~Rr~Raa~~nIIPtsTG----AAkAi~~VlPeL~GKl 227 (343) T PRK07729 156 CLAPVVKVLDEQFGIENGLMTTVHAYTNDQK----NIDNPHKDLRRARACGQSIIPTTTG----AAKALAKVLPHLNGKL 227 (343) T ss_pred HHHHHHHHHHHHCCCEEEEEEEEECCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCC----HHHHHHHHHHHHCCCC T ss_conf 8999999998653801899998861579850----3678877545563202127856453----8899986434207872 Q ss_pred EEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCE-EEE--E-- Q ss_conf 88752034332027899998632577544899886654220014430560278788789864276279960-799--9-- Q gi|254780294|r 199 MFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDK-LHL--F-- 273 (311) Q Consensus 199 ~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~-v~V--g-- 273 (311) .....++|.+.+.+.-..+. ..+.+..+++...+.+..++ ++-.++...+.| .++. +..|... +-+ . T Consensus 228 ~G~A~RVPt~~vS~vDlt~~---l~k~~t~eeIn~~~k~aa~~-~l~gil~y~~~p---lVS~-D~~g~~~Ssi~D~~~t 299 (343) T PRK07729 228 HGMALRVPTPNVSLVDLVVD---VKRDVTVEAINEAFKTAANG-ALKGILEFSEEP---LVSI-DFNTNTHSAIIDGLST 299 (343) T ss_pred CEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC-CCCCEEEEECCC---CHHH-CCCCCCCHHEEEHHHC T ss_conf 12687057777607999999---67878799999999998627-888867768885---3112-0089992232754008 Q ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHH Q ss_conf 9980899769999972221013689999999987 Q gi|254780294|r 274 FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLL 307 (311) Q Consensus 274 ~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm 307 (311) ...+ .+.+.+++=-||= +|=|-.-+--+..| T Consensus 300 ~v~~--~~~vKv~~WYDNE-wGYs~R~~dl~~~i 330 (343) T PRK07729 300 MVMG--DRKVKVLAWYDNE-WGYSCRVVDLVTLV 330 (343) T ss_pred EEEC--CCEEEEEEEECCH-HHHHHHHHHHHHHH T ss_conf 8978--9889999998865-99999999999999 No 27 >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional Probab=99.08 E-value=1.8e-08 Score=71.63 Aligned_cols=213 Identities=16% Similarity=0.183 Sum_probs=145.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC---------CCCCCC---------------------CHHHHCCC Q ss_conf 907999758867899999998629972899996530---------078600---------------------66774799 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE---------RHNLRY---------------------REDLLNAA 50 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~---------~ag~~~---------------------~~~~~~~~ 50 (311) |+||||-|= |-.|++.-+.....|..++.-++..+ +.|..+ -++.++++ T Consensus 2 ~ikV~INGy-GtIGkRVAdav~~q~DmelVGV~k~~pd~~a~~a~~kG~~vy~~~~~~~~~F~~aGi~v~Gtiedll~~a 80 (338) T PRK04207 2 MIKVAVNGY-GTIGKRVADAVAAQDDMEVVGVSKTKPDYEARVAVERGYPLYVADPERLDAFEKAGIEVAGTIEDLLEKA 80 (338) T ss_pred CEEEEEECC-CCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCCEEECCHHHHHHHHHCCCCCCCCHHHHHHCC T ss_conf 489998248-6055899888735998189978679997789999986996785377666568756986667688975218 Q ss_pred CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHH-HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH Q ss_conf 899993898378999999861258489822763035554311-0021000477652049607725842113311247888 Q gi|254780294|r 51 DVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWV-YGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL 129 (311) Q Consensus 51 Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vp-l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL 129 (311) |+|+=|+|.++..+..+...+.|.. .++.-+-.+ +..+ .-....|. +...++.+|-+.-|+||++.-.|+|| T Consensus 81 DvVvDcTP~g~G~~Nk~~Y~~~g~k-aIfQGGEk~---~va~~sFna~~Ny---~~a~Gk~~vrvvSCNTTgL~R~l~~L 153 (338) T PRK04207 81 DIVVDATPGGVGAKNKPLYEKAGVK-AIFQGGEKA---EVAEVSFNALANY---EEAIGKDYVRVVSCNTTGLCRTLYPL 153 (338) T ss_pred CEEEECCCCCCCCCCHHHHHHCCCC-EEEECCCCC---CCCCCEEEEECCH---HHHCCCCCEEEEEECCCCHHHHHHHH T ss_conf 9999899976440022768875983-799658876---7677506730145---77638763799653203457889999 Q ss_pred HHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEEEEEEECCCCCC Q ss_conf 88503455650267651233335610000001344432234332222234444434201332167113688752034332 Q gi|254780294|r 130 RKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQ 209 (311) Q Consensus 130 ~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~~~~~~~~~~~~~~~~ 209 (311) .+.+++++...+++ |.+.+.-+....+ .+...+.....-..|.|........ ..+.-....+|... T Consensus 154 ~~~~gi~k~r~tlv----------RRaaDp~~~~kGp---Inai~p~p~~iPSHHgpDv~tV~p~-l~i~t~AvkVPttl 219 (338) T PRK04207 154 REAFGVKKVRATLV----------RRAADPNEVKKGP---INAIVPDPVTIPSHHGPDVKTVLPD-LDIVTMAVKVPTTL 219 (338) T ss_pred HHHCCCCEEEEEEE----------EECCCHHHHCCCC---CCCCCCCCCCCCCCCCCCHHHHCCC-CCEEEEEEECCCCE T ss_conf 87518226999999----------8338944503587---4431579977888766008875679-87168999748630 Q ss_pred EEEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 02789999863257754489988665422 Q gi|254780294|r 210 GIAIQISLDMERLSWKTNSEELHSIFQEY 238 (311) Q Consensus 210 g~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 238 (311) -|++++.+.+ .++.+.+++.+.+.+. T Consensus 220 mH~H~~~v~l---~~~~t~~eVl~~~~~~ 245 (338) T PRK04207 220 MHMHSINVEL---KKPVTKDDVLEALENT 245 (338) T ss_pred EEEEEEEEEE---CCCCCHHHHHHHHHHC T ss_conf 5899999997---9988889999999638 No 28 >PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed Probab=98.91 E-value=1.3e-06 Score=60.19 Aligned_cols=276 Identities=12% Similarity=0.137 Sum_probs=165.6 Q ss_pred CCHHHHHHHHHHHCC----CCEEEEEEECCCCCCCCC----------------------CHH-----------------H Q ss_conf 867899999998629----972899996530078600----------------------667-----------------7 Q gi|254780294|r 10 HGTTGLKIRSRIVQR----KDLCLLSIPCEERHNLRY----------------------RED-----------------L 46 (311) Q Consensus 10 TG~vG~~li~lL~~h----p~~~l~~l~s~~~ag~~~----------------------~~~-----------------~ 46 (311) =|=.|+-|-|+|-++ ....|+.+--+......+ +++ . T Consensus 137 FGRIGRLlAR~Lie~~g~g~~lrLrAIVvR~~~~~DL~KRAsLLr~DSvHG~F~Gti~vd~e~~~livNG~~I~v~~~~~ 216 (479) T PRK08289 137 FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGKEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGNYIQVIYANS 216 (479) T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEECCEEEEEEECCC T ss_conf 73799999999998628987468999998359657799999876013546674760899578897998995999997899 Q ss_pred -------HCCCC--EEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf -------47998--999938983789999998612-58489822763035554311002100047765204960772584 Q gi|254780294|r 47 -------LNAAD--VSILCLPDVASLEIIQLIKKN-GINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 47 -------~~~~D--ivf~a~p~~~s~~~~~~~~~~-g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) --++| +|+=|++--..++-+.+..++ |...++++.-+ ..++|-+|..||.+.++. ..+||+|.- T Consensus 217 P~~i~~~~~gi~~a~vie~TG~f~~~~~~~~Hl~~~Ga~kV~lsaP~----k~~~~~iV~GVN~~~~~~--~~~IiSnAS 290 (479) T PRK08289 217 PEEVDYTAYGINNALVVDNTGIWRDEEGLGQHLKSPGVAKVLLTAPG----KGDIKNIVHGVNHSDITD--EDKIVSAAS 290 (479) T ss_pred HHHCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEECCC----CCCCCEEEECCCHHHCCC--CCCEEECCC T ss_conf 10195234098503899566731247787535348776869993578----887534897456666698--664675476 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCC-CCCCCCCCCCCCCCC---CCCCCCCHHHHC Q ss_conf 2113311247888885034556502676512333356100000013444-322343322222344---444342013321 Q gi|254780294|r 117 CYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNM-PDTISSNHFFYSLDL---LHKHLPEITQYS 192 (311) Q Consensus 117 C~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~h~~e~~~~~ 192 (311) |+|.|+...++-|.+.++|......|+.+|.+- ....+..+.... ......|..+-..+. ..+..||+ T Consensus 291 CTTNclAPv~KvL~d~fGI~~G~mtTVHsyTnd----Q~liD~~hk~~RRgRaAa~NiIPTsTGAAkAv~~vlPeL---- 362 (479) T PRK08289 291 CTTNAITPVLKAVNDKYGIVNGHVETVHSYTND----QNLIDNYHKGDRRGRSAPLNMVITETGAAKAVAKALPEL---- 362 (479) T ss_pred HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC---- T ss_conf 265317899998753347479998863010287----516687788765677331121246663577788655055---- Q ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCCCCEEEE Q ss_conf 67113688752034332027899998632577544899886654220014430560278788789864276279960799 Q gi|254780294|r 193 LIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHL 272 (311) Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g~n~v~V 272 (311) ..++.-...++|.+.+.+.-..+. ..+.++.+++.+.+.+.....++-.++...+.|+. ++. +..|+..--| T Consensus 363 --~GKL~G~AiRVPtpnVS~vDLt~~---l~k~~t~eeiN~~lk~aa~~~~lkgil~yt~~pel--VSs-Dfig~~~SsI 434 (479) T PRK08289 363 --AGKLTGNAIRVPTPNVSMAILNLN---LEKETSREELNEYLRQMALHSPLQNQIDYTDSTEV--VSS-DFVGSRHAGV 434 (479) T ss_pred --CCCCCEEEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCE--ECC-CCCCCCCCEE T ss_conf --887506899888887078999999---77989999999999998744976663778658998--722-3389985479 Q ss_pred --E--EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCC Q ss_conf --9--9980899769999972221013689999999987238 Q gi|254780294|r 273 --F--FFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLLSS 310 (311) Q Consensus 273 --g--~~~~~~~~~~~v~s~~DNL~KGAAgnAVQn~nlm~g~ 310 (311) + -..+. +.+.+++=-||= +|=+-|-|.-++-|-|- T Consensus 435 ~D~~~T~v~g--~~~~l~~WYDNE-wGYS~rvv~l~~~ma~v 473 (479) T PRK08289 435 VDSQATIANG--NRAVLYVWYDNE-FGYSCQVVRVMEQMAGV 473 (479) T ss_pred EECCCEEEEC--CCEEEEEEECCC-HHHHHHHHHHHHHHHCC T ss_conf 9835219978--968999993671-99999999999998388 No 29 >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase; InterPro: IPR006422 This group of sequences represent the small clade of dehydrogenases in gamma-proteobacteria which utilise NAD+ to oxidize erythrose-4-phosphate (E4P) to 4-phospho-erythronate, a precursor for the de novo synthesis of pyridoxine via 4-hydroxythreonine and D-1-deoxyxylulose . This enzyme activity appears to have evolved from glyceraldehyde-3-phosphate dehydrogenase, whose substrate differs only in the lack of one carbon relative to E4P. It is possible that some of the GAPDH enzymes may prove to be bifunctional in certain species.; GO: 0016491 oxidoreductase activity, 0051287 NAD binding. Probab=98.80 E-value=1.6e-07 Score=65.76 Aligned_cols=270 Identities=13% Similarity=0.145 Sum_probs=171.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCCC------------------CCCHH------------------ Q ss_conf 79997588678999999986299-728999965300786------------------00667------------------ Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHNL------------------RYRED------------------ 45 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag~------------------~~~~~------------------ 45 (311) ||||=|= |=.|+..+|-|.|+| ..++..+|-.+-|.. +++.+ T Consensus 1 RVA~NGf-GRIGR~VlRAlyE~g~~~~~~vVA~N~LA~~~~~~~L~~yD~~HGRF~~~v~~d~d~l~v~~~~geyD~i~v 79 (334) T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGKRLEIEVVALNELADQASMAHLLRYDTSHGRFAKEVKVDRDQLYVNDQNGEYDAIRV 79 (334) T ss_pred CEEEECC-CCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHEEECCCEEEECCCCCCCCEEEE T ss_conf 9334047-621100033110388734148998501024689999987167777050120004627888366777204787 Q ss_pred --------H---HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC--HHHHHHHHHCCCCCCHHHHHHCCCCEEE Q ss_conf --------7---47998999938983789999998612584898227630--3555431100210004776520496077 Q gi|254780294|r 46 --------L---LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA--HRIAPGWVYGFPEMDKSQKEKIRSARYI 112 (311) Q Consensus 46 --------~---~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~--~R~~~~vpl~vPEvN~~~~~~~~~~~iI 112 (311) . -=++|+|+=|.|-=-+++-.+++.++|+..+.++.=.+ -.+|.- +|+.||.+.+.. ..+|| T Consensus 80 L~~~~~~~l~W~~L~VDlVL~C~G~Y~~r~~g~~~~~AGA~~VLFS~P~ase~DlDaT---ivYGVN~~~L~a--~~~~V 154 (334) T TIGR01532 80 LHSSELEALPWRELGVDLVLDCTGVYGSREQGERHIRAGAKRVLFSHPGASEADLDAT---IVYGVNQEDLSA--EHKIV 154 (334) T ss_pred ECCCCCCCCCHHHCCEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCE---EEEECCCCCCCC--CEEEE T ss_conf 4158866578135060089944766566688999987388634413888740126642---685021102352--30367 Q ss_pred ECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCC--CCCCCCCCCCCCCCCCCCCCCCHHH Q ss_conf 25842113311247888885034556502676512333356100000013444--3223433222223444443420133 Q gi|254780294|r 113 TNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNM--PDTISSNHFFYSLDLLHKHLPEITQ 190 (311) Q Consensus 113 anPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~e~~~ 190 (311) +|.-|+|.|++..||-|-+++++....++|+.+. =.-.+-++-+|.... ........+| ..-+-...|+. T Consensus 155 SNaSCTTNC~vP~~KlL~~A~G~e~~~iTTIHSa----M~DQ~VIDAYH~eDLRRTRaA~QSiIP----V~T~L~~GI~R 226 (334) T TIGR01532 155 SNASCTTNCIVPLIKLLDDAIGIESGTITTIHSA----MNDQQVIDAYHHEDLRRTRAASQSIIP----VDTKLARGIER 226 (334) T ss_pred ECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEEEC----CCCCCEEECCCCHHHHHHHHHCCCEEC----CCCCHHHHHHH T ss_conf 5565411101106432101215330146666403----468850223474013444544122200----44531211666 Q ss_pred HCCC-CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCC-----CCCCHHHH Q ss_conf 2167-11368875203433202789999863257754489988665422001443056027878878-----98642762 Q gi|254780294|r 191 YSLI-KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKI-----KTIACEMM 264 (311) Q Consensus 191 ~~~~-~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~-----~~p~~~~~ 264 (311) +.+. ..++.....++|.......=+.+. ..+.+...|+.+.+.+..+.-+|-.++...+.|.. ..|-..-| T Consensus 227 ~~P~~~~r~~A~avRVPTvNV~A~Dl~~~---~~~~~~~~evN~~l~~Aa~~G~lrG~~~YTElP~~S~DFNHDPHSAIV 303 (334) T TIGR01532 227 LFPEFADRFEAIAVRVPTVNVTALDLSVT---VKRDVKANEVNRVLREAAQSGALRGIVDYTELPLVSVDFNHDPHSAIV 303 (334) T ss_pred HHHHHCCCEEEEEEECCCCEEEEEEEEEE---ECCCCCHHHHHHHHHHHHCCCCCCEEHHHCCCCCEEEECCCCCCCEEE T ss_conf 40432474357898527102345556788---506763889999999875268520002111487035503689952367 Q ss_pred CCCCEEEEEEEEECCCCEEEEEEEECCCHHHH Q ss_conf 79960799999808997699999722210136 Q gi|254780294|r 265 SGNDKLHLFFFDSSELPYINIIAVFDNLGKGA 296 (311) Q Consensus 265 ~g~n~v~Vg~~~~~~~~~~~v~s~~DNL~KGA 296 (311) -|+ +.+|+ ...--.+.+|+ ||= +|= T Consensus 304 DG~-QTRVS---g~~Lv~~L~W~--DNE-WGF 328 (334) T TIGR01532 304 DGT-QTRVS---GARLVKLLVWC--DNE-WGF 328 (334) T ss_pred CCC-CCCCC---CHHHEEEEEEE--CCC-CCC T ss_conf 584-22004---15530010122--366-242 No 30 >PRK08300 acetaldehyde dehydrogenase; Validated Probab=98.73 E-value=1.5e-07 Score=65.91 Aligned_cols=119 Identities=18% Similarity=0.214 Sum_probs=94.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CCCCCC--------C---------HHHHCCCCEEEECCCCHHH Q ss_conf 07999758867899999998629972899996530--078600--------6---------6774799899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--RHNLRY--------R---------EDLLNAADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--~ag~~~--------~---------~~~~~~~Divf~a~p~~~s 62 (311) .||||+|. |..|.-|+--+.+.+++|..++.+.. |.|.+. + ...|.++|+||=|+....- T Consensus 5 ~~vAIiGs-GnIGtDLm~Ki~Rs~~le~~~~vG~dp~S~GL~rA~~lGv~ts~~GId~ll~~~~~~~idiVFDATSA~aH 83 (298) T PRK08300 5 IKVAIIGS-GNIGTDLMIKILRSPHLEPVAMVGIDPESDGLARARRLGVATTAEGIDGLLAHPEFDDIDIVFDATSAGAH 83 (298) T ss_pred CEEEEECC-CCHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCEEEECCCHHHH T ss_conf 34999888-83389999998657761069998059898499999984996637679999618335687889978980668 Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH Q ss_conf 99999986125848982276303555431100210004776520496077258421133112478 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR 127 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~ 127 (311) .+..+.+.+.| +++||+..+- -=|++||-||-+.....++-+.|+|-|=.+++++.++. T Consensus 84 ~~h~~~l~~~g--~~~IDLTPAa----iGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~Avs 142 (298) T PRK08300 84 VENAAKLRELG--VRVIDLTPAA----IGPYCVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAVS 142 (298) T ss_pred HHHHHHHHHCC--CEEEECCCCC----CCCEEECCCCHHHHCCCCCCCEEEECCCHHHHHHHHHH T ss_conf 99999999739--8799677002----69878763778995579986436555730218999987 No 31 >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. Probab=98.58 E-value=1.3e-06 Score=60.14 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=93.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC--CCCCCCC--------CH------HHHCCCCEEEECCCCHHHHHH Q ss_conf 0799975886789999999862997289999653--0078600--------66------774799899993898378999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE--ERHNLRY--------RE------DLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~--~~ag~~~--------~~------~~~~~~Divf~a~p~~~s~~~ 65 (311) +||||+|. |..|.-|+--+.+.+++|..++.+. +|.|.+. +. ....++|+||=|+....-.+. T Consensus 2 ~~vAIiGs-GnIGtDLm~Ki~rS~~le~~~~vG~dp~S~GL~rA~~lGv~~s~~Gid~ll~~~~idiVFDATSA~aH~~h 80 (285) T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARH 80 (285) T ss_pred CEEEEECC-CCHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHCCCCCEEEECCCHHHHHHH T ss_conf 36999899-83389999998667872169998248898289999984996637688989609997889966984679999 Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH Q ss_conf 99986125848982276303555431100210004776520496077258421133112478 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR 127 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~ 127 (311) .+.+.+.| +++||+..+- -=|++||-||-+.....++-+.|+|-|=.+++++.++. T Consensus 81 ~~~l~~~g--~~~IDLTPAa----iGp~~VP~VNl~~~l~~~NvNMVTCGGQAtiPiv~avs 136 (285) T TIGR03215 81 ARLLAELG--KIVIDLTPAA----IGPYVVPAVNLDEHLDAPNVNMVTCGGQATIPIVAAIS 136 (285) T ss_pred HHHHHHCC--CEEEECCCCC----CCCEEECCCCHHHHCCCCCCCEEEECCCCCCHHHHHHH T ss_conf 99999759--9799788101----59754555387895468886337655843018999875 No 32 >TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I; InterPro: IPR006424 This group of sequences represent glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilise NAD (1.2.1.12 from EC), NADP (1.2.1.13 from EC) or either (1.2.1.59 from EC). In some species, NAD- and NADP- utilising forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively . An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine . This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria . This enzyme is described by IPR006422 from INTERPRO. These two groups of sequences exhibit a close evolutionary relationship. There exists the possibility that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to possess a limited E4PD activity as well as a robust GAPDH activity ).; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0051287 NAD binding, 0006006 glucose metabolic process. Probab=98.43 E-value=5.1e-06 Score=56.46 Aligned_cols=190 Identities=15% Similarity=0.156 Sum_probs=132.4 Q ss_pred CCCCEEEECCCCHHHHHH--HHHHHHCC---CCEEEECCCCCH-HHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC Q ss_conf 799899993898378999--99986125---848982276303-555431100210004776520496077258421133 Q gi|254780294|r 48 NAADVSILCLPDVASLEI--IQLIKKNG---INSRIIDTSTAH-RIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~~--~~~~~~~g---~~~~vid~ss~~-R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311) .++|+|+=|+|-=.+++- ..+..++| .++++|+ +.| -.++..|=+|..||.+.++.-.+.+||+|-=|+|.| T Consensus 107 ~~vD~V~EcTG~f~~~~~~~l~~Hl~~G~~gAkKVlis--AP~k~~~~~~~t~V~GVN~~~y~~~~~~~iiSnASCTTNc 184 (366) T TIGR01534 107 LGVDIVIECTGKFRDKEKAALEKHLEAGNPGAKKVLIS--APFKSKGDAAPTIVYGVNHDEYDDPAEERIISNASCTTNC 184 (366) T ss_pred HCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEEE--CCCCCCCCCEEEEEECCCHHHHCCCCCCEEEECCCCHHHH T ss_conf 07328995887502762568989863679941268983--6888888960278866774560478886089825551357 Q ss_pred CHHHHHHHH---HHCCCCCCCCEEEEEECCCCCCCCCCCHHCC--CC-CCCCCCCCCCCCCCCCC---CCCCCCCHHHHC Q ss_conf 112478888---8503455650267651233335610000001--34-44322343322222344---444342013321 Q gi|254780294|r 122 AIAILRPLR---KAKLLPDRYPITINAVSGYTGGGKKLISRME--QK-NMPDTISSNHFFYSLDL---LHKHLPEITQYS 192 (311) Q Consensus 122 ~~laL~PL~---~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~--~~-~~~~~~~~~~~~~~~~~---~~~h~~e~~~~~ 192 (311) +...++.|+ +.|+|....-+|+-+|++. ...+|..+ .. ........|.++-..+- ...-+||+ T Consensus 185 lAP~~kvL~~hfe~FGI~~G~MTTvHsyT~d----Q~l~D~~~~~~D~Rr~RAAa~NiIPtsTGAAkA~~~VlP~L---- 256 (366) T TIGR01534 185 LAPLAKVLDEHFEEFGIVSGLMTTVHSYTND----QNLVDGPHRHKDLRRARAAALNIIPTSTGAAKAIGKVLPEL---- 256 (366) T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEECCC----CEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC---- T ss_conf 8999999987651043010169999865087----10420776888752013000266300346888998743577---- Q ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCC--CCEEECCCC Q ss_conf 671136887520343320278999986325775448998866542200144--305602787 Q gi|254780294|r 193 LIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQN--IVSVVPLEE 252 (311) Q Consensus 193 ~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~v~~~~~ 252 (311) .-++.-...|+|.+.|.++=..+. +.+.++.+++.+++.+..++.+ +-.++...+ T Consensus 257 --~GKL~G~A~RVPt~~vS~vdL~~~---l~k~~~~~~vnaA~k~a~~~~~~~l~g~lgy~~ 313 (366) T TIGR01534 257 --AGKLTGMAIRVPTPNVSLVDLVVN---LEKKVTKEEVNAALKEAAEGSTYLLKGVLGYTE 313 (366) T ss_pred --CCCEEEEEEEEECCCCEEEEEEEE---CCCCCCHHHHHHHHHHHHCCCCEEECCCEEEEC T ss_conf --764017899765389529999973---378778899999999984898374446100321 No 33 >PRK13303 L-aspartate dehydrogenase; Provisional Probab=98.14 E-value=2.5e-05 Score=52.23 Aligned_cols=82 Identities=18% Similarity=0.215 Sum_probs=64.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCC-------CC---C--HHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 907999758867899999998629972899996530-0786-------00---6--677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RHNL-------RY---R--EDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~ag~-------~~---~--~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) |+||+|+|- |..|+.+.+.|.+.+..++..+.... +.+. .. . ++..+++|+++=|++++.-++|++ T Consensus 1 MmrVgiiG~-GaIG~~va~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~DlVVE~A~~~av~~~~~ 79 (265) T PRK13303 1 MMKVAMIGF-GAIAAAVYELLEHDPRLRVDWVIVPEHSVDAVRRALGRAVQVVSSVDALAQRPDLVVECAGHAALKEHVV 79 (265) T ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH T ss_conf 929999854-6899999999844997279999946852677875304588644798898237999998988899999999 Q ss_pred HHHHCCCCEEEECCCC Q ss_conf 9861258489822763 Q gi|254780294|r 68 LIKKNGINSRIIDTST 83 (311) Q Consensus 68 ~~~~~g~~~~vid~ss 83 (311) ++.++|++..+.+-+. T Consensus 80 ~~L~~g~dl~v~SvgA 95 (265) T PRK13303 80 PILKAGIDCAVASVGA 95 (265) T ss_pred HHHHCCCCEEEECCHH T ss_conf 9997299889988158 No 34 >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] Probab=98.08 E-value=0.00014 Score=47.62 Aligned_cols=107 Identities=21% Similarity=0.247 Sum_probs=78.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-C-------CCCCCC------------HHHHCCCCEEEECCCCH Q ss_conf 907999758867899999998629972899996530-0-------786006------------67747998999938983 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-R-------HNLRYR------------EDLLNAADVSILCLPDV 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~-------ag~~~~------------~~~~~~~Divf~a~p~~ 60 (311) |.||-|+|| |-||+...+.|+++-..+++..+-+. + .+.+++ .+.+++.|+|+.|+|.- T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~ 79 (389) T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF 79 (389) T ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCH T ss_conf 972899898-6667999999985789629998488889999875334663169942567588999872577899928705 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC Q ss_conf 7899999986125848982276303555431100210004776520496077258421133 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311) +.......+.+.|. -++|.|...-- . ....+..+++++.+-|+|=-.+ T Consensus 80 ~~~~i~ka~i~~gv--~yvDts~~~~~----------~-~~~~~~a~~Agit~v~~~G~dP 127 (389) T COG1748 80 VDLTILKACIKTGV--DYVDTSYYEEP----------P-WKLDEEAKKAGITAVLGCGFDP 127 (389) T ss_pred HHHHHHHHHHHHCC--CEEECCCCCCH----------H-HHHHHHHHHCCCEEECCCCCCC T ss_conf 42999999998599--88975467750----------6-5654898874907971667686 No 35 >PTZ00325 malate dehydrogenase; Provisional Probab=98.06 E-value=4.9e-05 Score=50.38 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=33.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCCCCC Q ss_conf 907999758867899999998629972-8999965300786 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEERHNL 40 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~ag~ 40 (311) |.||+|+||||.||..+--.|..++.. ||.++.-++-.|. T Consensus 1 m~KV~IIGA~G~VG~s~A~~l~~~~~~~elvL~Di~~a~g~ 41 (313) T PTZ00325 1 MFKVAVLGAAGGIGQPLSLLLKRNPYVSTLSLYDIVGAPGV 41 (313) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHH T ss_conf 93899989998699999999983899777999808972668 No 36 >pfam03435 Saccharop_dh Saccharopine dehydrogenase. This family comprised of three structural domains that can not be separated in the linear sequence. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase. The saccharopine dehydrogenase can also function as a saccharopine reductase. Probab=98.04 E-value=4.3e-05 Score=50.72 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=72.4 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC-C--------CCCCC------------HHHHCCCCEEEECCCCHH Q ss_conf 999758867899999998629972-8999965300-7--------86006------------677479989999389837 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER-H--------NLRYR------------EDLLNAADVSILCLPDVA 61 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~-a--------g~~~~------------~~~~~~~Divf~a~p~~~ 61 (311) |-|+|| |.||+.+++.|.+|+.+ +++...-+.. + +.++. ...+++.|+|+.++|.-. T Consensus 1 IlvlGa-G~vG~~~~~~L~~~~~~~~i~vad~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~diVv~~~p~~~ 79 (384) T pfam03435 1 VLIIGA-GGVGQGVAPLLARHGDVDEITVADRSLEKAQALAAPKLGLRFIAIAVDADNYEALAALLKEGDLVINLAPPFL 79 (384) T ss_pred CEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCEEEECCCHHH T ss_conf 989897-7879999999972899886999989889989877523698538999577899999998712899999984341 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCH Q ss_conf 89999998612584898227630355543110021000477652049607725842113311 Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAI 123 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~ 123 (311) ....+..+.+.|+ -++|.|. ..++....+ +..+++++.+-++|=..+-+ T Consensus 80 ~~~i~~~c~~~g~--~yvd~s~----------~~~~~~~l~-~~a~~ag~~~~~~~G~~PGi 128 (384) T pfam03435 80 SLTVLKACIETGV--HYVDTSY----------LREAQLALH-EKAKEAGVTAVLGCGFDPGL 128 (384) T ss_pred CHHHHHHHHHCCC--CEEECCC----------CHHHHHHHH-HHHHHCCCEEEECCCCCCCH T ss_conf 6999999997399--7575343----------668899999-97765696899678889884 No 37 >PRK13304 L-aspartate dehydrogenase; Reviewed Probab=98.02 E-value=4.3e-05 Score=50.72 Aligned_cols=82 Identities=21% Similarity=0.215 Sum_probs=64.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC---------CCC-CC--HHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 907999758867899999998629-97289999653007---------860-06--677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH---------NLR-YR--EDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a---------g~~-~~--~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) |+||+|+|. |..|+.+.+.|.+- ..++|..+.++... +.. +. ++...++|+++=|++++.-++|++ T Consensus 1 M~rVgiIG~-GaIG~~Va~~l~~g~~~~~L~~V~~r~~~~a~~~a~~~~~~~~~~ld~l~~~~DlVVE~A~~~av~~~~~ 79 (265) T PRK13304 1 MLKIGIVGC-GAIANLITKAIDSGRINAELLAFYDRNLEKAENLAEKTGAPACLSIDELVKDVDLVVECASQKAVEDTVP 79 (265) T ss_pred CCEEEEECC-CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH T ss_conf 949999865-7899999999867998649999978987898877641599712798998338999998989899999999 Q ss_pred HHHHCCCCEEEECCCC Q ss_conf 9861258489822763 Q gi|254780294|r 68 LIKKNGINSRIIDTST 83 (311) Q Consensus 68 ~~~~~g~~~~vid~ss 83 (311) .+.++|++..+.+-+. T Consensus 80 ~~L~~G~dlvv~SvGA 95 (265) T PRK13304 80 KSLNNGKDVIIMSVGA 95 (265) T ss_pred HHHHCCCCEEEECHHH T ss_conf 9997599899981368 No 38 >COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism] Probab=97.98 E-value=4.2e-05 Score=50.82 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=90.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC--CCCCC--------C---------CCHHHHCCCCEEEECCCCHH Q ss_conf 07999758867899999998629-97289999653--00786--------0---------06677479989999389837 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE--ERHNL--------R---------YREDLLNAADVSILCLPDVA 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~--~~ag~--------~---------~~~~~~~~~Divf~a~p~~~ 61 (311) .||||+|. |..|..|+--+.+| -|.|..+.-+- .|-|. . +.--.|.++|+||-|+..++ T Consensus 5 ~kvaiigs-gni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~~ 83 (310) T COG4569 5 RKVAIIGS-GNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAGA 83 (310) T ss_pred CEEEEECC-CCCCHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCH T ss_conf 25999736-86208899999854786563048734888507788886198522447899983999877655885243203 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH Q ss_conf 89999998612584898227630355543110021000477652049607725842113311247888 Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL 129 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL 129 (311) -.+-++++.|.| .+.||+..+- --|+++|-+|.+..-..++-+.|+|-|--|++++.+..-. T Consensus 84 h~~~a~~~ae~g--i~~idltpaa----igp~vvp~~n~~eh~~a~nvnmvtcggqatipiv~avsrv 145 (310) T COG4569 84 HVKNAAALAEAG--IRLIDLTPAA----IGPYVVPVVNLEEHVDALNVNMVTCGGQATIPIVAAVSRV 145 (310) T ss_pred HHHHHHHHHHCC--CCEEECCHHC----CCCEECCCCCHHHHCCCCCCCEEEECCCCCEEEHHHHHHH T ss_conf 444057788649--8423056000----4872126546577458887525866682000111421363 No 39 >KOG4039 consensus Probab=97.98 E-value=6.8e-05 Score=49.52 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=52.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEE-EEEEECCC----CCCCCCC------------HHHHCCCCEEEECCCCH--- Q ss_conf 9079997588678999999986299728-99996530----0786006------------67747998999938983--- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC-LLSIPCEE----RHNLRYR------------EDLLNAADVSILCLPDV--- 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~-l~~l~s~~----~ag~~~~------------~~~~~~~Divf~a~p~~--- 60 (311) |.++-|+||||.+|++|++.+.+.|.|. ++.+.-++ -+++.+. ...+.+.|+.|.||+.. T Consensus 18 ~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgTTRgk 97 (238) T KOG4039 18 NMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGTTRGK 97 (238) T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 02247885355313899999885656206999973157984213645467832688888776502885689961135555 Q ss_pred ------------HHHHHHHHHHHCCCCEEE Q ss_conf ------------789999998612584898 Q gi|254780294|r 61 ------------ASLEIIQLIKKNGINSRI 78 (311) Q Consensus 61 ------------~s~~~~~~~~~~g~~~~v 78 (311) .-.+.++.+.+.||..+| T Consensus 98 aGadgfykvDhDyvl~~A~~AKe~Gck~fv 127 (238) T KOG4039 98 AGADGFYKVDHDYVLQLAQAAKEKGCKTFV 127 (238) T ss_pred CCCCCEEEECHHHHHHHHHHHHHCCCEEEE T ss_conf 566753761538888899998858970899 No 40 >PRK00048 dihydrodipicolinate reductase; Provisional Probab=97.84 E-value=0.00024 Score=46.12 Aligned_cols=109 Identities=19% Similarity=0.190 Sum_probs=71.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC-CCC--CCCCCC----------------HHHHCCCCEEEECCCCHH Q ss_conf 9079997588678999999986299728999965-300--786006----------------677479989999389837 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC-EER--HNLRYR----------------EDLLNAADVSILCLPDVA 61 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s-~~~--ag~~~~----------------~~~~~~~Divf~a~p~~~ 61 (311) |+||+|.||||--|+++++.+.+++.++|..... +.+ .|+.+. ++.+.++|+++=-...+. T Consensus 2 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~l~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~DVvIDFS~p~~ 81 (265) T PRK00048 2 MIKVGVAGASGRMGRELIEAVEAAEDLELVAALDRPGSPLVGQDAGELAGLGKLGVPITDDLEAVLDDFDVLIDFTTPEA 81 (265) T ss_pred CEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHCCCCEEEECCCHHH T ss_conf 45999988888779999999986899799999946897233653566527676784311789886055998998998899 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCC Q ss_conf 89999998612584898227630355543110021000477652049607725842113 Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYAT 120 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t 120 (311) +.+.+..+.+.+.. .||=-++ |-.+..- ++. +..++-.++-.||-+-- T Consensus 82 ~~~~~~~~~~~~~~-~ViGTTG-~~~~~~~-----~i~----~~s~~ipil~apNfSlG 129 (265) T PRK00048 82 TLENLEFALEHGKP-LVIGTTG-FTEEQLA-----ALR----EAAKKIPVVIAPNFSVG 129 (265) T ss_pred HHHHHHHHHHCCCC-EEEEECC-CCHHHHH-----HHH----HHCCCCCEEEECCHHHH T ss_conf 99999999974997-7996089-9989999-----999----74658878997855899 No 41 >pfam05368 NmrA NmrA-like family. NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Probab=97.82 E-value=0.00038 Score=44.93 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=51.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCC-------C-----C-----HHHHCCCCEEEECCCCHH--- Q ss_conf 99975886789999999862997289999653007--860-------0-----6-----677479989999389837--- Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLR-------Y-----R-----EDLLNAADVSILCLPDVA--- 61 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~-------~-----~-----~~~~~~~Divf~a~p~~~--- 61 (311) |.|.||||++|+.+++.|.++ ..+++.+..+.+. -+. + . ...++++|.+|+++|... T Consensus 1 IlV~GatG~iG~~vv~~L~~~-g~~Vr~l~R~~~~~~~~~l~~~gve~v~gD~~d~~sl~~al~gvd~v~~~~~~~~~~~ 79 (232) T pfam05368 1 ILVFGATGYQGGSVVRASLKA-GHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVEALKGVDVVFSVTGFWLSKE 79 (232) T ss_pred EEEECCCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCHH T ss_conf 099896828999999999858-9938999718736656666417988999068887899999679988999158874177 Q ss_pred ---HHHHHHHHHHCCCCEEE Q ss_conf ---89999998612584898 Q gi|254780294|r 62 ---SLEIIQLIKKNGINSRI 78 (311) Q Consensus 62 ---s~~~~~~~~~~g~~~~v 78 (311) .+.++..+.++|.+-+| T Consensus 80 ~~~~~~~~~AA~~aGVk~~V 99 (232) T pfam05368 80 IEDGKKLADAAKEAGVKHFI 99 (232) T ss_pred HHHHHHHHHHHHHCCCCCEE T ss_conf 99999999999973998345 No 42 >CHL00194 ycf39 Ycf39; Provisional Probab=97.76 E-value=0.0003 Score=45.52 Aligned_cols=116 Identities=16% Similarity=0.113 Sum_probs=64.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-----------------HHHHCCCCEEEECCCCHH--- Q ss_conf 079997588678999999986299728999965300786006-----------------677479989999389837--- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-----------------EDLLNAADVSILCLPDVA--- 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-----------------~~~~~~~Divf~a~p~~~--- 61 (311) .+|-|+||||++|+.+++.|.++- .+++.+.-+..+...+. ...+.++|.||.+.+... T Consensus 1 M~ILV~GATG~lGr~vVr~Ll~~G-~~Vr~lvRnp~ka~~l~~~Gve~v~gDl~dpesl~~Al~GvdaVi~~~~~~~~~~ 79 (319) T CHL00194 1 MSLLVIGATGTLGRQIVRRALDEG-YQVKCLVRNLRKAAFLKEWGAELVYGDLSLPETIPPALEGITAIIDASTSRPSDL 79 (319) T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCEEEEECCCCCCCC T ss_conf 979998998589999999999688-9089995786763234215967999427887789999659967999456677886 Q ss_pred ----------HHHHHHHHHHCCCCEEEECCCCCHHHH--HHHHHCCCCCC-HHHHHHCCCCEEEECCCCCCC Q ss_conf ----------899999986125848982276303555--43110021000-477652049607725842113 Q gi|254780294|r 62 ----------SLEIIQLIKKNGINSRIIDTSTAHRIA--PGWVYGFPEMD-KSQKEKIRSARYITNPGCYAT 120 (311) Q Consensus 62 ----------s~~~~~~~~~~g~~~~vid~ss~~R~~--~~vpl~vPEvN-~~~~~~~~~~~iIanPnC~~t 120 (311) ...++..+.++|.. ++|=.|. ..-+ +.+|+.--... +..++..--...|=.|+.+-- T Consensus 80 ~~~~~vd~~g~~~li~AAk~aGVk-r~V~lS~-lga~~~~~~p~~~~K~~~E~~L~~Sgl~~TIlRPs~F~q 149 (319) T CHL00194 80 NNAYQIDLEGKLALIEAAKAAKVK-RFIFFSI-LNAEQYPQVPLMKIKSDIEEKLKQSGINYTIFRLAGFFQ 149 (319) T ss_pred CHHHHHHHHHHHHHHHHHHHCCCC-EEEEECC-CCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCHHHHH T ss_conf 208898898899999999984998-8999613-566668875677879999999986799859984739999 No 43 >PRK08655 prephenate dehydrogenase; Provisional Probab=97.70 E-value=0.00028 Score=45.73 Aligned_cols=114 Identities=16% Similarity=0.197 Sum_probs=76.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------C---HHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 07999758867899999998629972899996530078600--------6---677479989999389837899999986 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------R---EDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------~---~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .||+|+|++|--||.|.++|... .+++.....+...++.+ . .+...++|+|++|.|-..+.+....+. T Consensus 1 mkI~IIGG~G~MG~~Fa~~f~~s-GyeV~I~gRd~~k~~~va~~LGv~~~~~~~e~~~~advVIvsVPI~~T~~VI~~la 79 (441) T PRK08655 1 MKISIIGGTGGLGKWFARFLKDK-GYEVIVWGRDPKKGKEVAKELGVEYASDNIDAAKDGDIVIVSVPINVTEDVIREVA 79 (441) T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHH T ss_conf 97999947981779999999867-98899981573135678887386222447889724999999848899999999974 Q ss_pred H-CCCCEEEECCCCCHH-----HH----HHHHHC--CCCCCHHHHHHCCCCEEEECCCC Q ss_conf 1-258489822763035-----55----431100--21000477652049607725842 Q gi|254780294|r 71 K-NGINSRIIDTSTAHR-----IA----PGWVYG--FPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 71 ~-~g~~~~vid~ss~~R-----~~----~~vpl~--vPEvN~~~~~~~~~~~iIanPnC 117 (311) . .-.++.+.|.+|--. |. .++|.+ -|-.-| ....+.++.+|-+|.= T Consensus 80 P~l~~~~lL~DitSvK~~p~~aMl~~~~~~~~viglHPMFGP-~v~sl~gQvVVvcP~~ 137 (441) T PRK08655 80 PHVKEGSLLMDVTSVKERPVEAMKEFAPEGVEILPTHPMFGP-RTPSLRGQVVILTPTE 137 (441) T ss_pred CCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCEECCCCCCCC-CCCCCCCCEEEEECCC T ss_conf 248999699983104177999999756578877454888799-9866578889996389 No 44 >PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Probab=97.64 E-value=0.00024 Score=46.07 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=35.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC Q ss_conf 9079997588678999999986299-72899996530078 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN 39 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag 39 (311) |.||+|+|+||-+|+..++++.++| .|++..++..+... T Consensus 1 mk~i~IlGsTGSIG~~tL~Vi~~~~~~f~v~~lsa~~n~~ 40 (379) T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRHPDRFRVVALSAGSNVE 40 (379) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEECCCHH T ss_conf 9789998569588899999999586875899999289799 No 45 >PRK13302 putative L-aspartate dehydrogenase; Provisional Probab=97.63 E-value=0.00089 Score=42.60 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=64.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC---------CCC--C--CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 07999758867899999998629-97289999653007---------860--0--6677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH---------NLR--Y--REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a---------g~~--~--~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .||+|+|. |..|+.+.+.|.+. +.++|..+..+.-. +.+ + -++....+|+++=|++++.-++|++ T Consensus 7 mrVgliG~-GaIG~~va~~l~~g~~~~~l~~V~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVVE~A~~~av~~~~~ 85 (271) T PRK13302 7 LRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIVE 85 (271) T ss_pred CEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCEEEECCCHHHHHHHHH T ss_conf 77999886-78999999999758998189999928878889998735898740788996018999998989899999999 Q ss_pred HHHHCCCCEEEECCCC Q ss_conf 9861258489822763 Q gi|254780294|r 68 LIKKNGINSRIIDTST 83 (311) Q Consensus 68 ~~~~~g~~~~vid~ss 83 (311) .+.++|.+..+.+-+. T Consensus 86 ~~L~~G~dlvv~SvGA 101 (271) T PRK13302 86 PVLAAGKKAIVLSVGA 101 (271) T ss_pred HHHHCCCCEEEECHHH T ss_conf 9997599789975579 No 46 >PRK08507 prephenate dehydrogenase; Validated Probab=97.61 E-value=0.00054 Score=43.94 Aligned_cols=84 Identities=25% Similarity=0.273 Sum_probs=64.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCC----------CCCCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 07999758867899999998629-972899996530078----------6006677479989999389837899999986 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHN----------LRYREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag----------~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .||+|||. |+.|.=|-+-|.+. +..++..+..++..- .....+.+.++|++|+|+|-+...++.+.+. T Consensus 1 M~I~IiGl-GLiGgSla~alk~~~~~~~V~g~d~~~~~~~~A~~~g~id~~~~~~~i~~aDlVila~Pv~~~~~~l~~l~ 79 (275) T PRK08507 1 MKIGIIGL-GLMGGSLGLALKENKLISCVYGYDHNEEHEKDALDLGLVDEIVEFEEIKECDVIFLAIPVDAIIEILQKLL 79 (275) T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCCCCCHHHCCCCCEEEEECCHHHHHHHHHHHH T ss_conf 98999900-87899999999950998679999599999999998699861067312365798999176999999999986 Q ss_pred HCCCCEEEECCCCCHH Q ss_conf 1258489822763035 Q gi|254780294|r 71 KNGINSRIIDTSTAHR 86 (311) Q Consensus 71 ~~g~~~~vid~ss~~R 86 (311) ....++.|.|-+|--. T Consensus 80 ~l~~~~iitDv~SvK~ 95 (275) T PRK08507 80 DIKENTTIIDLGSTKA 95 (275) T ss_pred HCCCCCEEEECCCHHH T ss_conf 0467888983431289 No 47 >TIGR01921 DAP-DH diaminopimelate dehydrogenase; InterPro: IPR010190 This entry represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine biosynthesis in Corynebacterium, Bacterioides, Porphyromonas and other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterised .. Probab=97.59 E-value=9e-05 Score=48.77 Aligned_cols=114 Identities=24% Similarity=0.344 Sum_probs=76.5 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-CC-----------CHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 907--9997588678999999986299728999965300786-00-----------667747998999938983789999 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-RY-----------REDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-~~-----------~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) |.| +||||= |..|+-..++|.+.|++||..+.+++.+.. .+ .+...+++|+.|+|.|+..-.++. T Consensus 1 M~kiRaaIVGY-GNlG~~V~~ai~~~PDmElvgv~~Rrd~~t~~va~~~~vy~V~~~~K~~~dvdv~iLC~gsatd~pe~ 79 (326) T TIGR01921 1 MSKIRAAIVGY-GNLGKSVEEAIQQAPDMELVGVFRRRDAETLDVAEELAVYAVVEDEKELEDVDVLILCTGSATDLPEQ 79 (326) T ss_pred CCEEEEEEECC-CCHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCC T ss_conf 97057888622-32007999998408980489988707887576112252022222232028825999738864555434 Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCC---EEEE---CCCCCCCCCHH Q ss_conf 9986125848982276303555431100210004776520496---0772---58421133112 Q gi|254780294|r 67 QLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSA---RYIT---NPGCYATGAIA 124 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~---~iIa---nPnC~~t~~~l 124 (311) .-..+.+.++ ||.=-.|| .+|+.-.--=+..+++ -+|+ -||.+++.=+| T Consensus 80 ~p~fA~~~nT--vDsfD~H~-------~Ip~~r~~~DaaA~~~g~VSvis~GWDPG~fSi~Rv~ 134 (326) T TIGR01921 80 KPYFAAFINT--VDSFDIHT-------DIPDLRRTLDAAAKEAGAVSVISAGWDPGLFSINRVL 134 (326) T ss_pred CCCCEEEEEC--CCCCCCCC-------CHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH T ss_conf 5100122101--23650224-------2078999999999861987899834788726799999 No 48 >pfam01113 DapB_N Dihydrodipicolinate reductase, N-terminus. Dihydrodipicolinate reductase (DapB) reduces the alpha,beta-unsaturated cyclic imine, dihydro-dipicolinate. This reaction is the second committed step in the biosynthesis of L-lysine and its precursor meso-diaminopimelate, which are critical for both protein and cell wall biosynthesis. The N-terminal domain of DapB binds the dinucleotide NADPH. Probab=97.59 E-value=0.00087 Score=42.67 Aligned_cols=80 Identities=26% Similarity=0.303 Sum_probs=55.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CCCCC--------------HHHHCCCCEEEECCCCHHHHH Q ss_conf 0799975886789999999862997289999653007---86006--------------677479989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NLRYR--------------EDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~~~~--------------~~~~~~~Divf~a~p~~~s~~ 64 (311) +||+|.||+|-.|+++++.+.+++.++|.....+... |+.+. +..+.++|+++=-.-.+.+.+ T Consensus 1 ikV~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~DVvIDFS~p~~~~~ 80 (122) T pfam01113 1 IKVAVVGASGRMGRELIKAILEAPDFELVAAVDRPGSSLLGSDAGELAGPLGVPVTDDLEEVLADADVLIDFTTPEATLE 80 (122) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEECCCHHHHCCCCCEEEEECCHHHHHH T ss_conf 98999889887899999999858996899999438961225431001467871112447775157888999068789999 Q ss_pred HHHHHHHCCCCEEEECCC Q ss_conf 999986125848982276 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTS 82 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~s 82 (311) .+..+.+.|.. .|+=-+ T Consensus 81 ~~~~~~~~~~~-~ViGTT 97 (122) T pfam01113 81 NLELALKHGKP-LVIGTT 97 (122) T ss_pred HHHHHHHCCCC-EEEECC T ss_conf 99999967998-899899 No 49 >PRK11579 putative oxidoreductase; Provisional Probab=97.51 E-value=0.001 Score=42.27 Aligned_cols=78 Identities=14% Similarity=0.242 Sum_probs=60.1 Q ss_pred CEEEEECCCCHHHHH-HHHHHHCCCCEEEEEEECCCC--C-----CCC-CC--HHHHC--CCCEEEECCCCHHHHHHHHH Q ss_conf 079997588678999-999986299728999965300--7-----860-06--67747--99899993898378999999 Q gi|254780294|r 2 YKIFIDGEHGTTGLK-IRSRIVQRKDLCLLSIPCEER--H-----NLR-YR--EDLLN--AADVSILCLPDVASLEIIQL 68 (311) Q Consensus 2 ~kVaIvGATG~vG~~-li~lL~~hp~~~l~~l~s~~~--a-----g~~-~~--~~~~~--~~Divf~a~p~~~s~~~~~~ 68 (311) +||||||+ |..|+. -++.|.++|.++|..+++... + |.+ ++ ++.+. ++|+|.-|+|+..-.+++.. T Consensus 5 irvgiiG~-G~~~~~~h~~~~~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~ll~~~~id~V~i~tp~~~H~~~~~~ 83 (346) T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPGLELAAVSSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKA 83 (346) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCEECCHHHHHCCCCCCEEEECCCCHHHHHHHHH T ss_conf 75999936-29999999999962999199999798999995025899538999999459999999997996789999999 Q ss_pred HHHCCCCEEEECC Q ss_conf 8612584898227 Q gi|254780294|r 69 IKKNGINSRIIDT 81 (311) Q Consensus 69 ~~~~g~~~~vid~ 81 (311) +.++|..+ .+.. T Consensus 84 al~aGkhv-~~EK 95 (346) T PRK11579 84 ALEAGKHV-VVDK 95 (346) T ss_pred HHHCCCCE-EECC T ss_conf 99879948-9538 No 50 >PRK13301 putative L-aspartate dehydrogenase; Provisional Probab=97.49 E-value=0.0012 Score=41.72 Aligned_cols=82 Identities=12% Similarity=0.067 Sum_probs=60.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC------CCC-----CCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 907999758867899999998629--9728999965300------786-----006677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER------HNL-----RYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~------ag~-----~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) |.||+|+|. |..|+++.+.|... +..++..+..... +++ .+.+..-.++|+++=|++++.-++|++ T Consensus 2 ~~rVgiiG~-GAIG~~Va~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lla~~pDlVvE~As~~Av~~~a~ 80 (267) T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE 80 (267) T ss_pred CEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCHHHHHHHHH T ss_conf 517999851-6999999999861777652899981533555555325665457757774128999998979899999999 Q ss_pred HHHHCCCCEEEECCCC Q ss_conf 9861258489822763 Q gi|254780294|r 68 LIKKNGINSRIIDTST 83 (311) Q Consensus 68 ~~~~~g~~~~vid~ss 83 (311) ...++|++..+.+-+. T Consensus 81 ~vL~~G~dlvv~SvGA 96 (267) T PRK13301 81 GCLTAGLDMIICSAGA 96 (267) T ss_pred HHHHCCCCEEEECHHH T ss_conf 9997599699982378 No 51 >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=97.45 E-value=0.0017 Score=40.91 Aligned_cols=40 Identities=13% Similarity=0.027 Sum_probs=31.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCCCCC Q ss_conf 0799975886789999999862997-289999653007860 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERHNLR 41 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~ag~~ 41 (311) .||+|+||+|.||..+--+|...+. .||.++.-.+-.|+. T Consensus 1 mKV~IIGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~g~a 41 (310) T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVA 41 (310) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH T ss_conf 98999999981899999999729997769998277426675 No 52 >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] Probab=97.44 E-value=0.0016 Score=41.08 Aligned_cols=106 Identities=20% Similarity=0.243 Sum_probs=67.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC---CCCC-------------CCCH---HHHCCCCEEE-ECCCCH Q ss_conf 907999758867899999998629972899996530---0786-------------0066---7747998999-938983 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE---RHNL-------------RYRE---DLLNAADVSI-LCLPDV 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~---~ag~-------------~~~~---~~~~~~Divf-~a~p~~ 60 (311) |+||+|+||+|=.||++++.+.+.|..+|...-.+. +.|+ .+.+ ....+.|+++ |..| + T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P-~ 80 (266) T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP-E 80 (266) T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHCCCCCCCCEEECCHHHCCCCCCEEEECCCC-H T ss_conf 736999757872789999998528994699998137842234311232144655733206343304689889989982-5 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf 7899999986125848982276303555431100210004776520496077258421 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) .+.+.+..+.+.|.. .||=.++ |--+. -....+..++-+++=.||-+ T Consensus 81 ~~~~~l~~~~~~~~~-lVIGTTG-f~~e~---------~~~l~~~a~~v~vv~a~NfS 127 (266) T COG0289 81 ATLENLEFALEHGKP-LVIGTTG-FTEEQ---------LEKLREAAEKVPVVIAPNFS 127 (266) T ss_pred HHHHHHHHHHHCCCC-EEEECCC-CCHHH---------HHHHHHHHHHCCEEEECCCH T ss_conf 469999999976998-6997999-99899---------99999998538989965640 No 53 >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] Probab=97.40 E-value=0.001 Score=42.21 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=78.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC-CCC---------CC--CHHHHCCCCEEEECCCCHHHHHHHHH Q ss_conf 079997588678999999986299-728999965300-786---------00--66774799899993898378999999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER-HNL---------RY--REDLLNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~-ag~---------~~--~~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311) .+|+|||. |..|+.+++++.+-| .+|+..+.-+.. .-+ .. -++...+.|+++=|+.++.-++|+++ T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~ 79 (255) T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPK 79 (255) T ss_pred CEEEEEEC-CHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHH T ss_conf 95789823-37889999998668864369999448878888888603887635677773024425430788999998699 Q ss_pred HHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHH Q ss_conf 8612584898227630355543110021000477652049607725842113311247888 Q gi|254780294|r 69 IKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPL 129 (311) Q Consensus 69 ~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL 129 (311) +.++|+++.|.+-+. +- |++.-..+-|+- ..-++++-.-+|. +.-+-+|+.+ T Consensus 80 ~L~~g~d~iV~SVGA-La-d~~l~erl~~la-----k~~~~rv~~pSGA--iGGlD~l~aa 131 (255) T COG1712 80 ILKAGIDVIVMSVGA-LA-DEGLRERLRELA-----KCGGARVYLPSGA--IGGLDALAAA 131 (255) T ss_pred HHHCCCCEEEEECHH-CC-CHHHHHHHHHHH-----HCCCCEEEECCCC--CHHHHHHHHH T ss_conf 996599889995122-06-867999999998-----5389479933764--0127888874 No 54 >PRK05086 malate dehydrogenase; Provisional Probab=97.39 E-value=0.0022 Score=40.22 Aligned_cols=39 Identities=13% Similarity=0.063 Sum_probs=29.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCE-EEEEEECCCCC-CC Q ss_conf 07999758867899999998629-972-89999653007-86 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDL-CLLSIPCEERH-NL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~-~l~~l~s~~~a-g~ 40 (311) .||+|+||||.||+.+--+|..+ +.. ||.++.-.+.+ |+ T Consensus 1 mKV~IiGA~G~VG~s~A~~l~~~~~~~~el~L~Di~~~~~G~ 42 (312) T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGV 42 (312) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCH T ss_conf 989999899869999999998289877749997588886105 No 55 >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox Probab=97.35 E-value=0.0031 Score=39.27 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=41.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC----CCCCC-------------------CHHHHCCCCEEEECC Q ss_conf 079997588678999999986299-728999965300----78600-------------------667747998999938 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER----HNLRY-------------------REDLLNAADVSILCL 57 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~----ag~~~-------------------~~~~~~~~Divf~a~ 57 (311) .||+|+||+|.||..+.-.|..++ .-||.++.-.+. .|+.. .-+.++++|+++.++ T Consensus 1 mKV~IiGAaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~d~~~~~daDivVitA 80 (309) T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA 80 (309) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECC T ss_conf 98999999976999999999837998759996055643423112355450343368876798279889968999999878 Q ss_pred CC Q ss_conf 98 Q gi|254780294|r 58 PD 59 (311) Q Consensus 58 p~ 59 (311) +. T Consensus 81 G~ 82 (309) T cd05294 81 GV 82 (309) T ss_pred CC T ss_conf 98 No 56 >pfam03446 NAD_binding_2 NAD binding domain of 6-phosphogluconate dehydrogenase. The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Probab=97.34 E-value=0.0006 Score=43.65 Aligned_cols=80 Identities=24% Similarity=0.213 Sum_probs=54.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-------C---HHHHCCCCEEEECCCCHHHHHHH-H-- Q ss_conf 907999758867899999998629972899996530078600-------6---67747998999938983789999-9-- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY-------R---EDLLNAADVSILCLPDVASLEII-Q-- 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~-------~---~~~~~~~Divf~a~p~~~s~~~~-~-- 67 (311) |.|||+||- |.-|..|.+-|.++ .+++....-+.++-+++ . .+..+++|++|+|+|++..-+-+ . T Consensus 1 M~~Ig~IGl-G~MG~~ma~~L~~~-g~~v~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvIi~~l~~~~~v~~V~~~~ 78 (163) T pfam03446 1 MAKIGFIGL-GVMGSPMALNLLKA-GYTVTVYNRTPEKVEELVAEGAVAAASPAEAAASADVVITMVPAGAAVDAVIFGE 78 (163) T ss_pred CCEEEEEEE-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCEECCCHHHHHHCCCEEEEECCCHHHHHEEECCC T ss_conf 988999836-79899999999977-9969999797887799998399553999999861999999258714540220263 Q ss_pred ----HHHHCCCCEEEECCCCC Q ss_conf ----98612584898227630 Q gi|254780294|r 68 ----LIKKNGINSRIIDTSTA 84 (311) Q Consensus 68 ----~~~~~g~~~~vid~ss~ 84 (311) .....| ..+||.|.- T Consensus 79 ~gl~~~~~~g--~iiid~sT~ 97 (163) T pfam03446 79 DGLLPGLKPG--DIIIDGSTI 97 (163) T ss_pred CCHHHHCCCC--CEEEECCCC T ss_conf 1332313589--889867989 No 57 >PRK11880 pyrroline-5-carboxylate reductase; Reviewed Probab=97.32 E-value=0.0018 Score=40.79 Aligned_cols=151 Identities=15% Similarity=0.126 Sum_probs=83.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCC--------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 907999758867899999998629--97289999653007--------8600---6677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERH--------NLRY---REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~a--------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) |.||+++|+ |--|+.+++=|.++ +..++....-+... |..+ ..+...++|++|+|.......+..+ T Consensus 2 m~kI~~IG~-G~Mg~Aii~gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~v~~~~~~~~~~~~~diIiLaVKP~~~~~vl~ 80 (267) T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEDVLS 80 (267) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCEEECCHHHHHHCCCEEEEEECHHHHHHHHH T ss_conf 987999866-8999999999997798945289977999999999997396785786988721999999728789999999 Q ss_pred HHHHCCCCEEEECCCCCHHHH---------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC-CCC Q ss_conf 986125848982276303555---------4311002100047765204960772584211331124788888503-455 Q gi|254780294|r 68 LIKKNGINSRIIDTSTAHRIA---------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL-LPD 137 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~~R~~---------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~-i~~ 137 (311) .+.... +..||+.-+-...+ ..+.=+.|=++....+.. +.+.+++++........- .|+...+ ... T Consensus 81 ~l~~~~-~~~iISv~AGi~i~~l~~~l~~~~~ivR~MPN~~~~v~~G~--t~i~~~~~~~~~~~~~v~-~lf~~~G~~~~ 156 (267) T PRK11880 81 ELKGSL-DKLVVSIAAGITLARLERALGADLPVVRAMPNTPALVGAGM--TALCANALVSEEQRAFAL-ELLSAVGEVVW 156 (267) T ss_pred HHHHHH-CCEEEEECCCCCHHHHHHHHCCCCHHHHCCCCHHHHHCCCC--EEEECCCCCCHHHHHHHH-HHHHHCCCEEE T ss_conf 987650-87899916999999999886368703420874899970786--466259999999999999-99972586799 Q ss_pred CC-CEEEEEECCCCCCCCCC Q ss_conf 65-02676512333356100 Q gi|254780294|r 138 RY-PITINAVSGYTGGGKKL 156 (311) Q Consensus 138 ~~-~~~~~~~sg~sgaG~~~ 156 (311) +. -..+++.++.+|.|..- T Consensus 157 v~~E~~~d~~TalsGsGPAy 176 (267) T PRK11880 157 VDDESQMDAVTAVSGSGPAY 176 (267) T ss_pred ECCHHCCCHHHHHHCCCHHH T ss_conf 88421022113451771799 No 58 >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated Probab=97.30 E-value=0.0016 Score=41.09 Aligned_cols=112 Identities=15% Similarity=0.203 Sum_probs=67.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------C------CCCCC---------HHHHCCCCEEEEC Q ss_conf 9079997588678999999986299728999965300---------7------86006---------6774799899993 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------H------NLRYR---------EDLLNAADVSILC 56 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------a------g~~~~---------~~~~~~~Divf~a 56 (311) |.||+|+|| |.=|..|-.+|.+. ..++....-++. . |.++. ++..+++|++|+| T Consensus 1 MmkI~ViGa-GawGtAlA~~la~n-~~~V~lw~r~~~~~~~In~~~~n~~ylp~i~L~~nI~~t~dl~~~l~~ad~iiia 78 (325) T PRK00094 1 MMKIAVLGA-GSWGTALAILLARN-GHDVVLWGRDPEHAAEINTDRENPRYLPGIKLPDNLRATSDLAEALADADLILVA 78 (325) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEE T ss_conf 988999898-99999999999978-9978999838999999996498865689785899838978999998379849994 Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf 89837899999986125-8489822763035554311002100047765204960772584 Q gi|254780294|r 57 LPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 57 ~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) +|+..-+++...+.+.- ....+|..+.-+ +++--..+.|+-.+.+..-..-..++.|+ T Consensus 79 vPs~~~~~~l~~i~~~i~~~~~li~~tKGl--e~~t~~~~seii~~~l~~~~~~~~lsGP~ 137 (325) T PRK00094 79 VPSHAFREVLKQLKPLLRPDAPIVWATKGI--EAGTGKLLSEVAEEELPDQAPLAVLSGPS 137 (325) T ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEEECCE--ECCCCCCHHHHHHHHCCCCCCEEEEECCC T ss_conf 576999999999986468997499976556--24887519999999739998679981774 No 59 >PRK07502 cyclohexadienyl dehydrogenase; Validated Probab=97.26 E-value=0.0015 Score=41.27 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=60.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCC---------CCC---HHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 907999758867899999998629-9728999965300786---------006---677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNL---------RYR---EDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~---------~~~---~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) +.||+|||. |+.|.=+-+-|.++ +..++..+..+...-+ .+. .+.+.++|++|+|+|-+...++.. T Consensus 6 f~~I~IiGl-GLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~~~~~DlIilatPv~~~~~vl~ 84 (307) T PRK07502 6 FDRVALIGL-GLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAA 84 (307) T ss_pred CCEEEEEEE-CHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHHHCCCCEEEEECCHHHHHHHHH T ss_conf 566899927-8799999999985499857999849999999999869975112777664045897999178999999999 Q ss_pred HHHHC-CCCEEEECCCCCHH Q ss_conf 98612-58489822763035 Q gi|254780294|r 68 LIKKN-GINSRIIDTSTAHR 86 (311) Q Consensus 68 ~~~~~-g~~~~vid~ss~~R 86 (311) .+... ..++.|.|.+|.-. T Consensus 85 ~l~~~l~~~~ivTDvgSvK~ 104 (307) T PRK07502 85 EIAPHLKPGAIVTDVGSVKA 104 (307) T ss_pred HHHHHCCCCCEEEECCCCHH T ss_conf 99855589968996632118 No 60 >PRK10206 putative dehydrogenase; Provisional Probab=97.24 E-value=0.0031 Score=39.26 Aligned_cols=82 Identities=12% Similarity=0.219 Sum_probs=59.3 Q ss_pred CCEEEEECCCCHHHHHH-HHHHHCC-CCEEEEEEECCCCCCCC----C------C--HHHH--CCCCEEEECCCCHHHHH Q ss_conf 90799975886789999-9998629-97289999653007860----0------6--6774--79989999389837899 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKI-RSRIVQR-KDLCLLSIPCEERHNLR----Y------R--EDLL--NAADVSILCLPDVASLE 64 (311) Q Consensus 1 M~kVaIvGATG~vG~~l-i~lL~~h-p~~~l~~l~s~~~ag~~----~------~--~~~~--~~~Divf~a~p~~~s~~ 64 (311) ++||||||- |+.|+.+ +-.|..+ +.+++..+.+++..-++ + . ++.+ .++|+|+.|+|+..=.+ T Consensus 2 ~irvaiiG~-G~~~~~fH~P~i~~~~~~~~v~~v~~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~id~V~i~tP~~~H~~ 80 (345) T PRK10206 2 VINCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFE 80 (345) T ss_pred EEEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHCCCCCEECCHHHHHCCCCCCEEEECCCCHHHHH T ss_conf 247999926-4999999899996389957999997887618888877699812289999954999999998799578999 Q ss_pred HHHHHHHCCCCEEEECCCCC Q ss_conf 99998612584898227630 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~ss~ 84 (311) ++.++.++|.. ++++.--+ T Consensus 81 ~a~~al~aGkh-V~~EKP~~ 99 (345) T PRK10206 81 YAKRALEAGKN-VLVEKPFT 99 (345) T ss_pred HHHHHHHCCCC-EEEECCCC T ss_conf 99999978992-89803664 No 61 >pfam00056 Ldh_1_N lactate/malate dehydrogenase, NAD binding domain. L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Probab=97.24 E-value=0.0041 Score=38.51 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=40.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCCC Q ss_conf 07999758867899999998629972-8999965300--78600------------------66774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER--HNLRY------------------REDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p~ 59 (311) .||+|+||.|.||..+--.|..++.. ||.++.-.+. .|+.+ ..++++++|+++.+++. T Consensus 1 mKV~IIGagg~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~~~~~~~daDiVVitaG~ 79 (142) T pfam00056 1 VKVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGGDDYEALKDADVVVITAGV 79 (142) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCCHHHHCCCCEEEEECCC T ss_conf 9899989877899999999974796634788505776411799998614434788769748838883789999981577 No 62 >pfam00044 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Probab=97.22 E-value=0.0024 Score=39.97 Aligned_cols=110 Identities=15% Similarity=0.125 Sum_probs=81.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-------------C---CCC---------------------- Q ss_conf 07999758867899999998629972899996530078-------------6---006---------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN-------------L---RYR---------------------- 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag-------------~---~~~---------------------- 43 (311) +||||=|= |=.|+-++|.+.++|.+++.++-...+.. + +++ T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~i~iv~INd~~~~~~~a~LlkyDS~hG~~~~~v~~~~~~i~i~g~~I~~~~~~~p~ 79 (150) T pfam00044 1 IKVGINGF-GRIGRLVLRAALAQDDLEVVAINDLTDPETLAYLLKYDSVHGRFDGEVEVDEDGLIVNGKKIKVFAERDPA 79 (150) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEECCCEEEECCEEEEEEECCCCC T ss_conf 98989778-68999999999768996799985479999999998413546886986426398089999578999548955 Q ss_pred HHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 6774--7998999938983789999998612584898227630355543110021000477652049607725842 Q gi|254780294|r 44 EDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 44 ~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) +..+ .++|+|+=|+|.-.+++-+....++|.+.++++.-+ .++..|-+|+.+|.+.++. ..++|+|-=| T Consensus 80 ~i~W~~~gvDiViEcTG~f~~~~~~~~hl~~GaKkViiSaP~---~d~~~~tiV~GVN~~~~~~--~~~iiS~ASC 150 (150) T pfam00044 80 ELPWGELGVDIVVESTGVFTTAEKAEAHLKAGAKKVIISAPA---KDDADPTFVYGVNHDDYDP--EDDIVSNASC 150 (150) T ss_pred CCCCCCCCCCEEEEECCEEEEHHHHHHHHHCCCCEEEEECCC---CCCCCCEEEECCCHHHCCC--CCCEEECCCC T ss_conf 286243547889980432402887777875798779995799---8886778997767656799--8898968889 No 63 >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] Probab=97.21 E-value=0.0045 Score=38.26 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=83.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC-CCC----------CCC--HHHHC--CCCEEEECCCCHHHHH Q ss_conf 90799975886789999999862997-28999965300-786----------006--67747--9989999389837899 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER-HNL----------RYR--EDLLN--AADVSILCLPDVASLE 64 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~-ag~----------~~~--~~~~~--~~Divf~a~p~~~s~~ 64 (311) |+||||||+.|..++..+..+.+.+. +++..+++... ..+ .+. ++.++ ++|+|+-|+|+..=.+ T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~~ 82 (342) T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAE 82 (342) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCHHHHH T ss_conf 32799989876788888999973887469999964998999999998199745299999945999988999698067799 Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEE Q ss_conf 999986125848982276303555431100210004776520496077258421133112478888850345565026 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPIT 142 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~ 142 (311) ++.++.++|.. +.+..--+.-.++-- |+-.-..+ .+..+--.-+-.=.+....++-|.+.+.+-++..+. T Consensus 83 ~a~~AL~aGkh-Vl~EKPla~t~~ea~-----~l~~~a~~--~g~~l~v~~~~Rf~p~~~~~k~li~~g~iG~i~~~~ 152 (342) T COG0673 83 LALAALEAGKH-VLCEKPLALTLEEAE-----ELVELARK--AGVKLMVGFNRRFDPAVQALKELIDSGALGEVVSVQ 152 (342) T ss_pred HHHHHHHCCCE-EEEECCCCCCHHHHH-----HHHHHHHH--CCCEEEEEEHHHCCHHHHHHHHHHHCCCCCCEEEEE T ss_conf 99999977996-999289989999999-----99999997--599499988465498999999998659874159999 No 64 >PRK06545 prephenate dehydrogenase; Validated Probab=97.17 E-value=0.0019 Score=40.51 Aligned_cols=84 Identities=14% Similarity=0.196 Sum_probs=64.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC-------CC--CCC---HHHHCCCCEEEECCCCHHHHHHHHH Q ss_conf 07999758867899999998629-97289999653007-------86--006---6774799899993898378999999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH-------NL--RYR---EDLLNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a-------g~--~~~---~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311) .+|+|+|. |+.|.=+-+-|.++ +..++.-...+... |. ... ++...++|++|+|+|-+...++... T Consensus 1 k~V~IiGl-GLIGgSlalalk~~g~~~~i~~~d~~~~~l~~A~~~g~id~~~~~~~~~~~~~DlVvlatPv~~~~~~l~~ 79 (357) T PRK06545 1 KTVLIVGL-GLIGGSLALAIKAAGPDVFIIGYDPSGAQLARALGFGVIDELAEDLARAAAEADLIVLAVPVDATAALLAE 79 (357) T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCHHHHCCCCCEEEECCCHHHHHHHHHH T ss_conf 97999977-87899999999854997699996699999999986899773048876715679999994999999999999 Q ss_pred HHHCCCCEEEECCCCCHH Q ss_conf 861258489822763035 Q gi|254780294|r 69 IKKNGINSRIIDTSTAHR 86 (311) Q Consensus 69 ~~~~g~~~~vid~ss~~R 86 (311) +.....++.|.|-+|--. T Consensus 80 l~~l~~~~ivTDVgSvK~ 97 (357) T PRK06545 80 LADLAPGVIVTDVGSVKG 97 (357) T ss_pred HHHCCCCCEEEECCCCHH T ss_conf 872389978997510079 No 65 >pfam01408 GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold. This family of enzymes utilize NADP or NAD. This family is called the GFO/IDH/MOCA family in swiss-prot. Probab=97.15 E-value=0.0027 Score=39.65 Aligned_cols=77 Identities=16% Similarity=0.219 Sum_probs=57.4 Q ss_pred CEEEEECCCCHHHHHHHHHHH-CCCCEEEEEEECCCC-CCCCC---------C--HHHH--CCCCEEEECCCCHHHHHHH Q ss_conf 079997588678999999986-299728999965300-78600---------6--6774--7998999938983789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSIPCEER-HNLRY---------R--EDLL--NAADVSILCLPDVASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l~s~~~-ag~~~---------~--~~~~--~~~Divf~a~p~~~s~~~~ 66 (311) +||||+|+ |..|+..++-+. ..|.+++..+++... .-+.+ . ++.+ .++|+++.|+|++.-.+++ T Consensus 1 iki~iiG~-G~~g~~~~~~~~~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iD~v~I~tp~~~H~~~~ 79 (120) T pfam01408 1 LRVGIVGA-GKIGRRHLRALNESQDGAELVGVLDPDPARAEAVAESFGVPAYSDLEELLADPDVDAVSVATPPGLHFELA 79 (120) T ss_pred CEEEEEEC-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCEECCHHHHHHCCCCCEEEECCCHHHHHHHH T ss_conf 98999907-79999999999855999789999829999999999983996788699997377889899908746189999 Q ss_pred HHHHHCCCCEEEEC Q ss_conf 99861258489822 Q gi|254780294|r 67 QLIKKNGINSRIID 80 (311) Q Consensus 67 ~~~~~~g~~~~vid 80 (311) ..+.++|..+ .+. T Consensus 80 ~~~l~~g~~v-~~E 92 (120) T pfam01408 80 LAALEAGKHV-LVE 92 (120) T ss_pred HHHHHHCCEE-EEE T ss_conf 9999819989-996 No 66 >PTZ00117 malate dehydrogenase; Provisional Probab=97.15 E-value=0.0051 Score=37.90 Aligned_cols=58 Identities=19% Similarity=0.107 Sum_probs=41.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCCC Q ss_conf 90799975886789999999862997289999653007--8600-------------------66774799899993898 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLPD 59 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p~ 59 (311) |.||+|+|| |.||+.+--+|..+...||.++.-.+.. |+.. +-++.+++|+++.+++. T Consensus 1 M~KV~IIGa-G~VG~~~A~~l~~~~~~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~i~~~~dy~~~~daDiVVitAG~ 79 (313) T PTZ00117 1 MKKISIIGS-GQIGAIVGLLLLQENLGDVYLYDVIEGVPQGKALDLKHFSTIIGVNANILGTNNYEDIKDSDVIVITAGV 79 (313) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEECCCC T ss_conf 978999897-9899999999970899879999588983088998877242036898579837999996899999989899 No 67 >smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold. Probab=97.08 E-value=0.0063 Score=37.33 Aligned_cols=109 Identities=16% Similarity=0.194 Sum_probs=79.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------------CC-----------------CCC-------- Q ss_conf 0799975886789999999862997289999653007-------------86-----------------006-------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------------NL-----------------RYR-------- 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------------g~-----------------~~~-------- 43 (311) +||||=|= |=.|+-++|.+.++|.+++..+....+. |+ ++. T Consensus 1 ikIgINGf-GRIGR~v~R~~~~~~~~~vv~INd~~~~~~~a~Ll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~~p~ 79 (149) T smart00846 1 IKVGINGF-GRIGRLVLRALLERPDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERDPA 79 (149) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCEEECCEEEECCEEEEEECCCCCC T ss_conf 98989778-78999999999768995899845777689999998532436886886326088089999576423058965 Q ss_pred HHH--HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 677--47998999938983789999998612584898227630355543110021000477652049607725842 Q gi|254780294|r 44 EDL--LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 44 ~~~--~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) +.. -.++|+|+=|++.-.+++-+....+.|...++++.-+. +..+-+|..+|.+..+. +..+|+|-=| T Consensus 80 ~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViisaP~~----d~~~tiV~GvN~~~~~~--~~~iiS~aSC 149 (149) T smart00846 80 NLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK----DADKTFVYGVNHDEYDP--EDHIVSNASC 149 (149) T ss_pred CCCHHHCCCCEEEECCCEEEEHHHHHHHHHCCCCEEEECCCCC----CCCCEEEECCCHHHCCC--CCCEEECCCC T ss_conf 4872340888899805513128876666647967699827988----99878997457544799--8898968879 No 68 >PRK07417 arogenate dehydrogenase; Reviewed Probab=97.06 E-value=0.0043 Score=38.35 Aligned_cols=83 Identities=19% Similarity=0.147 Sum_probs=59.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-----------CCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 0799975886789999999862997289999653007860-----------06677479989999389837899999986 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-----------YREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-----------~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .||+|||. |+.|.=|-.-|.++. .++..+..++..-++ ...+.++++|++|+|+|-+...++.+.+. T Consensus 2 mkI~IiGl-GLIGgSla~al~~~~-~~V~g~d~~~~~~~~A~~~g~id~~~~~~~~~~~aDliila~Pv~~~~~~~~~~~ 79 (280) T PRK07417 2 MNIGIVGL-GLIGGSLGLDLRSLG-HTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEELI 79 (280) T ss_pred CEEEEEEC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCEECCCHHHHCCCCEEEECCCHHHHHHHHHHHH T ss_conf 78999931-857999999999689-9799997999999999986997520278746057998998797477899999998 Q ss_pred HC-CCCEEEECCCCCHH Q ss_conf 12-58489822763035 Q gi|254780294|r 71 KN-GINSRIIDTSTAHR 86 (311) Q Consensus 71 ~~-g~~~~vid~ss~~R 86 (311) .. ..++.|.|.+|--. T Consensus 80 ~~l~~~~iitDv~SvK~ 96 (280) T PRK07417 80 PALPPEAIVTDVGSVKE 96 (280) T ss_pred HHCCCCCEEEECHHHHH T ss_conf 64789848996522307 No 69 >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional Probab=97.05 E-value=0.0052 Score=37.87 Aligned_cols=115 Identities=12% Similarity=0.136 Sum_probs=77.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) .||.|||.+|--|+.|.+.|... -.++..+..+. -.-.++.+.++|+|+.|.|=..+.+...++.....++...|. T Consensus 99 ~~i~IIGG~G~mG~~F~~~f~~s-Gy~V~ild~~d---w~~~~~~~~~advViVsVPI~~T~~VI~~l~~l~~~~lL~Di 174 (374) T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEKDD---WDRADDILADAGMVIVSVPIHLTEEVIEKLPPLPEDCILVDL 174 (374) T ss_pred CEEEEEECCCCHHHHHHHHHHHC-CCEEEEECCCC---CCCHHHHHHCCCEEEEEECHHHHHHHHHHCCCCCCCCEEEEC T ss_conf 71799807982779999999967-98799616444---534898871799899981458899999857789998689861 Q ss_pred CCCHHH---------HHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCC Q ss_conf 630355---------5431100210004776520496077258421133 Q gi|254780294|r 82 STAHRI---------APGWVYGFPEMDKSQKEKIRSARYITNPGCYATG 121 (311) Q Consensus 82 ss~~R~---------~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~ 121 (311) +|--.. ...|.=.-|-.-|+ ...+.++.+|-+||=..-. T Consensus 175 TSvK~~Pl~aMl~~h~gpV~GlHPMFGP~-v~sl~~QvVV~c~gr~~e~ 222 (374) T PRK11199 175 TSVKNGPLQAMLAAHSGPVLGLHPMFGPD-VGSLAKQVVVVCDGRQPEA 222 (374) T ss_pred HHCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCHHH T ss_conf 00427899999985689850227787999-6444787699889998377 No 70 >PRK06928 pyrroline-5-carboxylate reductase; Reviewed Probab=97.03 E-value=0.0018 Score=40.74 Aligned_cols=152 Identities=15% Similarity=0.169 Sum_probs=75.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCC-CCC----CCC-------CHHHHCCCCEEEECCCCHHHHHH Q ss_conf 9079997588678999999986299---72899996530-078----600-------66774799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEE-RHN----LRY-------REDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~-~ag----~~~-------~~~~~~~~Divf~a~p~~~s~~~ 65 (311) |.||+++|+ |--|+.+++=|.++. .-++.....++ ..- .++ .++...++|++|+|.+.....+. T Consensus 1 M~kI~fIG~-GnMg~Aii~Gll~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIilaVKP~~~~~v 79 (275) T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVITPEEIILYSRSENEHFKQLYDKYPTVALASNEELFTKCDHSFICVPPLAVLPL 79 (275) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEECHHHHHHH T ss_conf 988999867-8999999999997899996369997899389999999874953637779998549989999785879999 Q ss_pred HHHHHHC-CCCEEEECCCCCHHHHH-------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCC Q ss_conf 9998612-58489822763035554-------31100210004776520496077258421133112478888850-345 Q gi|254780294|r 66 IQLIKKN-GINSRIIDTSTAHRIAP-------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK-LLP 136 (311) Q Consensus 66 ~~~~~~~-g~~~~vid~ss~~R~~~-------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~-~i~ 136 (311) ...+... ..+..||+-.+-...+. .+.-++|=.+....+.+ +.+..+++|....... +.-|+... ... T Consensus 80 l~~i~~~~~~~~~iISi~AGi~i~~l~~~~~~~vvRvMPNtpa~vg~Gv--t~~~~~~~~~~~~~~~-v~~lf~~~G~v~ 156 (275) T PRK06928 80 MKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGQVSRLIPSLTSAVGVGT--SLVAHAETVAEENKSR-LEELLSAFSHVM 156 (275) T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCEEEEECCCCHHHCCCE--EEEECCCCCCHHHHHH-HHHHHHHCCCEE T ss_conf 9997653279968999569998999997579983797137327767842--8996289899999999-999998579713 Q ss_pred CCCCEEEEEECCCCCCCCCC Q ss_conf 56502676512333356100 Q gi|254780294|r 137 DRYPITINAVSGYTGGGKKL 156 (311) Q Consensus 137 ~~~~~~~~~~sg~sgaG~~~ 156 (311) .+.--.+++.++.||.|.+- T Consensus 157 ~v~E~~~d~~TalsGSGPAy 176 (275) T PRK06928 157 TIREENMDIASNLTSSSPGF 176 (275) T ss_pred EECHHHHHHHHHHHCCHHHH T ss_conf 30589988999883639999 No 71 >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] Probab=97.02 E-value=0.0044 Score=38.34 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=65.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------CCCC----CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 90799975886789999999862997289999653007---------8600----6677479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------NLRY----REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g~~~----~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) |.+++|+|+ |..|..|-++|..- ..|+..-+|+... +..+ .++..+.+|+||+|.|-+.-....+ T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~a-g~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~ 78 (211) T COG2085 1 MMIIAIIGT-GNIGSALALRLAKA-GHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLA 78 (211) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHH T ss_conf 917999625-71878999999967-9739996478806788999864565334776888843998999545787776999 Q ss_pred HHHHCCCCEEEECCCCCH--HHHHHHHHCCCC Q ss_conf 986125848982276303--555431100210 Q gi|254780294|r 68 LIKKNGINSRIIDTSTAH--RIAPGWVYGFPE 97 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~~--R~~~~vpl~vPE 97 (311) .+.+.-.++.|||-+... ...+..-|.+|. T Consensus 79 ~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~ 110 (211) T COG2085 79 ELRDALGGKIVIDATNPIEVNGEPGDLYLVPS 110 (211) T ss_pred HHHHHHCCEEEEECCCCCCCCCCCCCCCCCCC T ss_conf 99987099099966887544688301036888 No 72 >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] Probab=97.01 E-value=0.0035 Score=38.96 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=59.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC-------CCCCC------CHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 907999758867899999998629-9728999965300-------78600------667747998999938983789999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER-------HNLRY------REDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~-------ag~~~------~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) |.+|+|+| .|..|+-+-+-|.++ +...+.-..-+.. -|-.. ..+...+.|++|+|+|-..+.++. T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aDlVivavPi~~~~~~l 81 (279) T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVL 81 (279) T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCHHHCCCHHHHHCCCCCEEEEECCHHHHHHHH T ss_conf 64899987-74677999999997698479972477467787766358530100115554135699899957788999999 Q ss_pred HHHHH-CCCCEEEECCCCCHH Q ss_conf 99861-258489822763035 Q gi|254780294|r 67 QLIKK-NGINSRIIDTSTAHR 86 (311) Q Consensus 67 ~~~~~-~g~~~~vid~ss~~R 86 (311) .++.. ...++.|.|.+|.-+ T Consensus 82 ~~l~~~l~~g~iv~Dv~S~K~ 102 (279) T COG0287 82 KELAPHLKKGAIVTDVGSVKS 102 (279) T ss_pred HHHCCCCCCCCEEECCCCHHH T ss_conf 986303799988973642017 No 73 >pfam02629 CoA_binding CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases. Probab=96.97 E-value=0.0063 Score=37.36 Aligned_cols=76 Identities=17% Similarity=0.279 Sum_probs=53.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE-ECC-CCCCCCCC--------HHHHC--CCCEEEECCCCHHHHHHHHHH Q ss_conf 0799975886789999999862997289999-653-00786006--------67747--998999938983789999998 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-PCE-ERHNLRYR--------EDLLN--AADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~s~-~~ag~~~~--------~~~~~--~~Divf~a~p~~~s~~~~~~~ 69 (311) .||+|+|++++ |+.+..-..++-.+.+..+ ..+ +..|+++. ++..+ ++|++++|.|.+.+++.+..+ T Consensus 4 ~~v~liG~g~l-G~al~~~~~~~~~~~i~~vfdv~p~~~G~~i~gipv~~~l~~~~~~~~idiaii~VP~~~a~~~~~~~ 82 (96) T pfam02629 4 TKVAVIGASGL-GIQGLYHFIQLLGYGIKMVFGVNPRKGGTEVGGIPVYKSVDELEEDTGVDVAVITVPAPFAQEAIDEL 82 (96) T ss_pred CEEEEECCCCC-HHHHHHHHHHHHCCCEEEEEECCCCCCCCEECCEEEECCHHHHHHCCCCCEEEEEECHHHHHHHHHHH T ss_conf 74999998982-78887768877148618998069242775888998431087774155887899994789989999999 Q ss_pred HHCCCCEEE Q ss_conf 612584898 Q gi|254780294|r 70 KKNGINSRI 78 (311) Q Consensus 70 ~~~g~~~~v 78 (311) .++|.+..+ T Consensus 83 v~~GIk~i~ 91 (96) T pfam02629 83 VDAGIKGIV 91 (96) T ss_pred HHCCCCEEE T ss_conf 986998999 No 74 >pfam02670 DXP_reductoisom 1-deoxy-D-xylulose 5-phosphate reductoisomerase. This is a family of 1-deoxy-D-xylulose 5-phosphate reductoisomerases. This enzyme catalyses the formation of 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose-5-phosphate in the presence of NADPH. This reaction is part of the terpenoid biosynthesis pathway. Probab=96.96 E-value=0.003 Score=39.31 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=36.9 Q ss_pred EEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCCCCCCHHHHCCCCEEEE Q ss_conf 9997588678999999986299-728999965300786006677479989999 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHNLRYREDLLNAADVSIL 55 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag~~~~~~~~~~~Divf~ 55 (311) |+|+|+||=+|+.-++++.+|| .|++..++..++..+-......=+..+++. T Consensus 1 I~IlGsTGSIG~~tL~Vi~~~~~~f~v~~Lsa~~N~~~L~~q~~~f~p~~v~i 53 (129) T pfam02670 1 ITILGSTGSIGTQTLDVIRRNPDRFEVVALSAGRNVELLAEQIKEFKPKYVAV 53 (129) T ss_pred CEEECCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHCCCCEEEE T ss_conf 98976786889999999995956718999983478999999999739979999 No 75 >TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. Probab=96.95 E-value=0.0071 Score=37.04 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=36.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCC------------CHHHHCCCCEEEECCC Q ss_conf 0799975886789999999862997289999653007-----8600------------6677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRY------------REDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~------------~~~~~~~~Divf~a~p 58 (311) .||-|.||||++|..+++.|.+.- .+++.+.-..+. +..+ -+..++++|+||-++. T Consensus 1 MriLVTGgtGfiG~~l~~~L~~~G-~~V~~l~r~~~~~~~~~~~~~~~~~gDl~d~~~~~~~~~~~d~ViH~Aa 73 (328) T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLERG-EEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKALAGCRALFHVAA 73 (328) T ss_pred CEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCCCCHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEEEEECC T ss_conf 949998677799999999999784-9899998999865565217977998207999999999717858976134 No 76 >cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=96.89 E-value=0.0031 Score=39.25 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=39.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC------EEEEEEECCCC----CCCCC------------------CHHHHCCCCEE Q ss_conf 0799975886789999999862997------28999965300----78600------------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD------LCLLSIPCEER----HNLRY------------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~------~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div 53 (311) .||+|+||+|.+|+.+.-+|.+.+. ++|+++...+. .|... ..++++++|+| T Consensus 1 ~KV~IiGA~G~IG~~la~~l~~~~l~g~~~~i~l~L~Di~~~~~~~~G~~mdl~~~a~~~~~~v~~~~~~~~~~~~aDvV 80 (323) T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323) T ss_pred CEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEECCCHHHHHCCCCEE T ss_conf 98999899978999999999728636998600899975888655531487866534665558748428858983799889 Q ss_pred EECCC Q ss_conf 99389 Q gi|254780294|r 54 ILCLP 58 (311) Q Consensus 54 f~a~p 58 (311) ++.++ T Consensus 81 iitaG 85 (323) T cd00704 81 ILVGA 85 (323) T ss_pred EECCC T ss_conf 98278 No 77 >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. Probab=96.89 E-value=0.011 Score=35.97 Aligned_cols=78 Identities=15% Similarity=0.319 Sum_probs=50.0 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-------CCC-------HHH-------HCCCCEEEECCCCH-- Q ss_conf 9997588678999999986299728999965300786-------006-------677-------47998999938983-- Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-------RYR-------EDL-------LNAADVSILCLPDV-- 60 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-------~~~-------~~~-------~~~~Divf~a~p~~-- 60 (311) |.|.||||.+|+.+++.|.+.. .+++.++.++.+.. +++ +.. .+++|.+|+..|.. T Consensus 2 IlVtGATG~iG~~v~~~L~~~g-~~v~~~~R~~~~~~~~~~~~v~~d~~d~~~~~~a~~~~d~~~~~v~~v~l~~p~~~~ 80 (285) T TIGR03649 2 ILLTGGTGKTASRIARLLQAAS-VPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPPIPD 80 (285) T ss_pred EEEECCCCHHHHHHHHHHHHCC-CCEEEEECCHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCC T ss_conf 8999899818999999998689-978999588566466667536864448114888976353231274189983899877 Q ss_pred ---HHHHHHHHHHHCCCCEEEECCCC Q ss_conf ---78999999861258489822763 Q gi|254780294|r 61 ---ASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 61 ---~s~~~~~~~~~~g~~~~vid~ss 83 (311) ....++..+.++|.. +|+-.|. T Consensus 81 ~~~~~~~~i~aA~~aGV~-~iV~lS~ 105 (285) T TIGR03649 81 LAPPMIKFIDFARSKGVR-RFVLLSA 105 (285) T ss_pred HHHHHHHHHHHHHHCCCC-EEEEEEC T ss_conf 678999999999984998-8999830 No 78 >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] Probab=96.87 E-value=0.0046 Score=38.21 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=93.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCC-CC-------CCC---CCHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 90799975886789999999862997---2899996530-07-------860---0667747998999938983789999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEE-RH-------NLR---YREDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~-~a-------g~~---~~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) |.||+++|+ |--|+.|++=|.+.+. .++..-..+. +. |-. -......+.|++|+|.......+.. T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl 79 (266) T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVL 79 (266) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCHHHHHHHCCEEEEEECHHHHHHHH T ss_conf 965899846-8899999999996689980238983799999999999849855686798874089899984827689999 Q ss_pred HHHHHCCCCEEEECCCCCHHHH--------HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 9986125848982276303555--------43110021000477652049607725842113311247888885034556 Q gi|254780294|r 67 QLIKKNGINSRIIDTSTAHRIA--------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDR 138 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss~~R~~--------~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~ 138 (311) +.+.....+..||+-..--+.+ ..+.=+.|-.+....+. -+.+..|.+|+......+..-|-..+....+ T Consensus 80 ~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g--~t~i~~~~~~~~~~~~~v~~l~~~~G~v~~v 157 (266) T COG0345 80 SKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG--VTAISANANVSEEDKAFVEALLSAVGKVVEV 157 (266) T ss_pred HHHHCCCCCCEEEEEECCCCHHHHHHHCCCCCEEEECCCHHHHHCCC--CEEEECCCCCCHHHHHHHHHHHHHCCCEEEE T ss_conf 97323568887999707997999998748996699678858897175--2265137658988999999999825986996 Q ss_pred CCEEEEEECCCCCCCCCCC Q ss_conf 5026765123333561000 Q gi|254780294|r 139 YPITINAVSGYTGGGKKLI 157 (311) Q Consensus 139 ~~~~~~~~sg~sgaG~~~~ 157 (311) .-.-++++++.||.|-.-. T Consensus 158 ~E~~~da~TaisGSgPAyv 176 (266) T COG0345 158 EESLMDAVTALSGSGPAYV 176 (266) T ss_pred CHHHHHHHHHHHCCCHHHH T ss_conf 4677149999844868999 No 79 >pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain. Probab=96.86 E-value=0.01 Score=36.04 Aligned_cols=94 Identities=18% Similarity=0.259 Sum_probs=58.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------C------CCCC------C---HHHHCCCCEEEECC Q ss_conf 079997588678999999986299728999965300---------7------8600------6---67747998999938 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------H------NLRY------R---EDLLNAADVSILCL 57 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------a------g~~~------~---~~~~~~~Divf~a~ 57 (311) .||+|+|| |.-|..|-..|.+.- .++...+-++. . |.++ . ++.++++|++|+|+ T Consensus 1 kKI~IiGa-G~wGtAla~~la~n~-~~V~l~~r~~~~~~~i~~~~~n~~~lp~~~l~~~i~~~~dl~~a~~~adiIiiav 78 (159) T pfam01210 1 KKIAVLGA-GSWGTALAKVLARNG-HEVRLWGRDEELIEEINTTRENVKYLPGIKLPDNLRATTDLEEAIKGADIIVLAV 78 (159) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEEEEECCHHHHHHHHCCCCCHHCCCCCCCCCEEECCCHHHHHHCCCEEEEEC T ss_conf 98999996-999999999999879-9899999043666778866978210478645553054288999983798999917 Q ss_pred CCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCC Q ss_conf 9837899999986125-84898227630355543110021000 Q gi|254780294|r 58 PDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMD 99 (311) Q Consensus 58 p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN 99 (311) |...-+++...+...- ....++..+.-+ +++--+.+.|+- T Consensus 79 ps~~~~~~~~~i~~~~~~~~~iv~~sKGi--e~~t~~~~s~i~ 119 (159) T pfam01210 79 PSQALREVLKQLKGLLSPGAILVSLTKGI--EPGTLKLLSEII 119 (159) T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEECCC--CCCCCCCHHHHH T ss_conf 48899999999986557655688875144--278875299999 No 80 >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=96.86 E-value=0.0047 Score=38.13 Aligned_cols=56 Identities=16% Similarity=0.241 Sum_probs=37.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCC----CCCCC------------------HHHHCCCCEE Q ss_conf 07999758867899999998629------97289999653007----86006------------------6774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERH----NLRYR------------------EDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~a----g~~~~------------------~~~~~~~Div 53 (311) .||+|+||||.+|+.+.-.|.+. ..++|.++...... |...+ .+.++++|+| T Consensus 3 ~KV~IiGAaG~IG~~la~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~amDl~~~a~~~~~~v~~~~~~~~a~~~aDvV 82 (322) T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322) T ss_pred EEEEEECCCCHHHHHHHHHHHHCHHCCCCCEEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEEECCHHHHHCCCCEE T ss_conf 09999899968999999999711130799726999975757566676577445326765458779748878983788789 Q ss_pred EECC Q ss_conf 9938 Q gi|254780294|r 54 ILCL 57 (311) Q Consensus 54 f~a~ 57 (311) +..+ T Consensus 83 vita 86 (322) T cd01338 83 LLVG 86 (322) T ss_pred EEEC T ss_conf 9936 No 81 >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional Probab=96.80 E-value=0.0041 Score=38.47 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=29.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9079997588678999999986299728999965 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |+||-|-||+|++|..|++.|.++...++..+.- T Consensus 1 MKkILVTGgaGFIGs~Lv~~Ll~~~~~~V~~~d~ 34 (347) T PRK11908 1 MKKVLILGVNGFIGHHLTKRILETTDWEVYGMDM 34 (347) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEC T ss_conf 9889997574389999999999828978999979 No 82 >COG2910 Putative NADH-flavin reductase [General function prediction only] Probab=96.80 E-value=0.0089 Score=36.41 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=57.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCC--------C--HHHHCCCCEEEECCCCHHHHH-- Q ss_conf 0799975886789999999862997289999653007-----8600--------6--677479989999389837899-- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRY--------R--EDLLNAADVSILCLPDVASLE-- 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~--------~--~~~~~~~Divf~a~p~~~s~~-- 64 (311) .||||+||||-+|.++++-..+| .-|++.+.-+.++ +..+ . .+++.+.|+|++|-+...+.+ T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R-GHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~~~ 79 (211) T COG2910 1 MKIAIIGASGKAGSRILKEALKR-GHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDNDE 79 (211) T ss_pred CEEEEEECCCHHHHHHHHHHHHC-CCEEEEEEECHHHCCCCCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCHHH T ss_conf 90789953745679999999867-98048998076766522353020002227456676635876699721578887157 Q ss_pred --------HHHHHHHCCC-CEEEECCCCCHHHHHHHHHC-CCCCCHHH Q ss_conf --------9999861258-48982276303555431100-21000477 Q gi|254780294|r 65 --------IIQLIKKNGI-NSRIIDTSTAHRIAPGWVYG-FPEMDKSQ 102 (311) Q Consensus 65 --------~~~~~~~~g~-~~~vid~ss~~R~~~~vpl~-vPEvN~~~ 102 (311) +...+..+|. +..|+--.+...+++++-|+ .|+...++ T Consensus 80 ~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey 127 (211) T COG2910 80 LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEY 127 (211) T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCCCEEECCCCCCHHH T ss_conf 788899999999861597059998474205876884550589985667 No 83 >pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Probab=96.78 E-value=0.0032 Score=39.15 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=57.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-CC--------CCC-----CC--HHHHCCCCEEEECCCCHH---H Q ss_conf 07999758867899999998629972899996530-07--------860-----06--677479989999389837---8 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RH--------NLR-----YR--EDLLNAADVSILCLPDVA---S 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~a--------g~~-----~~--~~~~~~~Divf~a~p~~~---s 62 (311) .||.|||| |-.|+..++-|.++..-+++...-+. ++ |.. ++ ...+.++|++|+|++... . T Consensus 13 ~~vlVIGa-G~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~~~~l~~~l~~~DivI~aT~s~~~ii~ 91 (134) T pfam01488 13 KKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALPLDELEELLAEADIVISATSAPTPIIT 91 (134) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCCEEEEECCCCCCEEC T ss_conf 98999996-09999999999975998899954757899999998499725898513544136319999992599973648 Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHHH Q ss_conf 999999861258489822763035554311 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWV 92 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~vp 92 (311) ++..+. ......++|.+-.--.||++. T Consensus 92 ~~~~~~---~~~~~~iiDLavPrnvd~~v~ 118 (134) T pfam01488 92 KEMVEE---ALKGLLFVDIAVPRDIEPEVG 118 (134) T ss_pred HHHHHH---CCCCEEEEEECCCCCCCHHHC T ss_conf 999974---439859998347888665454 No 84 >COG2344 AT-rich DNA-binding protein [General function prediction only] Probab=96.76 E-value=0.0067 Score=37.19 Aligned_cols=74 Identities=15% Similarity=0.328 Sum_probs=57.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHH-CCCCEEEEEE-ECC-CCCCCCCCH----------H--HHCCCCEEEECCCCHHHHHH Q ss_conf 9079997588678999999986-2997289999-653-007860066----------7--74799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIV-QRKDLCLLSI-PCE-ERHNLRYRE----------D--LLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~-~hp~~~l~~l-~s~-~~ag~~~~~----------~--~~~~~Divf~a~p~~~s~~~ 65 (311) |.||.|||+ |-.|+.|+..-- ++..+.+... ..+ +..|++..+ . .-.++|++++|.|.+.+++. T Consensus 84 ~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~v 162 (211) T COG2344 84 TTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEV 162 (211) T ss_pred CEEEEEECC-CHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCCCCEEEEECCHHHHHHH T ss_conf 034899905-7088898607423326935999961787883752488145526888889886176189997348989999 Q ss_pred HHHHHHCCCC Q ss_conf 9998612584 Q gi|254780294|r 66 IQLIKKNGIN 75 (311) Q Consensus 66 ~~~~~~~g~~ 75 (311) +..+.++|.+ T Consensus 163 ad~Lv~aGVk 172 (211) T COG2344 163 ADRLVKAGVK 172 (211) T ss_pred HHHHHHCCCC T ss_conf 9999983873 No 85 >PRK06153 hypothetical protein; Provisional Probab=96.74 E-value=0.0022 Score=40.22 Aligned_cols=10 Identities=20% Similarity=0.132 Sum_probs=5.7 Q ss_pred CCEEEECCCC Q ss_conf 9899993898 Q gi|254780294|r 50 ADVSILCLPD 59 (311) Q Consensus 50 ~Divf~a~p~ 59 (311) ++.-|++=|. T Consensus 100 ~~~~FSnKP~ 109 (393) T PRK06153 100 VQHSFSNKPG 109 (393) T ss_pred EEEEECCCCC T ss_conf 8787557999 No 86 >pfam03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent. Probab=96.73 E-value=0.0044 Score=38.30 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=51.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--CC-------CCCC----CHHHHCCCCEEEECCCCHHHHHHHHHH Q ss_conf 7999758867899999998629972899996530--07-------8600----667747998999938983789999998 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--RH-------NLRY----REDLLNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--~a-------g~~~----~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311) ||+|+|+ |..|..|.+-|.+..+ ++....+++ +. +... ..+..+++|++|+|.|.....+....+ T Consensus 1 KIg~IG~-G~mg~ai~~~l~~~g~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvIilavkp~~~~~vl~~i 78 (93) T pfam03807 1 KIGIIGA-GNMGEALARGLAAAGH-EVIIANSRNPEKAAALAEELGVGATAVSNEEAAEEADVVILAVKPEDAPEVLAEL 78 (93) T ss_pred CEEEECC-HHHHHHHHHHHHHCCC-CCEEEECCCHHHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEEECHHHHHHHHHHH T ss_conf 9899970-0999999999997799-6127864878999999998199764589999974499899997999999999987 Q ss_pred HHCCCCEEEECCC Q ss_conf 6125848982276 Q gi|254780294|r 70 KKNGINSRIIDTS 82 (311) Q Consensus 70 ~~~g~~~~vid~s 82 (311) ...-.+..+||-. T Consensus 79 ~~~~~~k~vISv~ 91 (93) T pfam03807 79 ADLLKGKLVISIT 91 (93) T ss_pred HHHCCCCEEEEEC T ss_conf 6250899999809 No 87 >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine Probab=96.72 E-value=0.021 Score=34.06 Aligned_cols=56 Identities=20% Similarity=0.178 Sum_probs=39.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCC Q ss_conf 0799975886789999999862997-28999965300--78600------------------6677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER--HNLRY------------------REDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p 58 (311) .||+|+|| |.||..+.-.|...+. .||.++.-.+. .|+.. ..+.++++|+++.+++ T Consensus 1 rKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~a~G~a~DL~~~~~~~~~~~~i~~~~~~~~~~aDvvVitAG 77 (306) T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAG 77 (306) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCEEEECCC T ss_conf 95999996-988999999998579987799981898701769998870133059973996088788478999999067 No 88 >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=96.72 E-value=0.025 Score=33.63 Aligned_cols=56 Identities=16% Similarity=0.131 Sum_probs=37.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCC--CCCCC-----------------HHHHCCCCEEEECCC Q ss_conf 0799975886789999999862997-289999653007--86006-----------------677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERH--NLRYR-----------------EDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~a--g~~~~-----------------~~~~~~~Divf~a~p 58 (311) .||+|+|| |.||+.+--.|..++. -||.++.-.+.. |+..+ -+.++++|+++.+++ T Consensus 1 mKI~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~DL~~a~~~~~~~~i~~~~~~~l~daDvVVitaG 76 (308) T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAG 76 (308) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCEEEECCC T ss_conf 97999994-88899999999867998879999188984512568766241036881684099999779999998999 No 89 >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains Probab=96.67 E-value=0.017 Score=34.60 Aligned_cols=56 Identities=18% Similarity=0.234 Sum_probs=40.9 Q ss_pred EEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCC--CCCC-----------------C--HHHHCCCCEEEECCCC Q ss_conf 9997588678999999986299---7289999653007--8600-----------------6--6774799899993898 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERH--NLRY-----------------R--EDLLNAADVSILCLPD 59 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~a--g~~~-----------------~--~~~~~~~Divf~a~p~ 59 (311) |+|+||+|.||..+.-.|..+. ..||.++.-.+.. |+.. . .+.++++|++++.++. T Consensus 1 V~IIGA~G~VG~~~a~~l~~~~~~~~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~v~~~~~~~~~~~daDvVVitag~ 80 (263) T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263) T ss_pred CEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHCCCCEEEEECCC T ss_conf 98987797799999999982899999889999589872087999998545235787399748738983799899990577 No 90 >PRK07679 pyrroline-5-carboxylate reductase; Reviewed Probab=96.65 E-value=0.014 Score=35.12 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=76.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECC-CCCC----CCC-------CHHHHCCCCEEEECCCCHHHHHH Q ss_conf 90799975886789999999862997---289999653-0078----600-------66774799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCE-ERHN----LRY-------REDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~-~~ag----~~~-------~~~~~~~~Divf~a~p~~~s~~~ 65 (311) |.||+++|+ |--|+.+++=|.++.. .++....-+ +..- +++ ..+...++|++|+|.....-.+. T Consensus 3 mm~I~fIG~-GnMg~Aii~gl~~~~~~~~~~i~v~~r~~~~~~~~l~~~~~v~~~~~~~~~~~~~diI~LaVKP~~~~~v 81 (279) T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA 81 (279) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEECCHHHHHHHCCEEEEECCHHHHHHH T ss_conf 788999876-8999999999997879997579997898499999999971966637779998449999995278999999 Q ss_pred HHHHHHC-CCCEEEECCCCCHHHH-------HHHH--HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC- Q ss_conf 9998612-5848982276303555-------4311--002100047765204960772584211331124788888503- Q gi|254780294|r 66 IQLIKKN-GINSRIIDTSTAHRIA-------PGWV--YGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL- 134 (311) Q Consensus 66 ~~~~~~~-g~~~~vid~ss~~R~~-------~~vp--l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~- 134 (311) ...+... ..+..||+-.+-...+ .+.+ =+.|=++....+.. ..+..+++|..-...... -|+...+ T Consensus 82 ~~~i~~~~~~~~~iISi~AGi~~~~l~~~l~~~~~ivR~MPN~~~~vg~g~--t~i~~~~~~~~~~~~~v~-~lf~~~G~ 158 (279) T PRK07679 82 LTPFKEYIHNNVLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSA--TAISPSKHATAEHIQTAK-ALFETIGL 158 (279) T ss_pred HHHHHHHCCCCCEEEEECCCCCHHHHHHHCCCCCCEEEECCCHHHHHHCCC--EEECCCCCCCHHHHHHHH-HHHHHCCE T ss_conf 999875458992999974788899999752999857983597678850577--355279999999999999-99961785 Q ss_pred CCCCCCEEEEEECCCCCCCCCC Q ss_conf 4556502676512333356100 Q gi|254780294|r 135 LPDRYPITINAVSGYTGGGKKL 156 (311) Q Consensus 135 i~~~~~~~~~~~sg~sgaG~~~ 156 (311) ...+.--.+++.++.+|.|.+- T Consensus 159 ~~~v~E~~~d~~TalsGSgPAf 180 (279) T PRK07679 159 VSVVEEEDMHAVTALSGSGPAY 180 (279) T ss_pred EEEECHHHCCCHHHEECCHHHH T ss_conf 9995433303210001664899 No 91 >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, Probab=96.60 E-value=0.0089 Score=36.41 Aligned_cols=11 Identities=9% Similarity=0.341 Sum_probs=5.2 Q ss_pred HHHHHHHCCCC Q ss_conf 99999862997 Q gi|254780294|r 16 KIRSRIVQRKD 26 (311) Q Consensus 16 ~li~lL~~hp~ 26 (311) ++++.|.++|. T Consensus 28 ~~l~~l~~~~~ 38 (311) T cd05213 28 EALRRLLEKPG 38 (311) T ss_pred HHHHHHHCCCC T ss_conf 99999863799 No 92 >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=96.60 E-value=0.0091 Score=36.34 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=41.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC------EEEEEEECCCCC----CCCC------------------CHHHHCCCCEE Q ss_conf 0799975886789999999862997------289999653007----8600------------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD------LCLLSIPCEERH----NLRY------------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~------~~l~~l~s~~~a----g~~~------------------~~~~~~~~Div 53 (311) .||+|.||+|.+|+.|+-+|.+-.. ++|+++...... |... .++.|+++|++ T Consensus 3 ~kV~VtGAaG~Ig~~l~~~la~g~~~g~~~~i~L~L~Di~~~~~~l~Gv~mel~d~a~p~l~~i~~~~~~~~a~~~aDvv 82 (325) T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325) T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCEEEEEHHHCCCCCCCCEEECCCHHHHHCCCCEE T ss_conf 19999888718899999999758856899705999966778677655267457437864558735228878983688789 Q ss_pred EECCC Q ss_conf 99389 Q gi|254780294|r 54 ILCLP 58 (311) Q Consensus 54 f~a~p 58 (311) ++..+ T Consensus 83 ii~ag 87 (325) T cd01336 83 ILVGA 87 (325) T ss_pred EEECC T ss_conf 99488 No 93 >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] Probab=96.55 E-value=0.011 Score=35.92 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=53.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC---CCCHHHH-CCCCEEEECCC------------------ Q ss_conf 9079997588678999999986299728999965300786---0066774-79989999389------------------ Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL---RYREDLL-NAADVSILCLP------------------ 58 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~---~~~~~~~-~~~Divf~a~p------------------ 58 (311) |. |.|+|++|++|++|.++|. +.+++..++..+---. .+.+... .+-|+|+-|+. T Consensus 1 M~-iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vN 77 (281) T COG1091 1 MK-ILITGANGQLGTELRRALP--GEFEVIATDRAELDITDPDAVLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVN 77 (281) T ss_pred CC-EEEECCCCHHHHHHHHHHC--CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHH T ss_conf 95-8997698767999999717--78439951576555568589999998619998998732036541338989977767 Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf 83789999998612584898227630355543 Q gi|254780294|r 59 DVASLEIIQLIKKNGINSRIIDTSTAHRIAPG 90 (311) Q Consensus 59 ~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~ 90 (311) ..-+...+....+.| .++|--|++|=+|-. T Consensus 78 a~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~ 107 (281) T COG1091 78 ATGAENLARAAAEVG--ARLVHISTDYVFDGE 107 (281) T ss_pred HHHHHHHHHHHHHHC--CEEEEEECCEEECCC T ss_conf 799999999999719--769996344574389 No 94 >PRK07634 pyrroline-5-carboxylate reductase; Reviewed Probab=96.53 E-value=0.016 Score=34.91 Aligned_cols=150 Identities=13% Similarity=0.145 Sum_probs=72.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCCC--CC----C-----C--HHHHCCCCEEEECCCCHHHHHH Q ss_conf 079997588678999999986299---72899996530078--60----0-----6--6774799899993898378999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERHN--LR----Y-----R--EDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~ag--~~----~-----~--~~~~~~~Divf~a~p~~~s~~~ 65 (311) .||+++|+ |--|+.+++=|.+.. ..++. +..++... +. + . .+..+++|++|+|.+.....+. T Consensus 5 ~kI~fIG~-GnMg~Aii~gll~~~~~~~~~i~-v~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~d~IilavKP~~~~~v 82 (245) T PRK07634 5 HRILFIGA-GRMAEAIFSGLLKTSKEYIEEII-VSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEEL 82 (245) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCCCCEEE-EECCCCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEEECCHHHHHH T ss_conf 91999875-89999999999977999960599-96999999999999971974227779998559999999891749999 Q ss_pred HHHHHHCCCCEEEECCCCCHHHH-------HHHHH--CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH-CCC Q ss_conf 99986125848982276303555-------43110--021000477652049607725842113311247888885-034 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRIA-------PGWVY--GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKA-KLL 135 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~~-------~~vpl--~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~-~~i 135 (311) .+.+.....+..||+-.+--..+ .+.+. +.|=+.....+.. ..+..+++|....-... .-|+.. +.. T Consensus 83 l~~i~~~~~~~~iISi~AGi~i~~l~~~l~~~~~v~R~MPN~~~~v~~g~--t~~~~~~~~~~~~~~~v-~~lf~~~G~~ 159 (245) T PRK07634 83 LAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSI--SLYTMGQFVNETHQETL-QLLLRGIGTS 159 (245) T ss_pred HHHHHHHHCCCEEEEEECCCCHHHHHHHCCCCCEEEEECCCHHHHHCCCC--EEEECCCCCCHHHHHHH-HHHHHCCCEE T ss_conf 99987760698899981799899999874899728994585748975881--89853887999999999-9998628549 Q ss_pred CCCCCEEEEEECCCCCCCCCC Q ss_conf 556502676512333356100 Q gi|254780294|r 136 PDRYPITINAVSGYTGGGKKL 156 (311) Q Consensus 136 ~~~~~~~~~~~sg~sgaG~~~ 156 (311) ..+.--.++..++.+|.|.+- T Consensus 160 ~~v~E~~~d~~TalsGSGPAy 180 (245) T PRK07634 160 QLCTEEEVHQLTAVTGSAPAF 180 (245) T ss_pred EEECCCCCCCEEECCCCCHHH T ss_conf 997641246244436770999 No 95 >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] Probab=96.50 E-value=0.002 Score=40.47 Aligned_cols=31 Identities=6% Similarity=-0.185 Sum_probs=20.2 Q ss_pred CCCCEEEEEEEEEEECCCCCCCHHHHHHHHH Q ss_conf 4332027899998632577544899886654 Q gi|254780294|r 206 RFPQGIAIQISLDMERLSWKTNSEELHSIFQ 236 (311) Q Consensus 206 ~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~ 236 (311) +......+|+++++.++|+.....+..+.+. T Consensus 227 ~~~~VsatcvRVPV~~GHse~v~ve~~~~~~ 257 (334) T COG0136 227 PDIKVSATCVRVPVFYGHSEAVTVEFKKDVD 257 (334) T ss_pred CCCCEEEEEEECCEECCCCEEEEEEECCCCC T ss_conf 9882578999724161520678998569899 No 96 >PRK05472 redox-sensing transcriptional repressor Rex; Provisional Probab=96.49 E-value=0.019 Score=34.36 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=59.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEE-ECC-CCCCCCCCH-----------H-HHCCCCEEEECCCCHHHHHH Q ss_conf 907999758867899999998629-97289999-653-007860066-----------7-74799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSI-PCE-ERHNLRYRE-----------D-LLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l-~s~-~~ag~~~~~-----------~-~~~~~Divf~a~p~~~s~~~ 65 (311) +.|++|||| |--|+.|++--.-+ ..|+++.+ ..+ +..|+++.. . .-.++++++.|.|.+.+++. T Consensus 84 ~~~v~lvGa-GnLG~AL~~y~gf~~~gf~Iva~FD~dp~kiG~~i~gi~V~~i~~L~~~i~~~~i~iaIiaVP~~~AQ~v 162 (211) T PRK05472 84 TTNVALVGA-GNLGRALLNYNGFKKRGFKIVAAFDVDPEKVGTKIGGIPVYHIDELEEVIKENDIEIAILTVPAEAAQEV 162 (211) T ss_pred CCEEEEECC-CHHHHHHHHCCCHHHCCCEEEEEECCCHHHCCCEECCEEEECHHHHHHHHHHHCCCEEEEECCHHHHHHH T ss_conf 750899888-7799999848762318978999974897885988388387349999999998199389995576889999 Q ss_pred HHHHHHCCCCEEEECCCCCHHH Q ss_conf 9998612584898227630355 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRI 87 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~ 87 (311) +..+.++|.. -|=|=+..++ T Consensus 163 ad~Lv~aGIk--~IlNFap~~L 182 (211) T PRK05472 163 ADRLVEAGIK--GILNFAPVRL 182 (211) T ss_pred HHHHHHHCCE--EEEECCCCCC T ss_conf 9999981983--9997687244 No 97 >KOG1502 consensus Probab=96.46 E-value=0.014 Score=35.11 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=38.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCCC------------HHHHCCCCEEEEC Q ss_conf 9079997588678999999986299728999965300------------786006------------6774799899993 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRYR------------EDLLNAADVSILC 56 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~~------------~~~~~~~Divf~a 56 (311) +.+|+|-|||||+|..++++|.+|-+.=...+-+.+. +++++. +..+++||.||-. T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327) T KOG1502 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCCHHHHHHHCCCEEEEE T ss_conf 72799948820899999999986899899997086305658999865157544258852435513599997078789991 Q ss_pred C Q ss_conf 8 Q gi|254780294|r 57 L 57 (311) Q Consensus 57 ~ 57 (311) + T Consensus 86 A 86 (327) T KOG1502 86 A 86 (327) T ss_pred C T ss_conf 7 No 98 >PTZ00082 L-lactate dehydrogenase; Provisional Probab=96.45 E-value=0.03 Score=33.17 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=40.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCC Q ss_conf 799975886789999999862997289999653007--8600-------------------6677479989999389 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLP 58 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p 58 (311) ||+|+|| |.||..+--+|...+..|+.++.-.+.. |+.. .-++.+++|+++.+++ T Consensus 9 KV~IIGa-G~VG~~~A~~l~~~~l~eivLiDi~~~~a~g~a~Dl~h~~~~~~~~~~v~~~~dy~~~~~aDiVVitAG 84 (322) T PTZ00082 9 KISLIGS-GNIGGVMAYLIQLKNLADVVLFDIVPNIPAGKALDIMHANVMAGSNCKVIGTNSYDDIAGSDVVIVTAG 84 (322) T ss_pred CEEEECC-CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCHHHHCCCCEEEECCC T ss_conf 2999896-989999999996389977999978898008899987663644688857983799999779999998988 No 99 >PRK05442 malate dehydrogenase; Provisional Probab=96.41 E-value=0.012 Score=35.58 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=39.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHC------CCCEEEEEEECCCC----CCCCC------------------CHHHHCCCCEE Q ss_conf 0799975886789999999862------99728999965300----78600------------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ------RKDLCLLSIPCEER----HNLRY------------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~------hp~~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div 53 (311) .||+|+||+|.+|+.|+-+|.. ...++|+++..... .|... .++.|+++|+| T Consensus 5 ~kV~I~GAaG~ig~~l~~~la~g~l~g~~~~v~l~L~Di~~~~~~l~G~ameL~d~a~p~l~~v~~~~~~~~a~~~aDvv 84 (325) T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPQAQKALKGVVMELEDCAFPLLAGVVITDDPKVAFKDADVA 84 (325) T ss_pred EEEEEECCCCHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCCEEEEEHHCCCCCCCCCEEEECCHHHHHCCCCEE T ss_conf 29999888868889999998661320899846999965777666556677342116754448768508878983799889 Q ss_pred EECCC Q ss_conf 99389 Q gi|254780294|r 54 ILCLP 58 (311) Q Consensus 54 f~a~p 58 (311) +...+ T Consensus 85 iitag 89 (325) T PRK05442 85 LLVGA 89 (325) T ss_pred EECCC T ss_conf 98078 No 100 >PRK08818 prephenate dehydrogenase; Provisional Probab=96.41 E-value=0.02 Score=34.23 Aligned_cols=80 Identities=20% Similarity=0.222 Sum_probs=59.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH-HHHCCCCEEEECCCCHHHHHHHHH---HH---HCCCC Q ss_conf 799975886789999999862997289999653007860066-774799899993898378999999---86---12584 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE-DLLNAADVSILCLPDVASLEIIQL---IK---KNGIN 75 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~-~~~~~~Divf~a~p~~~s~~~~~~---~~---~~g~~ 75 (311) .|+|+|.||.-|..+-+.|.+| +.+..+......++.++. ....+.|+++++.|-+++....+. .+ ++| T Consensus 6 iV~iiG~~~~~G~w~a~flr~~--~~~~vig~dp~~~~s~D~~~l~~~aDIVIisVPI~~T~~vI~E~~~~Ap~~~~g-- 81 (373) T PRK08818 6 VVGIVGIAGAYGRWLAQFLRTR--MQLEVIGYDPADPGSLDPATLLARADVLVFSAPIRHTAALIERYVALAGARAAG-- 81 (373) T ss_pred EEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCCCC-- T ss_conf 3899626632658999998743--661788548877566698898623898999778032388998877416556788-- Q ss_pred EEEECCCCCHH Q ss_conf 89822763035 Q gi|254780294|r 76 SRIIDTSTAHR 86 (311) Q Consensus 76 ~~vid~ss~~R 86 (311) ..+.|.+|--. T Consensus 82 sLLmDVTSIKe 92 (373) T PRK08818 82 QLWLDVTSIKQ 92 (373) T ss_pred CEEEEEHHHHH T ss_conf 56885033406 No 101 >PRK06223 malate dehydrogenase; Reviewed Probab=96.40 E-value=0.044 Score=32.11 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=28.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCC Q ss_conf 079997588678999999986299-72899996530 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEE 36 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~ 36 (311) .||+|+|| |.||..+.-.|..++ ..||.++.-.+ T Consensus 1 mKI~IiGa-G~VG~~~a~~l~~~~l~~el~L~Di~~ 35 (312) T PRK06223 1 MKISIIGA-GNVGATLAHLLALKELGKDVVLFDIPE 35 (312) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 97999996-989999999998579987489976999 No 102 >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] Probab=96.37 E-value=0.057 Score=31.42 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=41.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCCC--CCCCC----------------C---HHHHCCCCEEEECCC Q ss_conf 07999758867899999998629972-8999965300--78600----------------6---677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEER--HNLRY----------------R---EDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~~--ag~~~----------------~---~~~~~~~Divf~a~p 58 (311) .||+|+|| |.||+.+.-+|...... |+.++.=.+. .|... . -.+++++|+|+++++ T Consensus 1 ~KV~viGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG 78 (313) T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAG 78 (313) T ss_pred CEEEEECC-CHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHCCHHHCCHHCCCCEEEECCCCHHHHCCCCEEEEECC T ss_conf 93999898-7478999999962555665999974666564011025334000267618834787023169989999688 No 103 >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] Probab=96.29 E-value=0.028 Score=33.37 Aligned_cols=57 Identities=21% Similarity=0.362 Sum_probs=40.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------CC---------------------CC---CHHHHCCCC Q ss_conf 0799975886789999999862997289999653007------86---------------------00---667747998 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------NL---------------------RY---REDLLNAAD 51 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------g~---------------------~~---~~~~~~~~D 51 (311) .||+|+|. ||||..-=-+|+++ --++..+.-.+++ |+ ++ .+....+.| T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~-GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad 78 (414) T COG1004 1 MKITVIGT-GYVGLVTGACLAEL-GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD 78 (414) T ss_pred CCEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCEEEECCHHHHHHCCC T ss_conf 91589888-55688789999870-98489995788999998679999767058999984623572798747888962597 Q ss_pred EEEECCCCH Q ss_conf 999938983 Q gi|254780294|r 52 VSILCLPDV 60 (311) Q Consensus 52 ivf~a~p~~ 60 (311) ++|.|+|.. T Consensus 79 v~fIavgTP 87 (414) T COG1004 79 VVFIAVGTP 87 (414) T ss_pred EEEEECCCC T ss_conf 799974899 No 104 >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional Probab=96.29 E-value=0.015 Score=35.09 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9079997588678999999986299728999965 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |+||-|.|+||++|..|++.|.++-.-.+..+.. T Consensus 1 MKkILVTGg~GFIGs~Lv~~Ll~~~~~~v~~~d~ 34 (355) T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355) T ss_pred CCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEC T ss_conf 9969993787579999999999769988999828 No 105 >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=96.26 E-value=0.074 Score=30.71 Aligned_cols=34 Identities=21% Similarity=0.268 Sum_probs=27.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCC Q ss_conf 079997588678999999986299-72899996530 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEE 36 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~ 36 (311) -||+|+|| |.||..+--.|..++ .-||.++.-.+ T Consensus 4 ~Kv~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~ 38 (312) T cd05293 4 NKVTVVGV-GQVGMACAISILAKGLADELVLVDVVE 38 (312) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCC T ss_conf 86999897-888999999999669988799993889 No 106 >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou Probab=96.23 E-value=0.026 Score=33.50 Aligned_cols=96 Identities=9% Similarity=0.091 Sum_probs=61.4 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC-------------------------- Q ss_conf 7999758867899999998629972899---------------99653007860-------------------------- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR-------------------------- 41 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~-------------------------- 41 (311) ||.|||| |-.|-|+++.|..--.-+|. ++..++..|+. T Consensus 1 KVlvvGa-GglGce~~k~La~~Gvg~i~iiD~D~Ie~SNLnRQfLf~~~dvGk~Ka~vAa~~l~~~Np~~~I~~~~~~v~ 79 (234) T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9899948-887999999999839986999759900567701302446442688229999999998789977999805568 Q ss_pred ----CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHH Q ss_conf ----066774799899993898378999999861258489822763035554311002100047 Q gi|254780294|r 42 ----YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKS 101 (311) Q Consensus 42 ----~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~ 101 (311) +.+++++++|+|+.|+++-.++.|+....-.- .+..||-+. ..++-.+-.++|...+- T Consensus 80 ~e~~~~~~f~~~~DvVi~alDN~~aR~~vN~~c~~~-~~PLIegGt-~G~~Gqv~~IiP~~T~C 141 (234) T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFL-IVPLIESGT-EGFKGNAQVILPGMTEC 141 (234) T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHH-CCCEEEECC-CCCEEEEEEEECCCCCC T ss_conf 621057988852999998857888999999999980-998597202-46147999983899778 No 107 >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen.dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process. Probab=96.16 E-value=0.0073 Score=36.96 Aligned_cols=83 Identities=14% Similarity=0.309 Sum_probs=58.9 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCH------------------------HHHCCC------ Q ss_conf 79997588678999999986299728999965300--7860066------------------------774799------ Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYRE------------------------DLLNAA------ 50 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~~------------------------~~~~~~------ 50 (311) ||.|.||+|.+|++|.+.|.+ +..+...+.++.. -|.+... ....+| T Consensus 1 rilitGa~GQlG~~L~~~l~~-~g~~~~~~~~~~~~~~~~~~~~~Dl~dP~~l~~~~r~~~Pd~vvntAAYT~VD~AE~~ 79 (317) T TIGR01214 1 RILITGANGQLGRELVQQLSK-PGRVVVALTRSTRLKLAARWSQLDLTDPEALEELLRAIRPDAVVNTAAYTDVDGAESD 79 (317) T ss_pred CEEEECCCCHHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCEEEECCHHCCCCCCCCC T ss_conf 978873875679999997078-8827864368777611336544062246889999985287537623011010000377 Q ss_pred -CEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH Q ss_conf -899993898378999999861258489822763035554 Q gi|254780294|r 51 -DVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAP 89 (311) Q Consensus 51 -Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~ 89 (311) |.+ |+.-.-.+..+|..+.+.| .++|=.|.||=+|- T Consensus 80 ~~~A-yavNa~A~~~lA~~A~~~G--a~~vh~STDYVFDG 116 (317) T TIGR01214 80 PEKA-YAVNALAPQNLARAAARVG--ARLVHISTDYVFDG 116 (317) T ss_pred HHHH-HHHHHHHHHHHHHHHHHCC--CEEEEEEECEEECC T ss_conf 7787-6574078999999998669--15999863423447 No 108 >PRK08229 2-dehydropantoate 2-reductase; Provisional Probab=96.12 E-value=0.037 Score=32.61 Aligned_cols=66 Identities=21% Similarity=0.299 Sum_probs=44.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC-------------------HHHHCCCCEEEE Q ss_conf 9079997588678999999986299728999965300------786006-------------------677479989999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR-------------------EDLLNAADVSIL 55 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~-------------------~~~~~~~Divf~ 55 (311) |.||+|+|| |.+|.-+=-.|.+. ..++.+++..+. .|.++. ......+|++|+ T Consensus 2 mmkI~IiGa-GAvG~~~a~~L~~a-G~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv 79 (341) T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAA-GADVTLIGRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLV 79 (341) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEE T ss_conf 477999896-79999999999858-9987999567899999967909963899768963661561488656589998999 Q ss_pred CCCCHHHHHHHHH Q ss_conf 3898378999999 Q gi|254780294|r 56 CLPDVASLEIIQL 68 (311) Q Consensus 56 a~p~~~s~~~~~~ 68 (311) |+=.-...+.++. T Consensus 80 ~vKa~~~~~a~~~ 92 (341) T PRK08229 80 TVKSAATADAAAA 92 (341) T ss_pred EECCCCHHHHHHH T ss_conf 7075788999999 No 109 >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas Probab=96.12 E-value=0.063 Score=31.14 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=39.1 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCCC Q ss_conf 99975886789999999862997289999653007--8600-------------------66774799899993898 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLPD 59 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p~ 59 (311) |+|||| |.||..+--.|..++..||.++.-.+.. |... .-++++++|+++.+++. T Consensus 1 V~IIGa-G~VG~~~a~~l~~~~~~el~L~D~~~~~a~g~a~DL~~~~~~~~~~~~v~~~~d~~~~~daDvvVitaG~ 76 (300) T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300) T ss_pred CEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHCCCCEEEEECCC T ss_conf 989896-8889999999985799679998099980057988776132015898589947887994799899990677 No 110 >COG1042 Acyl-CoA synthetase (NDP forming) [Energy production and conversion] Probab=96.11 E-value=0.055 Score=31.52 Aligned_cols=112 Identities=19% Similarity=0.277 Sum_probs=73.9 Q ss_pred EEEEECCCC---HHHHHHHHHHHCCCCEEEEEEECCC--CCCCC-CC--HHHHCCCCEEEECCCCHHHHHHHHHHHHCCC Q ss_conf 799975886---7899999998629972899996530--07860-06--6774799899993898378999999861258 Q gi|254780294|r 3 KIFIDGEHG---TTGLKIRSRIVQRKDLCLLSIPCEE--RHNLR-YR--EDLLNAADVSILCLPDVASLEIIQLIKKNGI 74 (311) Q Consensus 3 kVaIvGATG---~vG~~li~lL~~hp~~~l~~l~s~~--~ag~~-~~--~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~ 74 (311) .||++||++ .+|.+.++.|.+...-.+.-+.-.. -.|.+ |. .+.....|++|.++|...+.+....+-++|. T Consensus 12 svavigas~~~~~vg~~i~~nL~~~g~g~i~PVnp~~~~v~G~~ay~s~~~lp~~~dlav~~v~~~~~~~i~~~~~~kGv 91 (598) T COG1042 12 SIAVIGASERPGKLGYEILRNLLEYGQGKIYPVNPKYDEVLGVKAYTSVADLPDAPDLAVIVVPAKVVPEIVHELGEKGV 91 (598) T ss_pred EEEEEECCCCCCHHHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCHHHHCCCCCCCEEEEECHHHHHHHHHHHCCCCC T ss_conf 37887146875215799999998568885574276532336631464075578887706898524456899987200587 Q ss_pred CEEEECCCCCHHHHHH-HHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf 4898227630355543-1100210004776520496077258421 Q gi|254780294|r 75 NSRIIDTSTAHRIAPG-WVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 75 ~~~vid~ss~~R~~~~-vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) ...|+. ++-||-... ..-...++.+- ..+....+--|||. T Consensus 92 ~~~i~i-s~gf~e~~~~~~~~e~~~~~~---a~~~~~rligPn~~ 132 (598) T COG1042 92 KGAIVI-SAGFREAGEEGMELEKELVEA---ARKYGMRIIGPNCL 132 (598) T ss_pred CEEEEE-CHHHHHHHHHHHHHHHHHHHH---HHHCCCEEECCCCC T ss_conf 358996-245678877676778899999---88559638623324 No 111 >PRK00066 ldh L-lactate dehydrogenase; Reviewed Probab=96.05 E-value=0.099 Score=29.95 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=37.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCCC--CCCC-----------------CHHHHCCCCEEEECCC Q ss_conf 0799975886789999999862997-289999653007--8600-----------------6677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEERH--NLRY-----------------REDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~a--g~~~-----------------~~~~~~~~Divf~a~p 58 (311) .||+|||| |.||..+--.|..++. .||.++.-.+.. |+.. +-++.+++|+++.+++ T Consensus 7 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiD~~~~~a~g~a~Dl~h~~~~~~~~~i~~gdy~~~~daDvVVitAG 82 (315) T PRK00066 7 NKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCHHHHCCCCEEEECCC T ss_conf 84999997-98899999999866998889998089871078999888541236884797399999679999998999 No 112 >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] Probab=96.01 E-value=0.042 Score=32.23 Aligned_cols=81 Identities=21% Similarity=0.348 Sum_probs=55.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------CCCCC------C---------HHHHCCCCEEEEC Q ss_conf 9079997588678999999986299728999965300---------78600------6---------6774799899993 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------HNLRY------R---------EDLLNAADVSILC 56 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------ag~~~------~---------~~~~~~~Divf~a 56 (311) |.||+|+|| |.=|..|-.+|.+.- .+++...-++. ...+| . .+..+++|+++++ T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng-~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~a 78 (329) T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNG-HEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIA 78 (329) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEE T ss_conf 961899817-837999999999669-846999628999999973476701059962886322246899997229999997 Q ss_pred CCCHHHHHHHHHHH---HCCCCEEEECCCCCH Q ss_conf 89837899999986---125848982276303 Q gi|254780294|r 57 LPDVASLEIIQLIK---KNGINSRIIDTSTAH 85 (311) Q Consensus 57 ~p~~~s~~~~~~~~---~~g~~~~vid~ss~~ 85 (311) +|+..-++++..+. ..+ ..++..+.-+ T Consensus 79 vPs~~~r~v~~~l~~~l~~~--~~iv~~sKGi 108 (329) T COG0240 79 VPSQALREVLRQLKPLLLKD--AIIVSATKGL 108 (329) T ss_pred CCHHHHHHHHHHHHHHCCCC--CEEEEEECCC T ss_conf 87578999999876433678--7499974465 No 113 >PRK00045 hemA glutamyl-tRNA reductase; Reviewed Probab=96.00 E-value=0.037 Score=32.60 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=56.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-------------HHHHCCCCEEEECCCCHH---HHHH Q ss_conf 079997588678999999986299728999965300786006-------------677479989999389837---8999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-------------EDLLNAADVSILCLPDVA---SLEI 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-------------~~~~~~~Divf~a~p~~~---s~~~ 65 (311) .||.|||| |-.|+...+-|.++..-+++...-+......+. ...+.++|++|+|++... .++. T Consensus 183 ~~vlviGa-Gem~~l~~k~L~~~g~~~i~v~nRt~~ra~~la~~~~~~~~~~~~l~~~l~~~DvvisaT~s~~~ii~~~~ 261 (429) T PRK00045 183 KKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGAEAIPLEELPEALAEADIVISSTAAPHPIITKGM 261 (429) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCHHH T ss_conf 65999767-48999999999855998499975867789999997598897499999999658999994489975027999 Q ss_pred HHHHHHC--CCCEEEECCCCCHHHHHHHH Q ss_conf 9998612--58489822763035554311 Q gi|254780294|r 66 IQLIKKN--GINSRIIDTSTAHRIAPGWV 92 (311) Q Consensus 66 ~~~~~~~--g~~~~vid~ss~~R~~~~vp 92 (311) .+..... +....+||.+-.--.||.+. T Consensus 262 ~~~~~~~r~~~~~~iiDLavPRdidp~v~ 290 (429) T PRK00045 262 VERALKQRRHRPLLLIDLAVPRDIEPEVG 290 (429) T ss_pred HHHHHHHCCCCCEEEEECCCCCCCCHHHC T ss_conf 99998734699569996168877744344 No 114 >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Probab=95.94 E-value=0.024 Score=33.77 Aligned_cols=112 Identities=11% Similarity=0.081 Sum_probs=72.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC-------------------------- Q ss_conf 79997588678999999986299728999---------------9653007860-------------------------- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR-------------------------- 41 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~-------------------------- 41 (311) ||.|||| |-.|-|+++.|..--..+|+. |..++..|+. T Consensus 1 KVlvvGa-GglG~e~lk~La~~Gvg~i~ivD~D~Ie~SNLnRQfLf~~~diGk~Ka~~a~~~l~~~Np~v~I~~~~~~i~ 79 (312) T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK 79 (312) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 9899888-888999999999828985999719922610146682768221887099999999998888967998616766 Q ss_pred ---CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCC Q ss_conf ---06677479989999389837899999986125848982276303555431100210004776520496077258421 Q gi|254780294|r 42 ---YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCY 118 (311) Q Consensus 42 ---~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~ 118 (311) +..+++++.|+|+.|+++-.++.|+....-.- ....||- +...+.-.+-.++|...+-..- ..+..-.+-|-|+ T Consensus 80 ~~~~~~~f~~~~DvVi~alDN~~aR~~vN~~C~~~-~~PlIeg-Gt~G~~Gqv~viiP~~T~cY~c-~~~~~~~~~P~CT 156 (312) T cd01489 80 DPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAA-DVPLIES-GTTGFLGQVQVIKKGKTECYEC-QPKETPKTFPVCT 156 (312) T ss_pred CCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEE-ECCCCEEEEEEEECCCCCCCCC-CCCCCCCCCCEEE T ss_conf 86434988962999997667899999999999983-9975972-0246413799984897567788-7899888886041 No 115 >PRK08374 homoserine dehydrogenase; Provisional Probab=95.93 E-value=0.063 Score=31.14 Aligned_cols=80 Identities=16% Similarity=0.245 Sum_probs=55.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-----CEEEEEEECCCCC---CC-------------CCC------------HHHH- Q ss_conf 079997588678999999986299-----7289999653007---86-------------006------------6774- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-----DLCLLSIPCEERH---NL-------------RYR------------EDLL- 47 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-----~~~l~~l~s~~~a---g~-------------~~~------------~~~~- 47 (311) +||||+|- |.||+.++++|.++. .+++..++.++.. +. +.. ++.. T Consensus 3 i~I~l~G~-G~VG~~~~~~L~~~~~~~g~~l~vv~i~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 81 (316) T PRK08374 3 VKVSLFGF-GTVGRALAEILAEKSRVFGVELKVVSITDRSGTVWGDFDLLEAKEVKESTGKLSNIGDYEVYNFTPEEIVE 81 (316) T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCHHHHHC T ss_conf 12999933-88999999999971887298659999995567634565556655533202543445530120489899834 Q ss_pred -CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf -7998999938983789999998612584898227630 Q gi|254780294|r 48 -NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 48 -~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~ 84 (311) .+.|+++=+.+.+.+.++...+.++|.. ||....+ T Consensus 82 ~~~~dvvVd~t~~~~~~~~~~~al~~G~h--VVTANK~ 117 (316) T PRK08374 82 EVDPDIVVDVSSWDEAHEWYLTALKEGKS--VVTSNKP 117 (316) T ss_pred CCCCCEEEECCCCHHHHHHHHHHHHCCCC--EECCCHH T ss_conf 88999899879996999999999988992--9978869 No 116 >pfam01073 3Beta_HSD 3-beta hydroxysteroid dehydrogenase/isomerase family. The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Probab=95.91 E-value=0.055 Score=31.52 Aligned_cols=30 Identities=13% Similarity=0.137 Sum_probs=24.5 Q ss_pred EECCCCHHHHHHHHHHHCC-CCEEEEEEECC Q ss_conf 9758867899999998629-97289999653 Q gi|254780294|r 6 IDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE 35 (311) Q Consensus 6 IvGATG~vG~~li~lL~~h-p~~~l~~l~s~ 35 (311) |-|+||++|+.|++.|.++ +..+++.+.-. T Consensus 2 VTGg~GFIGs~lv~~Ll~~g~~~~V~~~d~~ 32 (280) T pfam01073 2 VTGGGGFLGRHIVRLLLREGELQEVRVFDLR 32 (280) T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 0586759999999999977997579998788 No 117 >PRK11559 garR tartronate semialdehyde reductase; Provisional Probab=95.88 E-value=0.027 Score=33.44 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=53.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-------CC---HHHHCCCCEEEECCCCHHHHH-HHH--- Q ss_conf 0799975886789999999862997289999653007860-------06---677479989999389837899-999--- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-------YR---EDLLNAADVSILCLPDVASLE-IIQ--- 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-------~~---~~~~~~~Divf~a~p~~~s~~-~~~--- 67 (311) .|||+||- |.-|..|-+-|.+. .+++....-+.++-.. .. .+...++|++|+|+|++..-+ ... T Consensus 2 MkIgfIGl-G~MG~~ma~~L~~~-G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~~dvvi~~l~~~~~v~~v~~g~~ 79 (295) T PRK11559 2 MKVGFIGL-GIMGKPMSKNLLKA-GYSLVVYDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN 79 (295) T ss_pred CEEEEECC-HHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHCCCCCCCCHHHHHHCCCEEEEECCCCCCHHHHHHCCC T ss_conf 78999840-57699999999978-99589992999999999985992039999998438878996689810776630776 Q ss_pred ---HHHHCCCCEEEECCCCC Q ss_conf ---98612584898227630 Q gi|254780294|r 68 ---LIKKNGINSRIIDTSTA 84 (311) Q Consensus 68 ---~~~~~g~~~~vid~ss~ 84 (311) .....| ..+||.|.- T Consensus 80 gi~~~~~~g--~iiid~sT~ 97 (295) T PRK11559 80 GIIEGAKPG--TVLIDMSSI 97 (295) T ss_pred CCHHCCCCC--CEEEECCCC T ss_conf 601138999--889989999 No 118 >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II; InterPro: IPR006436 This family describes the type II glyceraldehyde-3-phosphate dehydrogenases which are limited to archaea. These enzymes catalyze the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. In archaea, either NAD or NADP may be utilised as the cofactor.; GO: 0008943 glyceraldehyde-3-phosphate dehydrogenase activity, 0050661 NADP binding, 0051287 NAD binding, 0006096 glycolysis, 0005737 cytoplasm. Probab=95.85 E-value=0.13 Score=29.30 Aligned_cols=170 Identities=15% Similarity=0.199 Sum_probs=109.4 Q ss_pred CCCCCC---HHHHCCCCEEEECCCCHHHHHHHH-HHHHCCCCEE--------EECCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 786006---677479989999389837899999-9861258489--------8227630355543110021000477652 Q gi|254780294|r 38 HNLRYR---EDLLNAADVSILCLPDVASLEIIQ-LIKKNGINSR--------IIDTSTAHRIAPGWVYGFPEMDKSQKEK 105 (311) Q Consensus 38 ag~~~~---~~~~~~~Divf~a~p~~~s~~~~~-~~~~~g~~~~--------vid~ss~~R~~~~vpl~vPEvN~~~~~~ 105 (311) +|-++. +++++.+||++=|+|.|+-.++=+ ...+.|.++. ++|.|-. .--| .+. T Consensus 61 aGi~V~GT~edL~ek~DIvVD~TP~G~GaknK~G~Yek~g~kAiFQGGEKaeva~~SF~-----------a~~N---Y~~ 126 (335) T TIGR01546 61 AGIKVAGTVEDLLEKVDIVVDATPEGVGAKNKEGIYEKLGLKAIFQGGEKAEVADISFS-----------ALAN---YEE 126 (335) T ss_pred CCCEEECCHHHHHHHCCEEEECCCCCCCCCCCCHHHHHHCCEEEEECCCCHHHHHHHHH-----------HHHH---HHH T ss_conf 68704425787310428888568787443231103665076136437830124421255-----------5510---676 Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC Q ss_conf 04960772584211331124788888503455650267651233335610000001344432234332222234444434 Q gi|254780294|r 106 IRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHL 185 (311) Q Consensus 106 ~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 185 (311) .-++.+|=---|.||+++-.|-|+-+.-+++++.-+.+ |.+-+..+-+.-+. +...|.+...=..|. T Consensus 127 alGKdY~RVVSCNTTgL~RTln~ind~~~v~kVrAv~v----------RRaADp~~vKkGPI---NaivP~P~TvPSHHg 193 (335) T TIGR01546 127 ALGKDYVRVVSCNTTGLVRTLNAINDLSKVEKVRAVMV----------RRAADPKEVKKGPI---NAIVPDPATVPSHHG 193 (335) T ss_pred HHCCCEEEEEEECHHHHHHHHHHHHHHCCCCEEEEEEE----------ECCCCHHHCCCCCC---CCCCCCCCCCCCCCC T ss_conf 31786389984162678876643323306105899998----------53789334261873---653783178798877 Q ss_pred CCHHHHCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHH Q ss_conf 20133216711368875203433202789999863257754489988665422 Q gi|254780294|r 186 PEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEY 238 (311) Q Consensus 186 ~e~~~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~ 238 (311) |....... ..++.-....+|..-=|.+.+.++ +.+.++.+|+.+.++.. T Consensus 194 pDV~tVi~-~lnI~TmA~~vPTTlMH~H~i~ve---Lk~~v~~~Di~d~lenT 242 (335) T TIGR01546 194 PDVQTVIR-DLNIATMALIVPTTLMHVHSIMVE---LKDKVEKEDILDVLENT 242 (335) T ss_pred CCHHHHHC-CCCCCEEEEECCCHHCCCCEEEEE---ECCCCCHHHHHHHHCCC T ss_conf 64243412-358001234314012141014677---35765645687653288 No 119 >cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot Probab=95.85 E-value=0.076 Score=30.65 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=37.4 Q ss_pred EEEECCCCHHHHHHHHHHHCCCC-EEEEEEECCCC--CCCCC------------------CHHHHCCCCEEEECCCC Q ss_conf 99975886789999999862997-28999965300--78600------------------66774799899993898 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKD-LCLLSIPCEER--HNLRY------------------REDLLNAADVSILCLPD 59 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~-~~l~~l~s~~~--ag~~~------------------~~~~~~~~Divf~a~p~ 59 (311) |+|+|| |.||+.+--.|..++. -||.++.-.+. .|... .-++++++|+++.+++. T Consensus 1 V~IIGa-G~VG~~~A~~l~~~~l~~el~L~Di~~~~a~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~daDvvVitaG~ 76 (300) T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA 76 (300) T ss_pred CEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCCC T ss_conf 989896-8899999999986799887999818998115688887725634688539827988996799999987898 No 120 >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. Probab=95.84 E-value=0.029 Score=33.25 Aligned_cols=95 Identities=9% Similarity=0.089 Sum_probs=58.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-----CCEEEEEE---------------ECCCCCCCC--------------------- Q ss_conf 7999758867899999998629-----97289999---------------653007860--------------------- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-----KDLCLLSI---------------PCEERHNLR--------------------- 41 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-----p~~~l~~l---------------~s~~~ag~~--------------------- 41 (311) ||-+||| |..|-|+++.|+-- |..+++.+ ..++..|+. T Consensus 1 kvlvVGA-GgIGCEllKnlal~G~~~~~~G~i~v~D~D~Ie~SNLnRQFLFr~~digk~Ks~vA~~~v~~~np~~~i~~~ 79 (435) T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEE T ss_conf 9899937-764189999999838786898808997088473357534427564448973999999999987899747860 Q ss_pred -----------CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCH Q ss_conf -----------06677479989999389837899999986125848982276303555431100210004 Q gi|254780294|r 42 -----------YREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDK 100 (311) Q Consensus 42 -----------~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~ 100 (311) +.++++++.|+|+.||++-.++.|+....-.- .+..||. +..-+.-.+..++|.+.+ T Consensus 80 ~~~v~~~te~~f~~~f~~~~d~v~naLDNv~aR~yv~~~Cv~~-~~PLiEs-GT~G~kG~vqviiP~~Te 147 (435) T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYY-RKPLLES-GTLGTKGNTQVVIPHLTE 147 (435) T ss_pred CCCCCCCCCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHC-CCCEEEC-CCCCCCCCEEEEECCCCC T ss_conf 2545677423367767843889998857889999999999974-9983744-678767536998378622 No 121 >PRK06270 homoserine dehydrogenase; Provisional Probab=95.83 E-value=0.051 Score=31.71 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=52.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECCCCC-----CCC-------------C----------C- Q ss_conf 079997588678999999986299---------7289999653007-----860-------------0----------6- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCEERH-----NLR-------------Y----------R- 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~~~a-----g~~-------------~----------~- 43 (311) +||+|+|. |.||+.++++|.++. .+++..++.++.. |.. + . T Consensus 3 i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~v~~i~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (342) T PRK06270 3 MKIALVGF-GGVGQGLAELLAMKNEYLKKEYGLDLKVVAIADSSGAAIDPNGLDLELALKVKEETGKLADYPEGGGEIDG 81 (342) T ss_pred CCEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCH T ss_conf 31999876-88999999999987999999849978999999165433576678989998766411650003200012789 Q ss_pred HHHH--CCCCEEEECC-----CCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 6774--7998999938-----98378999999861258489822763 Q gi|254780294|r 44 EDLL--NAADVSILCL-----PDVASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 44 ~~~~--~~~Divf~a~-----p~~~s~~~~~~~~~~g~~~~vid~ss 83 (311) .+.+ .++|+++=++ +.+.+.+|..++.++|.. ||.... T Consensus 82 ~~~~~~~~~dvvve~t~~~~~~~e~a~~~~~~aL~~G~~--VVTANK 126 (342) T PRK06270 82 LEVIKSAEADVLVEATPTNIETGEPALSHCRKALERGKH--VVTSNK 126 (342) T ss_pred HHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCE--EECCCC T ss_conf 998427799989993044677748899999999977994--999887 No 122 >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=95.83 E-value=0.094 Score=30.09 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=38.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCC--CCCC-------------------CHHHHCCCCEEEECCC Q ss_conf 79997588678999999986299-7289999653007--8600-------------------6677479989999389 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERH--NLRY-------------------REDLLNAADVSILCLP 58 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~a--g~~~-------------------~~~~~~~~Divf~a~p 58 (311) ||+|||| |.||..+--.|..++ .-||.++.-.+.. |+.. .-++.+++|+++.+++ T Consensus 1 KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~Di~~~~a~g~a~Dl~h~~~~~~~~~~~~~~~~y~~~~~aDiVVitaG 77 (307) T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCEEEECCC T ss_conf 9899996-9899999999985699887999928898237999987612035899865866799899469999998677 No 123 >pfam03447 NAD_binding_3 Homoserine dehydrogenase, NAD binding domain. This domain adopts a Rossmann NAD binding fold. The C-terminal domain of homoserine dehydrogenase contributes a single helix to this structural domain, which is not included in the Pfam model. Probab=95.78 E-value=0.066 Score=31.03 Aligned_cols=70 Identities=20% Similarity=0.329 Sum_probs=51.4 Q ss_pred CHHHHHHHHHHHCCC---CEEEEEEECCCC--CCCC-------CC---HHHHC--CCCEEEECCCCHHHHHHHHHHHHCC Q ss_conf 678999999986299---728999965300--7860-------06---67747--9989999389837899999986125 Q gi|254780294|r 11 GTTGLKIRSRIVQRK---DLCLLSIPCEER--HNLR-------YR---EDLLN--AADVSILCLPDVASLEIIQLIKKNG 73 (311) Q Consensus 11 G~vG~~li~lL~~hp---~~~l~~l~s~~~--ag~~-------~~---~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g 73 (311) |.||+.+.++|.++. .+++..++.+.. +... +. ++.+. ++|+++=|.|.+.+.+++..+.++| T Consensus 3 G~VG~~v~~~l~~~~~~~~~~l~~v~~r~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVVE~~g~~~~~~~~~~aL~~G 82 (116) T pfam03447 3 GAIGSGLLELLLRQQEEIPLELVAVADRDLLSKARAALLGDEPVTLDLDDLVADPRPDVVVECASSEAVAEYVLKALKAG 82 (116) T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCCCCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCC T ss_conf 70289999999949203567999998478343232124666715779999961889989998899489999999999879 Q ss_pred CCEEEECCC Q ss_conf 848982276 Q gi|254780294|r 74 INSRIIDTS 82 (311) Q Consensus 74 ~~~~vid~s 82 (311) .. |+-.+ T Consensus 83 kh--VVTaN 89 (116) T pfam03447 83 KH--VVTAS 89 (116) T ss_pred CE--EEEEC T ss_conf 98--99907 No 124 >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo Probab=95.72 E-value=0.06 Score=31.29 Aligned_cols=79 Identities=14% Similarity=0.115 Sum_probs=50.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC--------CC--------------CHHHHCCCCEEEECCCC Q ss_conf 079997588678999999986299728999965300786--------00--------------66774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL--------RY--------------REDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~--------~~--------------~~~~~~~~Divf~a~p~ 59 (311) .++.|+|+||-||+..-++|.+. -.++++++-+...-+ ++ ....+.+.|++|.+... T Consensus 29 ~~~~V~G~tG~vG~~~A~~lA~~-Ga~v~lv~R~~ek~~~~a~~i~~r~g~~~~~~~~~~~~~~~~~l~~adiV~~a~aA 107 (194) T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAA 107 (194) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHH T ss_conf 88999858857899999999983-99799995878889999999999709873113578877899774669899964277 Q ss_pred HHHHHHHH-HHHHCCCCEEEECCCC Q ss_conf 37899999-9861258489822763 Q gi|254780294|r 60 VASLEIIQ-LIKKNGINSRIIDTST 83 (311) Q Consensus 60 ~~s~~~~~-~~~~~g~~~~vid~ss 83 (311) ++-.--.+ +..+.+ .+++|... T Consensus 108 Gv~~~~~~~~~~k~l--~Vv~DVNA 130 (194) T cd01078 108 GVELLEKLAWAPKPL--AVAADVNA 130 (194) T ss_pred HHHHHHHHHHCCCCC--EEEEECCC T ss_conf 788878888508886--59986589 No 125 >pfam01370 Epimerase NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Probab=95.67 E-value=0.14 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=24.2 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 99975886789999999862997289999653 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |-|.||||++|+.|++.|.++ ..++..+.-+ T Consensus 1 ILItGasGfiG~~l~~~L~~~-g~~v~~~~r~ 31 (235) T pfam01370 1 ILVTGGTGFIGSALVRRLLQE-GYEVIVLGRR 31 (235) T ss_pred EEEECCCCHHHHHHHHHHHHC-CCEEEEEECC T ss_conf 799728979999999999978-7989999899 No 126 >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=95.64 E-value=0.095 Score=30.05 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=57.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CC----------------CHHHH Q ss_conf 9079997588678999999986299728999965300786-----------------00----------------66774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RY----------------REDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~----------------~~~~~ 47 (311) |.||||||| |..|+.+-.+++.+ .+++.++..+..+-. ++ +-+.+ T Consensus 3 i~~VaViGa-G~mG~~IA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 80 (282) T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVA-GYDVVMVDISDEAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDDL 80 (282) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHH T ss_conf 268999897-88999999999957-9938999799899999999999999999970886426699999526366888896 Q ss_pred CCCCEEEECCCCHHHHHH--HHHHHHC-CCCEEEECCCCCHHHHH Q ss_conf 799899993898378999--9998612-58489822763035554 Q gi|254780294|r 48 NAADVSILCLPDVASLEI--IQLIKKN-GINSRIIDTSTAHRIAP 89 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~~--~~~~~~~-g~~~~vid~ss~~R~~~ 89 (311) +++|+|+=|.|....-+- -.++.+. ..++.+-+|+|.+.... T Consensus 81 ~~aDlViEav~E~l~iK~~vf~~le~~~~~~~IlaSnTSsl~is~ 125 (282) T PRK05808 81 KDADLVIEAAVENMDIKKKIFAQLDEIAKPEAILATNTSSLSITE 125 (282) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH T ss_conf 759999987756345569999999955799848997588776699 No 127 >COG3268 Uncharacterized conserved protein [Function unknown] Probab=95.56 E-value=0.15 Score=28.85 Aligned_cols=142 Identities=15% Similarity=0.131 Sum_probs=86.8 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------CCCC----------CHHHHCCCCEEEECCCC--HH Q ss_conf 799975886789999999862997289999653007---------8600----------66774799899993898--37 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------NLRY----------REDLLNAADVSILCLPD--VA 61 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g~~~----------~~~~~~~~Divf~a~p~--~~ 61 (311) -+=|.|||||+|.-..+-|..| +... .|++++++ |+.. -+...+..++|+.|++. .. T Consensus 8 d~iiYGAtGy~G~lvae~l~~~-g~~~-aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt~~ 85 (382) T COG3268 8 DIIIYGATGYAGGLVAEYLARE-GLTA-ALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYTRY 85 (382) T ss_pred EEEEECCCCCHHHHHHHHHHHC-CCCH-HHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCEEEEECCCCCCCC T ss_conf 3899746552158999999974-8864-3216888999889985096644467788899999974266899614661202 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC----- Q ss_conf 899999986125848982276303555431100210004776520496077258421133112478888850345----- Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLP----- 136 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~----- 136 (311) +..++...+..|. -+.|.++.--.-. ..+--.+.++ .-.+.+||.+-|--.++.=+.++.|++..... T Consensus 86 g~plv~aC~~~GT--dY~DiTGEi~~fe---~~i~~yh~~A--~~~Ga~Ii~~cGFDsIPsDl~v~~l~~~~~~d~~~~~ 158 (382) T COG3268 86 GEPLVAACAAAGT--DYADITGEIMFFE---NSIDLYHAQA--ADAGARIIPGCGFDSIPSDLGVYALLKQALPDGTEEL 158 (382) T ss_pred CCHHHHHHHHHCC--CEEECCCCHHHHH---HHHHHHHHHH--HHCCCEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCH T ss_conf 6479999997198--7241356179999---9988877788--7559789666777767640189999986476444422 Q ss_pred -CC-CCEEEEEECCCCCCC Q ss_conf -56-502676512333356 Q gi|254780294|r 137 -DR-YPITINAVSGYTGGG 153 (311) Q Consensus 137 -~~-~~~~~~~~sg~sgaG 153 (311) +. ..+-.++-+|+|+.- T Consensus 159 ~~t~l~l~s~t~~g~S~GT 177 (382) T COG3268 159 IATHLALGSFTGSGISGGT 177 (382) T ss_pred HHHHEEEEECCCCCCCCCC T ss_conf 3321001312567746520 No 128 >PRK12367 short chain dehydrogenase; Provisional Probab=95.53 E-value=0.063 Score=31.13 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=37.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC------------------HHHHCCCCEEEECCC Q ss_conf 079997588678999999986299728999965300786006------------------677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR------------------EDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~------------------~~~~~~~Divf~a~p 58 (311) .+|||-||+|.-|++|.+.|..+ ...+..+++++....... +..++++|+.++.-| T Consensus 18 KtIgITGAsGaLG~AL~k~f~~~-GakVIalTh~~~~~~~~~~~~p~~wi~W~cG~E~~L~~~LkkiDILILNHG 91 (250) T PRK12367 18 KRIGITGASGALGKALTKLFRAK-GAKVIGLTHSKINNSEISDESPNEWVSWECGKESSLDKTLAKIDVLILNHG 91 (250) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCEEEECCC T ss_conf 87999678738999999999988-998999836888875455678952898434998999999875889998387 No 129 >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated Probab=95.51 E-value=0.13 Score=29.13 Aligned_cols=86 Identities=14% Similarity=0.081 Sum_probs=57.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-------------------------------CC---HHH Q ss_conf 90799975886789999999862997289999653007860-------------------------------06---677 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR-------------------------------YR---EDL 46 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~-------------------------------~~---~~~ 46 (311) |.||||||| |..|+-+-.++..+ -++++++..+..+-.+ +. ++. T Consensus 2 i~~VaViGa-G~mG~giA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~a 79 (308) T PRK06129 2 MGSIAIVGA-GLIGRAWAIVFARA-GHRVRLWDADPAALAAAPAYIAGRLEDLAAFDLLDGESPDAVLARIRATDSLADA 79 (308) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEECCCHHHH T ss_conf 987999777-89999999999858-9938999898899999999999999999976999876599998350722888998 Q ss_pred HCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH Q ss_conf 479989999389837899--9999861-25848982276303555 Q gi|254780294|r 47 LNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA 88 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~ 88 (311) ++++|+|+=|.|....-+ ....+-+ ...++.+-+|+|.+... T Consensus 80 l~~adlViEav~E~l~iK~~lf~~le~~~~~~~IlaSnTSsl~is 124 (308) T PRK06129 80 VADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLAS 124 (308) T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH T ss_conf 474999999980779999999999996569855898455538899 No 130 >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. Probab=95.48 E-value=0.12 Score=29.51 Aligned_cols=97 Identities=16% Similarity=0.219 Sum_probs=58.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-------CEEEEEEECCC--------------CCCCC------CC---------HHH Q ss_conf 79997588678999999986299-------72899996530--------------07860------06---------677 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK-------DLCLLSIPCEE--------------RHNLR------YR---------EDL 46 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp-------~~~l~~l~s~~--------------~ag~~------~~---------~~~ 46 (311) ||+|+|| |.=|..|-.+|.+.- .-++.+.+-++ +...+ +. ++. T Consensus 1 KI~ViGa-GawGTALA~~La~ng~~~~~~~~~~V~lw~r~~~~~~~~~~~~in~~~~N~~yLp~i~Lp~~i~~t~dl~~~ 79 (342) T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEA 79 (342) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHH T ss_conf 9899877-999999999999748865455786379997232210046899997449686779878489860896689999 Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHHHCCCCCCH Q ss_conf 479989999389837899999986125-848982276303555431100210004 Q gi|254780294|r 47 LNAADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWVYGFPEMDK 100 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vpl~vPEvN~ 100 (311) .+++|++++|+|+..-+++...+...- .+..+|..+.-+...++-...+.|+-. T Consensus 80 ~~~ad~ii~avPs~~~r~~~~~l~~~l~~~~~ii~~sKGle~~~~~~~~~seii~ 134 (342) T TIGR03376 80 AKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIE 134 (342) T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCHHHHHH T ss_conf 8369889996686999999999985458887389842344436998311999999 No 131 >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional Probab=95.44 E-value=0.12 Score=29.32 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=48.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CCC----CCHH-HHCCCCEEEECCC----------------- Q ss_conf 0799975886789999999862997289999653007-860----0667-7479989999389----------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-NLR----YRED-LLNAADVSILCLP----------------- 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-g~~----~~~~-~~~~~Divf~a~p----------------- 58 (311) .||-|.||+|++|++|.+.|...-......+.+.+.. ..+ +.+. .-...|+++-|+. T Consensus 1 MkILvtGa~GqLG~~l~~~l~~~~~~~~~~~~~~~~~~Dit~~~~v~~~~~~~~Pd~IIN~aA~T~VD~~E~~~~~a~~v 80 (299) T PRK09987 1 MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLL 80 (299) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHCCHHHHHCCHHHHHHH T ss_conf 97999899997899999986650988998526300136789999999999965999999883101636652489999998 Q ss_pred -CHHHHHHHHHHHHCCCCEEEECCCCCHHHHH Q ss_conf -8378999999861258489822763035554 Q gi|254780294|r 59 -DVASLEIIQLIKKNGINSRIIDTSTAHRIAP 89 (311) Q Consensus 59 -~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~ 89 (311) ....+..+..+.+.| ++.|--|++|=.|. T Consensus 81 N~~~~~~La~~~~~~~--~~lIhiSTD~VFdG 110 (299) T PRK09987 81 NATSVEAIAKAANEVG--AWVVHYSTDYVFPG 110 (299) T ss_pred HHHHHHHHHHHHHHCC--CEEEEECCCEEECC T ss_conf 8899999999999739--85999632116068 No 132 >PRK12491 pyrroline-5-carboxylate reductase; Reviewed Probab=95.41 E-value=0.038 Score=32.51 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=78.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCCCC--------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 0799975886789999999862997---289999653007--------8600---6677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEERH--------NLRY---REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~~a--------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .||+++|+ |--|+.+++=|.+... .++.....+... |.++ ..+..+++|++|+|.....-.+..+ T Consensus 3 kkI~fIG~-GnMg~Aii~Gl~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~Dii~LaVKP~~~~~vl~ 81 (272) T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVIN 81 (272) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEECCHHHHHHHCCEEEEEECHHHHHHHHH T ss_conf 86999856-79999999999978898967699969799999999997197886687999731999999957789999999 Q ss_pred HHHHCC-CCEEEECCCCCHHHH-------H--HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC-CCC Q ss_conf 986125-848982276303555-------4--31100210004776520496077258421133112478888850-345 Q gi|254780294|r 68 LIKKNG-INSRIIDTSTAHRIA-------P--GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK-LLP 136 (311) Q Consensus 68 ~~~~~g-~~~~vid~ss~~R~~-------~--~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~-~i~ 136 (311) .+...- .+..||+-.+--..+ . .+.-+.|=.+....+.. +.+-.+++|..-...... .|+... ... T Consensus 82 ~l~~~~~~~~lviSi~AGi~i~~l~~~l~~~~~vvR~MPN~~a~v~~g~--t~i~~~~~~~~~~~~~v~-~lf~~~G~~~ 158 (272) T PRK12491 82 QIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGM--SALCFNEMVTEKDIKEVL-NIFNIFGQTE 158 (272) T ss_pred HHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEECCCHHHHHCCCC--EEEECCCCCCHHHHHHHH-HHHHCCCEEE T ss_conf 9865526991899984899989999981899857997897699963696--578349989999999999-9972476499 Q ss_pred CCCCEEEEEECCCCCCCCCCC Q ss_conf 565026765123333561000 Q gi|254780294|r 137 DRYPITINAVSGYTGGGKKLI 157 (311) Q Consensus 137 ~~~~~~~~~~sg~sgaG~~~~ 157 (311) ...--.+++.++.+|.|.+-. T Consensus 159 ~~~E~~~d~~TalsGSgPAy~ 179 (272) T PRK12491 159 VVNEKLMDVVTSISGSSPAYV 179 (272) T ss_pred EECCCCHHHHHHHHCCHHHHH T ss_conf 963531101457834759999 No 133 >PRK06349 homoserine dehydrogenase; Provisional Probab=95.40 E-value=0.16 Score=28.70 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=56.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECCCC-CCC-------CCC---HHHH--CCCCEEEECCCC Q ss_conf 079997588678999999986299---------728999965300-786-------006---6774--799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCEER-HNL-------RYR---EDLL--NAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~~~-ag~-------~~~---~~~~--~~~Divf~a~p~ 59 (311) +||||+|- |.||+-+.++|.++. .+++..++.++. +-+ .+. ++.+ .++|+++=..+. T Consensus 4 ikIgl~G~-GtVG~gv~~il~~~~~~i~~~~g~~~~i~~i~~r~~~k~r~~~~~~~~~t~d~~~i~~d~~idivVEliGG 82 (432) T PRK06349 4 LKVGLLGL-GTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLSGYLLTTDPEELVNDPDIDIVVELMGG 82 (432) T ss_pred EEEEEECC-CCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCEEECCHHHHHCCCCCCEEEEECCC T ss_conf 38999987-80699999999980999999869976999999689753558999855554799999438999899996699 Q ss_pred -HHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf -3789999998612584898227630 Q gi|254780294|r 60 -VASLEIIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 60 -~~s~~~~~~~~~~g~~~~vid~ss~ 84 (311) +.+.+|+..+.++|.. |+....+ T Consensus 83 ~~~A~~~i~~AL~~Gkh--VVTANKa 106 (432) T PRK06349 83 IEPARELILAALEAGKH--VVTANKA 106 (432) T ss_pred CHHHHHHHHHHHHCCCC--EEECCHH T ss_conf 50799999999985996--8925879 No 134 >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated Probab=95.24 E-value=0.18 Score=28.29 Aligned_cols=86 Identities=13% Similarity=0.112 Sum_probs=57.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC------------------------------CHHHHCCC Q ss_conf 907999758867899999998629972899996530078600------------------------------66774799 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY------------------------------REDLLNAA 50 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~------------------------------~~~~~~~~ 50 (311) |.||||||| |..|.-.-.++..+ -++++++.-+..+.+++ -++..+++ T Consensus 2 IkkVAVIGA-GvMGsGwAa~FA~a-G~~V~L~Dp~peA~~ki~~~l~~a~~al~~L~~~~l~~~grL~~~~sL~eAV~dA 79 (489) T PRK07531 2 IMKAACIGG-GVIGGGWAARFLLN-GWDVAVFDPHPEAERIIGEVLANARRALPGLTDAPLPPEGRLSFCASLAEAVAGA 79 (489) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCHHHHHCCC T ss_conf 767999871-88689999999957-9969999488789999999999999987753203556467768638899997479 Q ss_pred CEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH Q ss_conf 89999389837899--9999861-25848982276303555 Q gi|254780294|r 51 DVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA 88 (311) Q Consensus 51 Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~ 88 (311) |+|.=|.|....-+ ....+.+ ...++.+-+|+|.+... T Consensus 80 DlVqEaVPE~LdIKq~vf~eLd~~~~~~aIiASsTSgl~~S 120 (489) T PRK07531 80 DWIQESVPERLDLKHKVLAEIEAAARPDALIGSSTSGFKPS 120 (489) T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH T ss_conf 99998785669999999999997679983898536658899 No 135 >pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family. Probab=95.18 E-value=0.2 Score=28.04 Aligned_cols=78 Identities=19% Similarity=0.216 Sum_probs=47.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC------------------------C Q ss_conf 0799975886789999999862997289999---------------653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~------------------------~ 42 (311) .||.|+|+ |-+|.++.+.|..--.-+++.+ ..++..|+. + T Consensus 2 skVlivG~-GglG~~~~~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i 80 (134) T pfam00899 2 SRVLVVGA-GGLGSPAAEYLARAGVGKLTLVDFDTVELSNLNRQILFTESDIGKPKAEVAKERLRAINPDVEVEAYPERL 80 (134) T ss_pred CEEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEECCHHHCCCEEHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 88999898-88999999999993897499998956763222722423364668810799999999778995899992567 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCC Q ss_conf 6----677479989999389837899999986-125848982276 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTS 82 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~s 82 (311) . +++++++|++|.|+++-.++.+...+. +.+ +.+|+.+ T Consensus 81 ~~~~~~~~~~~~DvVi~~~Dn~~~r~~ln~~c~~~~--ip~i~~~ 123 (134) T pfam00899 81 TPENLEELLKGADLVVDALDNFAARYLLNDACVKRG--IPLISAG 123 (134) T ss_pred CHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEE T ss_conf 977876426448899999899999999999999859--9899955 No 136 >PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional Probab=95.17 E-value=0.081 Score=30.48 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=29.9 Q ss_pred EECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC Q ss_conf 97588678999999986299-72899996530078 Q gi|254780294|r 6 IDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN 39 (311) Q Consensus 6 IvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag 39 (311) |+|+||=+|+.-++++.+|| .|++..++..++.. T Consensus 1 ILGSTGSIG~~tL~Vi~~~~~~f~V~~Lsa~~n~~ 35 (392) T PRK12464 1 ILGSTGSIGTSTLDVVAAHPERFKVVALTANYNIE 35 (392) T ss_pred CCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCHH T ss_conf 95957598999999999486870899999388799 No 137 >COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism] Probab=95.16 E-value=0.038 Score=32.49 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=33.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC Q ss_conf 9079997588678999999986299-728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ 37 (311) |.|+.|+|+||=.|..-++++.+|| .|++..++.-+. T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n 38 (385) T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKN 38 (385) T ss_pred CCEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC T ss_conf 94599971687342889999996898579999734874 No 138 >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=95.15 E-value=0.1 Score=29.84 Aligned_cols=74 Identities=22% Similarity=0.312 Sum_probs=50.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC--------CCC-----CCHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 907999758867899999998629-97289999653007--------860-----0667747998999938983789999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH--------NLR-----YREDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a--------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) |.||.|+|. |-.|.-..+.|.++ ..+.+....++... +.. ...+.+.++|+++.+-+=....... T Consensus 7 ~KkvlV~Gl-G~sG~s~a~~L~~~~~~~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~l~~~d~vV~SPGI~~~~p~~ 85 (438) T PRK04663 7 IKNVVVVGL-GITGLSVVKHLRKTQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNQDWLAEADLVVTNPGIALATPEI 85 (438) T ss_pred CCEEEEEEE-CHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEECCCCHHHHCCCCEEEECCCCCCCCHHH T ss_conf 974999906-7858999999996699846999639889368876206976972788967836899999899769989899 Q ss_pred HHHHHCCCC Q ss_conf 998612584 Q gi|254780294|r 67 QLIKKNGIN 75 (311) Q Consensus 67 ~~~~~~g~~ 75 (311) ..+.++|.. T Consensus 86 ~~a~~~~i~ 94 (438) T PRK04663 86 QPVLAKGIP 94 (438) T ss_pred HHHHHCCCC T ss_conf 999986993 No 139 >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Probab=95.11 E-value=0.069 Score=30.93 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=39.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------------HHHHCCCCEEEECCC Q ss_conf 079997588678999999986299728999965300786006----------------677479989999389 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------------EDLLNAADVSILCLP 58 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------------~~~~~~~Divf~a~p 58 (311) .+|.|.||||++|+.+++.|.++ ..+++.+..+..+-.... ...+.++|.++++.+ T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~-~~~v~~~~r~~~~~~~~~~~v~~~~~d~~~~~~l~~~~~G~~~~~~i~~ 72 (275) T COG0702 1 MKILVTGATGFVGGAVVRELLAR-GHEVRAAVRNPEAAAALAGGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275) T ss_pred CCEEEECCCCCHHHHHHHHHHHC-CCEEEEECCCCHHHHHCCCCCEEECCCCCCCHHHHHHHCCCEEEEEECC T ss_conf 93899867775799999999975-9869997368221111037852884564160779998489417999525 No 140 >COG5322 Predicted dehydrogenase [General function prediction only] Probab=95.05 E-value=0.034 Score=32.78 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=51.9 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCC-------------CCCCCCC--HHHHCCCCEEEECCCCHHHHHHH Q ss_conf 7999758867899999998629-972899996530-------------0786006--67747998999938983789999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEE-------------RHNLRYR--EDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~-------------~ag~~~~--~~~~~~~Divf~a~p~~~s~~~~ 66 (311) -|||+||||-+|-.+-|.|..| -..++.+=.++. .+|+..+ .+... .|+.|+.+....--++. T Consensus 169 tvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~-e~i~v~vAs~~~g~~I~ 247 (351) T COG5322 169 TVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQ-EDILVWVASMPKGVEIF 247 (351) T ss_pred EEEEECCCCHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCC-CCEEEEEEECCCCCEEC T ss_conf 57872478548999998763466779986351876414665532015688716415410446-13399996169985215 Q ss_pred HHHHHCCCCEEEECCCCCHHHHHHH Q ss_conf 9986125848982276303555431 Q gi|254780294|r 67 QLIKKNGINSRIIDTSTAHRIAPGW 91 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss~~R~~~~v 91 (311) |...+.| |+++|-...-..|+.+ T Consensus 248 pq~lkpg--~~ivD~g~P~dvd~~v 270 (351) T COG5322 248 PQHLKPG--CLIVDGGYPKDVDTSV 270 (351) T ss_pred HHHCCCC--EEEECCCCCCCCCCCC T ss_conf 5333697--0897487576666300 No 141 >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. Probab=95.00 E-value=0.22 Score=27.79 Aligned_cols=78 Identities=18% Similarity=0.235 Sum_probs=48.1 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC---------------CCCCCC------------------------C- Q ss_conf 799975886789999999862997289999653---------------007860------------------------0- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE---------------ERHNLR------------------------Y- 42 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~---------------~~ag~~------------------------~- 42 (311) ||.|+|+ |-+|.++.+.|..-..-+++.+... +..|+. + T Consensus 1 kVlivG~-GglG~~va~~L~~~Gv~~i~ivD~D~v~~~Nl~Rq~~~~~~dvG~~Ka~~a~~~l~~~np~v~i~~~~~~~~ 79 (143) T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS 79 (143) T ss_pred CEEEECC-CHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 9999997-989999999999937971999978987500146422589889492248999999985689838999945689 Q ss_pred ---CHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCEEEECCCC Q ss_conf ---66774799899993898378999999861-258489822763 Q gi|254780294|r 43 ---REDLLNAADVSILCLPDVASLEIIQLIKK-NGINSRIIDTST 83 (311) Q Consensus 43 ---~~~~~~~~Divf~a~p~~~s~~~~~~~~~-~g~~~~vid~ss 83 (311) .++.++++|+++-|+++-.++.+...+.. .+ ..+|+-+. T Consensus 80 ~~~~~~~~~~~dvvi~~~D~~~~r~~l~~~~~~~~--ip~i~~~~ 122 (143) T cd01483 80 EDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELG--IPVIDAGG 122 (143) T ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC--CCEEEEEC T ss_conf 64699997599999987799999999999999869--98899636 No 142 >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.98 E-value=0.2 Score=28.01 Aligned_cols=86 Identities=14% Similarity=0.125 Sum_probs=57.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC------------------------------CHHHHCCC Q ss_conf 907999758867899999998629972899996530078600------------------------------66774799 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY------------------------------REDLLNAA 50 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~------------------------------~~~~~~~~ 50 (311) +.||||||| |..|.-...++..+ -++++.+..+..+-.+. -++.++++ T Consensus 7 Ik~VaVIGa-G~MG~giAa~~a~~-G~~V~l~D~~~~a~~~~~~~i~~~~~~l~~~~~~~~~~~~~l~~~~~l~~av~~a 84 (321) T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAH-GLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADA 84 (321) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHCCC T ss_conf 887999888-78889999999947-9859999698889999999999999999866899631696501468889986359 Q ss_pred CEEEECCCCHHHHHH--HHHH-HHCCCCEEEECCCCCHHHH Q ss_conf 899993898378999--9998-6125848982276303555 Q gi|254780294|r 51 DVSILCLPDVASLEI--IQLI-KKNGINSRIIDTSTAHRIA 88 (311) Q Consensus 51 Divf~a~p~~~s~~~--~~~~-~~~g~~~~vid~ss~~R~~ 88 (311) |+|+=|.|....-+- ..++ .-...++.+-+|+|.+-.. T Consensus 85 D~ViEavpE~l~lK~~lf~~ld~~~~~~aIiASnTS~l~is 125 (321) T PRK07066 85 DFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPT 125 (321) T ss_pred CEEEECCEECHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH T ss_conf 98998776659999999999997679886785257657899 No 143 >TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein.. Probab=94.94 E-value=0.029 Score=33.27 Aligned_cols=132 Identities=15% Similarity=0.131 Sum_probs=71.1 Q ss_pred EEEECC-CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH---H---CCCCEEEECCCCHHHHHHHHHHHHCCCCE Q ss_conf 999758-8678999999986299728999965300786006677---4---79989999389837899999986125848 Q gi|254780294|r 4 IFIDGE-HGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL---L---NAADVSILCLPDVASLEIIQLIKKNGINS 76 (311) Q Consensus 4 VaIvGA-TG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~---~---~~~Divf~a~p~~~s~~~~~~~~~~g~~~ 76 (311) |.|=|| ||++|+.|.+.|.+. .-+++.|+-+....+....+. . ...|+... .+. | ..+ .+++ T Consensus 1 ~litGgnTGfiG~~L~~~L~~~-g~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~g~~~~-----~~~-W-~~l--~~~D- 69 (307) T TIGR01777 1 ILITGGNTGFIGRALTQRLTKS-GHEVTILTRSPQAESNTKKVGYKNWLAEGKLGIVIA-----ESG-W-SAL--EGAD- 69 (307) T ss_pred CEECCCCCCHHHHHHHHHHHHC-CCEEEEEEECCCCCCCHHCCCCCCCCCCCCCCCCCC-----HHC-C-CCC--CCCC- T ss_conf 9641533023789999999847-998999961686432000255445555221245207-----220-5-667--8862- Q ss_pred EEECCCCCHHHH-HHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 982276303555-4311002100047765204960772584211331124788888503455650267651233335610 Q gi|254780294|r 77 RIIDTSTAHRIA-PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKK 155 (311) Q Consensus 77 ~vid~ss~~R~~-~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~ 155 (311) .||.+++.-=++ .. +|+.+.+.+..+||- +|. .|.-+.+...-.+..+.+.-+.|++|.-|.+ T Consensus 70 aviNLAG~~i~~P~R-------Wt~~~K~~i~~SRi~------~T~---~L~~~i~~~~r~~~~P~~~isaSAvGyYG~~ 133 (307) T TIGR01777 70 AVINLAGEPIADPKR-------WTEERKQEIRDSRID------TTR---ALVEAIAAAPRAEQKPKVFISASAVGYYGHS 133 (307) T ss_pred EEEECCCCCCCCCCC-------CCHHHHHHHHHCCHH------HHH---HHHHHHHHCCCCCCCCCEEEEEEEEEEECCC T ss_conf 798556888577888-------787775756523347------899---9999998465667887168850166630689 Q ss_pred CCHHCCC Q ss_conf 0000013 Q gi|254780294|r 156 LISRMEQ 162 (311) Q Consensus 156 ~~~~~~~ 162 (311) ....+.. T Consensus 134 ~~~~~tE 140 (307) T TIGR01777 134 EDRVFTE 140 (307) T ss_pred CCCEEEC T ss_conf 9821511 No 144 >pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide. Probab=94.82 E-value=0.25 Score=27.43 Aligned_cols=53 Identities=17% Similarity=0.313 Sum_probs=32.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--CCCCCCHHHHC--CCCEEEECC Q ss_conf 9997588678999999986299728999965300--78600667747--998999938 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--HNLRYREDLLN--AADVSILCL 57 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--ag~~~~~~~~~--~~Divf~a~ 57 (311) |-|.|+||++|+.|.+.|.+. ..+++.+..++- .....-+..+. +.|++|-++ T Consensus 1 ILVtG~~GfiGs~l~~~L~~~-g~~v~~~~r~~~D~~d~~~l~~~~~~~~pd~VihlA 57 (284) T pfam04321 1 ILVTGANGQLGRELTRLLAER-GVEVVALDRPELDLTDPEAVAALVREARPDVVVNAA 57 (284) T ss_pred EEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEECC T ss_conf 699648998999999999868-998999548625788999999999864997999724 No 145 >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). Probab=94.82 E-value=0.3 Score=26.96 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=56.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C Q ss_conf 079997588678999999986299728999---------------9653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~ 42 (311) .||.|+|+ |-+|......|..--.-+|.. +.+++..|+. + T Consensus 22 s~VlivG~-GGlGs~~~~~La~~Gvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~K~~~a~~~l~~iNp~i~i~~~~~~i 100 (228) T cd00757 22 ARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERL 100 (228) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHEECHHHCCCCHHHHHHHHHHHHCCCCCCEEHHHCC T ss_conf 97899887-78899999999983997589997874556764221023786687895999999998548875303132100 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCC Q ss_conf 6----677479989999389837899999986-125848982276303555431100210 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTSTAHRIAPGWVYGFPE 97 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~ss~~R~~~~vpl~vPE 97 (311) + ++.++++|+|+-|+++-.++.+...+. +.+. .+|. ++..++.-.+-...|. T Consensus 101 ~~~~~~~~~~~~DlVid~~Dn~~~R~~ln~~~~~~~i--P~i~-g~~~g~~Gqv~~~~p~ 157 (228) T cd00757 101 DAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGK--PLVS-GAVLGFEGQVTVFIPG 157 (228) T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCC--CEEE-EEECCCEEEEEEECCC T ss_conf 5756998873798999877998899999999998399--8899-9740028689886799 No 146 >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.79 E-value=0.16 Score=28.64 Aligned_cols=118 Identities=14% Similarity=0.200 Sum_probs=67.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------------------CC-------------CCC---HHH Q ss_conf 90799975886789999999862997289999653007------------------86-------------006---677 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------------------NL-------------RYR---EDL 46 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------------------g~-------------~~~---~~~ 46 (311) |.||+|+|| |.-|..+-.++..+ -+++.++..+..+ |+ ++. ++. T Consensus 2 IkkV~ViGa-G~MG~~IA~~~a~~-G~~V~l~D~~~e~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~a 79 (289) T PRK09260 2 MEKIVVVGA-GVMGRGIAYVFASS-GFQTTLVDISQEQLASAQQEIESILEDGVALGKVTEAAAQAALARLSYSLDLKEA 79 (289) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH T ss_conf 676999796-88789999999968-9988999799899999999999999999871799989999999558766888998 Q ss_pred HCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH--------HHHHCCCCCCHHHHHHCCCCEEEECC Q ss_conf 479989999389837899--9999861-258489822763035554--------31100210004776520496077258 Q gi|254780294|r 47 LNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP--------GWVYGFPEMDKSQKEKIRSARYITNP 115 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~--------~vpl~vPEvN~~~~~~~~~~~iIanP 115 (311) ++++|+|+=|.|.....+ +..++.+ ...++.+-+|+|.+..+. +--+++==.||-++-.+-. +|..| T Consensus 80 ~~~aDlViEav~E~l~iK~~v~~~l~~~~~~~~IlaSNTSsl~is~ia~~~~~p~R~ig~HffnP~~~~~lVE--vv~g~ 157 (289) T PRK09260 80 VAGADLLIEAVPEKLEIKQAVFETADAHAPAEALIATNTSTLSPTEIASATKRPERVIGMHFFNPVHKMKLVE--LVRGL 157 (289) T ss_pred HCCCCEEEECCCCCHHHCHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHCCCHHHEEEECCCCCHHHHEEEE--ECCCC T ss_conf 4769999988868632368999998606899808985588877114554159846626412477432212356--45899 Q ss_pred CCCCCCC Q ss_conf 4211331 Q gi|254780294|r 116 GCYATGA 122 (311) Q Consensus 116 nC~~t~~ 122 (311) ..+.-.+ T Consensus 158 ~Ts~e~i 164 (289) T PRK09260 158 ETSDETV 164 (289) T ss_pred CCCHHHH T ss_conf 9999999 No 147 >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. Probab=94.77 E-value=0.17 Score=28.41 Aligned_cols=66 Identities=17% Similarity=0.141 Sum_probs=49.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC-------------------------- Q ss_conf 799975886789999999862997289999---------------653007860-------------------------- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR-------------------------- 41 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~-------------------------- 41 (311) ||-|||| |-.|.|+++-|...-..+|+.+ ...+..|+. T Consensus 1 kvlvvG~-GglG~e~~k~la~~Gvg~i~ivD~d~i~~sNL~rQflf~~~dvG~~Ka~~a~~~i~~~np~v~v~~~~~~i~ 79 (291) T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291) T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 9899928-888999999999848985999739934413565674676553687899999999998789978998505310 Q ss_pred -CCHHHHCCCCEEEECCCCHHHHHHHHHH Q ss_conf -0667747998999938983789999998 Q gi|254780294|r 42 -YREDLLNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 42 -~~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311) +.++++++.|+|+.|+++-.++.|+... T Consensus 80 ~~~~~f~~~fdvVi~~lDn~~aR~~vN~~ 108 (291) T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGT 108 (291) T ss_pred HCCHHHHHHCCEEEECCCCHHHHHHHHHH T ss_conf 07898995199999887899999999999 No 148 >PRK09117 consensus Probab=94.76 E-value=0.29 Score=27.02 Aligned_cols=118 Identities=16% Similarity=0.175 Sum_probs=67.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHH Q ss_conf 90799975886789999999862997289999653007---86--------------00----------------66774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~ 47 (311) |.||||+|| |.-|+.+-.++..+ -++++++.-+..+ +. ++ +.+.+ T Consensus 2 I~~VaViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~d~~a~ 79 (282) T PRK09117 2 IQTVGIIGA-GTMGNGIAQACAVA-GLDVVMVDISDAAVQRGLATVAGSLDRLIKKEKLTEADKAAALARIKGSTDYDAL 79 (282) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHH T ss_conf 177999897-79999999999967-9968999898899999999999999999970688778899998406567998997 Q ss_pred CCCCEEEECCCCHHHHHH--HHHHHH-CCCCEEEECCCCCHHHHHH--------HHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf 799899993898378999--999861-2584898227630355543--------11002100047765204960772584 Q gi|254780294|r 48 NAADVSILCLPDVASLEI--IQLIKK-NGINSRIIDTSTAHRIAPG--------WVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~~--~~~~~~-~g~~~~vid~ss~~R~~~~--------vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) +++|+|+=|.|....-+- -.++.+ ...++.+-+|+|.+....= --++.==.||-++-.+-. +|..|. T Consensus 80 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~ia~~~~~p~R~ig~HffnP~~~~~LVE--iv~g~~ 157 (282) T PRK09117 80 KDADLVIEAATENLDLKLKILKQLDALVGPDAIIATNTSSISITKLAAATSRPDRFIGMHFFNPVPMMALVE--LIRGLQ 157 (282) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCHHHCCCCCCCCCCCCCCEEE--ECCCCC T ss_conf 559999987858888889999999865799818986587676177887649846415545568866584488--649999 Q ss_pred CCCCCC Q ss_conf 211331 Q gi|254780294|r 117 CYATGA 122 (311) Q Consensus 117 C~~t~~ 122 (311) .+.-.. T Consensus 158 Ts~~~~ 163 (282) T PRK09117 158 TSDATH 163 (282) T ss_pred CCHHHH T ss_conf 989999 No 149 >pfam10727 Rossmann-like Rossmann-like domain. This family of proteins contain a Rossmann-like domain. Probab=94.71 E-value=0.1 Score=29.89 Aligned_cols=79 Identities=20% Similarity=0.310 Sum_probs=53.5 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-----CCC------CHHHHCCCCEEEECCCCHHHHHHHHHHHH-- Q ss_conf 99758867899999998629972899996530078-----600------66774799899993898378999999861-- Q gi|254780294|r 5 FIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN-----LRY------REDLLNAADVSILCLPDVASLEIIQLIKK-- 71 (311) Q Consensus 5 aIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag-----~~~------~~~~~~~~Divf~a~p~~~s~~~~~~~~~-- 71 (311) +|+|| |-||.-|=..|.+- -..+..+++.+.+. ..+ ..+...++|++|++.|++.-.+.+..+.. T Consensus 1 GiIGa-GrvG~~L~~al~~a-Gh~v~gv~srs~~s~~~a~~~~~~~~~~~~ev~~~adlv~itvPDd~I~~vv~~la~~~ 78 (111) T pfam10727 1 GIISA-GRVGVALGEALERA-GHVVHAISAISDASRERAERRLDSPVLPIPDVIRRAELVVLAVPDAELPGLVEGLAATV 78 (111) T ss_pred CCCCC-CHHHHHHHHHHHHC-CCEEEEEEECCHHHHHHHHHHCCCCCCCHHHHHHHCCEEEEECCHHHHHHHHHHHHHHC T ss_conf 94376-57799999999978-98289998389889999998669976795898976799999897888999999998326 Q ss_pred -CCCCEEEECCCCCHHH Q ss_conf -2584898227630355 Q gi|254780294|r 72 -NGINSRIIDTSTAHRI 87 (311) Q Consensus 72 -~g~~~~vid~ss~~R~ 87 (311) .| ..|+--|.++-. T Consensus 79 ~~G--qiV~HtSGa~g~ 93 (111) T pfam10727 79 RRG--QIVAHTSGAHGI 93 (111) T ss_pred CCC--CEEEECCCCCHH T ss_conf 799--799986687507 No 150 >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional Probab=94.71 E-value=0.25 Score=27.46 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=51.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CCCCC-------C---------HHHHCCCCEEEEC Q ss_conf 9079997588678999999986299728999965300--------78600-------6---------6774799899993 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HNLRY-------R---------EDLLNAADVSILC 56 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag~~~-------~---------~~~~~~~Divf~a 56 (311) +-||+|+|| |.=|..|-.+|.+.- -.+.+.-.++. ...+| . ++..+++|++++| T Consensus 6 ~~KI~ViGa-GawGTALA~~la~n~-~~v~w~r~~~~~~~In~~~~N~kyL~~~i~Lp~~i~~t~dl~~a~~~adiii~a 83 (340) T PRK12439 6 EPKVVVLGG-GSWGTTVASICARRG-PTLQWVRSEETAKDINDNHRNSRYLGNDVVLSDTLRATTDFTEAANCADVVVMG 83 (340) T ss_pred CCCEEEECC-CHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCEEEECCHHHHHHCCCEEEEE T ss_conf 992899896-999999999999589-989996899999999982888768998755898728978999998269989993 Q ss_pred CCCHHHHHHHHHHHHCC-CCEEEECCCCC Q ss_conf 89837899999986125-84898227630 Q gi|254780294|r 57 LPDVASLEIIQLIKKNG-INSRIIDTSTA 84 (311) Q Consensus 57 ~p~~~s~~~~~~~~~~g-~~~~vid~ss~ 84 (311) +|...-+++...+.+.- ....++..+.- T Consensus 84 vPS~~~r~~~~~l~~~l~~~~~iv~~sKG 112 (340) T PRK12439 84 VPSHGFRGVLTELAKELRPWVPVVSLVKG 112 (340) T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 68089999999998655788759973275 No 151 >KOG1430 consensus Probab=94.68 E-value=0.059 Score=31.32 Aligned_cols=37 Identities=11% Similarity=0.236 Sum_probs=31.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC Q ss_conf 907999758867899999998629-9728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ 37 (311) |..+.|+|++|+.|+.|++.|.++ +..+++.+..... T Consensus 4 ~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~ 41 (361) T KOG1430 4 KLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPT 41 (361) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCC T ss_conf 77799989833789999999984566617999536775 No 152 >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Probab=94.66 E-value=0.33 Score=26.72 Aligned_cols=35 Identities=14% Similarity=0.249 Sum_probs=28.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 799975886789999999862997289999653007 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH 38 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a 38 (311) +|-|.|+||++|..|.+.|.+. ..+++.+...... T Consensus 2 ~iLVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~ 36 (314) T COG0451 2 RILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG 36 (314) T ss_pred EEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCCC T ss_conf 6999928877799999999858-9979999178754 No 153 >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=94.61 E-value=0.11 Score=29.67 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=51.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CC---CCCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 90799975886789999999862997289999653007-------86---006677479989999389837899999986 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NL---RYREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~---~~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) |+||.|+|. |-.|+-..+.|.++- .++.....+... +. ...+..+.++|+++.+-+=.....+...+. T Consensus 3 ~KkvlV~Gl-G~SG~s~a~~L~~~g-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGi~~~~p~~~~a~ 80 (418) T PRK00683 3 LQRVVVLGL-GVTGKSVARFLAQKG-VYVIGVDNSLEALQSCPYIHERYLEGAEEFPEQVDLVVRSPGIKPYHPWVEAAV 80 (418) T ss_pred CCEEEEEEE-CHHHHHHHHHHHHCC-CEEEEECCCHHHHHHCCHHHHHCCCCHHHCCCCCCEEEECCCCCCCCHHHHHHH T ss_conf 866999808-887999999999782-989998298145454614555405623324234989998998599889999999 Q ss_pred HCCCC Q ss_conf 12584 Q gi|254780294|r 71 KNGIN 75 (311) Q Consensus 71 ~~g~~ 75 (311) +.|.. T Consensus 81 ~~~i~ 85 (418) T PRK00683 81 ALKIP 85 (418) T ss_pred HCCCC T ss_conf 86997 No 154 >KOG1203 consensus Probab=94.60 E-value=0.052 Score=31.67 Aligned_cols=37 Identities=16% Similarity=0.367 Sum_probs=29.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 90799975886789999999862997289999653007 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH 38 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a 38 (311) |.+|.++||||.|||.+++.|-++- |..+.+.-+..+ T Consensus 79 ~~~VlVvGatG~vG~~iv~~llkrg-f~vra~VRd~~~ 115 (411) T KOG1203 79 PTTVLVVGATGKVGRRIVKILLKRG-FSVRALVRDEQK 115 (411) T ss_pred CCEEEEECCCCCHHHHHHHHHHHCC-CEEEEECCCHHH T ss_conf 8749995588736399999999779-702342157365 No 155 >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.56 E-value=0.29 Score=27.03 Aligned_cols=87 Identities=14% Similarity=0.127 Sum_probs=57.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHH Q ss_conf 90799975886789999999862997289999653007---86--------------00----------------66774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~ 47 (311) +.||||||| |.-|+.+-.+++.+ -++++++..+..+ ++ .+ +-+.+ T Consensus 4 ik~VaViGA-G~MG~giA~~~a~~-G~~V~l~D~~~e~~~~~~~~i~~~l~~~~~~~~l~~~~~~~~l~~i~~~~~~~~~ 81 (292) T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALA-GYDVLLNDVSADRLESGMATINGNLARQVAKGKISEEARAAALARITTATTLDDL 81 (292) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH T ss_conf 888999896-69999999999967-9968999798899999999999999999970688889999998407776898896 Q ss_pred CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 79989999389837899--9999861-258489822763035554 Q gi|254780294|r 48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) +++|+|+=|.|....-+ ...++.+ ...++.+-+|+|.+.... T Consensus 82 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~ 126 (292) T PRK07530 82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILASNTSSISITR 126 (292) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH T ss_conf 649999988847458789899999862698848987588875056 No 156 >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.56 E-value=0.35 Score=26.57 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=57.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC------------------CC--------------CCC---HH Q ss_conf 90799975886789999999862997289999653007------------------86--------------006---67 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH------------------NL--------------RYR---ED 45 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a------------------g~--------------~~~---~~ 45 (311) |.||||||| |.-|+.+-.++..+ -++++++..+..+ ++ ++. ++ T Consensus 3 i~~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~dl~~ 80 (288) T PRK08293 3 IKKVTVAGA-GVLGSQIAFQTAFK-GFDVTIYDISEEALDAAKRRLAKLADRYVRDLHLTDEAFAAAAKNRITFTTDLAQ 80 (288) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHH T ss_conf 578999897-88999999999957-9928999898899999999999999999970599917899999807730589899 Q ss_pred HHCCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 7479989999389837899--9999861-258489822763035554 Q gi|254780294|r 46 LLNAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 46 ~~~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) .++++|+|+=|.|....-+ ...++.+ ...++.+-+|+|.+..+. T Consensus 81 a~~~aDlViEav~E~l~iK~~lf~~le~~~~~~~IlaSNTSsl~it~ 127 (288) T PRK08293 81 AVKDADLVIEAVPEDPEIKGDFYEQLAEVAPEKTIFATNSSTLLPSQ 127 (288) T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH T ss_conf 84669999997808799999999999974677669986687676579 No 157 >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional Probab=94.54 E-value=0.13 Score=29.12 Aligned_cols=75 Identities=17% Similarity=0.265 Sum_probs=53.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) ++|.|||.+..||+-|-.+|.++ ...++...|+.. + -++...+.|+++.|.|.. .-+-+...+.| ..|||- T Consensus 29 k~vvVvGrS~~VG~Pla~lL~~~-~atVt~~hs~t~-~---l~~~~~~ADIvI~a~G~p--~~i~~~~vk~G--avvIDv 99 (140) T cd05212 29 KKVLVVGRSGIVGAPLQCLLQRD-GATVYSCDWKTI-Q---LQSKVHDADVVVVGSPKP--EKVPTEWIKPG--ATVINC 99 (140) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCC-C---HHHHHHHCCEEEECCCCC--CCCCHHHCCCC--CEEEEE T ss_conf 99999999812499999999978-898999469995-9---899852349999816876--72789776799--889980 Q ss_pred CCCH Q ss_conf 6303 Q gi|254780294|r 82 STAH 85 (311) Q Consensus 82 ss~~ 85 (311) +... T Consensus 100 Gi~~ 103 (140) T cd05212 100 SPTK 103 (140) T ss_pred CCCC T ss_conf 3775 No 158 >COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism] Probab=94.52 E-value=0.28 Score=27.19 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=48.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC---------CEEEEEEECC-CCCCC--CCC--------------HH--HHCCCCE Q ss_conf 9079997588678999999986299---------7289999653-00786--006--------------67--7479989 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK---------DLCLLSIPCE-ERHNL--RYR--------------ED--LLNAADV 52 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp---------~~~l~~l~s~-~~ag~--~~~--------------~~--~~~~~Di 52 (311) +.||+|+|- |.||+.++++|.++. .+++..++.+ .+.-. ... .+ .-.++|+ T Consensus 3 ~v~v~l~G~-G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 81 (333) T COG0460 3 TVKVGLLGL-GTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV 81 (333) T ss_pred EEEEEEECC-CCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCHHHHEECCCCCCCHHHHCCCCCCE T ss_conf 489999833-7142999999998268887632872699999961530113566533234300553244276650456887 Q ss_pred EEECCCC--HHHH--HHHHHHHHCCCCEEEECCC Q ss_conf 9993898--3789--9999986125848982276 Q gi|254780294|r 53 SILCLPD--VASL--EIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 53 vf~a~p~--~~s~--~~~~~~~~~g~~~~vid~s 82 (311) ++=+.|. +.++ ++..++.+.|.. +|=-|= T Consensus 82 vve~~~~d~~~~~~~~~~~~al~~Gkh-VVTaNK 114 (333) T COG0460 82 VVELVGGDVEPAEPADLYLKALENGKH-VVTANK 114 (333) T ss_pred EEECCCCCCCCHHHHHHHHHHHHCCCE-EECCCC T ss_conf 985576668741238999999975996-997896 No 159 >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Probab=94.51 E-value=0.088 Score=30.24 Aligned_cols=58 Identities=24% Similarity=0.399 Sum_probs=41.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC-------------------C--C---HHHHCCCC Q ss_conf 079997588678999999986299728999965300------7860-------------------0--6---67747998 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR-------------------Y--R---EDLLNAAD 51 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~-------------------~--~---~~~~~~~D 51 (311) .||+|+|. ||||.-+--.|+++ .+++..+...+. .|+. + . .+...++| T Consensus 1 MkI~ViGl-GyVGl~~a~~lA~~-G~~V~g~D~d~~~i~~l~~g~~p~~E~gl~~ll~~~~~~~~l~~ttd~~~~i~~~d 78 (411) T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADL-GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD 78 (411) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCEEEECCHHHHHHHCC T ss_conf 97999897-87799999999948-99489998999999999779899789898999999986399799878899872099 Q ss_pred EEEECCCCHH Q ss_conf 9999389837 Q gi|254780294|r 52 VSILCLPDVA 61 (311) Q Consensus 52 ivf~a~p~~~ 61 (311) ++|.|+|... T Consensus 79 ii~I~V~TP~ 88 (411) T TIGR03026 79 VIIICVPTPL 88 (411) T ss_pred EEEEECCCCC T ss_conf 9999768986 No 160 >cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan. Probab=94.49 E-value=0.36 Score=26.48 Aligned_cols=97 Identities=15% Similarity=0.050 Sum_probs=70.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC---CCC-CCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE Q ss_conf 07999758867899999998629-9728999965300---786-006677479989999389837899999986125848 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER---HNL-RYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS 76 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~---ag~-~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~ 76 (311) .||.++|+|--+...+.+.|..+ |..++....+--- ... -++...-.+.|++|.+++...-..|+....+..... T Consensus 47 ~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~f~~~~~~~i~~~I~~~~~div~vglG~PkQE~~~~~~~~~l~~~ 126 (171) T cd06533 47 LRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINASGADILFVGLGAPKQELWIARHKDRLPVP 126 (171) T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC T ss_conf 74999808989999999999978899379998789998066899999998649999999679828899999999877998 Q ss_pred EEECCCCCHHHHHHHHHCCCCC Q ss_conf 9822763035554311002100 Q gi|254780294|r 77 RIIDTSTAHRIAPGWVYGFPEM 98 (311) Q Consensus 77 ~vid~ss~~R~~~~vpl~vPEv 98 (311) .++-..++|....+..-..|.+ T Consensus 127 ~~~~vGgafd~~aG~~~raP~w 148 (171) T cd06533 127 VAIGVGGSFDFLAGTVKRAPKW 148 (171) T ss_pred EEEECCEEEEHHCCCCCCCCHH T ss_conf 6986451211030784536499 No 161 >pfam03808 Glyco_tran_WecB Glycosyl transferase WecB/TagA/CpsF family. Probab=94.44 E-value=0.26 Score=27.36 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=71.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC---CCCC-CCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE Q ss_conf 07999758867899999998629-9728999965300---7860-06677479989999389837899999986125848 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER---HNLR-YREDLLNAADVSILCLPDVASLEIIQLIKKNGINS 76 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~---ag~~-~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~ 76 (311) .||.++|+|--+-..+.+.|.++ |..++....+--. .-.. ++...-.+.|++|.+++...-..|+....+..... T Consensus 49 ~~v~llG~~~~~~~~~~~~l~~~yP~l~i~g~~~g~f~~~e~~~i~~~I~~~~~div~vglG~PkQE~~~~~~~~~~~~~ 128 (172) T pfam03808 49 KRVFLLGGKPGVLEKAAARLRARYPGLRIVGTHDGYFSPEEEEAIIEAINASGPDLLFVGLGAPKQEKWIARNRARLPVP 128 (172) T ss_pred CEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCC T ss_conf 83899808889999999999988799559998799998689999999998459999999569817799999999877998 Q ss_pred EEECCCCCHHHHHHHHHCCCCC Q ss_conf 9822763035554311002100 Q gi|254780294|r 77 RIIDTSTAHRIAPGWVYGFPEM 98 (311) Q Consensus 77 ~vid~ss~~R~~~~vpl~vPEv 98 (311) +++--.++|....+..-..|.+ T Consensus 129 v~~~vGa~~d~~aG~~~raP~w 150 (172) T pfam03808 129 VFIGVGGSFDFLAGTVKRAPKW 150 (172) T ss_pred EEEECCCHHHHHHCCCCCCCHH T ss_conf 7985240124663785647799 No 162 >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase; InterPro: IPR005676 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate-semialdehyde dehydrogenase, the second enzyme in the aspartate pathway, converts aspartyl phosphate to aspartate-semialdehyde, the branch point intermediate between the lysine and threonine/methionine pathways. Based on sequence alignments, the aspartate-semialdehyde dehydrogenase family appears to have two distinct subgroups, one found in most bacteria (Gram-positve and Gram-negative), while the other is found primarily in organisms lacking peptidoglycan (archaea,fungi and some bacteria). Most studies have been performed on enzymes isolated from Gram-negative bacteria , , , . The N-terminal domain forms the active site and NADP-binding pocket, while C-terminal domain is primarily involved in hydrophobic intersubunit contacts. The catalytic mechanism involves the formation of a covalent thioester acyl-enzyme intermediate mediated through nucleophilic attack by an active site cysteine residue on the substrate aspartyl phosphate. Release of inorganic phosphate is followed by hydride transfer from NADPH to yield the product. The recently described archaeal structure suggests that the two subgroups of aspartate semi-aldehyde dehydrogenase share similar structures and have an identical catalytic mechanism, despite their relatively low sequence identity . Unlike the bacterial enzymes, the archaeal enzyme utilised both NAD and NADP as cofactor. This entry represents the subgroup of aspartate dehydrogenases found primarily in organisms lacking peptidoglycan. In addition to its role in aspartate metabolism, the enzyme from Sulfolobus solfataricus has been shown recently to exhibit RNase activity, suggesting that these enzymes may perform additional cellular functions .; GO: 0004073 aspartate-semialdehyde dehydrogenase activity, 0009086 methionine biosynthetic process, 0009088 threonine biosynthetic process. Probab=94.44 E-value=0.052 Score=31.65 Aligned_cols=94 Identities=5% Similarity=-0.136 Sum_probs=42.9 Q ss_pred CCCCCCCCCCCCCCCCCCC-CCCCCC-CHHHHCCCCEEEE-EEEEC---CCC-CCEEEEEEEEEEECCCCCCCHH----- Q ss_conf 3444322343322222344-444342-0133216711368-87520---343-3202789999863257754489----- Q gi|254780294|r 162 QKNMPDTISSNHFFYSLDL-LHKHLP-EITQYSLIKTSPM-FLPSV---GRF-PQGIAIQISLDMERLSWKTNSE----- 229 (311) Q Consensus 162 ~~~~~~~~~~~~~~~~~~~-~~~h~~-e~~~~~~~~~~~~-~~~~~---~~~-~~g~~~~v~v~~~~~~~~~~~~----- 229 (311) .|....-.++.+..+.+.- ...|+. |.+|+..+..++. -.-.- .|- +..-.+|.+|++..+|..+... T Consensus 180 mQAvSGAGY~GVp~~~I~dN~iP~I~GEE~KIe~E~~KilsGkl~~g~~~PA~~~~~at~~RVPV~~GHt~~v~v~~~~~ 259 (358) T TIGR00978 180 MQAVSGAGYPGVPSMDILDNVIPHIGGEEEKIERETLKILSGKLENGKIEPAEFEVSATTTRVPVLDGHTESVHVEFDKK 259 (358) T ss_pred ECCHHCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEECCCCCCCEEEEEEEECCC T ss_conf 20001488888754555336165506335898762133334400388464204406899874441116469999986687 Q ss_pred -HHHHHHHHHHCCCCCCEEECCCCCCC Q ss_conf -98866542200144305602787887 Q gi|254780294|r 230 -ELHSIFQEYYMGQNIVSVVPLEESRK 255 (311) Q Consensus 230 -~~~~~~~~~~~~~~~v~v~~~~~~~~ 255 (311) ++.+..+.+..-....+-+.++..|+ T Consensus 260 ~d~~EI~~~~~~f~~~Pq~l~lP~~P~ 286 (358) T TIGR00978 260 FDIEEIREALKSFRGLPQKLGLPSAPE 286 (358) T ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 798999999984067764257798869 No 163 >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] Probab=94.40 E-value=0.21 Score=27.95 Aligned_cols=89 Identities=16% Similarity=0.161 Sum_probs=47.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC----CCC---------HHHHCCCCEEEECCCC--H-HHHHH Q ss_conf 079997588678999999986299728999965300786----006---------6774799899993898--3-78999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL----RYR---------EDLLNAADVSILCLPD--V-ASLEI 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~----~~~---------~~~~~~~Divf~a~p~--~-~s~~~ 65 (311) .||-|||| |-.|+-..+-|.++...+++..--.-...+ ++. ...+.++|++|+|++. . +.... T Consensus 179 ~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~~~~ 257 (414) T COG0373 179 KKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIITREM 257 (414) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCEEECHHHHHHHHHHCCEEEEECCCCCCCCCHHH T ss_conf 76999865-18999999999858987799975878999999998387022187788765207999990699855407888 Q ss_pred HHHHHHCCCCEEEECCCCCHHHHHHH Q ss_conf 99986125848982276303555431 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHRIAPGW 91 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R~~~~v 91 (311) .+...+.-....+||.+-.--.++++ T Consensus 258 ve~a~~~r~~~livDiavPRdie~~v 283 (414) T COG0373 258 VERALKIRKRLLIVDIAVPRDVEPEV 283 (414) T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCC T ss_conf 99887411675999826999987220 No 164 >PRK07660 consensus Probab=94.38 E-value=0.33 Score=26.71 Aligned_cols=87 Identities=15% Similarity=0.174 Sum_probs=57.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-CC----------------CC----------------CHHHH Q ss_conf 90799975886789999999862997289999653007-86----------------00----------------66774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-NL----------------RY----------------REDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-g~----------------~~----------------~~~~~ 47 (311) +.||+|||| |.-|..+-.++..+ ..++.++..+..+ .+ ++ +-+.+ T Consensus 3 Ik~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (283) T PRK07660 3 VQKIVVIGA-GQMGSGIAQVCAMA-GYDVKVQDLKQEQLDRGLAIITKNLARQVEKGRMKEEEKEATLNRLTVTLDLDCV 80 (283) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHH T ss_conf 788999896-98999999999966-9818999798899999999999999999870589989999998358776898997 Q ss_pred CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 79989999389837899--9999861-258489822763035554 Q gi|254780294|r 48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) .++|+|+=|.|....-+ ...++.+ ...++.+-+|+|.+.... T Consensus 81 ~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTS~l~i~~ 125 (283) T PRK07660 81 KEADLIIEAAVEKMDIKKKIFANLDEIAPEHAILATNTSSLPITE 125 (283) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH T ss_conf 689999987857544429999999964799718986588887325 No 165 >TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesizes 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms . In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis.; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process. Probab=94.36 E-value=0.059 Score=31.34 Aligned_cols=34 Identities=15% Similarity=0.323 Sum_probs=30.7 Q ss_pred CCE-EEEECCCCHHHHHHHHHHHCCC-CEEEEEEEC Q ss_conf 907-9997588678999999986299-728999965 Q gi|254780294|r 1 MYK-IFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPC 34 (311) Q Consensus 1 M~k-VaIvGATG~vG~~li~lL~~hp-~~~l~~l~s 34 (311) |++ +.|+|+||=.|..-++++..|| .|++..|+. T Consensus 2 ~K~~i~iLGSTGSIG~~TL~v~~~~~~~f~~~aL~~ 37 (406) T TIGR00243 2 LKQNIVILGSTGSIGKQTLDVVRHHPDKFQVVALSA 37 (406) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEC T ss_conf 755236743775013568999973887089986403 No 166 >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated Probab=94.35 E-value=0.37 Score=26.40 Aligned_cols=87 Identities=16% Similarity=0.189 Sum_probs=57.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---C-C----------------CC----------------CH Q ss_conf 90799975886789999999862997289999653007---8-6----------------00----------------66 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---N-L----------------RY----------------RE 44 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g-~----------------~~----------------~~ 44 (311) +.||||||| |.-|+.+-.+++.+ .++++++..+..+ + . ++ +- T Consensus 3 Ik~VaViGa-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~a~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ 80 (291) T PRK06035 3 IKVIGVVGS-GVMGQGIAQVFART-GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY 80 (291) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCH T ss_conf 588999887-68899999999958-9988999899899999999999718999999866899999999998366435888 Q ss_pred HHHCCCCEEEECCCCHHHHHH--HHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 774799899993898378999--999861-258489822763035554 Q gi|254780294|r 45 DLLNAADVSILCLPDVASLEI--IQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 45 ~~~~~~Divf~a~p~~~s~~~--~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) +.++++|+|+=|.|.....+- ..++.+ ...++.+-+|+|.+.... T Consensus 81 ~~~~~aDlViEav~E~l~iK~~lf~~l~~~~~~~~IlaSNTSsl~is~ 128 (291) T PRK06035 81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAE 128 (291) T ss_pred HHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH T ss_conf 897659999988838899999999999965899837986088778699 No 167 >TIGR00036 dapB dihydrodipicolinate reductase; InterPro: IPR011770 Dihydrodipicolinate reductase is an enzyme found in bacteria and higher plants which is involved in the biosynthesis of diaminopimelic acid, a component of bacterial cell walls, and the essential amino acid L-lysine. It catalyses the the reduced pyridine nucleotide-dependent reduction of the alpha,beta-unsaturated cyclic imine, dihydrodipicolinate, to generate tetrahydrodipicolinate as shown below :2,3-dihydrodipicolinate + NAD(P)H = 2,3,4,5-tetrahydrodipicolinate + NAD(P)(+) As this enzyme is not found in mammals it is a potential target for the development of novel antibacterial and herbicidal compounds. The structures of the Escherichia coli (P04036 from SWISSPROT) and Mycobacterium tuberculosis (P72024 from SWISSPROT) enzymes have been determined , . The enzyme is a homotetramer where each monomer is composed of two domains, an N-terminal NAD(P)H-binding domain which forms a Rossman fold, and a C-terminal substrate-binding domain that forms an open, mixed alpha-beta sandwich.Tetramerisation occurs exclusively through interactions between C-terminal domain residues. Both enzymes show relatively little preference for either NADH or NADPH as cofactor. Conformational changes upon substrate binding bring the cofactor and substrate into close proximity and allow catalysis to occur. ; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0005737 cytoplasm. Probab=94.26 E-value=0.4 Score=26.16 Aligned_cols=124 Identities=18% Similarity=0.254 Sum_probs=74.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEEC---CCCCCCCC-------------CHH-------H--HCCCCEE- Q ss_conf 907999758867899999998629-9728999965---30078600-------------667-------7--4799899- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPC---EERHNLRY-------------RED-------L--LNAADVS- 53 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s---~~~ag~~~-------------~~~-------~--~~~~Div- 53 (311) |+||||-||.|=-|+++|+.+.+. |.++|...-- .+..|+-+ .++ . -.++|+. T Consensus 1 ~ikvav~GA~GRMG~~~ik~~~~~ye~l~Lv~A~~~~~~~~~G~D~GEl~g~g~~gv~v~~~~~~~~~l~~~~~~~DVli 80 (281) T TIGR00036 1 LIKVAVAGAAGRMGRELIKAVLQAYEGLKLVAAFERHGSSLQGTDIGELAGIGKVGVPVTDDLEAVLVLAFTETKPDVLI 80 (281) T ss_pred CCCEEEECCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEE T ss_conf 98358847887346999999997489816788886168885665420242255478410005788999874023686478 Q ss_pred EECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHC Q ss_conf 99389837899999986125848982276303555431100210004776520496077258421133112478888850 Q gi|254780294|r 54 ILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAK 133 (311) Q Consensus 54 f~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~ 133 (311) =|..|.++- +-+..+.+.|.. .|+=-++ |.-+.. -++.. +..-.+-.+|--||- +....+..+-+.... T Consensus 81 DFT~p~g~~-~~~~~a~~~Gv~-~V~GTTG-f~e~~~-----~~~~~--~a~~~~~~~v~A~NF-a~GV~~~~K~~~~aA 149 (281) T TIGR00036 81 DFTTPEGVV-ENVKIALENGVR-LVVGTTG-FSEEDL-----QELRD--LAEKKGVAAVIAPNF-AIGVNLMFKLLEKAA 149 (281) T ss_pred ECCCCHHHH-HHHHHHHHCCCE-EEECCCC-CCHHHH-----HHHHH--HHHHCCCCEEEECCC-HHHHHHHHHHHHHHH T ss_conf 738605678-999999966885-5771668-998999-----99999--998649978984650-689999999999998 Q ss_pred CC Q ss_conf 34 Q gi|254780294|r 134 LL 135 (311) Q Consensus 134 ~i 135 (311) +. T Consensus 150 ~~ 151 (281) T TIGR00036 150 KY 151 (281) T ss_pred HH T ss_conf 76 No 168 >PRK06476 pyrroline-5-carboxylate reductase; Reviewed Probab=94.24 E-value=0.18 Score=28.36 Aligned_cols=81 Identities=14% Similarity=0.243 Sum_probs=49.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEECCCCC---------CCCC---CHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 0799975886789999999862997--289999653007---------8600---6677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD--LCLLSIPCEERH---------NLRY---REDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~--~~l~~l~s~~~a---------g~~~---~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .||+++|+ |--|+.+++=|.++.. -++.....+... +.++ ..+..+++|++|+|.......+... T Consensus 1 MkIgfIG~-GnMg~Aii~Gl~~~~~~~~~i~v~~r~~~~~~~l~~~~~~v~~~~~n~~~~~~~dvi~LaVKP~~~~~vl~ 79 (255) T PRK06476 1 MRIGFIGT-GAITEAMVTGLLSSPADVSEIIVSPRNAQIAARLAARFAKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLR 79 (255) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHHCCEEEEEECHHHHHHHHH T ss_conf 98999864-69999999999978899250889898989999999876955985788999851887888617888998877 Q ss_pred HHHHCCCCEEEECCCCC Q ss_conf 98612584898227630 Q gi|254780294|r 68 LIKKNGINSRIIDTSTA 84 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~ 84 (311) .+.-.. +..||+-.+- T Consensus 80 ~l~~~~-~~~vISi~AG 95 (255) T PRK06476 80 ALRFRP-GQTVISVIAA 95 (255) T ss_pred HHHCCC-CCEEEEECCC T ss_conf 620578-9789997378 No 169 >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated Probab=94.23 E-value=0.2 Score=28.03 Aligned_cols=35 Identities=14% Similarity=0.310 Sum_probs=28.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 079997588678999999986299728999965300 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) +.|||-||+|.-|++|++.|..+ ...+..++++++ T Consensus 181 KTV~VTGASG~LG~aL~k~l~~~-GAKVIalTs~~~ 215 (410) T PRK07424 181 KTVAVTGASGTLGQALLKELHQQ-GAKVIALTSNSD 215 (410) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCCC T ss_conf 67999547737789999999977-998999935898 No 170 >pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Probab=94.20 E-value=0.12 Score=29.53 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=38.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC------------------C-----CHHHHCCCCE Q ss_conf 079997588678999999986299728999965300------7860------------------0-----6677479989 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR------------------Y-----REDLLNAADV 52 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~------------------~-----~~~~~~~~Di 52 (311) .||+|+|. ||||.-+--.|+++ ..++..+.-++. .|+. + ..+...++|+ T Consensus 1 MkI~ViGl-GyVGl~~a~~la~~-G~~V~g~D~d~~~v~~ln~g~~p~~E~~l~~~l~~~~~~~~~~~~~~~~~i~~~d~ 78 (185) T pfam03721 1 MRIAVIGL-GYVGLPTAVCLAEI-GHDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKANVSGRLRFTTDVAEAIKEADV 78 (185) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCEEEECCHHHHHHHCCE T ss_conf 97999897-87489999999948-99399997998999998626897467588999987340896998787998844989 Q ss_pred EEECCCCHH Q ss_conf 999389837 Q gi|254780294|r 53 SILCLPDVA 61 (311) Q Consensus 53 vf~a~p~~~ 61 (311) +|.|.|... T Consensus 79 i~I~VpTP~ 87 (185) T pfam03721 79 IFIAVPTPS 87 (185) T ss_pred EEEECCCCC T ss_conf 999736876 No 171 >PRK06813 homoserine dehydrogenase; Validated Probab=94.20 E-value=0.25 Score=27.44 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=49.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC---------CCEEEEEEECCCC-----CCCCCC----------------H----HH- Q ss_conf 07999758867899999998629---------9728999965300-----786006----------------6----77- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR---------KDLCLLSIPCEER-----HNLRYR----------------E----DL- 46 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h---------p~~~l~~l~s~~~-----ag~~~~----------------~----~~- 46 (311) +||+|+|- |.||+.++++|.++ -.+++..+++++. .|..+. + .. T Consensus 3 i~I~l~G~-G~VG~~~~~~l~~~~~~l~~~~g~~l~i~~i~~s~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 81 (341) T PRK06813 3 IKVVLSGY-GTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSAAIEKYIEHHPEERA 81 (341) T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCHHHHH T ss_conf 02999953-88999999999999999999749977999999686011376688878987503530235555542346663 Q ss_pred --HCCCCEEEECCC-----CHHHHHHHHHHHHCCCCEEEECCC Q ss_conf --479989999389-----837899999986125848982276 Q gi|254780294|r 47 --LNAADVSILCLP-----DVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 47 --~~~~Divf~a~p-----~~~s~~~~~~~~~~g~~~~vid~s 82 (311) .-+.|+++=|++ .+.+.+|...+.++|.. |+... T Consensus 82 ~~~~~~~i~vd~t~~~~~~~~~a~~~i~~al~~g~~--VVTAN 122 (341) T PRK06813 82 TDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKQMD--IVAIS 122 (341) T ss_pred CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCC--EEECC T ss_conf 035567669991122135764589999999972996--89327 No 172 >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. Probab=94.11 E-value=0.43 Score=25.98 Aligned_cols=92 Identities=22% Similarity=0.307 Sum_probs=51.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCC---------CCC-------C-----HHHHCCCCEEEECCCC Q ss_conf 0799975886789999999862-9972899996530078---------600-------6-----6774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ-RKDLCLLSIPCEERHN---------LRY-------R-----EDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~-hp~~~l~~l~s~~~ag---------~~~-------~-----~~~~~~~Divf~a~p~ 59 (311) ++|-|-||+|..|.+|++.|.+ +....+..++..+..- .++ + +..+.++|+||-++-. T Consensus 5 K~ILVTGGaGfIGS~lv~~Ll~~~~~~~iii~~~de~~~~~l~~~~~~~~i~f~~gDIrD~~~l~~~~~~vD~VfHaAA~ 84 (324) T TIGR03589 5 KSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAAAL 84 (324) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCCEEEECCCC T ss_conf 99999079779999999999972998289996686403288985168987599967777889999763488899994627 Q ss_pred -HH-----------------HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC Q ss_conf -37-----------------899999986125848982276303555431100 Q gi|254780294|r 60 -VA-----------------SLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG 94 (311) Q Consensus 60 -~~-----------------s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~ 94 (311) .| +.+....+.+.|.. ++|=.|++--..|--||+ T Consensus 85 khVp~se~nP~e~i~tNV~Gt~nlleaa~~~~Vk-k~V~iSTDka~~P~n~yG 136 (324) T TIGR03589 85 KQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALSTDKAANPINLYG 136 (324) T ss_pred CCCCHHHHCHHHHHHHHHHHHHHHHHHHHHCCCC-EEEEECCCCCCCCCCCCC T ss_conf 7672677698999999979999999998855543-178622688889967431 No 173 >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.10 E-value=0.39 Score=26.25 Aligned_cols=86 Identities=16% Similarity=0.190 Sum_probs=55.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CCC-C-----------------------CHHHHCCCCEE Q ss_conf 90799975886789999999862997289999653007---860-0-----------------------66774799899 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NLR-Y-----------------------REDLLNAADVS 53 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~~-~-----------------------~~~~~~~~Div 53 (311) |.||||||| |.-|+.+-.++..+ .+++..+..+..+ +++ + +-+.+.++|+| T Consensus 5 Ik~VaViGA-G~MG~gIA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~l~a~~~aDlV 82 (310) T PRK06130 5 IQNLAIIGA-GAMGSGIAALFASK-GLDVVLIDPMPGALERAAQVIERQLGVYAPGAIAGTLQRIRMDAGLEAACGADLV 82 (310) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHEEECCCHHHHCCCCEE T ss_conf 888989787-79999999999858-9988999799999999999999986532766699987410213788896689999 Q ss_pred EECCCCHHHHH--HHHHHHHC-CCCEEEECCCCCHHHH Q ss_conf 99389837899--99998612-5848982276303555 Q gi|254780294|r 54 ILCLPDVASLE--IIQLIKKN-GINSRIIDTSTAHRIA 88 (311) Q Consensus 54 f~a~p~~~s~~--~~~~~~~~-g~~~~vid~ss~~R~~ 88 (311) +=|.|....-+ +...+-+. ..++.+-+|+|.+... T Consensus 83 iEav~E~l~iK~~lf~~le~~~~~~~IlASNTSsl~is 120 (310) T PRK06130 83 IEAVPEKLDLKRDIFARLDTLCDPQTIFATNTSGLSIN 120 (310) T ss_pred EECCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCH T ss_conf 98881778999999999860689883899648877606 No 174 >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=94.07 E-value=0.44 Score=25.93 Aligned_cols=86 Identities=13% Similarity=0.172 Sum_probs=57.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CCC----------------HHHH Q ss_conf 9079997588678999999986299728999965300786-----------------006----------------6774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RYR----------------EDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~~----------------~~~~ 47 (311) +.||||||| |.-|+.+-.++..+ .+++.++..+..+-. ++. -+.+ T Consensus 2 I~kV~ViGa-G~mG~~IA~~~a~~-G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~ 79 (284) T PRK07819 2 IQRVGVVGA-GQMGSGIAEVCARA-GVDVLVFETTEEAATAGRNRIEKSLERAVSAGKLTERERDAALARLTFTTDLEDL 79 (284) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCHHHH T ss_conf 167999897-78999999999957-9908999798899999999999999999872789879999999637066899997 Q ss_pred CCCCEEEECCCCHHHHH--HHHHHHHC-C-CCEEEECCCCCHHHH Q ss_conf 79989999389837899--99998612-5-848982276303555 Q gi|254780294|r 48 NAADVSILCLPDVASLE--IIQLIKKN-G-INSRIIDTSTAHRIA 88 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~--~~~~~~~~-g-~~~~vid~ss~~R~~ 88 (311) .++|+|+=|.|.....+ ...++-+. . .++.+-+|+|.+... T Consensus 80 ~~adlViEav~E~l~~K~~l~~~ld~~~~~p~~IlaSNTS~l~is 124 (284) T PRK07819 80 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM 124 (284) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH T ss_conf 659999990738788889999999974289985999658887613 No 175 >pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin. Probab=94.00 E-value=0.4 Score=26.17 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=50.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC----C-----------------------------CHHHHCC Q ss_conf 799975886789999999862997289999653007860----0-----------------------------6677479 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR----Y-----------------------------REDLLNA 49 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~----~-----------------------------~~~~~~~ 49 (311) ||||+|| |.-|+.+-.++..+ .++++.+..+..+-.+ + +-+.+.+ T Consensus 1 kV~ViGa-G~mG~~iA~~~a~~-G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 78 (180) T pfam02737 1 KVAVIGA-GTMGAGIAQVFARA-GLEVVLVDISEEALEKARARIEKSLARLVEKGRLTEEDVDAVLARISFTTDLADAVD 78 (180) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHCC T ss_conf 9899997-88999999999967-993999979989999999999998999997256756769999852410588999758 Q ss_pred CCEEEECCCCHHHHH--HHHHHHHC-CCCEEEECCCCCHHHH Q ss_conf 989999389837899--99998612-5848982276303555 Q gi|254780294|r 50 ADVSILCLPDVASLE--IIQLIKKN-GINSRIIDTSTAHRIA 88 (311) Q Consensus 50 ~Divf~a~p~~~s~~--~~~~~~~~-g~~~~vid~ss~~R~~ 88 (311) +|+|+=|.|.....+ +..++.+. ..++.+-+|+|.+... T Consensus 79 adlViEav~E~l~iK~~l~~~l~~~~~~~~IlaSnTS~l~is 120 (180) T pfam02737 79 ADLVIEAVPENLDLKRELFAELDAIAPPDAILASNTSSLSIT 120 (180) T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCHH T ss_conf 999999251768899999999997430330887526768999 No 176 >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=94.00 E-value=0.45 Score=25.84 Aligned_cols=85 Identities=14% Similarity=0.162 Sum_probs=56.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---------C-------CCCCHHHHCCCCEEEECCCC----H Q ss_conf 90799975886789999999862997289999653007---------8-------60066774799899993898----3 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---------N-------LRYREDLLNAADVSILCLPD----V 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---------g-------~~~~~~~~~~~Divf~a~p~----~ 60 (311) ++||.|+|. |-.|.-+.++|.++ ..++.....+... | ....+..+.++|+++.+-+= . T Consensus 7 ~k~vlV~Gl-G~sG~a~a~~L~~~-G~~V~~~D~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p 84 (501) T PRK02006 7 RPMVLVLGL-GESGLAMARWCARH-GCRLRVADTREAPPNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEP 84 (501) T ss_pred CCEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCC T ss_conf 983999833-68899999999978-9849999899998619999860898189778898678468999998990088885 Q ss_pred HHHHHHHHHHHCCCCEEEE-CCCCCHHHHH Q ss_conf 7899999986125848982-2763035554 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRII-DTSTAHRIAP 89 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~ 89 (311) ...++..++.++|+. |+ |.--.+|.-+ T Consensus 85 ~~~~~l~~A~~~gi~--i~~eiel~~~~~~ 112 (501) T PRK02006 85 ALAALLAAARERGIP--VWGELELFAQALA 112 (501) T ss_pred CHHHHHHHHHHCCCC--EEEHHHHHHHHHH T ss_conf 431999999987995--8768999998876 No 177 >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional Probab=93.99 E-value=0.084 Score=30.37 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=40.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCC-CC-------------------HHHHCCCCEEE Q ss_conf 9079997588678999999986299728999965300------7860-06-------------------67747998999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLR-YR-------------------EDLLNAADVSI 54 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~-~~-------------------~~~~~~~Divf 54 (311) |.||+|+|. ||||.-+--.|++. .+++..+.-.+. .|+. +. .....++|++| T Consensus 3 ~kkI~ViGl-GYVGL~~a~~lA~~-G~~Vig~D~d~~kv~~l~~g~~p~~Ep~l~~ll~~~~~~~~l~~t~~~~~ad~ii 80 (415) T PRK11064 3 FETISVIGL-GYIGLPTAAAFASR-QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKAAVEGGYLRATTTPVPADAFL 80 (415) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEECCHHHCCEEE T ss_conf 887999886-87789999999968-8948999899999999978689988989899999998659836525746789999 Q ss_pred ECCCCH Q ss_conf 938983 Q gi|254780294|r 55 LCLPDV 60 (311) Q Consensus 55 ~a~p~~ 60 (311) .|.|.. T Consensus 81 I~V~TP 86 (415) T PRK11064 81 IAVPTP 86 (415) T ss_pred EECCCC T ss_conf 988999 No 178 >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] Probab=93.91 E-value=0.44 Score=25.96 Aligned_cols=80 Identities=23% Similarity=0.279 Sum_probs=55.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCCCC---HHHHCCCCEEEECCCCHHHHHHHHH-- Q ss_conf 0799975886789999999862997289999653007--------86006---6774799899993898378999999-- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLRYR---EDLLNAADVSILCLPDVASLEIIQL-- 68 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~~~---~~~~~~~Divf~a~p~~~s~~~~~~-- 68 (311) .|||.||- |.-|.-|-+-|.+. -++++...-+..+ |-+.. .+...++|++|.|+|++..-+-+-. T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~a-G~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~ 78 (286) T COG2084 1 MKIAFIGL-GIMGSPMAANLLKA-GHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGE 78 (286) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCEECCCHHHHHHHCCEEEEECCCHHHHHHHHHCC T ss_conf 90799857-35259999999977-98789980885665689997298003889999961998999617989999998185 Q ss_pred --HHH---CCCCEEEECCCCCH Q ss_conf --861---25848982276303 Q gi|254780294|r 69 --IKK---NGINSRIIDTSTAH 85 (311) Q Consensus 69 --~~~---~g~~~~vid~ss~~ 85 (311) +.+ .| ..+||.|+-- T Consensus 79 ~g~~~~~~~G--~i~IDmSTis 98 (286) T COG2084 79 NGLLEGLKPG--AIVIDMSTIS 98 (286) T ss_pred CCHHHCCCCC--CEEEECCCCC T ss_conf 3353337899--7899878999 No 179 >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] Probab=93.86 E-value=0.45 Score=25.88 Aligned_cols=145 Identities=19% Similarity=0.173 Sum_probs=79.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC--------------------CCCCCCCHHHHCCCCEEEECCCCHH Q ss_conf 07999758867899999998629972899996530--------------------0786006677479989999389837 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE--------------------RHNLRYREDLLNAADVSILCLPDVA 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~--------------------~ag~~~~~~~~~~~Divf~a~p~~~ 61 (311) .++.|+|+ |-+|..+-+.|.+..+ ++..+...+ .-...+.+....++|+++.+++++. T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225) T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCH T ss_conf 98999898-5788999999987899-089997688999986320004499992688989998679863899999808867 Q ss_pred HHHHHHHHH-H-CCCCEEEECCCCCHHHHHHHHHC-CCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 899999986-1-25848982276303555431100-21000477652049607725842113311247888885034556 Q gi|254780294|r 62 SLEIIQLIK-K-NGINSRIIDTSTAHRIAPGWVYG-FPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDR 138 (311) Q Consensus 62 s~~~~~~~~-~-~g~~~~vid~ss~~R~~~~vpl~-vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~ 138 (311) ..-.+-.+. + .|...++.-..+...++.-..++ .--++|+..-..+-.+.+..|+-.... ++.. . +. T Consensus 79 ~N~i~~~la~~~~gv~~viar~~~~~~~~~~~~~g~~~ii~Pe~~~~~~l~~~i~~p~~~~~~------~~~~--~--~~ 148 (225) T COG0569 79 VNSVLALLALKEFGVPRVIARARNPEHEKVLEKLGADVIISPEKLAAKRLARLIVTPGALDVL------ELAG--G--DA 148 (225) T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCEEECHHHHHHHHHHHHHCCCCHHEEE------ECCC--C--CC T ss_conf 999999999987399849999569416778986799489755899999999985388631034------4269--9--72 Q ss_pred CCEEEEEECCCCCCCCCCCH Q ss_conf 50267651233335610000 Q gi|254780294|r 139 YPITINAVSGYTGGGKKLIS 158 (311) Q Consensus 139 ~~~~~~~~sg~sgaG~~~~~ 158 (311) ..+......+....|+...+ T Consensus 149 ~~~~~~v~~~~~~~g~~L~e 168 (225) T COG0569 149 EVIEEKVAEDSPLAGKTLRE 168 (225) T ss_pred EEEEEEECCCCCCCCCCHHH T ss_conf 38999935898257759899 No 180 >PRK06718 precorrin-2 dehydrogenase; Reviewed Probab=93.77 E-value=0.5 Score=25.58 Aligned_cols=70 Identities=13% Similarity=0.069 Sum_probs=47.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CC------CCCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 079997588678999999986299728999965300--------78------6006677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HN------LRYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag------~~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .+|-|||+ |.|+.+=++.|.+.. ..++.++-+-+ .| +.|...++.++++||.|+++....+.+. T Consensus 11 k~vLVVGG-G~vA~rK~~~Ll~~g-A~VtVvsp~~~~el~~l~~~~~i~~~~~~~~~~dl~~~~lViaAT~d~~~N~~i~ 88 (202) T PRK06718 11 KRVVIVGG-GKVAGRRAITLLKYG-AHITVISPEITENLVKLVEEGKIRWKEKEFEPSDIVDAFLVIAATNDPRVNEAVA 88 (202) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHHHCCCCEEEECCCCHHHHHHHH T ss_conf 86999889-899999999998689-9699986999989999997699447616788667516704455279899999999 Q ss_pred HHHHCC Q ss_conf 986125 Q gi|254780294|r 68 LIKKNG 73 (311) Q Consensus 68 ~~~~~g 73 (311) .....| T Consensus 89 ~~~~~~ 94 (202) T PRK06718 89 EALPEN 94 (202) T ss_pred HHHHHC T ss_conf 986544 No 181 >PRK07680 late competence protein ComER; Validated Probab=93.73 E-value=0.22 Score=27.85 Aligned_cols=84 Identities=10% Similarity=0.267 Sum_probs=49.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC---EEEEEEECCCCC---------CCCC---CHHHHCCCCEEEECCCCHHHHHHH Q ss_conf 0799975886789999999862997---289999653007---------8600---667747998999938983789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD---LCLLSIPCEERH---------NLRY---REDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~---~~l~~l~s~~~a---------g~~~---~~~~~~~~Divf~a~p~~~s~~~~ 66 (311) .||+++|+ |--|+.+++=|.+... .++.....+... |..+ ..+...++|++|+|.-...-.+.. T Consensus 1 MkI~fIG~-GnMg~Aii~gl~~~~~~~~~~i~i~~r~~~~~~~l~~~~~~i~~~~~~~~~~~~~dvIiLaVKPq~~~~vl 79 (273) T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESRAVKPSCLTITNRTPAKAYHIKEKYPSIHVAKTIEEVIEQSELIFICVKPLDIYPLL 79 (273) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCEEEECCHHHHHHCCCEEEEECCHHHHHHHH T ss_conf 98999876-99999999999977998945699988998999999987699088688899984099899964888899999 Q ss_pred HHHHHC-CCCEEEECCCCCHH Q ss_conf 998612-58489822763035 Q gi|254780294|r 67 QLIKKN-GINSRIIDTSTAHR 86 (311) Q Consensus 67 ~~~~~~-g~~~~vid~ss~~R 86 (311) ..+... ..+..||+-.+-.. T Consensus 80 ~~i~~~~~~~~~iISi~AGis 100 (273) T PRK07680 80 KKLAPHFSDEKCLVSITSPIS 100 (273) T ss_pred HHHHHHCCCCCEEEEECCCCC T ss_conf 998863478848999558888 No 182 >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated Probab=93.71 E-value=0.39 Score=26.27 Aligned_cols=89 Identities=18% Similarity=0.213 Sum_probs=58.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC-------------------CHHHHCCCCEEE-------- Q ss_conf 07999758867899999998629972899996530078600-------------------667747998999-------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY-------------------REDLLNAADVSI-------- 54 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~-------------------~~~~~~~~Divf-------- 54 (311) .||-|+|+.|+.|-.|.+.|.++...|+..+.-.+++-.++ -+...++||+++ T Consensus 316 ~~vlilgvngfig~hl~~~~l~~~~~~v~g~d~~~~~i~~~~~~p~~~f~~gdi~~~~~wie~~ikkcdvvlplvaiatp 395 (660) T PRK08125 316 TRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAIATP 395 (660) T ss_pred EEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEHHHCCH T ss_conf 27999834413678999998503885899886575345575349954888156146689999887545767320553474 Q ss_pred ----------ECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf ----------938983789999998612584898227630355543 Q gi|254780294|r 55 ----------LCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG 90 (311) Q Consensus 55 ----------~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~ 90 (311) |-++=+.--+.+..+.+.+.....=+.|--|-|-+| T Consensus 396 ~~y~~~pl~vfeldfe~nl~ivr~c~ky~kriifpstsevygm~~d 441 (660) T PRK08125 396 IEYTRNPLRVFELDFEENLKIIRYCVKYRKRIIFPSTSEVYGMCTD 441 (660) T ss_pred HHHHCCCCEEEEECHHHCCHHHHHHHHHCCEEEECCHHHHCCCCCC T ss_conf 7763486047873267552899999974877896560551014788 No 183 >PRK06444 prephenate dehydrogenase; Provisional Probab=93.62 E-value=0.27 Score=27.20 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=48.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) .++.|+|+-|=-|+.|.++|.+- .++++ ..+.|++|.|+|=..+.++.. ..| ..+||. T Consensus 1 ~~~~iig~~gr~g~~~~~~~~~~-g~~v~----------------i~k~D~ifiaVPI~~~~~iI~---~~~--~tiiDv 58 (197) T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN-GLGVY----------------IKKADHAFLSVPIDAALNYIE---SYD--NNFVEI 58 (197) T ss_pred CCEEEECCCCCHHHHHHHHHCCC-CCEEE----------------ECCCCEEEEEEEHHHHHHHHH---HCC--CEEEEE T ss_conf 91699637871668999997037-84789----------------727888999824588899998---479--738998 Q ss_pred CCC Q ss_conf 630 Q gi|254780294|r 82 STA 84 (311) Q Consensus 82 ss~ 84 (311) +|- T Consensus 59 ~SV 61 (197) T PRK06444 59 SSV 61 (197) T ss_pred EEC T ss_conf 863 No 184 >pfam02826 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain. This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Probab=93.62 E-value=0.22 Score=27.81 Aligned_cols=59 Identities=24% Similarity=0.314 Sum_probs=39.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----CCCCC--HHHHCCCCEEEECCCCHHH Q ss_conf 0799975886789999999862997289999653007-----86006--6774799899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----NLRYR--EDLLNAADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----g~~~~--~~~~~~~Divf~a~p~~~s 62 (311) .+|+|+|. |-+|+++.+++..- ..++..+...... +.+.. ++.++++|++++++|-... T Consensus 37 k~vgIiG~-G~IG~~va~~l~~f-g~~V~~~d~~~~~~~~~~~~~~~~l~~ll~~sDii~~~~plt~~ 102 (176) T pfam02826 37 KTVGIIGL-GRIGRAVARRLKAF-GMKVIAYDRYPKAEAEALGARYVSLDELLAESDVVSLHLPLTPE 102 (176) T ss_pred CEEEEECC-CHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHCCEEECCHHHHHHHCCEEEECCCCCCC T ss_conf 99999896-99999999999983-98125437987610231571666899998629988754767420 No 185 >pfam02882 THF_DHG_CYH_C Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain. Probab=93.54 E-value=0.29 Score=27.02 Aligned_cols=103 Identities=12% Similarity=0.143 Sum_probs=63.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) +++.|+|.+..||+-|-.+|.++ ...++...|... --.+...+.|+++.|.+..-- +-+...+.| ..|||- T Consensus 37 k~vvViGrS~iVG~Pla~lL~~~-~atVtichs~T~----nl~~~~~~ADIvI~A~G~p~~--i~~~~ik~g--avvIDv 107 (159) T pfam02882 37 KNVVVIGRSNIVGKPLALLLLNA-NATVTVCHSKTK----DLAEITREADIVVVAVGKPGL--IKADWVKPG--AVVIDV 107 (159) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEECCCCC----CHHHHHHCCCEEEEECCCCCC--CCHHHCCCC--CEEEEE T ss_conf 66999888731489999999877-998999818999----978963003444231588550--569885899--889980 Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 630355543110021000477652049607725842 Q gi|254780294|r 82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) .-.+--+.. .+-.++.+..+.. .+.+--.||- T Consensus 108 Gi~~~~~gk---l~GDvd~~~v~~~-a~~iTPVPGG 139 (159) T pfam02882 108 GINRVENGK---LVGDVDFENVKEK-ASAITPVPGG 139 (159) T ss_pred CCCCCCCCC---EECCCCHHHHHHH-CEEECCCCCC T ss_conf 220658996---7578777899964-7286899995 No 186 >KOG1494 consensus Probab=93.54 E-value=0.16 Score=28.66 Aligned_cols=36 Identities=14% Similarity=0.059 Sum_probs=26.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEECCC Q ss_conf 907999758867899999998629972-899996530 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPCEE 36 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s~~ 36 (311) ++||||+||.|=.||-|=-||-..|.+ +|.+..-.. T Consensus 28 ~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~ 64 (345) T KOG1494 28 GLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIAN 64 (345) T ss_pred CCEEEEEECCCCCCCCHHHHHHCCCCCCEEEEEECCC T ss_conf 6249997348766756899974285523013332036 No 187 >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] Probab=93.54 E-value=0.16 Score=28.68 Aligned_cols=60 Identities=17% Similarity=0.194 Sum_probs=34.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-CCCCCC---------HHHHC-CCCEEEECCCCHHHHH Q ss_conf 9997588678999999986299728999965300-786006---------67747-9989999389837899 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-HNLRYR---------EDLLN-AADVSILCLPDVASLE 64 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-ag~~~~---------~~~~~-~~Divf~a~p~~~s~~ 64 (311) |+|-|+||++|+.|...|.+. .-+++.++-+.. +...+. ++... ++|+|+-=++..+..+ T Consensus 1 IliTGgTGlIG~~L~~~L~~~-gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLAG~~I~~r 71 (297) T COG1090 1 ILITGGTGLIGRALTARLRKG-GHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLAGEPIAER 71 (297) T ss_pred CEEECCCCCHHHHHHHHHHHC-CCEEEEEECCCCCHHHHCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCC T ss_conf 957356650168999999848-98699997478502332476533430124403678778998889815446 No 188 >PRK09897 hypothetical protein; Provisional Probab=93.49 E-value=0.13 Score=29.17 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=33.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC--CCCCCC Q ss_conf 907999758867899999998629-9728999965300--786006 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER--HNLRYR 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~--ag~~~~ 43 (311) |.||||||+ |=+|--.++-|.++ ..++|+.+-...+ +|+.|+ T Consensus 1 mkrIAivG~-GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs 45 (535) T PRK09897 1 MKKIAIVGA-GPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYS 45 (535) T ss_pred CCEEEEECC-CCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCC T ss_conf 950799667-862499999986469982699982156677899868 No 189 >PRK06522 2-dehydropantoate 2-reductase; Reviewed Probab=93.44 E-value=0.36 Score=26.49 Aligned_cols=68 Identities=21% Similarity=0.193 Sum_probs=47.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CCCCCC---------------HHHHCCCCEEEECCCC Q ss_conf 079997588678999999986299728999965300-------786006---------------6774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-------HNLRYR---------------EDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-------ag~~~~---------------~~~~~~~Divf~a~p~ 59 (311) .||+|+|| |.+|.-+=-.|.+.. .++++++..+. .|.++. ......+|++|.|+.. T Consensus 1 MkI~IiGa-GaiG~~~a~~L~~ag-~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~vKs 78 (307) T PRK06522 1 MKIAILGA-GAIGGLFGARLAQAG-HDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAVKA 78 (307) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEECCC T ss_conf 98999991-499999999998489-9889997888899999968939952897698055034886674898889998066 Q ss_pred HHHHHHHHHHHH Q ss_conf 378999999861 Q gi|254780294|r 60 VASLEIIQLIKK 71 (311) Q Consensus 60 ~~s~~~~~~~~~ 71 (311) ....+..+.+.. T Consensus 79 ~~~~~a~~~l~~ 90 (307) T PRK06522 79 YQLPAALPDLAP 90 (307) T ss_pred CCHHHHHHHHHH T ss_conf 689999999986 No 190 >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed Probab=93.40 E-value=0.41 Score=26.15 Aligned_cols=69 Identities=25% Similarity=0.220 Sum_probs=48.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-------------------CCCHHHHCCCCEEEECCCCHHH Q ss_conf 079997588678999999986299728999965300786-------------------0066774799899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-------------------RYREDLLNAADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-------------------~~~~~~~~~~Divf~a~p~~~s 62 (311) .||-|+|| |-||..|-+.|.+. .-++..+..++..-+ .+.+...+++|+++.+++++.. T Consensus 1 M~IiI~Ga-G~vG~~La~~Ls~e-~~dV~vID~d~~~~~~~~~~lDv~~i~Gd~~~~~~L~~Agi~~ad~~IAvT~~De~ 78 (455) T PRK09496 1 MKIIILGA-GQVGGTLAERLVGE-NNDVTVIDTDEERLRRLQDRLDVRTVVGNGSHPDVLREAGAEDADMLIAVTDSDET 78 (455) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHHCCEEEEEECCCCHHHHHHCCCCCCCEEEEECCCHHH T ss_conf 97999998-88999999999868-99799998999999998862586899966899999996599869999995797189 Q ss_pred HHHHHHHHHC Q ss_conf 9999998612 Q gi|254780294|r 63 LEIIQLIKKN 72 (311) Q Consensus 63 ~~~~~~~~~~ 72 (311) .-.+-.+++. T Consensus 79 Nli~~~lAk~ 88 (455) T PRK09496 79 NMVACQIAKS 88 (455) T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 191 >PRK05562 precorrin-2 dehydrogenase; Provisional Probab=93.31 E-value=0.6 Score=25.10 Aligned_cols=78 Identities=10% Similarity=0.076 Sum_probs=52.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------------CCCCCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 079997588678999999986299728999965300--------------786006677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------------HNLRYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------------ag~~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) +||-|||+ |-|+.+=++.|.+. ...++.++-+=+ .-+.|.+.++.+.++||.|+.+..-.+.+. T Consensus 25 lkvLVVGG-G~VA~RKi~~Ll~a-gA~VtVVSP~~~~el~~L~~~~~I~~i~r~y~~~dL~~~~LVIaATdd~~lN~~I~ 102 (222) T PRK05562 25 IKVLVIGG-GKAAFIKGKTFLKK-GCYVEILSKEFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIIIATDDEELNNKIR 102 (222) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHCCCCCEEEEECCCHHHHHHHH T ss_conf 66999998-79999999999878-99899987866889999997598699968679778088739999479889999999 Q ss_pred -HHHHCCCCEEEECC Q ss_conf -98612584898227 Q gi|254780294|r 68 -LIKKNGINSRIIDT 81 (311) Q Consensus 68 -~~~~~g~~~~vid~ 81 (311) .+.+.|.-+-+.|. T Consensus 103 ~~a~~~~ilvNvvdd 117 (222) T PRK05562 103 KHCDRLYKLYIDCSD 117 (222) T ss_pred HHHHHHCCEEEECCC T ss_conf 999980998898578 No 192 >PRK06249 2-dehydropantoate 2-reductase; Provisional Probab=93.30 E-value=0.6 Score=25.09 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=40.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-----CCCCCCC----------------HHHHCCCCEEEECCCCH Q ss_conf 07999758867899999998629972899996530-----0786006----------------67747998999938983 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-----RHNLRYR----------------EDLLNAADVSILCLPDV 60 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-----~ag~~~~----------------~~~~~~~Divf~a~p~~ 60 (311) .||+|+|| |.+|.-+=-.|.+. -.++++++.++ +.|.+++ .+....+|++|+|+=.- T Consensus 6 ~kI~IiGa-GAiG~~~a~~L~~a-G~~V~li~r~~~~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~~~~D~viv~vKs~ 83 (313) T PRK06249 6 PRIAIIGT-GAIGGFYGAMLARA-GFDVHFLLRSDYEAVRENGLQVDSVHGDFHLPQVQAYRSAEDMPPCDWVLVGLKTT 83 (313) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHCCEEEEECCCCEEECCCEEECCHHHCCCCCEEEEECCCC T ss_conf 88999991-49999999999966-99569996755999986885999669828976840236977839965899953667 Q ss_pred HHHHHHH Q ss_conf 7899999 Q gi|254780294|r 61 ASLEIIQ 67 (311) Q Consensus 61 ~s~~~~~ 67 (311) .....++ T Consensus 84 ~~~~~~~ 90 (313) T PRK06249 84 ANALLAP 90 (313) T ss_pred CHHHHHH T ss_conf 7899999 No 193 >PRK06392 homoserine dehydrogenase; Provisional Probab=93.15 E-value=0.63 Score=24.96 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=50.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-------CEEEEEEECCCC-----CCCC------------C----------CHHHH Q ss_conf 079997588678999999986299-------728999965300-----7860------------0----------66774 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-------DLCLLSIPCEER-----HNLR------------Y----------REDLL 47 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-------~~~l~~l~s~~~-----ag~~------------~----------~~~~~ 47 (311) +||||+|- |.||+.++++|.++. .+++..++.++. .|.. + .+..- T Consensus 1 i~I~l~G~-G~VG~~v~~~l~~~~~~~~~~~~i~vv~v~~s~~~~~~~~gid~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (326) T PRK06392 1 IRISIIGL-GNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326) T ss_pred CEEEEECC-CHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCHHCCCCCCCCHHHHHCCCCCCCCCCCCHHCCCHHHHHC T ss_conf 97999957-88999999999974999984899379999961010146568898885212232344444200044456645 Q ss_pred CCCCEEEECCCCH----HHHHHHHHHHHCCCCEEEECCCC Q ss_conf 7998999938983----78999999861258489822763 Q gi|254780294|r 48 NAADVSILCLPDV----ASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 48 ~~~Divf~a~p~~----~s~~~~~~~~~~g~~~~vid~ss 83 (311) .+.|+++=|.|.. .+..+...+.++|.. ||.... T Consensus 80 ~~~dvive~~~~~~~g~~~~~~~~~aL~~Gkh--VVTANK 117 (326) T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGID--VVTANK 117 (326) T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHCCCE--EECCCC T ss_conf 68987999302775442269999999987996--997796 No 194 >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC; InterPro: IPR014308 Members of this protein are the accessory protein XdhC, found in baceria, that is responsible for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.. Probab=93.13 E-value=0.16 Score=28.66 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=31.8 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 79997588678999999986299728999965300 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) .|.|-|| |=||++|+++|+..|.++|+++.+++. T Consensus 117 ~v~lFGA-GHVG~ALv~~La~lP~~~~~WvD~Re~ 150 (270) T TIGR02964 117 HVVLFGA-GHVGRALVRALAPLPECRVTWVDSREE 150 (270) T ss_pred EEEEECC-CHHHHHHHHHHCCCCCEEEEEEECCHH T ss_conf 1799867-718889999861699579998637155 No 195 >KOG2741 consensus Probab=93.03 E-value=0.66 Score=24.85 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=56.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC--CEEEEEEECCCC-CCC------------CC--CHHHHC--CCCEEEECCCCHHH Q ss_conf 079997588678999999986299--728999965300-786------------00--667747--99899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK--DLCLLSIPCEER-HNL------------RY--REDLLN--AADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp--~~~l~~l~s~~~-ag~------------~~--~~~~~~--~~Divf~a~p~~~s 62 (311) +|+||+|+ |..++.+++-|..-| ...+..+++.+. .-+ -+ .|+..+ +||++..+.|+..- T Consensus 7 ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH 85 (351) T KOG2741 7 IRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQH 85 (351) T ss_pred EEEEEEEH-HHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCCEEEECCCCCCH T ss_conf 58988604-67789999972147545827999965527889999986599987425579988249876879967998008 Q ss_pred HHHHHHHHHCCCC Q ss_conf 9999998612584 Q gi|254780294|r 63 LEIIQLIKKNGIN 75 (311) Q Consensus 63 ~~~~~~~~~~g~~ 75 (311) .+++-.+.+.|.. T Consensus 86 ~evv~l~l~~~K~ 98 (351) T KOG2741 86 YEVVMLALNKGKH 98 (351) T ss_pred HHHHHHHHHCCCC T ss_conf 9999999975995 No 196 >KOG1198 consensus Probab=93.02 E-value=0.52 Score=25.46 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=48.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC--------C--CCCH-----HH----HCCCCEEEECCCCHHHH Q ss_conf 7999758867899999998629972899996530078--------6--0066-----77----47998999938983789 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN--------L--RYRE-----DL----LNAADVSILCLPDVASL 63 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag--------~--~~~~-----~~----~~~~Divf~a~p~~~s~ 63 (311) +|-|.||+|-||+..++|...+....+...+|+++.- . .|++ .. ..++|++|=|.++.... T Consensus 160 ~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg~~~~~ 239 (347) T KOG1198 160 SVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVGGSTLT 239 (347) T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCH T ss_conf 69999387489999999998749747999815541689997299651248857799998762278850999888897324 Q ss_pred HHHHHHHHCCC Q ss_conf 99999861258 Q gi|254780294|r 64 EIIQLIKKNGI 74 (311) Q Consensus 64 ~~~~~~~~~g~ 74 (311) .-...+...|. T Consensus 240 ~~~~~l~~~g~ 250 (347) T KOG1198 240 KSLSCLLKGGG 250 (347) T ss_pred HHHHHHCCCCC T ss_conf 32343323787 No 197 >PRK06719 precorrin-2 dehydrogenase; Validated Probab=93.00 E-value=0.67 Score=24.81 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=52.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-----------CCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 0799975886789999999862997289999653-----------00786006677479989999389837899999986 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-----------ERHNLRYREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-----------~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .+|-|||+ |-|+.+=++.|.+.. ..++.++-+ +-..+.+.+.++.++|+||.|+.+..-...+.... T Consensus 14 k~vLVvGG-G~VA~rK~~~Ll~~g-a~VtVvsp~~~~el~~l~~i~~~~r~~~~~dl~~~~lViaATdd~~lN~~i~~~a 91 (157) T PRK06719 14 KVVVIIGG-GKIAYRKASGLKDTG-AFVTVVSPEICEEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMMVKQAA 91 (157) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHCCCEEEECCCCCHHHHCCCEEEEECCCCHHHHHHHHHHH T ss_conf 87999889-899999999998787-9699999986899984557088704678468378439998689989999999999 Q ss_pred HCCCCEEEECC Q ss_conf 12584898227 Q gi|254780294|r 71 KNGINSRIIDT 81 (311) Q Consensus 71 ~~g~~~~vid~ 81 (311) +...-+-+.|+ T Consensus 92 ~~~~lvN~~d~ 102 (157) T PRK06719 92 HDFQWVNVVSD 102 (157) T ss_pred HHCCCEEEECC T ss_conf 77895898289 No 198 >KOG2711 consensus Probab=92.96 E-value=0.54 Score=25.39 Aligned_cols=90 Identities=16% Similarity=0.098 Sum_probs=59.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHC----CCCEE--EE-EEECCCCCC--CCCC----------------------------H Q ss_conf 0799975886789999999862----99728--99-996530078--6006----------------------------6 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ----RKDLC--LL-SIPCEERHN--LRYR----------------------------E 44 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~----hp~~~--l~-~l~s~~~ag--~~~~----------------------------~ 44 (311) +||+|||+ |.=|..+.+++.+ ||.|+ ++ +...++--| +++. . T Consensus 22 ~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ 100 (372) T KOG2711 22 LKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLV 100 (372) T ss_pred EEEEEECC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEECCHHH T ss_conf 37999816-80899999998652540556673036777501337705789987515563423367865997767652399 Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHHHCC-CCEEEECCCCCHHHHHHHH Q ss_conf 77479989999389837899999986125-8489822763035554311 Q gi|254780294|r 45 DLLNAADVSILCLPDVASLEIIQLIKKNG-INSRIIDTSTAHRIAPGWV 92 (311) Q Consensus 45 ~~~~~~Divf~a~p~~~s~~~~~~~~~~g-~~~~vid~ss~~R~~~~vp 92 (311) +..++.|+++|++||.....+...+...= ..+..|+++.-+....+-| T Consensus 101 ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~ 149 (372) T KOG2711 101 EAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGP 149 (372) T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHHCCCCCCCEEEEEECCEECCCCCC T ss_conf 8843388899948715479999998542579980788540414168888 No 199 >PRK12416 protoporphyrinogen oxidase; Provisional Probab=92.90 E-value=0.35 Score=26.54 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=47.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-----CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH---HHHHHHHHHHC Q ss_conf 907999758867899999998629-----9728999965300786006677479989999389837---89999998612 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-----KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA---SLEIIQLIKKN 72 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-----p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~---s~~~~~~~~~~ 72 (311) |++|+|||+ |..|...---|.+. +.++++.+-++...|-.+..... -+++|=.-|... .......+.+. T Consensus 1 Mk~vaVIGg-GISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T~~~--~g~~~E~GP~s~~~~~~~~~~L~~eL 77 (466) T PRK12416 1 MKTVVVIGG-GITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEE--KDFIMESGADSIVARNEHVMPLVKDL 77 (466) T ss_pred CCEEEEECC-CHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEEEE--CCEEEECCCCCCCCCCHHHHHHHHHC T ss_conf 975999899-789999999998725555899867999779988677989973--99997559860034887899999986 Q ss_pred CCCEEEEC Q ss_conf 58489822 Q gi|254780294|r 73 GINSRIID 80 (311) Q Consensus 73 g~~~~vid 80 (311) |..-.+|. T Consensus 78 GL~d~li~ 85 (466) T PRK12416 78 NLEEEMVY 85 (466) T ss_pred CCCCCCCC T ss_conf 99311446 No 200 >pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Probab=92.63 E-value=0.55 Score=25.33 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=44.3 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 79997588678999999986299728999965300786006677479989999389837899999986125848982276 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) ||.|+|+ |++|-|+-..|.+. ..+++.+...++ .+-..+.+.+..+...+.+.|. .+.-++ T Consensus 1 rv~iiGg-G~ig~E~A~~l~~~-G~~Vtiie~~~~---------------~l~~~d~~~~~~~~~~l~~~GV--~i~~~~ 61 (82) T pfam00070 1 RVVVVGG-GYIGLEFASALAKL-GSKVTVVERRDR---------------LLRGFDEEIAKILQEKLEKNGI--EVLLNT 61 (82) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCC---------------CCHHCCHHHHHHHHHHHHHCCC--EEECCC T ss_conf 9999998-89999999999863-927899812573---------------3022798899999999986699--997499 Q ss_pred CC Q ss_conf 30 Q gi|254780294|r 83 TA 84 (311) Q Consensus 83 s~ 84 (311) .. T Consensus 62 ~v 63 (82) T pfam00070 62 TV 63 (82) T ss_pred EE T ss_conf 99 No 201 >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional Probab=92.37 E-value=0.81 Score=24.29 Aligned_cols=33 Identities=18% Similarity=0.337 Sum_probs=25.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 799975886789999999862997289999653 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) ||-|.|++|++|..|++.|.++....+..+... T Consensus 2 kILVTGg~GFIGs~l~~~Ll~~~~~~v~~vd~~ 34 (352) T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKL 34 (352) T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 799975100899999999997799889998479 No 202 >PRK06487 glycerate dehydrogenase; Provisional Probab=92.27 E-value=0.47 Score=25.76 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=13.4 Q ss_pred HHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 77479989999389837899999986 Q gi|254780294|r 45 DLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 45 ~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) +..+++|+++.. ...++++...++. T Consensus 41 ~~~~dadi~i~~-~~~i~~~~l~~ap 65 (317) T PRK06487 41 ERLQGAQVAISN-KVALDAAALAAAP 65 (317) T ss_pred HHHCCCCEEEEC-CCCCCHHHHHCCC T ss_conf 984899199968-9712899993499 No 203 >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=92.20 E-value=0.61 Score=25.05 Aligned_cols=85 Identities=11% Similarity=0.121 Sum_probs=56.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHHH Q ss_conf 0799975886789999999862997289999653007-------860-----0667747998999938983789999998 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLR-----YREDLLNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311) .||+|+|+ |..|+...++|.++ ..++.....+... |.. -..+.+.++|+++.+-+=.........+ T Consensus 13 k~V~V~Gl-G~sG~a~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~~a 90 (487) T PRK03369 13 APVLVAGA-GVTGRAVLAALTRF-GARPTVCDDDPDALRPHAERGVATVSSSDAVQQIADYALVVTSPGFPPTAPVLAAA 90 (487) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCEECCCCCHHHHCCCCEEEECCCCCCCCHHHHHH T ss_conf 98999915-68389999999978-69799998982577999865994863762265646778899899579989999999 Q ss_pred HHCCCCEEEE-CCCCCHHHHHH Q ss_conf 6125848982-27630355543 Q gi|254780294|r 70 KKNGINSRII-DTSTAHRIAPG 90 (311) Q Consensus 70 ~~~g~~~~vi-d~ss~~R~~~~ 90 (311) .+.|.. |+ |.--+||++.. T Consensus 91 ~~~gi~--i~~eieL~~~~~~~ 110 (487) T PRK03369 91 AAAGVP--IWGDVELAWRLDAA 110 (487) T ss_pred HHCCCC--EEEHHHHHHHHHHC T ss_conf 988990--76599999998744 No 204 >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] Probab=92.15 E-value=0.86 Score=24.13 Aligned_cols=89 Identities=15% Similarity=0.104 Sum_probs=63.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----------CCCC-----CHHHHCCCCEEEECCCCHHHHH Q ss_conf 90799975886789999999862997289999653007-----------8600-----6677479989999389837899 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----------NLRY-----REDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----------g~~~-----~~~~~~~~Divf~a~p~~~s~~ 64 (311) |.||+|+|- |-.|+...+.|.++- .+++....+... +-++ ..+.+.++|+++.+=+=..... T Consensus 7 ~~kv~V~GL-G~sG~a~a~~L~~~G-~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p 84 (448) T COG0771 7 GKKVLVLGL-GKSGLAAARFLLKLG-AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHP 84 (448) T ss_pred CCEEEEEEC-CCCCHHHHHHHHHCC-CEEEEECCCCCCCCHHHHHHHCCCCEEECCCCCHHCCCCCCEEEECCCCCCCCH T ss_conf 997999926-651099999999779-869998389876532344442037223137641100134778998999999888 Q ss_pred HHHHHHHCCCCEEEECCCCCHHHHHHHH Q ss_conf 9999861258489822763035554311 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTSTAHRIAPGWV 92 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~ss~~R~~~~vp 92 (311) ++.++...|.. .+-|..-+||..+..| T Consensus 85 ~v~~A~~~gi~-i~~dieL~~r~~~~~p 111 (448) T COG0771 85 LVEAAKAAGIE-IIGDIELFYRLSGEAP 111 (448) T ss_pred HHHHHHHCCCC-EEEHHHHHHHHCCCCC T ss_conf 99999986993-7748888987448999 No 205 >PRK11728 hypothetical protein; Provisional Probab=92.06 E-value=0.88 Score=24.06 Aligned_cols=90 Identities=17% Similarity=0.266 Sum_probs=55.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC--------------CCCCC----------------HH---- Q ss_conf 907999758867899999998629-97289999653007--------------86006----------------67---- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH--------------NLRYR----------------ED---- 45 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a--------------g~~~~----------------~~---- 45 (311) ||-|.|||| |-||.-+-+-|+++ |+.++..+-.+..- |.-+. .+ T Consensus 2 ~yDvvIIGg-GIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~ 80 (400) T PRK11728 2 MYDFVIIGG-GIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQ 80 (400) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 530999996-7999999999995599983999968999756335324232156435899999999999999999999998 Q ss_pred ---HHCCCCEEEECCCCHHHH---HHHHHHHHCCCCEEEECCCCCHHHHHHH Q ss_conf ---747998999938983789---9999986125848982276303555431 Q gi|254780294|r 46 ---LLNAADVSILCLPDVASL---EIIQLIKKNGINSRIIDTSTAHRIAPGW 91 (311) Q Consensus 46 ---~~~~~Divf~a~p~~~s~---~~~~~~~~~g~~~~vid~ss~~R~~~~v 91 (311) .+..+.-.+.|...+.-. ++..+..+.|..+..+|..-..+++|.+ T Consensus 81 ~~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~l~~~ei~~~eP~v 132 (400) T PRK11728 81 HGIPYEVCGKLLVATSELELERMEALYERAAANGIEVERLDAEELREREPNI 132 (400) T ss_pred CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCC T ss_conf 5999211686999779999999999999998569862896799999868865 No 206 >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a Probab=91.89 E-value=0.92 Score=23.95 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=67.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 07999758867899999998629972899996530078600667747998999938983789999998612584898227 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) +++.|+|-+..||+=|-.+|.++ ...++...|+.. . -++...+.|+++.|.+..-. +-+...+.| ..|||- T Consensus 45 k~vvViGrS~iVG~Pla~lL~~~-~atVt~chs~T~-~---l~~~~~~ADIvIsA~G~~~l--i~~~~vk~g--avvIDv 115 (168) T cd01080 45 KKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKTK-N---LKEHTKQADIVIVAVGKPGL--VKGDMVKPG--AVVIDV 115 (168) T ss_pred CEEEEECCCCCCHHHHHHHHHHC-CCEEEEECCCCC-C---HHHHHHHCCEEEEECCCCCC--CCHHHCCCC--CEEEEC T ss_conf 56999878730089999999848-997999768988-9---79974104535541587663--789995899--889966 Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 630355543110021000477652049607725842 Q gi|254780294|r 82 STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) .-.+-.|++---.+-.++.+..+.. .+.+...||- T Consensus 116 Gin~~~~~~~~kl~GDvd~~~v~~~-a~~iTPVPGG 150 (168) T cd01080 116 GINRVPDKSGGKLVGDVDFESAKEK-ASAITPVPGG 150 (168) T ss_pred CCCCCCCCCCCEEECCCCHHHHHHH-CEEECCCCCC T ss_conf 6542334889846377888999864-6386899996 No 207 >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.84 E-value=0.92 Score=23.95 Aligned_cols=72 Identities=14% Similarity=0.108 Sum_probs=51.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCCC-----HHHHCCCCEEEECCCCHHHHH Q ss_conf 079997588678999999986299728999965300------------786006-----677479989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRYR-----EDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~~-----~~~~~~~Divf~a~p~~~s~~ 64 (311) .||+|+|. |..|+.+.++|.++ ..++.....+.+ .|.++. .+.+.++|+|+.+-+=..... T Consensus 15 kkv~i~Gl-G~sG~a~a~~L~~~-g~~v~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~d~vv~SPgI~~~~p 92 (458) T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKL-GAKVTAFDKKSEEELGEISLELKEKGVNLELGENYLDKLTGFDVIFKTPSMRIDSP 92 (458) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHHHHHCCCEEEECCCHHHHCCCCCEEEECCCCCCCCH T ss_conf 96999978-78899999999978-89799998988431489999998579989957840542378888998998799899 Q ss_pred HHHHHHHCCCC Q ss_conf 99998612584 Q gi|254780294|r 65 IIQLIKKNGIN 75 (311) Q Consensus 65 ~~~~~~~~g~~ 75 (311) +...+.++|+. T Consensus 93 ~~~~a~~~gi~ 103 (458) T PRK01710 93 ELVKAKEEGAY 103 (458) T ss_pred HHHHHHHCCCC T ss_conf 99999987993 No 208 >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain; InterPro: IPR014089 This group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which they have been characterised , , . In most species this protein is bifunctional, existing as fused alpha-beta domains. In Pyrococcus and related species, however, the domains exist as separate polypeptides. This entry represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. One of these (along with its beta-domain partner) was characterised as ACS-II showing specificity for phenylacetyl-CoA . This entry excludes non-ACS-I paralogs. . Probab=91.79 E-value=0.53 Score=25.44 Aligned_cols=84 Identities=10% Similarity=0.246 Sum_probs=60.5 Q ss_pred CEEEEECCC---CHHHHHHHHHHHCC-CCEEEEEEECCC---CCC-CCCC---HHH-HCCCCEEEECCCCHHHHHHHHHH Q ss_conf 079997588---67899999998629-972899996530---078-6006---677-47998999938983789999998 Q gi|254780294|r 2 YKIFIDGEH---GTTGLKIRSRIVQR-KDLCLLSIPCEE---RHN-LRYR---EDL-LNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 2 ~kVaIvGAT---G~vG~~li~lL~~h-p~~~l~~l~s~~---~ag-~~~~---~~~-~~~~Divf~a~p~~~s~~~~~~~ 69 (311) .+|||+||| |=||-..++=|-+- =.-+++-+=.+. =-| .+.. .+. .+.+|+++.+.|....-+.+..+ T Consensus 8 ~SvAVIGAS~~~gKVGy~i~~NL~~~Gy~G~~YPVNpk~~i~i~Gr~k~Y~~~~~~dP~~VDLAVivvPa~~vp~v~eEC 87 (457) T TIGR02717 8 KSVAVIGASRDEGKVGYAIMKNLIEGGYKGKIYPVNPKAGIEILGRVKAYPSVLEIDPDEVDLAVIVVPAKLVPQVVEEC 87 (457) T ss_pred CCEEEECCCCCCCCCCHHHHEEEECCCCEEEEEEECCCCCEEEEECCCCCCCHHHCCCCCCCEEEEECCHHHHHHHHHHH T ss_conf 71589712488985100220000037830368762278871463011457871114899734799972856799999998 Q ss_pred HHCCCCEEEECCCCCHH Q ss_conf 61258489822763035 Q gi|254780294|r 70 KKNGINSRIIDTSTAHR 86 (311) Q Consensus 70 ~~~g~~~~vid~ss~~R 86 (311) -++|....||=-|+ |+ T Consensus 88 G~KGVkg~vvI~AG-F~ 103 (457) T TIGR02717 88 GEKGVKGAVVITAG-FK 103 (457) T ss_pred HHCCCEEEEEECCC-CC T ss_conf 61795189997148-64 No 209 >TIGR01915 npdG NADPH-dependent F420 reductase; InterPro: IPR010185 Members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.. Probab=91.70 E-value=0.76 Score=24.45 Aligned_cols=86 Identities=21% Similarity=0.252 Sum_probs=58.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC---CCE--EEEEEECCC--CCC---CC---------------C----CHHHHCCCCE Q ss_conf 07999758867899999998629---972--899996530--078---60---------------0----6677479989 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR---KDL--CLLSIPCEE--RHN---LR---------------Y----REDLLNAADV 52 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h---p~~--~l~~l~s~~--~ag---~~---------------~----~~~~~~~~Di 52 (311) +||||+|.||=-|.=|.=.|+.- |.- +=.-+-|++ .|- ++ + ..+..+..|+ T Consensus 1 mkIAvLGGTGdqG~GLALRlA~~glmPeG~~~~iIIGSR~~EkA~EaA~ka~e~l~~~G~d~~i~~~G~~N~~AA~~aDV 80 (233) T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGLMPEGVDNEIIIGSRDKEKAEEAAAKALEELGDQGVDRDIKVEGAENEEAAKRADV 80 (233) T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHCCE T ss_conf 96788448884025699999870778787775557704884569999999999997089513625754887788723897 Q ss_pred EEECCCCHHHHHHHHHHHHCCC-CEEEECCCCCHHH Q ss_conf 9993898378999999861258-4898227630355 Q gi|254780294|r 53 SILCLPDVASLEIIQLIKKNGI-NSRIIDTSTAHRI 87 (311) Q Consensus 53 vf~a~p~~~s~~~~~~~~~~g~-~~~vid~ss~~R~ 87 (311) |++++|-+........+++.=. ++.|||-.-..-. T Consensus 81 Vil~vP~~~~~~~l~~~~~~L~~dK~Vis~~VPl~~ 116 (233) T TIGR01915 81 VILAVPFDHVLKTLESIKDELEADKIVISPVVPLAS 116 (233) T ss_pred EEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCCH T ss_conf 899842222478999999985189289964787500 No 210 >PRK10124 putative UDP-glucose lipid carrier transferase; Provisional Probab=91.66 E-value=0.98 Score=23.79 Aligned_cols=84 Identities=5% Similarity=0.088 Sum_probs=53.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEECCCCC-CCC------CCH----HHHCCCCEEEECCCCHHHHHH--- Q ss_conf 07999758867899999998629972--89999653007-860------066----774799899993898378999--- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPCEERH-NLR------YRE----DLLNAADVSILCLPDVASLEI--- 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s~~~a-g~~------~~~----~~~~~~Divf~a~p~~~s~~~--- 65 (311) .+|+|||+ |-.|+++.+.+.++|+. ++..+..++.. +.. +++ ..-.++|-++.|+|....... T Consensus 145 r~v~IvG~-~~~~~~l~~~i~~~p~~G~~vvG~~dd~~~~~~~~~~lG~~~~l~~~~~~~~id~V~ialp~~~~~~i~~l 223 (464) T PRK10124 145 RMVAVAGD-LPAGQMLLESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMCDGARVKKL 223 (464) T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH T ss_conf 38999838-88999999999729667966999966887666789987899999999986899989996682368899999 Q ss_pred HHHHHHCCCCEEEECCCCCHH Q ss_conf 999861258489822763035 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTAHR 86 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~~R 86 (311) ...+.+.+..++++-.-..|+ T Consensus 224 v~~l~~~~v~v~~vPd~~~~~ 244 (464) T PRK10124 224 VHQLADTTCSVLLIPDVFTFN 244 (464) T ss_pred HHHHHHCCCEEEEECCHHHHC T ss_conf 999961895599946546521 No 211 >COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown] Probab=91.52 E-value=1 Score=23.70 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=49.9 Q ss_pred EEECCCCHHHHHHHHHHHCCCCEEEE--EEECCCCCCCCCCHHH-----------HCCCCEEEECCCC------HHHHHH Q ss_conf 99758867899999998629972899--9965300786006677-----------4799899993898------378999 Q gi|254780294|r 5 FIDGEHGTTGLKIRSRIVQRKDLCLL--SIPCEERHNLRYREDL-----------LNAADVSILCLPD------VASLEI 65 (311) Q Consensus 5 aIvGATG~vG~~li~lL~~hp~~~l~--~l~s~~~ag~~~~~~~-----------~~~~Divf~a~p~------~~s~~~ 65 (311) .+.=+||+||.+.++.|..+|.++++ +..|...+||.+.+.. -.+.|+++.|... + +-+- T Consensus 5 vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~-~~~~ 83 (350) T COG3804 5 VVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP-SVDE 83 (350) T ss_pred EEEECCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCEECCCCCEEEECCCC-HHHH T ss_conf 589625557799999997088971689995174001301787648888516865232220002666315610261-2999 Q ss_pred HHHHHHCCCCEEEECCCCC Q ss_conf 9998612584898227630 Q gi|254780294|r 66 IQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 66 ~~~~~~~g~~~~vid~ss~ 84 (311) ..++..+|.+ ||...+- T Consensus 84 y~rlL~aGiN--Vv~~g~~ 100 (350) T COG3804 84 YARLLRAGIN--VVTPGPV 100 (350) T ss_pred HHHHHHCCCC--EECCCCC T ss_conf 9999975870--6615853 No 212 >KOG2013 consensus Probab=91.37 E-value=0.11 Score=29.76 Aligned_cols=68 Identities=12% Similarity=0.191 Sum_probs=49.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC---------------CCCCCCC------------------------- Q ss_conf 079997588678999999986299728999965---------------3007860------------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC---------------EERHNLR------------------------- 41 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s---------------~~~ag~~------------------------- 41 (311) -||-+||| |=.|-||++.|.--..-+++.+.. +++.|+. T Consensus 13 ~riLvVGa-GGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhanI 91 (603) T KOG2013 13 GRILVVGA-GGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHANI 91 (603) T ss_pred CEEEEEEC-CCCCHHHHHHHHHHCCCEEEEEECCCEECCCHHHHHEEEHHHCCCHHHHHHHHHHHHHCCCCCEEECCCCC T ss_conf 71899905-73219999999982677057973253202101245502041227618899999999749777468511334 Q ss_pred ----CCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf ----06677479989999389837899999986 Q gi|254780294|r 42 ----YREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 42 ----~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) +..++|...|+||.||++-.++.|+.+.. T Consensus 92 ~e~~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C 124 (603) T KOG2013 92 KEPKFNVEFFRQFDIVLNALDNLAARRYVNRMC 124 (603) T ss_pred CCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHH T ss_conf 685327899999999998522398998988888 No 213 >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.31 E-value=0.58 Score=25.17 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=51.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCC--C---------CCCHHHHCCCCEEEECCCCHHHHHHHHHH Q ss_conf 07999758867899999998629972899996-530078--6---------00667747998999938983789999998 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHN--L---------RYREDLLNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag--~---------~~~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311) +||+|+|. |..|....+.|.++ .+...+. ++.... + .+.+..+.++|+++.+=+=....++...+ T Consensus 7 K~v~V~Gl-G~sG~a~~~~L~~~--~~~~~~dd~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iV~SPGI~~~~p~~~~a 83 (450) T PRK01368 7 QKIGVFGL-GKTGISVYEELQNK--YDLIVYDDLKANRDIFEELFSKNAIIALSDSRWQNLDKIVLSPGIPLTHEIVKIA 83 (450) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC--CCEEEEECCCCCHHHHHHHHCCCCEECCCCCCHHCCCEEEECCCCCCCCHHHHHH T ss_conf 90899958-78799999999719--9989998996564789975214836025711152199999899619989999999 Q ss_pred HHCCCCEEEE-CCCCCHHHHH Q ss_conf 6125848982-2763035554 Q gi|254780294|r 70 KKNGINSRII-DTSTAHRIAP 89 (311) Q Consensus 70 ~~~g~~~~vi-d~ss~~R~~~ 89 (311) .+.|.. |+ |.--+||..+ T Consensus 84 ~~~~i~--i~~eiel~~~~~~ 102 (450) T PRK01368 84 KNFNIP--ITSDIDLLFEKSK 102 (450) T ss_pred HHCCCC--EEEHHHHHHHHCC T ss_conf 987995--8769999997667 No 214 >PRK12921 2-dehydropantoate 2-reductase; Provisional Probab=91.31 E-value=1.1 Score=23.57 Aligned_cols=68 Identities=22% Similarity=0.266 Sum_probs=45.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC----------------HHHHCCCCEEEECCCC Q ss_conf 079997588678999999986299728999965300------786006----------------6774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR----------------EDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~----------------~~~~~~~Divf~a~p~ 59 (311) .||+|+|| |.+|.-+=-.|.+. ..++.+++..++ .|.++. +.....+|++|+|+=. T Consensus 1 MkI~I~Ga-GAiG~~~a~~L~~~-g~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~Ks 78 (306) T PRK12921 1 MKIAVVGA-GAVGGTFGARLLEA-GRDVTFLGRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAVKA 78 (306) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEECC T ss_conf 98999992-49999999999836-99889997000999999789699977976998061050805656897689997045 Q ss_pred HHHHHHHHHHHH Q ss_conf 378999999861 Q gi|254780294|r 60 VASLEIIQLIKK 71 (311) Q Consensus 60 ~~s~~~~~~~~~ 71 (311) -...+..+.+.. T Consensus 79 ~~~~~a~~~l~~ 90 (306) T PRK12921 79 YQLDAAIPDLKP 90 (306) T ss_pred CCHHHHHHHHHH T ss_conf 677999999986 No 215 >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=91.28 E-value=1 Score=23.60 Aligned_cols=83 Identities=16% Similarity=0.280 Sum_probs=55.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCC-C----CHHHHCCCCEEEECCCCHHHHHHHHHH Q ss_conf 799975886789999999862997289999653007--------860-0----667747998999938983789999998 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLR-Y----REDLLNAADVSILCLPDVASLEIIQLI 69 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~-~----~~~~~~~~Divf~a~p~~~s~~~~~~~ 69 (311) ||.|+|. |-.|....++|.++ ..++.....++.. |.+ + ..+.+.++|+++.+-+=.....+...+ T Consensus 19 kvlV~Gl-G~SG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPGI~~~~p~l~~a 96 (476) T PRK00141 19 RVLVAGA-GVSGLGIAKMLSEL-GCDVVVADDNETQRHMLIEVVDVADISTAQASDALDSYSIVVTSPGWRPDSPLLVDA 96 (476) T ss_pred CEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHHHHCCCCEECCCCHHHHHCCCCEEEECCCCCCCCHHHHHH T ss_conf 8899922-78899999999978-997999989987035788747985651553065646899999899789979999999 Q ss_pred HHCCCCEEEE-CCCCCHHHHH Q ss_conf 6125848982-2763035554 Q gi|254780294|r 70 KKNGINSRII-DTSTAHRIAP 89 (311) Q Consensus 70 ~~~g~~~~vi-d~ss~~R~~~ 89 (311) .+.|.. |+ |.--+||.+. T Consensus 97 ~~~gi~--viseiel~~~~~~ 115 (476) T PRK00141 97 QSAGLE--VIGDVELAWRLDQ 115 (476) T ss_pred HHCCCC--EEEHHHHHHHHHH T ss_conf 987995--7719999998611 No 216 >PRK10675 UDP-galactose-4-epimerase; Provisional Probab=91.16 E-value=1.1 Score=23.47 Aligned_cols=31 Identities=13% Similarity=0.321 Sum_probs=25.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 07999758867899999998629972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) .||-|-||||++|..|++.|.+. ..++..+. T Consensus 1 MkvLVTGg~GFIGs~l~~~Ll~~-g~~V~~~d 31 (338) T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQN-GHDVVILD 31 (338) T ss_pred CEEEEECCCCHHHHHHHHHHHHC-CCEEEEEE T ss_conf 91999898767999999999978-49899998 No 217 >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] Probab=91.16 E-value=0.91 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.166 Sum_probs=14.8 Q ss_pred HHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 677479989999389837899999986 Q gi|254780294|r 44 EDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 44 ~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .+...++|++.. ....++.+...... T Consensus 40 ~~~~~~~d~~~~-~~~~v~~~~l~~~~ 65 (324) T COG0111 40 LEALADADALIV-SVTPVTEEVLAAAP 65 (324) T ss_pred HHHCCCCCEEEE-ECCCCCHHHHHCCC T ss_conf 874033788999-36888999982188 No 218 >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] Probab=91.11 E-value=1.1 Score=23.44 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=55.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------CC------CCCCHHHHCCCCEEEECCCC-HHHHHHH Q ss_conf 079997588678999999986299728999965300--------78------60066774799899993898-3789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------HN------LRYREDLLNAADVSILCLPD-VASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------ag------~~~~~~~~~~~Divf~a~p~-~~s~~~~ 66 (311) .+|.|+|. |-||.+=+++|.+- ..+++.++-+.. .+ ..+..+.+.+++++|-|+++ +..+.+. T Consensus 13 k~VlvvGg-G~va~rKa~~ll~~-ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~ 90 (210) T COG1648 13 KKVLVVGG-GSVALRKARLLLKA-GADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIA 90 (210) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHHHHCCCCHHHCCCCHHHHCCCEEEEEECCCHHHHHHHH T ss_conf 77999899-89999999999746-99799987874499999998348531002236365368249999169989999999 Q ss_pred HHHHHCCCCEEEECCCC Q ss_conf 99861258489822763 Q gi|254780294|r 67 QLIKKNGINSRIIDTST 83 (311) Q Consensus 67 ~~~~~~g~~~~vid~ss 83 (311) ..+.+.+.-+-++|... T Consensus 91 ~~a~~~~i~vNv~D~p~ 107 (210) T COG1648 91 KAARERRILVNVVDDPE 107 (210) T ss_pred HHHHHHCCCEEECCCCC T ss_conf 99999399356048846 No 219 >cd04510 consensus Probab=90.88 E-value=0.77 Score=24.43 Aligned_cols=56 Identities=11% Similarity=0.154 Sum_probs=40.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCC----CCCCC------------------CHHHHCCCCEE Q ss_conf 07999758867899999998629------9728999965300----78600------------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEER----HNLRY------------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~----ag~~~------------------~~~~~~~~Div 53 (311) +||+|-||+|..|--|+-+|..- ..+.|+++..... .|-.. -++.|+++|++ T Consensus 2 ~~V~VTGAAGqI~Y~Ll~~Ia~G~vfG~dq~V~L~Lldi~~~~~~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a 81 (334) T cd04510 2 LQVWITSASAPVCYHLIPHLASGDVFGMLTEISIHLLDTSESEEMLKGLVMEVFDLAFPLLREVSVHTDVMLAFQQAHVI 81 (334) T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCEEEEHHHCCCHHHCCEEEECCHHHHHCCCCEE T ss_conf 09999577379999999998478766999759999668666788753305511404654338658857878973668889 Q ss_pred EECC Q ss_conf 9938 Q gi|254780294|r 54 ILCL 57 (311) Q Consensus 54 f~a~ 57 (311) +|-. T Consensus 82 ilvg 85 (334) T cd04510 82 IVLD 85 (334) T ss_pred EEEC T ss_conf 9970 No 220 >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed Probab=90.79 E-value=0.86 Score=24.12 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=49.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCCCC---HHHHCCCC---EEEECCCCHHHHH-HHH Q ss_conf 0799975886789999999862997289999653007-------86006---67747998---9999389837899-999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLRYR---EDLLNAAD---VSILCLPDVASLE-IIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~~~---~~~~~~~D---ivf~a~p~~~s~~-~~~ 67 (311) .|||+||- |.-|..|-+-|.++ .+++..+.-+..+ |-... .+....+| ++|+++|++..-+ ... T Consensus 1 MkIGfIGL-G~MG~~mA~nL~~~-G~~V~v~dr~~~~~~~~~~~ga~~~~s~~e~~~~~d~prvI~l~lp~~~~Vd~Vi~ 78 (301) T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRG-GHEVVGYDRNPEAVEALAAEGATGAASLEELVAKLPAPRVVWLMVPAGEITDSTID 78 (301) T ss_pred CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH T ss_conf 97999834-58799999999968-99079976999999999985994329999999707888779998179703899999 Q ss_pred H---HHHCCCCEEEECCCCCH Q ss_conf 9---86125848982276303 Q gi|254780294|r 68 L---IKKNGINSRIIDTSTAH 85 (311) Q Consensus 68 ~---~~~~g~~~~vid~ss~~ 85 (311) . ..+.| ..+||.|+.+ T Consensus 79 ~l~~~l~~g--~iiID~sts~ 97 (301) T PRK09599 79 ELAPLLEAG--DIVIDGGNSY 97 (301) T ss_pred HHHHHCCCC--CEEEECCCCC T ss_conf 999627899--8887089998 No 221 >KOG2666 consensus Probab=90.69 E-value=0.34 Score=26.59 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=41.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC-CCCCC------CC----------------------CHHHHCCC Q ss_conf 907999758867899999998629-97289999653-00786------00----------------------66774799 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE-ERHNL------RY----------------------REDLLNAA 50 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~-~~ag~------~~----------------------~~~~~~~~ 50 (311) |.||+-+|| ||||+--...++-. |.++++.+.-+ .+... .+ -+....+. T Consensus 1 ~~KicCiGA-GYVGGPT~aviAlkCP~i~vtvVD~s~~rInaWNSd~LPIYEPGLdevVk~cRgkNLFFStdiek~i~Ea 79 (481) T KOG2666 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEA 79 (481) T ss_pred CCEEEEECC-CCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHHC T ss_conf 935999567-7668830644310389548999866837765016888865687779999983487515515668776542 Q ss_pred CEEEECC Q ss_conf 8999938 Q gi|254780294|r 51 DVSILCL 57 (311) Q Consensus 51 Divf~a~ 57 (311) |++|.+. T Consensus 80 DlvFiSV 86 (481) T KOG2666 80 DLVFISV 86 (481) T ss_pred CEEEEEE T ss_conf 5699993 No 222 >PRK10430 DNA-binding transcriptional activator DcuR; Provisional Probab=90.66 E-value=1.2 Score=23.18 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=63.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEE Q ss_conf 90799975886789999999862997289999653007860066774799899993--8983789999998612584898 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRI 78 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~v 78 (311) |+||-||==-=.+-.-+.+.|++.|.|++...+++-.....+-...-..+|++++- +|+.-.-++...+++.+..+-| T Consensus 1 MirVLIVEDD~~v~~~~~~~l~~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~~~~~~V 80 (239) T PRK10430 1 MINVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDV 80 (239) T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCEE T ss_conf 98799992989999999999851899089999899999999996579998589978999999789999999985899819 Q ss_pred ECCCCC Q ss_conf 227630 Q gi|254780294|r 79 IDTSTA 84 (311) Q Consensus 79 id~ss~ 84 (311) |=.|++ T Consensus 81 I~ITa~ 86 (239) T PRK10430 81 IVISSA 86 (239) T ss_pred EEEEEC T ss_conf 999726 No 223 >TIGR01746 Thioester-redct thioester reductase domain; InterPro: IPR010080 This domain includes the C-terminal domain from the fungal alpha aminoadipate reductase enzyme (also known as aminoadipate semialdehyde dehydrogenase) which is involved in the biosynthesis of lysine , as well as the reductase-containing component of the myxochelin biosynthetic gene cluster, MxcG . The mechanism of reduction involves activation of the substrate by adenylation and transfer to a covalently-linked pantetheine cofactor as a thioester. This thioester is then reduced to give an aldehyde (thus releasing the product) and a regenerated pantetheine thiol ; in myxochelin biosynthesis this aldehyde is further reduced to an alcohol or converted to an amine by an aminotransferase. This is a fundamentally different reaction than beta-ketoreductase domains of polyketide synthases which act at a carbonyl two carbons removed from the thioester and forms an alcohol as a product. The majority of bacterial sequences containing this domain are non-ribosomal peptide synthetases in which this domain is similarly located proximal to a thiolation domain (IPR006163 from INTERPRO). In some cases this domain is found at the end of a polyketide synthetase enzyme, but is unlike ketoreductase domains which are found before the thiolase domains. Exceptions to this observed relationship with the thiolase domain include three proteins which consist of stand-alone reductase domains (from Mycobacterium leprae, Anabaena and from Streptomyces coelicolor) and one protein (from Nostoc) which contains N-terminal homology with a small group of hypothetical proteins but no evidence of a thiolation domain next to the putative reductase domain.; GO: 0004043 L-aminoadipate-semialdehyde dehydrogenase activity. Probab=90.53 E-value=0.35 Score=26.55 Aligned_cols=30 Identities=13% Similarity=0.434 Sum_probs=24.3 Q ss_pred EEEEECCCCHHHHHHHHHHHCC---CCEEEEEE Q ss_conf 7999758867899999998629---97289999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR---KDLCLLSI 32 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h---p~~~l~~l 32 (311) +|=+-|||||.|+.|++-|.++ +..+|..| T Consensus 1 ~vlLTGAtGfLG~~ll~~Ll~~~~s~~~~v~CL 33 (405) T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRNDSTEAKVICL 33 (405) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 958733626789999999972048864056877 No 224 >PRK08666 5'-methylthioadenosine phosphorylase; Validated Probab=90.41 E-value=0.27 Score=27.22 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=44.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHH-HHHHHHHH Q ss_conf 90799975886789999999862997289999653007860066774799899993--------8983789-99999861 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASL-EIIQLIKK 71 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~-~~~~~~~~ 71 (311) |.||||+|.||+-.-.++ ++.....+..=.++. ++.--.+++.|++|+. .||.+-- .-.-.+.+ T Consensus 1 m~kigIIgGSGl~~~~~l---~~~~~~~v~TpyG~~----~~~~g~~~g~~v~fl~RHG~~h~~~p~~inyrAni~alk~ 73 (261) T PRK08666 1 MVRIAIIGGTGVYDPPIL---ENIREETVETPYGEV----KVKIGEYAGEEVAFLARHGKGHSVPPHLINYRANIWALKE 73 (261) T ss_pred CCEEEEECCCCCCCCHHC---CCCEEEEEECCCCCC----CEEEEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 974999888766760014---766078858998886----5599998998999978889998878533760365999997 Q ss_pred CCCCEEEECCCCCHHHHHHHH Q ss_conf 258489822763035554311 Q gi|254780294|r 72 NGINSRIIDTSTAHRIAPGWV 92 (311) Q Consensus 72 ~g~~~~vid~ss~~R~~~~vp 92 (311) .|++.. |--+++=-+.++++ T Consensus 74 LGv~~i-i~tnA~Gsl~~~~~ 93 (261) T PRK08666 74 LGVERI-LATSAVGSLNPNMK 93 (261) T ss_pred CCCCEE-EEECCCCCCCCCCC T ss_conf 599789-98402001555689 No 225 >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed Probab=90.39 E-value=1.3 Score=23.04 Aligned_cols=141 Identities=15% Similarity=0.103 Sum_probs=73.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------HHHH---CCCCEEEECCCCHHH-HHHHH Q ss_conf 079997588678999999986299728999965300786006----------6774---799899993898378-99999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------EDLL---NAADVSILCLPDVAS-LEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------~~~~---~~~Divf~a~p~~~s-~~~~~ 67 (311) .|||++|- |.-|..|-+-|.++ -+++..+.-+..+-+++. ++.. +..+++|+++|++.. .+... T Consensus 1 MkIGfIGL-G~MG~~mA~nL~~~-G~~V~v~d~~~~~~~~~~~~g~~~~~s~~e~~~~l~~~~vI~~~vp~g~~v~~vi~ 78 (298) T PRK12490 1 MKLGLIGL-GKMGGNMAERLRED-GHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRAIWVMVPAGEVTESVLK 78 (298) T ss_pred CEEEEECH-HHHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCEECCCHHHHHHHCCCCCEEEEECCCCHHHHHHHH T ss_conf 97999834-67689999999977-99489984998999999986995428999999737899889997689455999999 Q ss_pred HH---HHCCCCEEEECCCCCHHHHH----------HHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCC Q ss_conf 98---61258489822763035554----------311002100047765204960772584211331124788888503 Q gi|254780294|r 68 LI---KKNGINSRIIDTSTAHRIAP----------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKL 134 (311) Q Consensus 68 ~~---~~~g~~~~vid~ss~~R~~~----------~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~ 134 (311) .+ .+.| ..+||.|..+-.+. ++.++=-.|.........+..+ =+|+... ..-.+.|+++... T Consensus 79 ~l~~~L~~g--~iiID~sts~~~~t~~~~~~l~~~gi~flDapVSGG~~GA~~Glsi--MvGG~~~-~~~~~~pil~~ia 153 (298) T PRK12490 79 DLYPLLSPG--DIVIDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCL--MVGGDKE-IYDRLEPVFDALA 153 (298) T ss_pred HHHHHCCCC--CEEECCCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHCCCEE--ECCCCHH-HHHHHHHHHHHHC T ss_conf 688526999--8885288789999999999999759903055357887899669868--5189999-9999999999966 Q ss_pred CCCCCCEEEEEECCCCCCCC Q ss_conf 45565026765123333561 Q gi|254780294|r 135 LPDRYPITINAVSGYTGGGK 154 (311) Q Consensus 135 i~~~~~~~~~~~sg~sgaG~ 154 (311) -+. .++ +-|-+|+|. T Consensus 154 ~~~--~~~---~~G~~GsGh 168 (298) T PRK12490 154 PEN--GYV---HAGPVGSGH 168 (298) T ss_pred CCC--CCC---CCCCCCHHH T ss_conf 745--857---208987538 No 226 >PRK08328 hypothetical protein; Provisional Probab=90.36 E-value=1.3 Score=23.02 Aligned_cols=96 Identities=18% Similarity=0.218 Sum_probs=58.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC--C---------------------- Q ss_conf 079997588678999999986299728999---------------9653007860--0---------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR--Y---------------------- 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~--~---------------------- 42 (311) .||.|+|+ |=.|......|+.--.-+|+. +..++..|+. . T Consensus 28 s~VlvvG~-GGlGs~~~~~La~~GvG~i~lvD~D~ve~SNLnRQil~~~~diG~~~K~~~a~~~l~~iNp~v~i~~~~~~ 106 (230) T PRK08328 28 AKVAVVGV-GGLGSPVAYYLAAAGVGTVLLIDEQTPELSNLNRQILHWEEDVGKNPKPISAKWKLERFNSDIKIETFVGR 106 (230) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCEEECCCCHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCEEEEHHHHH T ss_conf 97899887-87899999999984898689874878751563255403087747710399999999975995057526644 Q ss_pred -C----HHHHCCCCEEEECCCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHCCCCCCHH Q ss_conf -6----677479989999389837899999986-1258489822763035554311002100047 Q gi|254780294|r 43 -R----EDLLNAADVSILCLPDVASLEIIQLIK-KNGINSRIIDTSTAHRIAPGWVYGFPEMDKS 101 (311) Q Consensus 43 -~----~~~~~~~Divf~a~p~~~s~~~~~~~~-~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~ 101 (311) + ++.++++|+|+-|+++-.++.+...+. +.+. .+|. ++..+++-.+...+|...+. T Consensus 107 i~~~n~~~ll~~~DlViD~tDn~~tr~~ln~~c~~~~i--PlI~-g~v~g~~Gqv~~~~p~~~~~ 168 (230) T PRK08328 107 LTEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGI--PLVH-GAVEGMYGQVTTIVPGKTKR 168 (230) T ss_pred HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCC--CEEE-EEEECCEEEEEEEECCCCCC T ss_conf 23777986200598999988998999999999998399--7799-99661799999980899998 No 227 >PRK06436 glycerate dehydrogenase; Provisional Probab=90.34 E-value=1.1 Score=23.39 Aligned_cols=18 Identities=17% Similarity=0.220 Sum_probs=11.1 Q ss_pred CCCHHHHHHHHHHHHHHH Q ss_conf 221013689999999987 Q gi|254780294|r 290 DNLGKGASGAAIQNMDLL 307 (311) Q Consensus 290 DNL~KGAAgnAVQn~nlm 307 (311) +..++-++..|++|..-. T Consensus 262 ~e~~~~~~~~a~~Ni~~f 279 (303) T PRK06436 262 GEIMQPAVALAFENIKNF 279 (303) T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 999999999999999999 No 228 >TIGR01759 MalateDH-SF1 malate dehydrogenase; InterPro: IPR010945 Malate dehydrogenases catalyse the interconversion of malate and oxaloacetate using dinucleotide cofactors . The enzymes in this entry are found in archaea, bacteria and eukaryotes and fall into two distinct groups. The first group are cytoplamsic, NAD-dependent enzymes which participate in the citric acid cycle (1.1.1.37 from EC). The second group are found in plant chloroplasts, use NADP as cofactor, and participate in the C4 cycle (1.1.1.82 from EC). Structural studies indicate that these enzymes are homodimers with very sinmilar overall topology, though the chloroplast enzymes also have N- and C-terminal extensions, and all contain the classical Rossman fold for NAD(P)H binding , , , . Substrate specificity is determined by a mobile loop at the active site which uses charge balancing to discriminate between the correct substrates (malate and oxaloacetate) and other potential oxo/hydroxyacid substrates the enzyme may encounter within the cell .; GO: 0016615 malate dehydrogenase activity, 0006108 malate metabolic process. Probab=90.27 E-value=1 Score=23.65 Aligned_cols=107 Identities=21% Similarity=0.367 Sum_probs=68.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCCC------CCCC----------------HHHHCCCCEE Q ss_conf 07999758867899999998629------972899996530078------6006----------------6774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERHN------LRYR----------------EDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~ag------~~~~----------------~~~~~~~Div 53 (311) .||+|=||+|.+|=-|+=.|+.= -.++|++|......+ +++. ++.|+++|++ T Consensus 4 ~rV~VTGAAGQI~Y~Ll~~iA~G~~fG~Dqpv~L~LLdIP~A~~~LeGV~MEL~DCAFPlL~~v~~T~~p~eAF~dvD~A 83 (329) T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPQAMKALEGVVMELEDCAFPLLAGVVATTDPEEAFKDVDVA 83 (329) T ss_pred EEEEEECCHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEECCCHHHHHCCCCEE T ss_conf 37997374467899998898556104889846888607723311334435535306452235112216868751898757 Q ss_pred EE--CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH Q ss_conf 99--3898378999999861258489822763035554311002100047765204960772584211331124 Q gi|254780294|r 54 IL--CLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI 125 (311) Q Consensus 54 f~--a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la 125 (311) |+ |.|-..-++-...+...| .-|+-.-.. +|..+.+..+ =-.|.|| |+|.|+++. T Consensus 84 lLvGa~PRK~GMER~DLL~~Ng---------~IF~~QG~a------Ln~~Ak~~vK-VLVVGNP-aNTNaLIa~ 140 (329) T TIGR01759 84 LLVGAFPRKPGMERRDLLSKNG---------KIFKEQGKA------LNKVAKKDVK-VLVVGNP-ANTNALIAS 140 (329) T ss_pred EEECCCCCCCCCCHHHHHHHCC---------HHHHHHHHH------HHHHCCCCCE-EEEECCC-CHHHHHHHH T ss_conf 7613668958844799987222---------546879999------9986189856-9985298-627999999 No 229 >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=90.26 E-value=1.3 Score=22.97 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=51.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC--------CCC-----CCHHHHCCCCEEEECCCCHHHHHHHHH Q ss_conf 0799975886789999999862997289999653007--------860-----066774799899993898378999999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH--------NLR-----YREDLLNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a--------g~~-----~~~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311) .||.|+|. |-.|.-..++|.++ ..++.....+.+. +-. ..++.+.++|+++.+-+=......... T Consensus 7 k~v~V~Gl-G~sG~s~~~~L~~~-G~~v~~~D~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p~~~~ 84 (438) T PRK03806 7 KNVVIIGL-GLTGLSCVDFFLAR-GVTPRVMDTRMTPPGLDKLPENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSA 84 (438) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCHHHHHHHCCCCEEECCCCHHHHCCCCEEEECCCCCCCCHHHHH T ss_conf 98999945-78889999999978-99699998999900578864588466577796680679999989978998989999 Q ss_pred HHHCCCC Q ss_conf 8612584 Q gi|254780294|r 69 IKKNGIN 75 (311) Q Consensus 69 ~~~~g~~ 75 (311) +.++|.. T Consensus 85 a~~~~i~ 91 (438) T PRK03806 85 AADAGVE 91 (438) T ss_pred HHHCCCC T ss_conf 9987994 No 230 >PRK13984 putative oxidoreductase; Provisional Probab=89.98 E-value=1.1 Score=23.41 Aligned_cols=61 Identities=15% Similarity=0.075 Sum_probs=42.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C Q ss_conf 07999758867899999998629972899996530078600--------------------------------------6 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~ 43 (311) +||||||| |=.|..--..|... -.+++.+-.....|--+ + T Consensus 284 KKVAVIGs-GPAGLaaA~~Lar~-Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGkDit 361 (604) T PRK13984 284 KKVAIVGS-GPAGLSAAYFLATM-GYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGKDIS 361 (604) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCCCC T ss_conf 98999898-68999999999986-98689974567789723315872228789999999999972989976857798478 Q ss_pred -HHHHCCCCEEEECCCCHHHHH Q ss_conf -677479989999389837899 Q gi|254780294|r 44 -EDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 44 -~~~~~~~Divf~a~p~~~s~~ 64 (311) +++.+++|.||+|.+...++. T Consensus 362 ~eeL~~~yDAVfLa~Ga~~~r~ 383 (604) T PRK13984 362 LEELREKHDAVFVSTGFTLGRS 383 (604) T ss_pred HHHHHHCCCEEEEECCCCCCCC T ss_conf 9999705899999538887766 No 231 >PRK08410 2-hydroxyacid dehydrogenase; Provisional Probab=89.83 E-value=1.2 Score=23.34 Aligned_cols=62 Identities=15% Similarity=0.015 Sum_probs=35.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHH Q ss_conf 079997588678999999986299728999965300786006677479989999389837899999986 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIK 70 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~ 70 (311) .||.|+=+.++ +..=++.|.+.. |++.+...+. .++. +...++|+++.. ...++++...++. T Consensus 1 mki~~ld~~~~-~~~~~~~l~~~~--e~~~~~~~~~--ee~~-~~i~dadili~~-~~~i~~e~l~~a~ 62 (311) T PRK08410 1 MKIVILDAKTL-GDVDLSVFNEFG--DFQIYDTTSP--EEVI-ERIKDANIIITN-KVVIDKEVLSALP 62 (311) T ss_pred CEEEEEECCCC-CCCCHHHHHCCC--CEEEECCCCH--HHHH-HHHCCCCEEEEC-CCCCCHHHHHCCC T ss_conf 95999937867-722658770577--5899789898--9999-983899499974-8854999993699 No 232 >PRK05708 2-dehydropantoate 2-reductase; Provisional Probab=89.57 E-value=1.5 Score=22.63 Aligned_cols=78 Identities=12% Similarity=0.109 Sum_probs=45.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-------CC-CCC--------------CHHHHCCCCEEEECCCC Q ss_conf 079997588678999999986299728999965300-------78-600--------------66774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-------HN-LRY--------------REDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-------ag-~~~--------------~~~~~~~~Divf~a~p~ 59 (311) .||+|+|| |.+|.-+--.|.+.- .++++++.... .| ..+ ..+....+|++|.|+=. T Consensus 3 MkI~IiGa-GAiG~~~a~~L~~ag-~dV~lv~r~~~~~~~~~~~g~~~~~~~~~~~~~~v~~~~~~~~~~~D~vivavK~ 80 (305) T PRK05708 3 MTWHILGA-GSLGSLWACRLARAG-LPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAPEPIHRLLVACKA 80 (305) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCEEEEECCCEEEEECCCCCCCCCCCCCEEEEEECC T ss_conf 88999882-399999999998489-9739999478999999978998998689557874046576657887789998042 Q ss_pred HHHHHHHHHHHHC-CCCEEEECC Q ss_conf 3789999998612-584898227 Q gi|254780294|r 60 VASLEIIQLIKKN-GINSRIIDT 81 (311) Q Consensus 60 ~~s~~~~~~~~~~-g~~~~vid~ 81 (311) --..+.++.+... +.++.|+.. T Consensus 81 ~~~~~a~~~l~~~l~~~t~Iv~l 103 (305) T PRK05708 81 YDAEPAVASLAHRLAPGAELLLL 103 (305) T ss_pred CCHHHHHHHHHHHCCCCCEEEEE T ss_conf 56899999988644999589994 No 233 >PRK03673 competence damage-inducible protein A; Provisional Probab=89.54 E-value=1 Score=23.68 Aligned_cols=113 Identities=17% Similarity=0.075 Sum_probs=63.9 Q ss_pred CCEEEEECCCCHHHHHHH-------------HHHHCC--CCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC-----CCCH Q ss_conf 907999758867899999-------------998629--97289999653007860066774799899993-----8983 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIR-------------SRIVQR--KDLCLLSIPCEERHNLRYREDLLNAADVSILC-----LPDV 60 (311) Q Consensus 1 M~kVaIvGATG~vG~~li-------------~lL~~h--p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a-----~p~~ 60 (311) |.|+.|+- ||-||+ +.|.+. +......+.-+...=.+.-.......|+++.+ +.++ T Consensus 1 MMkaeIIs----iG~ElL~G~i~dTNa~~la~~L~~~G~~v~~~~tVgD~~~~i~~~l~~a~~r~DlVI~tGGLGPT~DD 76 (396) T PRK03673 1 MLRVEMLS----TGDEVLHGQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD 76 (396) T ss_pred CCEEEEEE----ECCCHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCH T ss_conf 92699999----85410057433441999999999779818899992898999999999996149999993884899833 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHH---HHCCCCCCHHHHHHCCCCEEEECCCCCCC Q ss_conf 7899999986125848982276303555431---10021000477652049607725842113 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGW---VYGFPEMDKSQKEKIRSARYITNPGCYAT 120 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v---pl~vPEvN~~~~~~~~~~~iIanPnC~~t 120 (311) .+++.+.++.... .+.|-...-++..-+ -..+|+-|..+-...+++.++.||.-++. T Consensus 77 lT~eavA~~~g~~---L~~~~~~l~~i~~~f~~rgr~m~~~N~kQA~lPega~vl~N~~GTAp 136 (396) T PRK03673 77 LSALAAATAKGEG---LVLHEAWLAEMERYFHERGRVMAPSNRKQAELPASAEFIDNPVGTAC 136 (396) T ss_pred HHHHHHHHHHCCC---CEEHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCEECCCCCCCCC T ss_conf 5799999985688---27619999999999997299998456752136799888545886576 No 234 >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] Probab=89.37 E-value=1.6 Score=22.54 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=47.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC---------------HHHHCCCCEEEECCCCH Q ss_conf 079997588678999999986299728999965300------786006---------------67747998999938983 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR---------------EDLLNAADVSILCLPDV 60 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~---------------~~~~~~~Divf~a~p~~ 60 (311) .||+|+|| |.+|.-+--.|.+.. -++.++.-+++ .|..+. .+....+|++|.++=+- T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g-~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~ 78 (307) T COG1893 1 MKILILGA-GAIGSLLGARLAKAG-HDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAY 78 (307) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEECCC T ss_conf 95999878-789999999998589-9579981089999998789799816885224432356733367888899980422 Q ss_pred HHHHHHHHHHHC Q ss_conf 789999998612 Q gi|254780294|r 61 ASLEIIQLIKKN 72 (311) Q Consensus 61 ~s~~~~~~~~~~ 72 (311) ...+..+.+... T Consensus 79 q~~~al~~l~~~ 90 (307) T COG1893 79 QLEEALPSLAPL 90 (307) T ss_pred CHHHHHHHHHHH T ss_conf 389999998730 No 235 >pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway. Probab=89.24 E-value=1.6 Score=22.48 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=40.2 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------CCCCCC----------------HHHHCCCCEEEECCCCHH Q ss_conf 9997588678999999986299728999965300------786006----------------677479989999389837 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------HNLRYR----------------EDLLNAADVSILCLPDVA 61 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------ag~~~~----------------~~~~~~~Divf~a~p~~~ 61 (311) |+|+|| |.+|.-+-..|.+. ..++.+++..++ .|.++. ......+|++|.|+-.-. T Consensus 1 I~IiGa-GaiG~~~a~~L~~a-g~~V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~ 78 (150) T pfam02558 1 IAILGA-GAVGSLYGARLARA-GHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAVKAYQ 78 (150) T ss_pred CEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEECCCC T ss_conf 999966-89999999999977-9928999756367887749769994798389807410386576588679999722458 Q ss_pred HHHHHHHHH Q ss_conf 899999986 Q gi|254780294|r 62 SLEIIQLIK 70 (311) Q Consensus 62 s~~~~~~~~ 70 (311) ..+..+.+. T Consensus 79 ~~~al~~l~ 87 (150) T pfam02558 79 TAEALEDLA 87 (150) T ss_pred HHHHHHHHH T ss_conf 899999988 No 236 >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p; InterPro: IPR006285 This is a family of eukaryotic proteins found in animals, plants, and yeasts that includes Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. . Probab=89.21 E-value=1.6 Score=22.47 Aligned_cols=128 Identities=15% Similarity=0.183 Sum_probs=78.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC-C-------------------CCC--------------------- Q ss_conf 07999758867899999998629972899996530-0-------------------786--------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE-R-------------------HNL--------------------- 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~-~-------------------ag~--------------------- 40 (311) .||-|+|| |.-|-..-|.|-.-=..+|+++.-.. + ++| T Consensus 349 ~KvLlLGA-GTLGc~vaR~L~GwGvRhItFvDngkVs~sNPVRQsL~nFeDcl~gG~~KAetA~kalk~IFP~i~~~g~~ 427 (689) T TIGR01381 349 VKVLLLGA-GTLGCQVARVLLGWGVRHITFVDNGKVSYSNPVRQSLYNFEDCLEGGEGKAETAAKALKRIFPAIEASGYR 427 (689) T ss_pred CCEEEECC-CHHHHHHHHHHHCCCCEEEEEEECCEEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHCHHHHCCCEE T ss_conf 23123426-33456898887426621578864574540277468764336451378623899999998625002015317 Q ss_pred --------CCC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHH------H----- Q ss_conf --------006--------------6774799899993898378999999861258489822763035------5----- Q gi|254780294|r 41 --------RYR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHR------I----- 87 (311) Q Consensus 41 --------~~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R------~----- 87 (311) .++ ....++.|+||++++.-.|+ |.|....+..++.-|..+--|. + T Consensus 428 l~vPMpGHpi~~~~~~~~~~D~~rL~~Lik~HDvVFLl~DsRE~R-WLPtvLc~~~~KIaI~aAlGFDsY~v~RHG~gs~ 506 (689) T TIGR01381 428 LEVPMPGHPIDEKDVDELLEDIKRLEELIKEHDVVFLLLDSREAR-WLPTVLCARFDKIAISAALGFDSYLVMRHGAGSR 506 (689) T ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEEECCCEEEEEECCCCCC T ss_conf 861688888872212668999999999865005355301365002-2378997537944888742336057776278886 Q ss_pred ----------H-HHHHH-----------CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH Q ss_conf ----------5-43110-----------021000477652049607725842113311247888885 Q gi|254780294|r 88 ----------A-PGWVY-----------GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKA 132 (311) Q Consensus 88 ----------~-~~vpl-----------~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~ 132 (311) | ..+|+ +-|. |.--=..+..+.-||-||...++..+|.--|... T Consensus 507 ~~~~~d~~~~di~k~~~~rLgCYFCnDv~AP~-dSttDRTLDQ~CTVtRPG~a~iAs~lAvELlvsv 572 (689) T TIGR01381 507 SEEVSDVEESDISKVNYSRLGCYFCNDVVAPK-DSTTDRTLDQQCTVTRPGVALIASALAVELLVSV 572 (689) T ss_pred CCCHHHHHHCCCCCCCCCCCCEEECCCEECCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 53023354423222665434313036503687-8863554445543346646788999999998766 No 237 >PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional Probab=89.14 E-value=0.55 Score=25.33 Aligned_cols=37 Identities=14% Similarity=0.251 Sum_probs=29.9 Q ss_pred CCE--EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 907--999758867-8999999986299728999965300 Q gi|254780294|r 1 MYK--IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 1 M~k--VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |.| |||=||+|. -|.+|++.|.+.+.+|++++.|+.- T Consensus 1 MkrIvvgITGASGa~ya~rll~~L~~~~~~ev~lv~S~~A 40 (187) T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVEEVETHLVISQAA 40 (187) T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHCCCCEEEEEECHHH T ss_conf 9739999852888999999999986428956999988689 No 238 >PRK08306 dipicolinate synthase subunit A; Reviewed Probab=88.88 E-value=1.6 Score=22.54 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=38.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--ECCCC--CCC---CCCHHHHCCCCEEEECCCC Q ss_conf 0799975886789999999862997289999--65300--786---0066774799899993898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--PCEER--HNL---RYREDLLNAADVSILCLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--~s~~~--ag~---~~~~~~~~~~Divf~a~p~ 59 (311) ++|+|+|. -.--.++++.|.+. ..++..+ ...+. .|. +..++.++++|++++=.|. T Consensus 3 ~~iaviGG-D~Rq~~l~~~L~~~-g~~V~~~gf~~~~~~~~~~~~~~~~~~~~~~~d~iIlPvpg 65 (296) T PRK08306 3 MHIAVIGG-DARQLELIRKLVEL-GAKVSLVGFDQLDHGFTGVAKCSSLEEALSDVDVIILPVPG 65 (296) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCCCCEEEECCHHHHHHCCCEEEECCCC T ss_conf 48999787-58999999999977-99799983576555667617734678887239999978832 No 239 >PRK13243 glyoxylate reductase; Reviewed Probab=88.72 E-value=1.2 Score=23.22 Aligned_cols=72 Identities=11% Similarity=0.081 Sum_probs=44.1 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 79997588678999999986299728999965300786006677479989999389837899999986125848982276 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) ||-|.+ -+-.+-+++|.+| +++..........+.--.+...++|.++......+.+++..++. +.++|... T Consensus 4 Kvlvt~---~i~~~~~~~L~~~--~~v~~~~~~~~~~~~~l~~~i~~~d~li~~~~~~i~~~~l~~ap----~LK~I~~~ 74 (333) T PRK13243 4 RVFITR---EIPENGIEMLEEH--FEVEVWEDEREIPREVLLEKVKDVDALVTMLSERIDAEVFEAAP----RLRIVANY 74 (333) T ss_pred EEEEEC---CCCHHHHHHHHHC--CCEEEECCCCCCCHHHHHHHHCCCCEEEECCCCCCCHHHHHCCC----CCEEEEEC T ss_conf 899969---8899999999717--95999269999999999998679829998588858899994699----98099885 Q ss_pred C Q ss_conf 3 Q gi|254780294|r 83 T 83 (311) Q Consensus 83 s 83 (311) + T Consensus 75 g 75 (333) T PRK13243 75 A 75 (333) T ss_pred C T ss_conf 7 No 240 >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=88.66 E-value=1.4 Score=22.79 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=42.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C Q ss_conf 07999758867899999998629972899996530078600--------------------------------------6 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~ 43 (311) .||||||+ |=.|..--..|... -.+++.+-.....|--+ + T Consensus 311 kKVAVIGs-GPAGLaaA~~Lar~-G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGkDit 388 (639) T PRK12809 311 EKVAVIGA-GPAGLGCADILARA-GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDIT 388 (639) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECCCCC T ss_conf 98999897-58999999999975-99069993688889868535874527778999999999864988991967798688 Q ss_pred -HHHHCCCCEEEECCCCHHHHH Q ss_conf -677479989999389837899 Q gi|254780294|r 44 -EDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 44 -~~~~~~~Divf~a~p~~~s~~ 64 (311) +++.+++|.||++++...++. T Consensus 389 ~~eL~~~yDAVflg~Ga~~~~~ 410 (639) T PRK12809 389 FSDLTSEYDAVFIGVGTYGMMR 410 (639) T ss_pred HHHHHHHCCEEEEEECCCCCCC T ss_conf 9999731798999736788854 No 241 >PRK07201 short chain dehydrogenase; Provisional Probab=88.62 E-value=0.81 Score=24.27 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=29.3 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 79997588678999999986299728999965300 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |+-+-||||+.|..|++.|.+++..++..+--.++ T Consensus 2 nyflTGaTGFLG~~LL~~LL~~~~a~V~cLVR~~s 36 (663) T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRPGARVHVLVRRQS 36 (663) T ss_pred CEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCC T ss_conf 36540684288999999998489998999978774 No 242 >PRK08268 3-hydroxybutyryl-CoA dehydrogenase; Validated Probab=88.49 E-value=1.8 Score=22.16 Aligned_cols=86 Identities=10% Similarity=0.146 Sum_probs=56.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC-----------------CCC----------------HHHH Q ss_conf 9079997588678999999986299728999965300786-----------------006----------------6774 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL-----------------RYR----------------EDLL 47 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~-----------------~~~----------------~~~~ 47 (311) ..||||||| |.-|+-+-..+..+ -++++++..+..+-. ++. -+.+ T Consensus 3 i~~VaViGa-GtMG~gIA~~~a~a-G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~g~~~~~~~~~~~~ri~~~~~l~~l 80 (503) T PRK08268 3 IATVAVIGA-GAMGAGIAQVAAQA-GHTVLLYDARAGAAAAARDGIAATLAKLVEKGKLTAEQAEAALARLRPVEALADL 80 (503) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCEEECCHHHH T ss_conf 678999796-88999999999938-9908999799899999999999999999976999988999998474741778897 Q ss_pred CCCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHH Q ss_conf 79989999389837899--9999861-25848982276303555 Q gi|254780294|r 48 NAADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIA 88 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~ 88 (311) .++|+|+=|.|....-+ ....+-+ ...++.+-+|+|....+ T Consensus 81 ~~aDlVIEAV~E~l~~K~~vf~~l~~~~~~~~IlASNTSsL~it 124 (503) T PRK08268 81 ADCDLVVEAIVERLDVKQALFAQLEAIVSDDCILATNTSSLSIT 124 (503) T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHH T ss_conf 57999999360678999999999985479885798417767799 No 243 >PRK10637 cysG siroheme synthase; Provisional Probab=88.48 E-value=1.8 Score=22.16 Aligned_cols=78 Identities=14% Similarity=0.129 Sum_probs=56.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC--------C------CCCCCHHHHCCCCEEEECCCCH-HHHHHH Q ss_conf 079997588678999999986299728999965300--------7------8600667747998999938983-789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER--------H------NLRYREDLLNAADVSILCLPDV-ASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~--------a------g~~~~~~~~~~~Divf~a~p~~-~s~~~~ 66 (311) .+|-|||+ |-|+.+=+++|.+.. .+++.++-+-. . .+.+.+.++.++++||.|+++. +.+... T Consensus 13 k~vLVVGG-G~vA~rK~~~Ll~ag-A~VtViap~~~~~l~~l~~~g~i~~~~r~f~~~dL~g~~LViaATdd~~vn~~i~ 90 (457) T PRK10637 13 RDCLIVGG-GDVAERKARLLLDAG-ARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRVS 90 (457) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CEEEEECCCCCHHHHHHHHCCCEEEEECCCCHHHHCCCEEEEEECCCHHHHHHHH T ss_conf 86999899-899999999998789-8799989989989999986698289967899688389519999069999999999 Q ss_pred HHHHHCCCCEEEECC Q ss_conf 998612584898227 Q gi|254780294|r 67 QLIKKNGINSRIIDT 81 (311) Q Consensus 67 ~~~~~~g~~~~vid~ 81 (311) ..+.+.|.-+-|.|. T Consensus 91 ~~a~~~~ilVNvvD~ 105 (457) T PRK10637 91 EAAEARRIFCNVVDA 105 (457) T ss_pred HHHHHCCCEEEECCC T ss_conf 999982986884588 No 244 >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed Probab=88.38 E-value=1.6 Score=22.39 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=27.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) +||||||+ |=.|..--..|... -.+++.+-.....|- T Consensus 328 KkVAIIGs-GPAGLsaA~~Lar~-G~~VTVFE~~~~~GG 364 (654) T PRK12769 328 KRVAIIGA-GPAGLACADVLTRN-GVAVTVYDRHPEIGG 364 (654) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCC T ss_conf 98999897-78999999999976-975799525777886 No 245 >PRK00257 erythronate-4-phosphate dehydrogenase; Validated Probab=88.16 E-value=1.6 Score=22.41 Aligned_cols=27 Identities=7% Similarity=0.079 Sum_probs=12.8 Q ss_pred CCCCCHHHHCCCCEEEECCCCHHHHHH Q ss_conf 860066774799899993898378999 Q gi|254780294|r 39 NLRYREDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 39 g~~~~~~~~~~~Divf~a~p~~~s~~~ 65 (311) |+.+..+...++|+.+-=.-..+.++. T Consensus 27 gr~i~~~~l~daD~LiVRS~T~V~~~L 53 (379) T PRK00257 27 GRDFDRAAVRDADALLVRSVTRVDRAL 53 (379) T ss_pred CCCCCHHHHCCCCEEEEECCCCCCHHH T ss_conf 997998890778899995687448999 No 246 >pfam02423 OCD_Mu_crystall Ornithine cyclodeaminase/mu-crystallin family. This family contains the bacterial Ornithine cyclodeaminase enzyme EC:4.3.1.12, which catalyses the deamination of ornithine to proline. This family also contains mu-Crystallin the major component of the eye lens in several Australian marsupials, mRNA for this protein has also been found in human retina. Probab=88.06 E-value=1.3 Score=23.05 Aligned_cols=14 Identities=14% Similarity=0.223 Sum_probs=6.1 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 13689999999987 Q gi|254780294|r 294 KGASGAAIQNMDLL 307 (311) Q Consensus 294 KGAAgnAVQn~nlm 307 (311) -|-|.|=+-.+.+. T Consensus 292 ~G~a~~Dla~a~~v 305 (312) T pfam02423 292 TGFAVEDVAAARLV 305 (312) T ss_pred CCHHHHHHHHHHHH T ss_conf 88699999999999 No 247 >PRK12480 D-lactate dehydrogenase; Provisional Probab=87.43 E-value=2.1 Score=21.76 Aligned_cols=78 Identities=14% Similarity=0.020 Sum_probs=52.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861258489822 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) |.||.+-+..-+==.-+.+. .++..+|+......-+ .. .-+..+++|.+..-.-..+.++...++.+.| .++|. T Consensus 1 m~Ki~~~~~~~~e~~~~~~~-~~~~~~e~~~~~~~~~--~~-~~~~~~~~d~v~~~~~~~i~~evl~~l~~~~--LK~I~ 74 (330) T PRK12480 1 MTKIMFFGTRDYEKEMALNW-GKKNNVEVTTSKELLS--SA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYG--IKQIA 74 (330) T ss_pred CCEEEEEECCHHHHHHHHHH-HHHCCEEEEEECCCCC--HH-HHHHHCCCCEEEEEECCCCCHHHHHHHHHCC--CEEEE T ss_conf 96699983768669999998-8774906999569899--89-9998479998999607978999999655679--75999 Q ss_pred CCCC Q ss_conf 7630 Q gi|254780294|r 81 TSTA 84 (311) Q Consensus 81 ~ss~ 84 (311) ..+. T Consensus 75 ~~gv 78 (330) T PRK12480 75 QRTA 78 (330) T ss_pred ECCE T ss_conf 8772 No 248 >cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Probab=87.19 E-value=1.7 Score=22.37 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=45.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEEECCCCCCC----C--C----------------CHHHHCCCCEE Q ss_conf 07999758867899999998629------9728999965300786----0--0----------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSIPCEERHNL----R--Y----------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l~s~~~ag~----~--~----------------~~~~~~~~Div 53 (311) ++|+|.||+|.+-=.|+-+|.+- ..+.|+++.......+ . + -++.|.++|++ T Consensus 124 l~V~VTgAag~iaYsLi~~lasGevFG~d~~i~L~LlDip~~~e~L~Gv~MELeDcAfPlL~~v~~t~d~~~AF~dad~a 203 (452) T cd05295 124 LQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHVI 203 (452) T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHCHHHHHHHHCCCCCCCEEEECCHHHHHCCCCEE T ss_conf 46999468447689999997376734898717999547740778863633567653440017106767999985579889 Q ss_pred EE--CCCCHHHHHH Q ss_conf 99--3898378999 Q gi|254780294|r 54 IL--CLPDVASLEI 65 (311) Q Consensus 54 f~--a~p~~~s~~~ 65 (311) |+ +-|-...++- T Consensus 204 ilvga~pr~~gmer 217 (452) T cd05295 204 VLLDDFLIKEGEDL 217 (452) T ss_pred EEECCCCCCCCCCH T ss_conf 99588478888718 No 249 >PRK06847 hypothetical protein; Provisional Probab=87.06 E-value=1.2 Score=23.33 Aligned_cols=32 Identities=16% Similarity=0.285 Sum_probs=26.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9079997588678999999986299728999965 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |.||.|||| |.+|..+=-.|.++ .++++.+-. T Consensus 4 ~kkV~IVGa-G~aGL~lA~~L~~~-Gi~v~V~E~ 35 (375) T PRK06847 4 VKKVLIVGG-GIGGMSAAIALRKA-GISVDLVEI 35 (375) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 987999996-68999999999967-999999908 No 250 >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] Probab=86.88 E-value=1.3 Score=23.06 Aligned_cols=43 Identities=16% Similarity=0.364 Sum_probs=29.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEE--EEEEECCCC--CCCCCCH Q ss_conf 9079997588678999999986299728--999965300--7860066 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC--LLSIPCEER--HNLRYRE 44 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~--l~~l~s~~~--ag~~~~~ 44 (311) |++|||||. |+.|-.+..-|.++|..+ +..+--+.. .|..|+. T Consensus 1 ~~~VAIIGg-G~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~ 47 (474) T COG4529 1 MFKVAIIGG-GFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYST 47 (474) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCC T ss_conf 951899788-65799999999847887775678535554578755788 No 251 >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] Probab=86.81 E-value=1.4 Score=22.73 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=6.6 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 136899999999872 Q gi|254780294|r 294 KGASGAAIQNMDLLL 308 (311) Q Consensus 294 KGAAgnAVQn~nlm~ 308 (311) -|-|.+=+..+++++ T Consensus 301 vG~aieD~a~a~~vy 315 (330) T COG2423 301 VGLALEDVAAAKLVY 315 (330) T ss_pred CCCCHHHHHHHHHHH T ss_conf 783089999999999 No 252 >cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. Probab=86.73 E-value=2.3 Score=21.52 Aligned_cols=82 Identities=13% Similarity=0.133 Sum_probs=48.9 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC--------------CCCCCCC------------------------CC- Q ss_conf 79997588678999999986299728999965--------------3007860------------------------06- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC--------------EERHNLR------------------------YR- 43 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s--------------~~~ag~~------------------------~~- 43 (311) ||+|+|+ |-.|......|..-=.-+|+++.. .+..|+. +. T Consensus 1 kV~IvG~-GGLG~~~a~~La~aGvg~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~i~i~~~~~~l~~ 79 (174) T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174) T ss_pred CEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHCCHHHHHHCCCHHHHHHHHHHHHHCCCCEEEEEECCCCH T ss_conf 9899876-788999999999818973999989946664430132477747974999999999987979889999144499 Q ss_pred ---HHHHCCCCEEEECCCCHHHHHHH-HHHHH-CCCCEEEECCCCCHHHH Q ss_conf ---67747998999938983789999-99861-25848982276303555 Q gi|254780294|r 44 ---EDLLNAADVSILCLPDVASLEII-QLIKK-NGINSRIIDTSTAHRIA 88 (311) Q Consensus 44 ---~~~~~~~Divf~a~p~~~s~~~~-~~~~~-~g~~~~vid~ss~~R~~ 88 (311) ++.++++|+++=|+++-.++.+. ..+.. .+ ..++..| ..++. T Consensus 80 ~n~~~l~~~~D~ViD~~Dn~~tr~~l~~~~~~~~~--~plv~as-~~~~~ 126 (174) T cd01487 80 NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKN--KPVVCAS-GMAGF 126 (174) T ss_pred HHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEE-EECCC T ss_conf 99999983799999999998999999999999879--9599997-45108 No 253 >PRK11697 putative two-component response-regulatory protein YehT; Provisional Probab=86.49 E-value=2.3 Score=21.44 Aligned_cols=84 Identities=13% Similarity=0.154 Sum_probs=54.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCC-CCEE Q ss_conf 90799975886789999999862997289999653007860066774799899993--89837899999986125-8489 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNG-INSR 77 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g-~~~~ 77 (311) |+||+|+=---..-+.|.++|+++|.+++..-+++.. ..+....-...|++|+- +|.--..+.+..+.... ..+. T Consensus 1 M~ki~I~DDe~~~~~~l~~~l~~~~~i~~~~~~~~~~--eal~~~~~~~~DllfLDI~m~~~~G~ela~~l~~~~~~~iI 78 (239) T PRK11697 1 MIKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAI--EALGAIHRLKPDVVFLDIQMPRISGLELVGMLDPEHMPYIV 78 (239) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHH--HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHCCCCCCEEE T ss_conf 9499999699999999999997587989999989999--99999985399999983998695999999983733498699 Q ss_pred EECCCCCHH Q ss_conf 822763035 Q gi|254780294|r 78 IIDTSTAHR 86 (311) Q Consensus 78 vid~ss~~R 86 (311) .+..+..|- T Consensus 79 FvT~~~e~a 87 (239) T PRK11697 79 FVTAFDEYA 87 (239) T ss_pred EEECCHHHH T ss_conf 995868999 No 254 >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Probab=86.25 E-value=2.4 Score=21.36 Aligned_cols=124 Identities=15% Similarity=0.061 Sum_probs=66.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC---C--------------------- Q ss_conf 07999758867899999998629972899---------------99653007860---0--------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR---Y--------------------- 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~---~--------------------- 42 (311) .+|.|||| |-.|......|..--.-+|. .+..++..|+. . T Consensus 25 a~VlVvGa-GGLGs~~a~~La~aGVG~i~ivD~D~Ve~SNL~RQ~L~~e~Dig~~~pKa~aA~~~L~~iNp~v~I~~~~~ 103 (339) T PRK07688 25 KHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSEVRVEAIVQ 103 (339) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEC T ss_conf 97899877-77779999999984898299980999246678865065621332263779999999983499860587600 Q ss_pred --C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf --6----6774799899993898378999999861258489822763035554311002100047765204960772584 Q gi|254780294|r 43 --R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 43 --~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) . ++.++++|+++=|+++-.++-+...+.-+-. +.+|. +++.+++..+--.+|.-.+-.+-..+... ....+ T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~-~PlV~-ga~~g~~G~~~~~~p~~~pC~rCl~p~~p-~~~~t 180 (339) T PRK07688 104 DVTAEELEELVTNVDVIIDATDNFETRFIVNDAAQKYS-IPWIY-GACVGSYGLSYTIIPGKTPCLSCLLQSIP-LGGAT 180 (339) T ss_pred CCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EEEECCEEEEEECCCCCCCCCCCCCCCCC-CCCCC T ss_conf 39989999998518899987889999999999999959-99899-98844688999538999970541689999-88998 Q ss_pred CCCCCCHHHHHHH Q ss_conf 2113311247888 Q gi|254780294|r 117 CYATGAIAILRPL 129 (311) Q Consensus 117 C~~t~~~laL~PL 129 (311) |.+...+-++..+ T Consensus 181 C~~~GVlgp~vgi 193 (339) T PRK07688 181 CDTAGIISPAVQL 193 (339) T ss_pred CCCCCCCCCHHHH T ss_conf 4236636450789 No 255 >PRK12810 gltD glutamate synthase subunit beta; Reviewed Probab=86.25 E-value=2.4 Score=21.36 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=26.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) +||||||| |=.|..--..|... -.+++.+-.....|- T Consensus 144 kkVAVIGs-GPAGLsaA~~Lar~-G~~VtVfE~~~~~GG 180 (472) T PRK12810 144 KKVAVVGS-GPAGLAAADQLARA-GHKVTVFERDDRIGG 180 (472) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCC T ss_conf 98999897-78999999999866-975899725777775 No 256 >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed Probab=86.25 E-value=1.9 Score=22.01 Aligned_cols=16 Identities=19% Similarity=0.329 Sum_probs=10.9 Q ss_pred ECCCCCCCCCCCHHCC Q ss_conf 1233335610000001 Q gi|254780294|r 146 VSGYTGGGKKLISRME 161 (311) Q Consensus 146 ~sg~sgaG~~~~~~~~ 161 (311) +-|+||++++..-.+. T Consensus 127 IlGaGGaarai~~al~ 142 (275) T PRK00258 127 LLGAGGAARAVILPLL 142 (275) T ss_pred EECCCCHHHHHHHHHH T ss_conf 9888710799999999 No 257 >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=86.23 E-value=2.4 Score=21.36 Aligned_cols=82 Identities=11% Similarity=0.201 Sum_probs=52.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC------------CCCCC-----CHHHHCCCCEEEECCCCHHHHH Q ss_conf 079997588678999999986299728999965300------------78600-----6677479989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER------------HNLRY-----REDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~------------ag~~~-----~~~~~~~~Divf~a~p~~~s~~ 64 (311) +||+|+|. |..|....++|.++ ..++........ .|.++ .+..+.++|+++.+-+=..... T Consensus 15 k~v~V~Gl-G~sG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~d~vV~SPGI~~~~p 92 (481) T PRK01438 15 LRVVVAGL-GVSGFPAADALHEL-GASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLPEGTELVVTSPGWRPTHP 92 (481) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHCCCCEEEECCCCCCCCH T ss_conf 98999957-58899999999967-99899997998744868999888549889968875666248999998997899899 Q ss_pred HHHHHHHCCCCEEEE-CCCCCHHH Q ss_conf 999986125848982-27630355 Q gi|254780294|r 65 IIQLIKKNGINSRII-DTSTAHRI 87 (311) Q Consensus 65 ~~~~~~~~g~~~~vi-d~ss~~R~ 87 (311) ....+.++|.. |+ |.--+||+ T Consensus 93 ~~~~a~~~gi~--i~~eiel~~~~ 114 (481) T PRK01438 93 LLAAAAEAGIP--VWGDVELAWRL 114 (481) T ss_pred HHHHHHHCCCC--EECHHHHHHHH T ss_conf 99999986993--86189999987 No 258 >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional Probab=86.12 E-value=2.1 Score=21.78 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=40.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC--------------------------------------C Q ss_conf 07999758867899999998629972899996530078600--------------------------------------6 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY--------------------------------------R 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~--------------------------------------~ 43 (311) +||||||| |=.|..--..|... -.+++.+-.....|--+ + T Consensus 194 KkVAIIGa-GPAGLsaAy~L~~~-Gh~VTVfE~~~~~GGmlryGIP~yRLPk~vld~EI~~i~~~GV~~~~n~~vG~dit 271 (652) T PRK12814 194 KKVAIIGA-GPAGLTAAYYLLRK-GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT 271 (652) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCC T ss_conf 97999683-78999999999977-99069981588889867644863338999999999999971985886679477477 Q ss_pred -HHHHCCCCEEEECCCCHHHHH Q ss_conf -677479989999389837899 Q gi|254780294|r 44 -EDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 44 -~~~~~~~Divf~a~p~~~s~~ 64 (311) ++..+++|.||+|.+...++. T Consensus 272 l~~L~~~yDAVflaiGa~~~r~ 293 (652) T PRK12814 272 LEELQKEFDAVLLAVGAQKASK 293 (652) T ss_pred HHHHHHHCCEEEEEECCCCCCC T ss_conf 9999865899999755787744 No 259 >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann Probab=86.03 E-value=1.8 Score=22.10 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=40.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC---------------CHHHHCCCCEEEECCCCHH Q ss_conf 07999758867899999998629972899996530078600---------------6677479989999389837 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY---------------REDLLNAADVSILCLPDVA 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~---------------~~~~~~~~Divf~a~p~~~ 61 (311) .+|.|+|+ |=+++..+.-|.+...-+|+.+..+.....++ ......++|+++.|+|-+. T Consensus 20 k~vlIlGa-GGaarai~~aL~~~g~~~I~i~nR~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~tp~G~ 93 (155) T cd01065 20 KKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM 93 (155) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEECCHHHHHCCCCEEEECCCCCC T ss_conf 99999867-589999999999719982288608999999999985013664010453443156887987677877 No 260 >pfam07993 NAD_binding_4 Male sterility protein. This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Probab=85.96 E-value=0.99 Score=23.75 Aligned_cols=30 Identities=10% Similarity=0.304 Sum_probs=23.6 Q ss_pred EECCCCHHHHHHHHHHHCC-CCEEEEEEECC Q ss_conf 9758867899999998629-97289999653 Q gi|254780294|r 6 IDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE 35 (311) Q Consensus 6 IvGATG~vG~~li~lL~~h-p~~~l~~l~s~ 35 (311) |=||||++|..|++.|.+. +..++..|.-. T Consensus 1 vTGaTGFlG~~ll~~Ll~~~~~~~V~~LvR~ 31 (245) T pfam07993 1 LTGATGFLGKVLLEKLLRSCPEVKIYCLVRA 31 (245) T ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEEECC T ss_conf 9384359999999999957999789999678 No 261 >PRK13508 tagatose-6-phosphate kinase; Provisional Probab=85.68 E-value=2.6 Score=21.18 Aligned_cols=101 Identities=19% Similarity=0.171 Sum_probs=55.7 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC----------------CCCCCCH-----------HHHCCCCEEEEC Q ss_conf 9997588678999999986299728999965300----------------7860066-----------774799899993 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER----------------HNLRYRE-----------DLLNAADVSILC 56 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~----------------ag~~~~~-----------~~~~~~Divf~a 56 (311) ++.+| |+.|+.+.+.|.+.=..+...+..+.+ .|-.+.+ +.+.+.|+++++ T Consensus 56 ~g~~G--g~~G~~i~~~L~~~i~~~~v~i~g~tR~~i~i~~~~~~t~i~~~Gp~i~~~~~~~ll~~~~~~~~~~d~vvis 133 (309) T PRK13508 56 TGFIG--GELGQFIAEHLDDSIKHAFYKIKGETRNCIAILHEGQQTEILEKGPEIDVQEADGFLHHFKQLLEKVEVVAIS 133 (309) T ss_pred EEECC--CCCHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 99638--9747999999986997469985799725799994796799956799999999999999999870559999996 Q ss_pred --CCCHHHHH----HHHHHHHCCCCEEEECCCCCHHHHHH----HHHCCCCCCHHHHHHCCC Q ss_conf --89837899----99998612584898227630355543----110021000477652049 Q gi|254780294|r 57 --LPDVASLE----IIQLIKKNGINSRIIDTSTAHRIAPG----WVYGFPEMDKSQKEKIRS 108 (311) Q Consensus 57 --~p~~~s~~----~~~~~~~~g~~~~vid~ss~~R~~~~----vpl~vPEvN~~~~~~~~~ 108 (311) +|.++..+ ++..+.+.|. .+++|.|++.-...- -|.++= -|.+.++.+-+ T Consensus 134 GSlP~g~~~~~y~~li~~~~~~g~-~vilD~sg~~L~~~l~~~~~P~lIK-PN~~El~~l~G 193 (309) T PRK13508 134 GSLPAGLPQDYYAQLIELANNKGK-KVVLDCSGAALQAVLKSPYKPTVIK-PNIEELSQLLG 193 (309) T ss_pred CCCCCCCCHHHHHHHHHHHHHCCC-EEEEECCHHHHHHHHHCCCCCCEEC-CCHHHHHHHHC T ss_conf 888999985999999999985599-8999897699999984657772774-59899999839 No 262 >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent; InterPro: IPR010097 This entry represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exist in eukaryotes. In Saccharomyces cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities.; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process. Probab=85.60 E-value=2.5 Score=21.29 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=21.4 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEE Q ss_conf 7999758867899999998629-9728 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-KDLC 28 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-p~~~ 28 (311) |||||||.|=+||=|==||-.- |+.. T Consensus 1 KVAVLGA~GGIGQpLSLLLK~~Lp~~s 27 (379) T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQLPQVS 27 (379) T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEE T ss_conf 968985586421468999985176457 No 263 >KOG1431 consensus Probab=85.60 E-value=1.5 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=27.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-C-CEEEEEEECC Q ss_conf 907999758867899999998629-9-7289999653 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-K-DLCLLSIPCE 35 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p-~~~l~~l~s~ 35 (311) |.||-+-|.||+||..+.+.+++- + .-+..+..|+ T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315) T KOG1431 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315) T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEEECCC T ss_conf 9559993687417899999998538887656995155 No 264 >pfam10100 DUF2338 Uncharacterized protein conserved in bacteria (DUF2338). Members of this family of hypothetical bacterial proteins have no known function. Probab=85.54 E-value=2.6 Score=21.14 Aligned_cols=128 Identities=14% Similarity=0.120 Sum_probs=69.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC-----------------------------------HH Q ss_conf 9079997588678999999986299728999965300786006-----------------------------------67 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR-----------------------------------ED 45 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~-----------------------------------~~ 45 (311) |.||-|+|. |-|+-.|--.|..|-.-.+-...-.+-.++++- ++ T Consensus 1 ~~~vLi~Gt-GPvaIQLAv~~~~~~~~~vgi~~R~S~rs~~f~e~l~~~~~~~~~~vqn~~h~~~~G~~~id~~~~~~~~ 79 (429) T pfam10100 1 MSKVLILGT-GPVAIQLAVDLKLHGDARLGIAGRPSTRSKRLFEALARTDTLFLVGTQNEQHQQLEGKCTIDCFIKDYAT 79 (429) T ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCEEHHHHHCCHHH T ss_conf 973699637-7799999999985237455453275355799999997377679861022456764471562454137988 Q ss_pred HHCCCCEEEECCCCHHHHHH---------------------------HHH-HHHCCCCEEEECCCCCHH---HHH-HHHH Q ss_conf 74799899993898378999---------------------------999-861258489822763035---554-3110 Q gi|254780294|r 46 LLNAADVSILCLPDVASLEI---------------------------IQL-IKKNGINSRIIDTSTAHR---IAP-GWVY 93 (311) Q Consensus 46 ~~~~~Divf~a~p~~~s~~~---------------------------~~~-~~~~g~~~~vid~ss~~R---~~~-~vpl 93 (311) ...+-|.+++|.|.+.=... +.. +.+.|.++-||+.|+.|- +-+ .-|+ T Consensus 80 i~g~WdtlILavtaDaY~~VL~qi~~~~L~~vk~iILvSPt~GS~~lv~~~l~~~~~~~eVISfStY~gdTr~~d~~~~~ 159 (429) T pfam10100 80 IVGDWDTLILAVTADAYYDVLQQIPWETLKRVKCVILISPTFGSNLLVQNFLNALNKDAEVISFSTYYGDTRWIDDEQPN 159 (429) T ss_pred HCCCCCEEEEEEEHHHHHHHHHCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEECCCCCC T ss_conf 51513379999521878999970799887047779997666440799999998559981699853003643100678873 Q ss_pred CCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 0210004776520496077258421133112478888850345 Q gi|254780294|r 94 GFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLP 136 (311) Q Consensus 94 ~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~ 136 (311) -| .-...++.-++++++|.++ .+.-|.-+++..+|. T Consensus 160 ~v------lTtavKkkiYlgSt~~~S~-~~~~l~~~~~~~~I~ 195 (429) T pfam10100 160 RV------LTTAVKKKLYLGSTHSGSA-ELSRLCAVFAQLGIE 195 (429) T ss_pred HH------HHHHHHCEEEECCCCCCCH-HHHHHHHHHHHCCCE T ss_conf 57------8876422078547999967-899999999875930 No 265 >PRK11883 protoporphyrinogen oxidase; Reviewed Probab=85.42 E-value=2.6 Score=21.11 Aligned_cols=80 Identities=18% Similarity=0.254 Sum_probs=48.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH---HHHHHHHHHHCCCCEE Q ss_conf 07999758867899999998629-9728999965300786006677479989999389837---8999999861258489 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA---SLEIIQLIKKNGINSR 77 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~---s~~~~~~~~~~g~~~~ 77 (311) +||+|||| |..|...=-.|.++ |..+++.+=++...|-++......+ +.|=.-|+.. .......+.+.|..-. T Consensus 1 K~V~VIGa-GiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~t~~~~g--~~~e~Gp~~~~~~~~~~~~l~~~lGL~~~ 77 (452) T PRK11883 1 KRVAIIGG-GISGLTAAYRLHKKGPDADITLLEASDRLGGKIQTVRKDG--FPIDLGPESFLARKPSAPALIKELGLEDE 77 (452) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEEEEECC--EEEECCCCCCEECCHHHHHHHHHCCCCCE T ss_conf 95999998-7899999999996497997899988998810388983699--99968888022378679999998599634 Q ss_pred EECCCCC Q ss_conf 8227630 Q gi|254780294|r 78 IIDTSTA 84 (311) Q Consensus 78 vid~ss~ 84 (311) .++.+.. T Consensus 78 ~i~~~~~ 84 (452) T PRK11883 78 LVSNTAG 84 (452) T ss_pred EECCCCC T ss_conf 5057888 No 266 >PRK13512 coenzyme A disulfide reductase; Provisional Probab=85.33 E-value=1.5 Score=22.56 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=30.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC Q ss_conf 907999758867899999998629-9728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ 37 (311) |.||-|||+ |..|....+-|.++ |..+++.+..++. T Consensus 1 M~kiVIIG~-g~AG~~aA~~lrk~~~~~eItvi~~e~~ 37 (438) T PRK13512 1 MPKIVVVGA-VAGGATCASQIRRLDKESDIIIFEKDRD 37 (438) T ss_pred CCEEEEECC-CHHHHHHHHHHHHHCCCCCEEEEECCCC T ss_conf 980999898-4999999999994391999999968998 No 267 >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional Probab=85.29 E-value=2.3 Score=21.51 Aligned_cols=17 Identities=18% Similarity=0.026 Sum_probs=8.0 Q ss_pred CCCCEEEECCCCHHHHH Q ss_conf 79989999389837899 Q gi|254780294|r 48 NAADVSILCLPDVASLE 64 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~ 64 (311) -++..-.+.+|..++.+ T Consensus 61 ~Gi~~~~~~l~~~~s~~ 77 (288) T PRK10792 61 VGFVSRSYDLPETTSEA 77 (288) T ss_pred CCCEEEEEECCCCCCHH T ss_conf 59979998668899999 No 268 >PRK06932 glycerate dehydrogenase; Provisional Probab=85.22 E-value=2.7 Score=21.05 Aligned_cols=73 Identities=16% Similarity=0.040 Sum_probs=35.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861258489822 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) |.||.++-+..+.+.- .+....-..+....... + ...+ -+...++|+++. .....+++...++.. .++|. T Consensus 1 ~mkiv~ld~~~~~~~~--~~~~~~~~~~~~~~~~t-~-~eel-~e~i~dad~ii~-~~~~i~~~vl~~ap~----LK~I~ 70 (314) T PRK06932 1 MMKIVFLDSTAIPKHI--SIPRPSFEHEWTEYDHT-S-ADQT-IERAKDADIVIT-SKVIFSRETLQQLPK----LKLIA 70 (314) T ss_pred CCEEEEEECCCCCCCC--CCCCCCCCCEEEECCCC-C-HHHH-HHHHCCCCEEEE-CCCCCCHHHHHCCCC----CEEEE T ss_conf 9659998544478877--63113568507978999-9-8999-998579989997-898639999953999----80998 Q ss_pred CCC Q ss_conf 763 Q gi|254780294|r 81 TST 83 (311) Q Consensus 81 ~ss 83 (311) ..+ T Consensus 71 ~~g 73 (314) T PRK06932 71 ITA 73 (314) T ss_pred ECC T ss_conf 898 No 269 >KOG2733 consensus Probab=85.18 E-value=1.5 Score=22.65 Aligned_cols=123 Identities=20% Similarity=0.217 Sum_probs=62.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--ECCCCCCCCCCH------------------------------HHHCC Q ss_conf 0799975886789999999862997289999--653007860066------------------------------77479 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--PCEERHNLRYRE------------------------------DLLNA 49 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--~s~~~ag~~~~~------------------------------~~~~~ 49 (311) +-+-|.||||++|+-.++-+...-.++-..+ |+++. +++.+ +..+. T Consensus 6 yDvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~--~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak~ 83 (423) T KOG2733 6 YDVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNE--KKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAKQ 83 (423) T ss_pred EEEEEECCCCCCCEEEHHHHHHHHCCCCCEEEEECCCH--HHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHH T ss_conf 35999815666530248988643024675478732788--8999999998632488866543899437887899999864 Q ss_pred CCEEEECCCCH--HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH Q ss_conf 98999938983--7899999986125848982276303555431100210004776520496077258421133112478 Q gi|254780294|r 50 ADVSILCLPDV--ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR 127 (311) Q Consensus 50 ~Divf~a~p~~--~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~ 127 (311) +-+++-|++.= .-...+..+.|.|+. .+|-|+...+-... +.+-+++..-++--||+..|--.++.-+.+. T Consensus 84 ~~vivN~vGPyR~hGE~VVkacienG~~--~vDISGEP~f~E~m-----q~kYhd~A~ekGVYIVsaCGfDSIPaDlGv~ 156 (423) T KOG2733 84 ARVIVNCVGPYRFHGEPVVKACIENGTH--HVDISGEPQFMERM-----QLKYHDLAKEKGVYIVSACGFDSIPADLGVM 156 (423) T ss_pred HEEEEECCCCCEECCCHHHHHHHHCCCC--EECCCCCHHHHHHH-----HHHHHHHHHHCCEEEEEECCCCCCCCCCEEE T ss_conf 1787751556312471899999875985--33147887999999-----8878777775573999504667777510014 Q ss_pred HHHHHC Q ss_conf 888850 Q gi|254780294|r 128 PLRKAK 133 (311) Q Consensus 128 PL~~~~ 133 (311) -+.+.+ T Consensus 157 f~~k~f 162 (423) T KOG2733 157 FLRKNF 162 (423) T ss_pred EEHHHC T ss_conf 436332 No 270 >pfam07075 DUF1343 Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown. Probab=84.94 E-value=2.8 Score=20.97 Aligned_cols=71 Identities=13% Similarity=0.166 Sum_probs=50.7 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCC-------CCCCC----------------------CHHHHCCCCEEEECCCCHH--- Q ss_conf 999999986299728999965300-------78600----------------------6677479989999389837--- Q gi|254780294|r 14 GLKIRSRIVQRKDLCLLSIPCEER-------HNLRY----------------------REDLLNAADVSILCLPDVA--- 61 (311) Q Consensus 14 G~~li~lL~~hp~~~l~~l~s~~~-------ag~~~----------------------~~~~~~~~Divf~a~p~~~--- 61 (311) |+-++++|.+++.++|+.+.|-++ +|.++ ..+.++++|+++|-+-+-= T Consensus 14 ~~~~~d~L~~~~~v~l~~lF~PEHG~~G~~~ag~~v~~~~D~~tglpv~SLYg~~~~Pt~~~L~~iDvlv~DiQDvG~R~ 93 (359) T pfam07075 14 LEHLVDLLLAAPGVNLKALFGPEHGFRGDAQAGEKVGDYVDPKTGLPVYSLYGKTRKPTPEMLKGVDVLVFDIQDVGVRF 93 (359) T ss_pred CCCHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHCCCEEEEEEECCCEEE T ss_conf 87899999665698689981798787404214985678768888990897989999999999836999999742276156 Q ss_pred ------HHHHHHHHHHCCCCEEEECCCCC Q ss_conf ------89999998612584898227630 Q gi|254780294|r 62 ------SLEIIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 62 ------s~~~~~~~~~~g~~~~vid~ss~ 84 (311) -.....++.+.|...+|.|-=.. T Consensus 94 YTyi~Tm~~~meaaa~~~~~~iVLDRPNP 122 (359) T pfam07075 94 YTYISTLAYAMEAAAEAGKEFIVLDRPNP 122 (359) T ss_pred EEHHHHHHHHHHHHHHCCCCEEEECCCCC T ss_conf 54599999999999974995899478998 No 271 >TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. Probab=84.85 E-value=1.5 Score=22.64 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=26.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 079997588678999999986299728999965 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) +||+|||| |..|..+--.|.++..++++.+-. T Consensus 1 mkV~IVGa-GiaGL~lA~~L~r~g~i~V~V~Er 32 (414) T TIGR03219 1 LRVAIIGG-GIAGVALALNLCKHSHLNVQLFEA 32 (414) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 98999994-489999999998539998899942 No 272 >pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase. Probab=84.83 E-value=1.8 Score=22.21 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=28.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) +||||||| |.-|..-++-|.+. -++.+.+-.++..|- T Consensus 2 KrVAIIGA-G~SGL~a~K~lle~-G~~~~~FE~~~~iGG 38 (532) T pfam00743 2 KKVAVIGA-GVSGLSSIKCCLEE-GLEPTCFERSDDIGG 38 (532) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCC T ss_conf 87999897-29999999999877-998299977999735 No 273 >PRK05597 molybdopterin biosynthesis protein MoeB; Validated Probab=84.69 E-value=2.9 Score=20.90 Aligned_cols=118 Identities=10% Similarity=-0.028 Sum_probs=66.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC------------------------C Q ss_conf 07999758867899999998629972899---------------99653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~------------------------~ 42 (311) .+|.|||| |=.|.-.+.-|+.--.-+|. .+.+.+..|+. + T Consensus 29 s~VlvvG~-GGLG~~~~~yLa~aGvG~i~i~D~D~ve~sNL~RQ~l~~~~~iG~~K~~~a~~~l~~~np~i~i~~~~~~l 107 (355) T PRK05597 29 AKVSVIGA-GGLGSPALLYLAGAGVGHITIIDDDVVDLSNLHRQVIHTTAGVGTPKAESAREAMLALNPDVKVTVSVRRL 107 (355) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEHHHC T ss_conf 96899877-76689999999984997599972999261213377565412179797999999999878997427533215 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCE-EEECCCC Q ss_conf 6----6774799899993898378999999861258489822763035554311002100047765204960-7725842 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSAR-YITNPGC 117 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~-iIanPnC 117 (311) + .+.++++|+|+=|+++-.++-....+...-. +..|. ++.+|++-.+-...|.-.|-.+...+... -=..||| T Consensus 108 ~~~na~~li~~~DvVvD~tDn~~tR~lind~c~~~~-~PlV~-ga~~~~~Gq~~vf~~~~~pcyrclfP~~p~~~~~~~C 185 (355) T PRK05597 108 DWSNALSELADADVILDGSDNFDTRHVASWAAARLG-IPHVW-ASILGFDAQLSVFHAGHGPIYEDLFPTPPPPGSVPSC 185 (355) T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EECCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCH T ss_conf 777899775288789876788889999999999869-98799-6524467888634699998715578999972134671 Q ss_pred CCCCC Q ss_conf 11331 Q gi|254780294|r 118 YATGA 122 (311) Q Consensus 118 ~~t~~ 122 (311) ..... T Consensus 186 ~~~GV 190 (355) T PRK05597 186 SQAGV 190 (355) T ss_pred HHCCC T ss_conf 43287 No 274 >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] Probab=84.68 E-value=1.8 Score=22.21 Aligned_cols=72 Identities=24% Similarity=0.341 Sum_probs=47.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCCCCCCHHHHC------CCCEEEECCCCHHHHHHHHHHHHCCC Q ss_conf 07999758867899999998629-972899996530078600667747------99899993898378999999861258 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHNLRYREDLLN------AADVSILCLPDVASLEIIQLIKKNGI 74 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag~~~~~~~~~------~~Divf~a~p~~~s~~~~~~~~~~g~ 74 (311) .+|+|||| |..|...--.|.++ |..+++.|-.+.+.|-.+..+... +.+-.+++ -.+....+.|.|. T Consensus 1 ~~i~IiG~-GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~G~~~e~G~~~f~~~-----~~~~l~li~eLGl 74 (444) T COG1232 1 MKIAIIGG-GIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKIDGFLFERGPHHFLAR-----KEEILDLIKELGL 74 (444) T ss_pred CEEEEECC-CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCEEEEECHHHEECC-----HHHHHHHHHHHCC T ss_conf 93999878-28889999999985899867998348877865899831888875050440114-----0889999998481 Q ss_pred CEEEE Q ss_conf 48982 Q gi|254780294|r 75 NSRII 79 (311) Q Consensus 75 ~~~vi 79 (311) +-..+ T Consensus 75 ed~l~ 79 (444) T COG1232 75 EDKLL 79 (444) T ss_pred HHHHC T ss_conf 77640 No 275 >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. Probab=84.60 E-value=2.9 Score=20.88 Aligned_cols=56 Identities=16% Similarity=0.232 Sum_probs=37.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE-CCCCHHHHHHHHHHHHCCC Q ss_conf 079997588678999999986299728999965300786006677479989999-3898378999999861258 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL-CLPDVASLEIIQLIKKNGI 74 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~-a~p~~~s~~~~~~~~~~g~ 74 (311) .||.|+|+ |++|.|+-+.|.+. -.+++.+....+ ++. .++.+.+..+...+.+.|. T Consensus 138 k~vvViGg-G~IGlE~A~~l~~~-G~~Vtvve~~~~---------------il~~~~d~~~~~~~~~~l~~~Gv 194 (427) T TIGR03385 138 DRVVIIGG-GYIGLEMVEALRER-GKNVTLIHRSDK---------------ILNKLFDEEMNQIVEEELEKHEI 194 (427) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEEECCC---------------CCCCCCCHHHHHHHHHHHHHCCC T ss_conf 88999996-39999999999976-998999984683---------------36554899999999999997597 No 276 >PRK05920 aromatic acid decarboxylase; Validated Probab=84.54 E-value=1.7 Score=22.34 Aligned_cols=36 Identities=17% Similarity=0.328 Sum_probs=28.3 Q ss_pred CCE--EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 907--999758867-8999999986299728999965300 Q gi|254780294|r 1 MYK--IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 1 M~k--VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |.| |||=||||. -|.++++.|.+. .+|++++.|+.- T Consensus 4 mkrivvgITGASG~~ya~rll~~L~~~-~~ev~lviS~~a 42 (205) T PRK05920 4 MKRIVLAITGASGAIYGVRLLECLLAA-DYEVHLVISKAA 42 (205) T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHHC-CCEEEEEECHHH T ss_conf 875999986542799999999999867-998999986789 No 277 >KOG0029 consensus Probab=84.29 E-value=2.1 Score=21.74 Aligned_cols=43 Identities=19% Similarity=0.243 Sum_probs=34.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHH Q ss_conf 907999758867899999998629972899996530078600667 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRED 45 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~ 45 (311) +.+|.|||| |..|..--|.|.+- -+++..|-++...|-++... T Consensus 15 ~~~VIVIGA-GiaGLsAArqL~~~-G~~V~VLEARdRvGGRI~t~ 57 (501) T KOG0029 15 KKKVIVIGA-GLAGLSAARQLQDF-GFDVLVLEARDRVGGRIYTF 57 (501) T ss_pred CCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEEEEE T ss_conf 883899898-57899999999975-98259997147767647787 No 278 >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=84.27 E-value=3 Score=20.79 Aligned_cols=76 Identities=14% Similarity=0.020 Sum_probs=50.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCCCC---------C----CCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 079997588678999999986299-72899996530078---------6----006677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEERHN---------L----RYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ag---------~----~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .||+|+|. |-.|+-..+.|.++- ...+.......... . ....+.+.++|+++.+=+=.....+.. T Consensus 9 kkv~V~Gl-G~sG~aaa~~L~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~vv~SPGi~~~~p~~~ 87 (468) T PRK04690 9 KRVALWGW-GREGRAAYRALRAQLPAQPLTVFCNAEEVREVGALADAALLVETEASAQRLAAFEVVVKSPGISPYRPEAL 87 (468) T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHCCCCCEEECCCCHHHHHCCCEEEECCCCCCCCHHHH T ss_conf 97999834-78799999999966990499972883246466762045756746778557614889998995798689999 Q ss_pred HHHHCCCCEEEEC Q ss_conf 9861258489822 Q gi|254780294|r 68 LIKKNGINSRIID 80 (311) Q Consensus 68 ~~~~~g~~~~vid 80 (311) .+.++|.. |+. T Consensus 88 ~a~~~~i~--i~~ 98 (468) T PRK04690 88 AAAAQGTP--FIG 98 (468) T ss_pred HHHHCCCC--EEE T ss_conf 99987994--886 No 279 >TIGR01035 hemA glutamyl-tRNA reductase; InterPro: IPR000343 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway . The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin . The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) . This entry represents glutamyl-tRNA reductase (1.2.1.70 from EC), which reduces glutamyl-tRNA to glutamate-1-semialdehyde during the first stage of tetrapyrrole biosynthesis by the C5 pathway , . This enzyme required NADPH as a coenzyme.; GO: 0008883 glutamyl-tRNA reductase activity, 0050661 NADP binding, 0033014 tetrapyrrole biosynthetic process. Probab=84.11 E-value=2.2 Score=21.62 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=58.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CC--------CC-CCCC---------HHHHCCCCEEEECCCCHH- Q ss_conf 0799975886789999999862997289999653-00--------78-6006---------677479989999389837- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ER--------HN-LRYR---------EDLLNAADVSILCLPDVA- 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~--------ag-~~~~---------~~~~~~~Divf~a~p~~~- 61 (311) .||=|||| |--|+=.++-|.++-..++.-+--+ +. .| ..+. ++.+..+||||+|+++.- T Consensus 186 ~~~LliGA-GeMg~Lva~~L~~~~v~~~~i~NRt~~rA~~LA~e~~~P~~~~f~~La~~~L~~~L~~~DivissTgA~~p 264 (436) T TIGR01035 186 KKVLLIGA-GEMGELVAKHLREKGVGKVLIANRTYERAEKLAKELGGPEAVKFEALALEKLEEALAEADIVISSTGAPEP 264 (436) T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCC T ss_conf 41899827-45799999999648952898855677899999987078664544455489999997428899985576531 Q ss_pred --HHHHHHHH-HHC-----CCCEEEECCCCCHHHHHHH Q ss_conf --89999998-612-----5848982276303555431 Q gi|254780294|r 62 --SLEIIQLI-KKN-----GINSRIIDTSTAHRIAPGW 91 (311) Q Consensus 62 --s~~~~~~~-~~~-----g~~~~vid~ss~~R~~~~v 91 (311) +++....+ .++ .....+||.+-.---||++ T Consensus 265 i~~~~~~e~a~~~Rr~de~~~pl~~~DIAvPRdvd~~v 302 (436) T TIGR01035 265 IVSKEDVERALKERRRDEAARPLFIVDIAVPRDVDPEV 302 (436) T ss_pred CCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH T ss_conf 00203489999972220015886999758899863786 No 280 >pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis. Probab=84.07 E-value=1.8 Score=22.19 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=42.1 Q ss_pred CCCEEEEEEECCCCC-------C---CCC-CHHHHCCCCEEEECCCCHHHHHHHHHHHHC-CCCEEEECCCCCHH Q ss_conf 997289999653007-------8---600-667747998999938983789999998612-58489822763035 Q gi|254780294|r 24 RKDLCLLSIPCEERH-------N---LRY-REDLLNAADVSILCLPDVASLEIIQLIKKN-GINSRIIDTSTAHR 86 (311) Q Consensus 24 hp~~~l~~l~s~~~a-------g---~~~-~~~~~~~~Divf~a~p~~~s~~~~~~~~~~-g~~~~vid~ss~~R 86 (311) .+..++..+..++.. | ... ..+...++|++|+|+|-+...++.+.+... +.++.|.|-+|--. T Consensus 9 ~~~~~I~g~d~~~~~~~~A~~~g~id~~~~~~~~~~~aDlvila~Pv~~~~~~l~~l~~~~~~~~ivtDv~SvK~ 83 (258) T pfam02153 9 GFNVTVIGYDIDEEAAVAAVELGLGDEATNDIEAAQEADIVVLAVPIEVTLEVLKELAPHLKEGALITDVGSVKV 83 (258) T ss_pred CCCCEEEEEECCHHHHHHHHHCCCCCCCCCCHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCH T ss_conf 999679998599999999998699032468677766799999969999999999998865589958995355557 No 281 >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional Probab=83.92 E-value=3.1 Score=20.70 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=25.7 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 99975886789999999862997289999653 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |-|-|++|++|..|++.|.+..+-++..+..- T Consensus 2 ILVTGgaGFIGS~l~~~L~~~G~~~V~~~Dnl 33 (308) T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308) T ss_pred EEEEECCCHHHHHHHHHHHHCCCCCEEEEECC T ss_conf 99940597999999999997799809999789 No 282 >pfam02254 TrkA_N TrkA-N domain. This domain is found in a wide variety of proteins. These protein include potassium channels, phosphoesterases, and various other transporters. This domain binds to NAD. Probab=83.91 E-value=3.1 Score=20.69 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=41.8 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC------------------CCHHHHCCCCEEEECCCCHHHHHH Q ss_conf 99975886789999999862997289999653007860------------------066774799899993898378999 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR------------------YREDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~------------------~~~~~~~~~Divf~a~p~~~s~~~ 65 (311) |-|+|. |-+|+.+.+.|.++- ++..+..+...-++ +.+...+++|.++.++++....-. T Consensus 1 viI~G~-g~~G~~la~~L~~~~--~v~vId~d~~~~~~~~~~~~~vi~GD~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~ 77 (115) T pfam02254 1 IIIIGY-GRVGRSLAEELREGG--PVVVIDKDPERVEELREEGVPVVVGDATDEEVLEEAGIEDADAVVAATGDDEANIL 77 (115) T ss_pred CEEECC-CHHHHHHHHHHHHCC--CEEEEECCHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCCCEEEEECCCHHHHHH T ss_conf 999878-889999999998089--99999998799877886698699995688667876192028799996298499999 Q ss_pred HHHH Q ss_conf 9998 Q gi|254780294|r 66 IQLI 69 (311) Q Consensus 66 ~~~~ 69 (311) +-.. T Consensus 78 ~~~~ 81 (115) T pfam02254 78 IVLL 81 (115) T ss_pred HHHH T ss_conf 9999 No 283 >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture Probab=83.29 E-value=2.9 Score=20.88 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=57.9 Q ss_pred CEEEEECCCCHH-HHHHHHHHHCC---CCEEEEEEECCCCC---------------CC--CC-----CHHHHCCCCEEEE Q ss_conf 079997588678-99999998629---97289999653007---------------86--00-----6677479989999 Q gi|254780294|r 2 YKIFIDGEHGTT-GLKIRSRIVQR---KDLCLLSIPCEERH---------------NL--RY-----REDLLNAADVSIL 55 (311) Q Consensus 2 ~kVaIvGATG~v-G~~li~lL~~h---p~~~l~~l~s~~~a---------------g~--~~-----~~~~~~~~Divf~ 55 (311) +||+|+||=..+ ..+|++-|... |..+|.+..-++.. |. ++ .++.++++|+||. T Consensus 1 ~KI~iIGgGS~~ftp~li~~l~~~~~l~~~ei~L~Did~erl~~v~~l~~~~~~~~~~~~~v~~Ttd~~eAl~gADfV~~ 80 (423) T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE T ss_conf 97999998648759999999960845789989998899999999999999999851998189996899998468999999 Q ss_pred CC--CCHHHHHHHH-HHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 38--9837899999-986125848982276---30355543110021000477652049607725842 Q gi|254780294|r 56 CL--PDVASLEIIQ-LIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 56 a~--p~~~s~~~~~-~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) +. +.-.++..-. .-.+.|..--|-+.. +-++.--.+|..+ |+-.+-.+.-++++++.--|. T Consensus 81 ~irvGg~~~r~~De~Iplk~Gv~~~vGET~G~GG~~~alRtIPv~l-eia~~i~e~~P~AwiiNytNP 147 (423) T cd05297 81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLL-DIARDIEELCPDAWLLNYANP 147 (423) T ss_pred EEEECCCHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCHHHHH-HHHHHHHHHCCCCEEEECCCH T ss_conf 8774682488988848988396604456547758999862289999-999999987998389976788 No 284 >KOG0455 consensus Probab=83.24 E-value=3.3 Score=20.52 Aligned_cols=34 Identities=18% Similarity=0.269 Sum_probs=25.1 Q ss_pred EEEEECCCCHHHHHHHHHHHCC--------CCEEEEEEECCCC Q ss_conf 7999758867899999998629--------9728999965300 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR--------KDLCLLSIPCEER 37 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h--------p~~~l~~l~s~~~ 37 (311) +|+++|+ |-||++|++.+..- -.+++..+++.++ T Consensus 5 nVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~ 46 (364) T KOG0455 5 NVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSES 46 (364) T ss_pred CEEEEEC-CCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC T ss_conf 0899945-60679999999877643116716999999941313 No 285 >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=82.87 E-value=2.8 Score=20.91 Aligned_cols=33 Identities=18% Similarity=0.213 Sum_probs=27.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 90799975886789999999862997289999653 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |..|.|||| |.||.-+--.|.+. .+.+..+..+ T Consensus 1 m~DV~IvGa-G~vGl~lAl~La~~-g~~v~lie~~ 33 (374) T PRK06617 1 MSNTVILGC-GLSGMLTALSFAQK-GIKTTIFESK 33 (374) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECC T ss_conf 962999996-69999999999857-9969999789 No 286 >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Probab=82.83 E-value=3.4 Score=20.42 Aligned_cols=123 Identities=15% Similarity=0.088 Sum_probs=67.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----------CCEEEE-----EEECCCCCCCC----------C-------------- Q ss_conf 07999758867899999998629----------972899-----99653007860----------0-------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR----------KDLCLL-----SIPCEERHNLR----------Y-------------- 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h----------p~~~l~-----~l~s~~~ag~~----------~-------------- 42 (311) .+|.|||| |-.|......|..- ..+|+. .+..++..|+. + T Consensus 25 s~VlIVGa-GGLGs~~a~~La~aGVG~l~ivD~D~Ve~SNL~RQ~L~~~~Dig~~k~Ka~aA~~~L~~iNp~v~I~~~~~ 103 (337) T PRK12475 25 KHVLIIGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQYKPKAIAAAEHLRKINSEVEIVPVVT 103 (337) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCEECCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEHH T ss_conf 96999977-77789999999982898699984998314467453002221215574889999999984499974475131 Q ss_pred --C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf --6----6774799899993898378999999861258489822763035554311002100047765204960772584 Q gi|254780294|r 43 --R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 43 --~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) . ++.++++|+|+=|+++-.++-+...+.-+-. +.+|. +++.+++..+--.+|.-.+-.+-..+. -..++. T Consensus 104 ~l~~~n~~~li~~~DlViD~tDNf~tR~liNd~c~~~~-~PlV~-ga~~g~~G~~~~~~p~~tpCyrClf~~--p~~~~t 179 (337) T PRK12475 104 DVTVEEMEELIKEVDLIIDATDNFDTRLLINDISQKYN-IPWIY-GGCVGSYGVTYTIIPGKTPCFRCLMEH--PVGGAT 179 (337) T ss_pred CCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHC-CCEEE-EEEECCEEEEEEECCCCCCCHHHCCCC--CCCCCC T ss_conf 19979999998618899988889999999999999969-99899-887056889998779998734115799--998998 Q ss_pred CCCCCCHHHHHHH Q ss_conf 2113311247888 Q gi|254780294|r 117 CYATGAIAILRPL 129 (311) Q Consensus 117 C~~t~~~laL~PL 129 (311) |.+...+-++..+ T Consensus 180 C~~~GVlgp~~gi 192 (337) T PRK12475 180 CDTAGIIQPAVQI 192 (337) T ss_pred CCCCCCCCCHHHH T ss_conf 6457766333889 No 287 >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional Probab=82.76 E-value=3.4 Score=20.41 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=49.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--------ECCCCC---------CCCCCHHHHCCCCEEEECCCCH---H Q ss_conf 0799975886789999999862997289999--------653007---------8600667747998999938983---7 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--------PCEERH---------NLRYREDLLNAADVSILCLPDV---A 61 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--------~s~~~a---------g~~~~~~~~~~~Divf~a~p~~---~ 61 (311) +++.|||-|=.||+=|-.||.++ ...++.+ .-..+. ......+.....|+++.|.|.. + T Consensus 63 k~vvVIGRS~iVGkPla~LL~~~-~ATVt~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDIvI~avg~p~~~i 141 (197) T cd01079 63 KTITIINRSEVVGRPLAALLAND-GARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKV 141 (197) T ss_pred CEEEEECCCCCCCHHHHHHHHHC-CCEEEEECCCCEEEEECCCCCCCEEEEECCCCHHHHHHCCCCCEEEECCCCCCCCC T ss_conf 98999898731548899999738-99677503442146404665221245641421005654234799998878776656 Q ss_pred HHHHHHHHHHCCCCEEEECCCCCH Q ss_conf 899999986125848982276303 Q gi|254780294|r 62 SLEIIQLIKKNGINSRIIDTSTAH 85 (311) Q Consensus 62 s~~~~~~~~~~g~~~~vid~ss~~ 85 (311) ..+| .+.| ..|||-+..- T Consensus 142 ~~~~----vk~G--aivIDvg~~~ 159 (197) T cd01079 142 PTEL----LKDG--AICINFASIK 159 (197) T ss_pred CHHH----CCCC--CEEEEECCCC T ss_conf 6755----4489--6899816843 No 288 >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional Probab=82.60 E-value=3.5 Score=20.37 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=25.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) +||||||+ |=.|..--..|... -.+++.+-.....|- T Consensus 138 kkVAVIGa-GPAGLsaA~~La~~-G~~VtVfE~~~~~GG 174 (560) T PRK12771 138 KRVAVIGG-GPAGLSAAYQLRRL-GHAVTIFEAGPKLGG 174 (560) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCCCC T ss_conf 98999897-78999999999976-985899676788898 No 289 >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional Probab=82.11 E-value=3.6 Score=20.26 Aligned_cols=70 Identities=14% Similarity=0.140 Sum_probs=48.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCC------------------------C Q ss_conf 0799975886789999999862997289999---------------653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~------------------------~ 42 (311) .+|.|||+ |-+|......|+.--.-+|+.+ .+++..|+. + T Consensus 33 s~VlivG~-GGlG~~~~~~La~aGvg~i~lvD~D~ve~sNLnRQ~l~~~~diG~~Kv~~a~~~l~~inp~i~i~~~~~~i 111 (245) T PRK05690 33 ARVLVVGL-GGLGCAAAQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESAKAALARINPHIAIETINARL 111 (245) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEEHHCC T ss_conf 97899877-77789999999985996599996886788867888645987789887999999999758875226333144 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHHHC Q ss_conf 6----67747998999938983789999998612 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIKKN 72 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~ 72 (311) . .+.++++|+|+-|+++-.++.+...+..+ T Consensus 112 ~~~n~~~li~~~DlViD~~Dn~~~R~~ln~~c~~ 145 (245) T PRK05690 112 DDDELAALIAAHDLVLDCTDNVATRNQLNAACFA 145 (245) T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 8889988750788899878999999999999997 No 290 >KOG0657 consensus Probab=81.82 E-value=0.7 Score=24.69 Aligned_cols=97 Identities=12% Similarity=0.116 Sum_probs=63.5 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHH Q ss_conf 79989999389837899999986125848982276303555431100210004776520496077258421133112478 Q gi|254780294|r 48 NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILR 127 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~ 127 (311) .+.|++.-+.+--.+.+-+....+.|...++|+..+. |.|.-+..||.+..+.-. .+|+|--|++.+..--.+ T Consensus 73 ~g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps~-----dapmfv~gVn~~~y~~~~--~iiSnascttnclaPlaK 145 (285) T KOG0657 73 KGADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPSA-----DAPMFVMGVNGEKYDNSL--DIISNASCTTNCLAPLAK 145 (285) T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-----CCCCCCCCCCCCCCCCCC--CEEECHHHHHCCCCCHHH T ss_conf 2750575056542124566521146625899605467-----787210255555556544--223035665412351432 Q ss_pred HHHHHCCCCCCCCEEEEEECCCCC Q ss_conf 888850345565026765123333 Q gi|254780294|r 128 PLRKAKLLPDRYPITINAVSGYTG 151 (311) Q Consensus 128 PL~~~~~i~~~~~~~~~~~sg~sg 151 (311) -+++.++|.+..-+++.++.+... T Consensus 146 Vi~d~fgI~EgLMtTvha~tatQk 169 (285) T KOG0657 146 VIHDNFGIMEGLMTTVHAITATQK 169 (285) T ss_pred EEECCCCCCCCCCCCEEEECCCCC T ss_conf 120034411343342022025554 No 291 >PRK08291 ornithine cyclodeaminase; Validated Probab=81.71 E-value=3.2 Score=20.61 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.2 Q ss_pred HHHHHHHHHHHHH Q ss_conf 1368999999998 Q gi|254780294|r 294 KGASGAAIQNMDL 306 (311) Q Consensus 294 KGAAgnAVQn~nl 306 (311) -|-|.|=+-.+.+ T Consensus 302 ~G~ai~D~a~A~~ 314 (330) T PRK08291 302 TGTGVQDTAIATL 314 (330) T ss_pred CCHHHHHHHHHHH T ss_conf 8849999999999 No 292 >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] Probab=81.70 E-value=3.8 Score=20.16 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=48.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHC--CCCEEEEC--CCC-HHHHHHHHHHHHCCCC Q ss_conf 907999758867899999998629972899996530078600667747--99899993--898-3789999998612584 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLN--AADVSILC--LPD-VASLEIIQLIKKNGIN 75 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~--~~Divf~a--~p~-~~s~~~~~~~~~~g~~ 75 (311) |.++-|-|||+=.|+++.+.|++| ..++.+++-++..=..+..+.-. ++++-+.. +.. +........+.+.++. T Consensus 6 ~~~~lITGASsGIG~~~A~~lA~~-g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265) T COG0300 6 GKTALITGASSGIGAELAKQLARR-GYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGGP 84 (265) T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCC T ss_conf 867999778864899999999977-9979999676999999999998730862799977678836799999999824885 Q ss_pred EEE-ECCCC Q ss_conf 898-22763 Q gi|254780294|r 76 SRI-IDTST 83 (311) Q Consensus 76 ~~v-id~ss 83 (311) +-+ |.|++ T Consensus 85 IdvLVNNAG 93 (265) T COG0300 85 IDVLVNNAG 93 (265) T ss_pred CCEEEECCC T ss_conf 238997787 No 293 >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] Probab=81.32 E-value=3.9 Score=20.08 Aligned_cols=31 Identities=29% Similarity=0.275 Sum_probs=14.5 Q ss_pred EEEECCCCHHHHHHHHH----HHHCCCCEEEECCC Q ss_conf 99993898378999999----86125848982276 Q gi|254780294|r 52 VSILCLPDVASLEIIQL----IKKNGINSRIIDTS 82 (311) Q Consensus 52 ivf~a~p~~~s~~~~~~----~~~~g~~~~vid~s 82 (311) .+++.-.+..|+-|+.. +.+.|.....++.+ T Consensus 34 avilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~ 68 (283) T COG0190 34 AVILVGDDPASQVYVRSKKKAAEEIGIASELYDLP 68 (283) T ss_pred EEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEECC T ss_conf 99996797789999999999999819736898578 No 294 >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] Probab=81.30 E-value=3.4 Score=20.41 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC Q ss_conf 9079997588678999999986299-728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~ 37 (311) |.||-|||+ ||.|....+-|..++ ..+++++.-... T Consensus 3 ~~~iVIlGg-GfgGl~~a~~l~~~~~~~~itLVd~~~~ 39 (405) T COG1252 3 KKRIVILGG-GFGGLSAAKRLARKLPDVEITLVDRRDY 39 (405) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCCCEEEEEECCCC T ss_conf 756999898-6799999997641678871899918876 No 295 >PRK07574 formate dehydrogenase; Provisional Probab=81.26 E-value=3.9 Score=20.07 Aligned_cols=52 Identities=23% Similarity=0.166 Sum_probs=27.8 Q ss_pred HHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHH Q ss_conf 999862997289999653007860066774799899993--898378999999861 Q gi|254780294|r 18 RSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKK 71 (311) Q Consensus 18 i~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~ 71 (311) .+.|+.+ --++...+.+...+ ..-+..+.+.|++++. -|.=++++...++.. T Consensus 61 r~~le~~-gh~~v~t~dk~g~~-~~~~~~l~da~ivis~pf~p~ylT~E~IekApn 114 (385) T PRK07574 61 RTFLEER-GHELVVTSDKDGPD-SVFERELPDADVVISQPFWPAYLTAERIAKAPN 114 (385) T ss_pred HHHHHHC-CCEEEEECCCCCCC-CHHHHHCCCCEEEECCCCCCCCCCHHHHHCCCC T ss_conf 8889855-91699965888985-067751577639974588732114999943886 No 296 >KOG2337 consensus Probab=81.14 E-value=3.9 Score=20.04 Aligned_cols=129 Identities=16% Similarity=0.145 Sum_probs=65.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-----------------CCCC----------------------- Q ss_conf 079997588678999999986299728999965300-----------------7860----------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-----------------HNLR----------------------- 41 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-----------------ag~~----------------------- 41 (311) .|+-++|| |.-|-..-|-|..--...|+++....- .|.+ T Consensus 341 ~KcLLLGA-GTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~m~atG~~ 419 (669) T KOG2337 341 TKCLLLGA-GTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPSMEATGYV 419 (669) T ss_pred CEEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCEEECCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCEE T ss_conf 23689727-64321888888751230689872571423663544333166664068730588999999857542232037 Q ss_pred ---------CC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHH----HH------ Q ss_conf ---------06--------------6774799899993898378999999861258489822763035----55------ Q gi|254780294|r 42 ---------YR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHR----IA------ 88 (311) Q Consensus 42 ---------~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R----~~------ 88 (311) +. +...++.|++|+.++.-.|+ |.|.+..+..+..||..+--|. |- T Consensus 420 lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESR-WLPtll~a~~~KivINaALGFDsylVMRHG~~~~ 498 (669) T KOG2337 420 LSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESR-WLPTLLAAAKNKIVINAALGFDSYLVMRHGTGRK 498 (669) T ss_pred EECCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCHHH-HHHHHHHHHHCCEEEEEECCCCEEEEEECCCCCC T ss_conf 963479982643337889889999999876456699972450320-2678887522126765200665368986278875 Q ss_pred --------------HHHHHCCCCC-------CHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHH Q ss_conf --------------4311002100-------0477652049607725842113311247888885 Q gi|254780294|r 89 --------------PGWVYGFPEM-------DKSQKEKIRSARYITNPGCYATGAIAILRPLRKA 132 (311) Q Consensus 89 --------------~~vpl~vPEv-------N~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~ 132 (311) +.-.|+.+=- |.---..+..+.-|+-|||..++..+|..-|... T Consensus 499 ~~~~d~q~s~~~~i~~~qLGCYFCnDV~AP~nSl~DRTLDQqCTVtRPG~a~IA~alAVELlvsl 563 (669) T KOG2337 499 EASDDGQSSDLKCINGDQLGCYFCNDVVAPGNSLTDRTLDQQCTVTRPGVANIASALAVELLVSL 563 (669) T ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCEECCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHH T ss_conf 44542001432467755401476766205887544333311001137751677789999999999 No 297 >PRK12409 D-amino acid dehydrogenase small subunit; Provisional Probab=81.05 E-value=3.3 Score=20.48 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 907999758867899999998629972899996530 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE 36 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~ 36 (311) |.+|+|||| |.||.-.---|.++ -.+++.+...+ T Consensus 1 m~~V~VIGa-GivGlstA~~La~~-G~~VtviDr~~ 34 (410) T PRK12409 1 MSHIAVIGA-GITGVTTAYALAQR-GYQVTVFDRHR 34 (410) T ss_pred CCCEEEECC-HHHHHHHHHHHHHC-CCCEEEEECCC T ss_conf 995999898-39999999999978-99189996989 No 298 >KOG0172 consensus Probab=80.83 E-value=4 Score=19.97 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=50.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC----C---------------HHHHCCCCEEEECCCCHH Q ss_conf 907999758867899999998629972899996530078600----6---------------677479989999389837 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY----R---------------EDLLNAADVSILCLPDVA 61 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~----~---------------~~~~~~~Divf~a~p~~~ 61 (311) |.+|-++|+ |+|-+-.++.|++..+++++.-+-.-+.++.+ . +...+..|++.+-+|-.. T Consensus 2 ~~~vlllgs-g~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~~v~~~D~viSLlP~t~ 80 (445) T KOG0172 2 KKGVLLLGS-GFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRKEVKPLDLVISLLPYTF 80 (445) T ss_pred CCCEEEECC-CCCCCHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHCCCCEEEEECCCHH T ss_conf 862699537-5313347888741678238986346778999842788650677742517889865154112664043013 Q ss_pred HHHHHHHHHHC Q ss_conf 89999998612 Q gi|254780294|r 62 SLEIIQLIKKN 72 (311) Q Consensus 62 s~~~~~~~~~~ 72 (311) -.-.+..+... T Consensus 81 h~lVaK~~i~~ 91 (445) T KOG0172 81 HPLVAKGCIIT 91 (445) T ss_pred HHHHHHHHHHH T ss_conf 38899888886 No 299 >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional Probab=80.40 E-value=4.2 Score=19.89 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=30.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCC Q ss_conf 07999758867899999998629-97289999653007 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERH 38 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~a 38 (311) .+|-|||+ |..|....+-|.++ +..+|+.+..+... T Consensus 4 ~~iVIIG~-G~AG~~aA~~lR~~g~~g~Itli~~E~~~ 40 (400) T PRK09754 4 KTIIIVGG-GQAAAMAAASLRQQGFTGELHLFSDERHL 40 (400) T ss_pred CEEEEECC-HHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 72999977-59999999999806949979999899999 No 300 >COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism] Probab=80.06 E-value=3.7 Score=20.17 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=27.3 Q ss_pred EEEECCCCH-HHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 999758867-8999999986299728999965300 Q gi|254780294|r 4 IFIDGEHGT-TGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 4 VaIvGATG~-vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |||=||||. -|-+|++.|.+.. .|++++-|+.. T Consensus 7 vgisGASG~iygvrlLe~L~~~~-~e~hlviS~~a 40 (191) T COG0163 7 VGISGASGAIYGVRLLEVLRELG-VETHLVISKAA 40 (191) T ss_pred EEEECCCCHHHHHHHHHHHHHCC-CEEEEEECHHH T ss_conf 99736642899999999997469-56999986789 No 301 >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in Probab=79.60 E-value=4.4 Score=19.73 Aligned_cols=109 Identities=17% Similarity=0.076 Sum_probs=58.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----CCEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEE Q ss_conf 07999758867899999998629----97289999653007---------------8600-------6677479989999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR----KDLCLLSIPCEERH---------------NLRY-------REDLLNAADVSIL 55 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h----p~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~ 55 (311) .||+|+||-+.-..+|++=|..+ |..+|.+..-++.. |..+ .++.++++|+||. T Consensus 1 mKI~iIGaGS~~t~~lv~~l~~~~~~l~~~ei~L~DId~erL~~~~~~a~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~ 80 (425) T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425) T ss_pred CEEEEECCCHHHHHHHHHHHHHCHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE T ss_conf 97999898368789999999838433788989998899999999999999999961998389997899998568999999 Q ss_pred CC--CCHHHHHHH-HHHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEE Q ss_conf 38--983789999-9986125848982276---3035554311002100047765204960772 Q gi|254780294|r 56 CL--PDVASLEII-QLIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYIT 113 (311) Q Consensus 56 a~--p~~~s~~~~-~~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIa 113 (311) +. +.-.++..- ..-.+.| ..--|.. +-||---.+|..+. +-.+-.+.-++++++- T Consensus 81 ~irvGg~~~r~~De~IplkyG--v~gqeT~G~GG~~~alRtIPv~l~-ia~~i~e~cP~AwliN 141 (425) T cd05197 81 QFRVGGLTYREKDEQIPLKYG--VIGQETVGPGGTFSGLRQIPYVLD-IARKXEKLSPDAWYLN 141 (425) T ss_pred EEEECCHHHHHHHHHHHHHCC--CEEECCCCHHHHHHHHHHHHHHHH-HHHHHHHHCCCEEEEE T ss_conf 887567057899986898759--144437778899999842999999-9999998699808997 No 302 >PRK04965 nitric oxide reductase; Provisional Probab=79.43 E-value=3.5 Score=20.32 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=30.5 Q ss_pred CCE-EEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC Q ss_conf 907-999758867899999998629-9728999965300 Q gi|254780294|r 1 MYK-IFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER 37 (311) Q Consensus 1 M~k-VaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ 37 (311) |.+ |-|||+ |+.|..+.+-|.++ |..+|+.+..+.. T Consensus 1 M~~~IVIIG~-G~AG~~aa~~lR~~d~~~~Itvi~~e~~ 38 (378) T PRK04965 1 MSNGIVIIGS-GFAARQLVKNIRKQDAHIPITLITADSG 38 (378) T ss_pred CCCCEEEECC-CHHHHHHHHHHHCCCCCCCEEEEECCCC T ss_conf 9899999988-2999999999971194986999989999 No 303 >PRK07102 short chain dehydrogenase; Provisional Probab=79.40 E-value=3.2 Score=20.58 Aligned_cols=45 Identities=22% Similarity=0.162 Sum_probs=34.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH Q ss_conf 9079997588678999999986299728999965300786006677 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL 46 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~ 46 (311) |++|-|.|||+=.|+++-+.|.++- .++...+.+...-+++.++. T Consensus 1 MK~vlITGassGIG~a~A~~la~~G-~~v~l~~R~~~~l~~~~~~l 45 (243) T PRK07102 1 MKKILIIGATSDIARACARRYAAAG-ARLYLAARDTERLERIAADL 45 (243) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHH T ss_conf 9979991574599999999999879-98999989889999999999 No 304 >PRK07340 ornithine cyclodeaminase; Validated Probab=79.10 E-value=3.9 Score=20.06 Aligned_cols=11 Identities=9% Similarity=0.181 Sum_probs=3.8 Q ss_pred HHHHHHHHHHH Q ss_conf 36899999999 Q gi|254780294|r 295 GASGAAIQNMD 305 (311) Q Consensus 295 GAAgnAVQn~n 305 (311) |-|.|=+-.+. T Consensus 285 G~a~~Dla~A~ 295 (304) T PRK07340 285 GCAAWDLAACR 295 (304) T ss_pred CHHHHHHHHHH T ss_conf 85999999999 No 305 >PRK06141 ornithine cyclodeaminase; Validated Probab=78.94 E-value=4.6 Score=19.60 Aligned_cols=15 Identities=13% Similarity=0.124 Sum_probs=8.4 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 136899999999872 Q gi|254780294|r 294 KGASGAAIQNMDLLL 308 (311) Q Consensus 294 KGAAgnAVQn~nlm~ 308 (311) -|-|.+=+-.+++.+ T Consensus 294 vG~a~~Dla~A~~vy 308 (313) T PRK06141 294 VGTALEDLAAAILVY 308 (313) T ss_pred CCHHHHHHHHHHHHH T ss_conf 986999999999999 No 306 >PRK08118 topology modulation protein; Reviewed Probab=78.51 E-value=2 Score=21.86 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=28.1 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEE Q ss_conf 907999758867899999998629---972899996 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIP 33 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~ 33 (311) |.||.|+|.+|-.=..|-+.|+++ |.+++-.+. T Consensus 1 M~rI~IiG~~GsGKSTlAr~L~~~~~ip~~~LD~l~ 36 (167) T PRK08118 1 MKKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALF 36 (167) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCCEE T ss_conf 967999889998799999999998896979644347 No 307 >TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases; InterPro: IPR004507 This family contains flavoproteins, which are aromatic acid decarboxylases. An example is the Saccharomyces cerevisiae gene, PAD1 that encodes phenylacrylic acid decarboxylase. Mutations of this gene are viable and confer resistance to cinnamic acid. ; GO: 0016831 carboxy-lyase activity. Probab=78.46 E-value=3.1 Score=20.72 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.2 Q ss_pred CCEEEEECCCCHH-HHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 9079997588678-999999986299728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTT-GLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~v-G~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |+=|||=||||.. |.+|++.|-+. -.|+.++.|+.- T Consensus 1 ~ivVa~TGAsGvI~G~RLL~~Lk~~-GvE~~LviS~~A 37 (181) T TIGR00421 1 KIVVAITGASGVIYGIRLLEVLKEL-GVEVHLVISKWA 37 (181) T ss_pred CEEEEECCHHHHHHHHHHHHHHHHC-CCEEEEEECHHH T ss_conf 9578622244899999999999867-936878635589 No 308 >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=78.20 E-value=4.9 Score=19.46 Aligned_cols=72 Identities=22% Similarity=0.246 Sum_probs=47.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-----------CCC-----CCHHHHCCCCEEEECCCCHHHHHH Q ss_conf 0799975886789999999862997289999653007-----------860-----066774799899993898378999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-----------NLR-----YREDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-----------g~~-----~~~~~~~~~Divf~a~p~~~s~~~ 65 (311) .||.|+|. |-.|.-.+++|.++ ..++.....+.+. |.+ ..+..+.++|+++.+-+=...... T Consensus 6 k~v~viGl-G~sG~s~a~~L~~~-G~~v~~~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPgI~~~~p~ 83 (445) T PRK04308 6 KKILVAGL-GGTGISMIAYLRKN-GAEVAAYDAELKAERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPD 83 (445) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCCCCHHHHHHHCCCCCEEEECCCHHHHCCCCCEEEECCCCCCCCHH T ss_conf 98999998-99999999999978-99199997999953189997436996899378636501599999989953899999 Q ss_pred HHHHHHCCCC Q ss_conf 9998612584 Q gi|254780294|r 66 IQLIKKNGIN 75 (311) Q Consensus 66 ~~~~~~~g~~ 75 (311) ...+.+.|.. T Consensus 84 l~~a~~~gi~ 93 (445) T PRK04308 84 IEAFKQNGGR 93 (445) T ss_pred HHHHHHCCCC T ss_conf 9999975995 No 309 >PRK08605 D-lactate dehydrogenase; Validated Probab=78.03 E-value=4.9 Score=19.43 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=52.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861258489822 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) |.||.+.|... .=+.+++...+.-.+|+......-+. . .-+..+++|.+....-..++++....+.+.| +++|. T Consensus 1 m~Ki~~~~~~~-~e~~~~~~~~~~~~~ev~~~~~~~~e--e-~i~~~~~~D~i~v~~~~~i~~~vl~~~~~l~--iK~I~ 74 (332) T PRK08605 1 MTKIKLMSVRD-EDAPYIKAWAEKHHVEVDLTKEALTD--D-NVEEVEGFDGLSLSQQIPLSEAIYKLLNELG--IKQIA 74 (332) T ss_pred CCEEEEEECCH-HHHHHHHHHHHHCCCEEEEECCCCCH--H-HHHHHCCCCEEEEECCCCCCHHHHHHHHHCC--CEEEE T ss_conf 97699982766-56999999888659079996699998--9-9998579988999707977999999666369--77999 Q ss_pred CCC Q ss_conf 763 Q gi|254780294|r 81 TST 83 (311) Q Consensus 81 ~ss 83 (311) ..+ T Consensus 75 r~g 77 (332) T PRK08605 75 QRS 77 (332) T ss_pred ECC T ss_conf 777 No 310 >KOG0685 consensus Probab=77.94 E-value=3.8 Score=20.15 Aligned_cols=40 Identities=28% Similarity=0.410 Sum_probs=31.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC Q ss_conf 79997588678999999986299728999965300786006 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR 43 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~ 43 (311) ||+|||| |+.|..--+.|.+--..++..+-++.+.|-++. T Consensus 23 kIvIIGA-G~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ 62 (498) T KOG0685 23 KIVIIGA-GIAGLAAATRLLENGFIDVLILEASDRIGGRIH 62 (498) T ss_pred EEEEECC-CHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEE T ss_conf 4999898-567799999999828964899970466675576 No 311 >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas Probab=77.69 E-value=5 Score=19.37 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=39.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----CCEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEE Q ss_conf 07999758867899999998629----97289999653007---------------8600-------6677479989999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR----KDLCLLSIPCEERH---------------NLRY-------REDLLNAADVSIL 55 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h----p~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~ 55 (311) .||+|+||=+.-..++++=|..+ |..+|.+..-.... |..+ .++.++++|+|+. T Consensus 1 mKI~iIGaGS~~t~~li~~l~~~~~~l~~~ei~L~DId~~rL~~~~~la~~~~~~~g~~~~i~~ttdr~eAL~gADfVi~ 80 (437) T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEEE T ss_conf 96999898468779999999828200698889997799999999999999999852998179996799998579999999 Q ss_pred CC Q ss_conf 38 Q gi|254780294|r 56 CL 57 (311) Q Consensus 56 a~ 57 (311) +. T Consensus 81 ~i 82 (437) T cd05298 81 QI 82 (437) T ss_pred EE T ss_conf 66 No 312 >PRK11749 putative oxidoreductase; Provisional Probab=77.36 E-value=5.2 Score=19.31 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=25.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCC Q ss_conf 0799975886789999999862997289999653007860 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLR 41 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~ 41 (311) +||||||| |=-|..--..|.+. -.+++.+-.....|-- T Consensus 141 kkVAIIGa-GPAGLsAA~~Lar~-G~~VtVfE~~~~~GGl 178 (460) T PRK11749 141 KKVAVIGA-GPAGLTAAHRLARK-GYDVTIFEARDKAGGL 178 (460) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCCE T ss_conf 98999896-78999999999976-9847997047878755 No 313 >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated Probab=77.02 E-value=5.3 Score=19.25 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=10.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCC Q ss_conf 7999758867899999998629 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h 24 (311) ||.|+|+ |-.|...-..+.+. T Consensus 2 ~vvVIG~-GpaG~~aA~~aa~~ 22 (458) T PRK06912 2 KLVIIGG-GPAGYVAAITAAQN 22 (458) T ss_pred EEEEEEE-CHHHHHHHHHHHHC T ss_conf 4999900-88999999999978 No 314 >PRK09483 response regulator; Provisional Probab=76.20 E-value=5.5 Score=19.12 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=55.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEE Q ss_conf 90799975886789999999862997289999653007860066774799899993--8983789999998612584898 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRI 78 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~v 78 (311) |+||.|+=--=++-.-|-.+|++.|.+++..-+++....... ..-...|++++- +|..-.-+.+..+.+.....+| T Consensus 1 Mi~VlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~--~~~~~pDvvllDl~lp~~~Gl~~~~~i~~~~p~~~v 78 (216) T PRK09483 1 MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKW--CRTNAVDVVLMDMNMPGIGGLEATRKILRSTPDVKI 78 (216) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHH--HHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCE T ss_conf 958999849999999999999748995899998999999999--985599999986889898752377888740899857 Q ss_pred ECCCC Q ss_conf 22763 Q gi|254780294|r 79 IDTST 83 (311) Q Consensus 79 id~ss 83 (311) +=.|+ T Consensus 79 ivls~ 83 (216) T PRK09483 79 IMLTV 83 (216) T ss_pred EEECC T ss_conf 86305 No 315 >PRK08643 acetoin reductase; Validated Probab=75.93 E-value=5.6 Score=19.07 Aligned_cols=85 Identities=14% Similarity=0.177 Sum_probs=45.9 Q ss_pred CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHH-CCCCEEEECCC----CHHHHHHHHHHHHCCC Q ss_conf 90799-975886789999999862997289999653007860066774-79989999389----8378999999861258 Q gi|254780294|r 1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLL-NAADVSILCLP----DVASLEIIQLIKKNGI 74 (311) Q Consensus 1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~-~~~Divf~a~p----~~~s~~~~~~~~~~g~ 74 (311) |.||+ |-||++=.|+.+.+.|.+.- ..+....-++...++..++.. .+.+..++..+ .++-.-+.....+-|. T Consensus 1 mnKvalVTGg~~GIG~aia~~la~~G-a~V~i~d~~~~~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 79 (256) T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDG-FKVAIVDYNEETAKAAADKLSSDGGKAIAVKADVSNRDQVFDAVQQVVDTFGD 79 (256) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHCC T ss_conf 98499995757889999999999879-99999969889999999999853990999980589999999999999998299 Q ss_pred CEEEECCCCCHH Q ss_conf 489822763035 Q gi|254780294|r 75 NSRIIDTSTAHR 86 (311) Q Consensus 75 ~~~vid~ss~~R 86 (311) --..|.|++-.. T Consensus 80 iDiLVNnAG~~~ 91 (256) T PRK08643 80 LNVVVNNAGLAP 91 (256) T ss_pred CCEEEECCCCCC T ss_conf 879998998899 No 316 >PRK07208 hypothetical protein; Provisional Probab=75.86 E-value=5.7 Score=19.06 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=30.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC Q ss_conf 07999758867899999998629972899996530078600 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~ 42 (311) .||+|||| |..|...-..|.++ ..+++.+-.+...|--. T Consensus 4 kkv~IiGA-G~~GL~aA~~L~~~-g~~v~vlEk~~~vGGl~ 42 (474) T PRK07208 4 KSVVIIGA-GPAGLTAAYELVKR-GYPVTILEADPEVGGIS 42 (474) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCEE T ss_conf 75999897-68999999999868-99759997899875447 No 317 >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated Probab=75.42 E-value=5.8 Score=18.99 Aligned_cols=96 Identities=16% Similarity=0.223 Sum_probs=51.4 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHH-HCCCCEEEECCCC---HHHHHHHHHHHHC-CCCEEE Q ss_conf 9997588678999999986299728999965300786006677-4799899993898---3789999998612-584898 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDL-LNAADVSILCLPD---VASLEIIQLIKKN-GINSRI 78 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~-~~~~Divf~a~p~---~~s~~~~~~~~~~-g~~~~v 78 (311) +-|-||+|-.|.++.+.|.++- .++...+.++..-++..++. ..+.++.++.++- +...+++..+.+. |.--.+ T Consensus 8 ~lITGgs~GIG~a~a~~la~~G-~~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iDil 86 (246) T PRK05653 8 ALVTGASRGIGRAIALRLAADG-ARVVIYDSNEEAAEALAEELRAAGGEAALLVFDVTDEAAVRALIEAAVERFGGLDVL 86 (246) T ss_pred EEEECCCCHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEE T ss_conf 9993897589999999999879-999999799999999999999659948999972899999999999999974998699 Q ss_pred ECCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 227630355543110021000477652 Q gi|254780294|r 79 IDTSTAHRIAPGWVYGFPEMDKSQKEK 105 (311) Q Consensus 79 id~ss~~R~~~~vpl~vPEvN~~~~~~ 105 (311) |.|++.+... -+.|...+..+. T Consensus 87 vnnAg~~~~~-----~~~~~~~~~~~~ 108 (246) T PRK05653 87 VNNAGITRDA-----LLPRMSEEDWDR 108 (246) T ss_pred EECCCCCCCC-----CCHHCCHHHHHH T ss_conf 9899999998-----801399999999 No 318 >PRK05868 hypothetical protein; Validated Probab=75.37 E-value=5.1 Score=19.34 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=26.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 907999758867899999998629972899996 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) |.||.|+|| |-.|..+--.|.++ -++++.+- T Consensus 1 ~~kVlIvGa-GiAGlalA~~L~r~-G~~VtV~E 31 (372) T PRK05868 1 MKTVLVSGA-SVAGTAAAYWLGRH-GYSVTMVE 31 (372) T ss_pred CCEEEEECC-CHHHHHHHHHHHHC-CCCEEEEE T ss_conf 999999898-88999999999858-99889995 No 319 >TIGR00232 tktlase_bact transketolase; InterPro: IPR005478 Transketolase (EC 2.2.1.1) (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. This group includes two proteins from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous. ; GO: 0004802 transketolase activity. Probab=75.00 E-value=5.9 Score=18.95 Aligned_cols=27 Identities=11% Similarity=0.138 Sum_probs=15.4 Q ss_pred CCCCEEEEEECCCCCCCCCCCHHCCCC Q ss_conf 565026765123333561000000134 Q gi|254780294|r 137 DRYPITINAVSGYTGGGKKLISRMEQK 163 (311) Q Consensus 137 ~~~~~~~~~~sg~sgaG~~~~~~~~~~ 163 (311) +-.-|.+.|.-|.+-..+++....|.. T Consensus 234 KPTlI~v~T~IGfGsp~~~g~~~~HGa 260 (675) T TIGR00232 234 KPTLIEVKTTIGFGSPNKEGTEGVHGA 260 (675) T ss_pred CCCEEEEEEEECCCCCCCCCCCCCCCC T ss_conf 971689987750368777888667888 No 320 >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Probab=74.96 E-value=6 Score=18.92 Aligned_cols=31 Identities=10% Similarity=0.220 Sum_probs=21.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-------CCEEEEEEE Q ss_conf 07999758867899999998629-------972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-------KDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-------p~~~l~~l~ 33 (311) ++|.|+|. |.||.+|++++.+. ..++++.+. T Consensus 459 i~v~l~G~-G~VG~~ll~qi~~q~~~l~~~~~i~l~v~g 496 (810) T PRK09466 459 IGLVLFGK-GNIGSRWLELFAREQSTLSARTGFEFVLVG 496 (810) T ss_pred EEEEEEEC-CHHHHHHHHHHHHHHHHHHHHCCCCEEEEE T ss_conf 77999825-728899999999999998875097379999 No 321 >COG3349 Uncharacterized conserved protein [Function unknown] Probab=74.57 E-value=6.1 Score=18.85 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=31.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC Q ss_conf 07999758867899999998629972899996530078600 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~ 42 (311) .||+|+|| |+.|..--..|.+.+ .+++.+-+....|-++ T Consensus 1 ~rVai~Ga-G~AgL~~a~~La~~g-~~vt~~ea~~~~GGk~ 39 (485) T COG3349 1 MRVAIAGA-GLAGLAAAYELADAG-YDVTLYEARDRLGGKV 39 (485) T ss_pred CEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCCCCCCEE T ss_conf 92899746-278889999998689-8539984267668613 No 322 >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional Probab=74.42 E-value=6.2 Score=18.83 Aligned_cols=37 Identities=14% Similarity=0.177 Sum_probs=27.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) +||||||+ |=.|..--..|... -.+++.+-.....|- T Consensus 440 kKVAVIGs-GPAGLsaA~~La~~-G~~VtVFE~~~~~GG 476 (760) T PRK12778 440 IKVAVIGS-GPAGLSFAGDMAKY-GYDVTVFEALHEIGG 476 (760) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCCC T ss_conf 98999897-78999999999977-990699805888897 No 323 >TIGR00065 ftsZ cell division protein FtsZ; InterPro: IPR000158 In bacteria, FtsZ , , is an essential cell division protein which appears to be involved in the initiation of this event. It assembles into a cytokinetic ring on the inner surface of the cytoplasmic membrane at the place where division will occur. The ring serves as a scaffold that is disassembled when septation is completed. FtsZ ring formation is initiated at a single site on one side of the bacterium and appears to grow bidirectionally. In Escherichia coli, MinCD IPR005526 from INTERPRO, encoded by the MinB locus, form a complex which appears to block the formation of FtsZ rings at the cell poles, at the ancient mid cell division sites, whilst MinE, encoded at the same locus, specifically prevents the action of MinCD at mid cell. FtsZ is a GTP binding protein PDOC00199 from PROSITEDOC with a GTPase activity. It undergoes GTP-dependent polymerization into filaments (or tubules) that seem to form a cytoskeleton involved in septum synthesis. The structure and the properties of FtsZ clearly provide it with the capacity for the cytoskeletal, perhaps motor role, necessary for "contraction" along the division plane. In addition, however, the FtsZ ring structure provides the framework for the recruitment or assembly of the ten or so membrane and cytoplasmic proteins, uniquely required for cell division in E. coli or Bacillus subtilis, some of which are required for biogenesis of the new hemispherical poles of the two daughter cells. FtsZ can polymerize into various structures, for example a single linear polymer of FtsZ monomers, called a protofilament. Protofilaments can associate laterally to form pairs (sometimes called thick filaments, bundles (ill-defined linear associations of multiple protofilaments or thick filaments, sheets (parallel or anti-parallel two-dimensional associations of thick filaments and tubes (anti-parallel associations of thick filaments in a circular fashion to form a tubular structure). In addition, small circles of FtsZ monomers (a short protofilament bent around to join itself, apparently head to tail) have been observed and termed mini-rings. FtsZ is a protein of about 400 residues which is well conserved across bacterial species and which is also present in the chloroplast of plants as well as in archaebacteria . FtsZ shows structural similarity with eukaryotic tubulins. This similarity is probably both evolutionary and functionally significant.; GO: 0005525 GTP binding, 0005737 cytoplasm. Probab=74.36 E-value=6.2 Score=18.82 Aligned_cols=141 Identities=16% Similarity=0.126 Sum_probs=80.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEE---EEEEECC---------CCCCCCC------C-------------------- Q ss_conf 079997588678999999986299728---9999653---------0078600------6-------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLC---LLSIPCE---------ERHNLRY------R-------------------- 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~---l~~l~s~---------~~ag~~~------~-------------------- 43 (311) .||.+||.=|--+=..-|+++.||.-. +.++|-. .+|.+++ . T Consensus 18 akI~ViGvGGgGnN~v~rm~~~~p~l~~~g~~fiA~NTD~Q~L~~~~~A~~kilIG~~~TrGLGAGG~P~iG~~AAees~ 97 (365) T TIGR00065 18 AKIKVIGVGGGGNNAVNRMVEEYPELGVEGVEFIAINTDAQHLKTTKYAPKKILIGKKLTRGLGAGGNPEIGRKAAEESR 97 (365) T ss_pred EEEEEEEECCCCHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 28999985588235899998705532237626999748378541155624135615733556767998388899989889 Q ss_pred ---HHHHCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH-----HHCCCCCCHHHHHHCCCC Q ss_conf ---6774799899993------89837899999986125848982276303555431-----100210004776520496 Q gi|254780294|r 44 ---EDLLNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGW-----VYGFPEMDKSQKEKIRSA 109 (311) Q Consensus 44 ---~~~~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v-----pl~vPEvN~~~~~~~~~~ 109 (311) +..+++.|.||.+ ++.+.+-=+++.+.+.|+ ..|==-+..|+++-.. .-++-++++ .-.+ T Consensus 98 d~i~~~l~GaDmVFitAGmGGGTGTGAAPVvA~~AK~~Ga-LTvavVT~PF~~EG~kr~~~A~~Gl~~L~~-----~~Dt 171 (365) T TIGR00065 98 DEIRELLEGADMVFITAGMGGGTGTGAAPVVAKIAKELGA-LTVAVVTKPFKFEGKKRRKKAEEGLERLKQ-----AVDT 171 (365) T ss_pred HHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHCCE-EEEEEECCCCCCHHHHHHHHHHHHHHHHHH-----HCCE T ss_conf 9999970388818997258668666635789999975790-699984287410158999999987898765-----5684 Q ss_pred EEEECCCCCCCCCHHHH-HHHHHHCCCCCCCCEEEEEECCCCCC Q ss_conf 07725842113311247-88888503455650267651233335 Q gi|254780294|r 110 RYITNPGCYATGAIAIL-RPLRKAKLLPDRYPITINAVSGYTGG 152 (311) Q Consensus 110 ~iIanPnC~~t~~~laL-~PL~~~~~i~~~~~~~~~~~sg~sga 152 (311) +|==||=- .--+++= .||.++|..- .-+..++++|.|.- T Consensus 172 -~ivIPNdk-LL~v~p~~~p~~~AF~~A--D~vL~~aVkGI~el 211 (365) T TIGR00065 172 -LIVIPNDK-LLEVVPNNLPLNDAFKVA--DDVLRRAVKGISEL 211 (365) T ss_pred -EEEECCHH-HHHHCCCCCCHHHHHHHH--HHHHHHHCCCHHHH T ss_conf -78826646-888606898889999999--99999750264788 No 324 >PRK06823 ornithine cyclodeaminase; Validated Probab=74.26 E-value=5.9 Score=18.95 Aligned_cols=14 Identities=14% Similarity=0.100 Sum_probs=6.2 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 13689999999987 Q gi|254780294|r 294 KGASGAAIQNMDLL 307 (311) Q Consensus 294 KGAAgnAVQn~nlm 307 (311) -|-|.|=+-.+... T Consensus 296 vG~a~qDla~A~~V 309 (315) T PRK06823 296 TGVAIQDVQIAKGI 309 (315) T ss_pred CCHHHHHHHHHHHH T ss_conf 89799999999999 No 325 >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. Probab=74.18 E-value=6.3 Score=18.79 Aligned_cols=80 Identities=16% Similarity=0.187 Sum_probs=51.9 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------------C--CCC------------------------ Q ss_conf 79997588678999999986299728999965300---------------7--860------------------------ Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------------H--NLR------------------------ 41 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------------a--g~~------------------------ 41 (311) |+-|+|| |.-|-...+.|..--...++++.+..= + |+. T Consensus 1 kvLllGa-GtLGc~var~L~~~GV~~it~VD~~~Vs~SN~~RQ~Lf~~~D~~~g~~Ka~aAa~~Lk~I~P~v~a~G~~l~ 79 (307) T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLS 79 (307) T ss_pred CEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCEEECCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHCCCCCEEEEEEE T ss_conf 9799857-752069999999836985899849988556622356763666518980799999999986999830579972 Q ss_pred -------CC--------------HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCC Q ss_conf -------06--------------67747998999938983789999998612584898227630 Q gi|254780294|r 42 -------YR--------------EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 42 -------~~--------------~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~ 84 (311) +. ++..++.|++|+-++.-.|+ |.|.+..+-.+..+|..+-- T Consensus 80 IPMpGH~v~~~~~~~~~~d~~~L~~LI~~HDvvFLLtDSRESR-WLPTll~a~~~Ki~InaALG 142 (307) T cd01486 80 IPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESR-WLPTLLSAAKNKLVINAALG 142 (307) T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHH-HHHHHHHHCCCCEEEEEEEC T ss_conf 5789794776678999999999999998678999932660430-56789873368658996405 No 326 >TIGR03450 mycothiol_INO1 inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid. Probab=73.50 E-value=6.5 Score=18.69 Aligned_cols=81 Identities=12% Similarity=0.127 Sum_probs=48.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CC--------------EEEEEEE----CCCCCCCCCCHHHH---------- Q ss_conf 07999758867899999998629------97--------------2899996----53007860066774---------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KD--------------LCLLSIP----CEERHNLRYREDLL---------- 47 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~--------------~~l~~l~----s~~~ag~~~~~~~~---------- 47 (311) +||||+|. |++..-|++=++.. ++ -+|..++ .++..|+.+++..| T Consensus 1 IrVaIvGv-GncASslvqGieyyk~~~~~~~v~Glm~~~iggy~v~DIeiVaafDVD~~KVGkdlseAi~~~pN~~~~~~ 79 (351) T TIGR03450 1 VRVAIVGV-GNCASSLVQGVEYYYNADPTSTVPGLMHVQFGPYHVGDVEFVAAFDVDAKKVGFDLSDAIFASENNTIKIA 79 (351) T ss_pred CEEEEEEC-CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHCCCCCCCCCC T ss_conf 95999913-07899999999999638964566773002247867444699999732704047769999740689864217 Q ss_pred ------------------------------------------CCCCEEEECCCCH---HHHHHHHHHHHCCCCEEEECCC Q ss_conf ------------------------------------------7998999938983---7899999986125848982276 Q gi|254780294|r 48 ------------------------------------------NAADVSILCLPDV---ASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 48 ------------------------------------------~~~Divf~a~p~~---~s~~~~~~~~~~g~~~~vid~s 82 (311) .++|+++.-+|-+ .++-|+..+.++|+. .|..- T Consensus 80 dvp~~gv~V~~G~~lDG~~~~~~~~i~~~~~~~~Dvv~~lk~~~~dVlvnylPvGse~At~~YA~~aL~AG~a--FVN~i 157 (351) T TIGR03450 80 DVPPTGVTVQRGPTLDGLGKYYRDTIEESDAEPVDVVQALKDAKVDVLVSYLPVGSEEADKFYAQCAIDAGVA--FVNAL 157 (351) T ss_pred CCCCCCCEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC--EECCC T ss_conf 8888798885568756534455505666533536699999862874689715768669999999988984981--78335 Q ss_pred CCH Q ss_conf 303 Q gi|254780294|r 83 TAH 85 (311) Q Consensus 83 s~~ 85 (311) ..| T Consensus 158 P~f 160 (351) T TIGR03450 158 PVF 160 (351) T ss_pred CHH T ss_conf 410 No 327 >pfam06408 consensus Probab=73.15 E-value=6.6 Score=18.64 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=54.1 Q ss_pred EEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCC-CC--------CCCC-----CH--------HHHCCC---CEEE Q ss_conf 7999758867899999998629---972899996530-07--------8600-----66--------774799---8999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEE-RH--------NLRY-----RE--------DLLNAA---DVSI 54 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~-~a--------g~~~-----~~--------~~~~~~---Divf 54 (311) ||-+||- |-+||-++-||.+| +..+++.+.-.. .. |-++ .. ..+++. |+.+ T Consensus 3 ~Iv~iGf-GSIgq~~LPLl~rH~~~~~~~Itiid~~d~~~~~~~~~~~Gi~fi~~~lT~eNy~~~L~~~L~~gg~gdflv 81 (471) T pfam06408 3 PILMIGF-GSIGRGTLPLIERHFKFDRSNIVVIDPRDTKKDRKLLAEKGIRFVQTAVTKDNYKNVLDPLLKGGGGQGFCV 81 (471) T ss_pred CEEEECC-CHHHHHHHHHHHHHCCCCHHHEEEECCCCCHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCCEEE T ss_conf 7799875-716742067888760788789899767875456677875697688614587889999999862677788799 Q ss_pred ECCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 93898378999999861258489822763 Q gi|254780294|r 55 LCLPDVASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 55 ~a~p~~~s~~~~~~~~~~g~~~~vid~ss 83 (311) --.-+--|.+....+.+.| +.++|.|- T Consensus 82 nLSvniss~~ii~~C~e~G--vlYldT~i 108 (471) T pfam06408 82 NLSVDTSSLDLMRLCREHG--VLYVDTVV 108 (471) T ss_pred EEECCCCHHHHHHHHHHHC--CEEEECCC T ss_conf 8011578899999999809--87755440 No 328 >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Probab=72.62 E-value=6 Score=18.93 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=28.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC Q ss_conf 7999758867899999998629--9728999965300 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER 37 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ 37 (311) +|-|||+ |+.|....+.|.++ |..+++++.-++. T Consensus 1 hiVIvGg-G~aG~~~a~~L~~~~~~~~~ItLId~~~~ 36 (364) T TIGR03169 1 HLVLIGG-GHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364) T ss_pred CEEEECC-HHHHHHHHHHHCCCCCCCCEEEEECCCCC T ss_conf 9999996-09999999997041789983999999886 No 329 >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein Probab=72.48 E-value=6.9 Score=18.54 Aligned_cols=111 Identities=15% Similarity=0.160 Sum_probs=55.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHC-C---CCEEEEEEECC--CC--------------CCCCC-------CHHHHCCCCEEE Q ss_conf 0799975886789999999862-9---97289999653--00--------------78600-------667747998999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQ-R---KDLCLLSIPCE--ER--------------HNLRY-------REDLLNAADVSI 54 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~-h---p~~~l~~l~s~--~~--------------ag~~~-------~~~~~~~~Divf 54 (311) +||+|+||-+..-..+++=|.. . +..++.+..=. ++ .|..+ .++.+.++|+|| T Consensus 1 mKI~iIGaGS~~tp~lv~~l~~~~~~l~~~ei~L~DID~~~rL~~~~~la~~~~~~~~~~~~v~~ttd~~eAl~gADfVi 80 (419) T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEE T ss_conf 97999897466558999999845434898889998998599999999999999996099808999679999836999999 Q ss_pred ECC--CCHHHHHHH-HHHHHCCCCEEEE--CC---CCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 938--983789999-9986125848982--27---630355543110021000477652049607725842 Q gi|254780294|r 55 LCL--PDVASLEII-QLIKKNGINSRII--DT---STAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 55 ~a~--p~~~s~~~~-~~~~~~g~~~~vi--d~---ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) .+. +...++..- ..-.+.| ++ |. ++-||----+|..+ |+-.+-.+.-++++++---|. T Consensus 81 ~~irvGg~~~r~~De~Ip~kyG----vigQET~G~GG~~~alRtiP~~l-~ia~~i~e~cP~AwliNytNP 146 (419) T cd05296 81 TQIRVGGLEARALDERIPLKHG----VIGQETTGAGGFAKALRTIPVIL-DIAEDVEELAPDAWLINFTNP 146 (419) T ss_pred EEEEECCCCHHHHHHHHHHHCC----CCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHCCCCEEEECCCH T ss_conf 9873379307677654387649----76534767479998762289999-999999986998389973787 No 330 >PRK06046 alanine dehydrogenase; Validated Probab=72.31 E-value=6.9 Score=18.52 Aligned_cols=12 Identities=8% Similarity=0.133 Sum_probs=4.4 Q ss_pred HHHHHHHHHHHH Q ss_conf 136899999999 Q gi|254780294|r 294 KGASGAAIQNMD 305 (311) Q Consensus 294 KGAAgnAVQn~n 305 (311) -|-|.+=+-.+. T Consensus 297 vG~a~~Dla~a~ 308 (326) T PRK06046 297 TGLAIQDVATAH 308 (326) T ss_pred CCHHHHHHHHHH T ss_conf 895999999999 No 331 >PRK06217 hypothetical protein; Validated Probab=72.10 E-value=3.6 Score=20.26 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=26.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEE Q ss_conf 907999758867899999998629---9728999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLS 31 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~ 31 (311) |.||-|+|++|-.=..|-+.|.++ |++++-- T Consensus 1 m~rI~i~G~sGsGkSTla~~La~~l~~~~~~lD~ 34 (185) T PRK06217 1 MMRIHITGASGSGTTTLGAALAEALDLPHLDTDD 34 (185) T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCEEECCC T ss_conf 9679997899887899999999975989686455 No 332 >TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model. Probab=71.80 E-value=7.1 Score=18.45 Aligned_cols=77 Identities=14% Similarity=0.292 Sum_probs=49.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCC--EEEEEEE-CCCCCCCCCC--------H-----HHHCCCCEEEECCCCHHHH-- Q ss_conf 0799975886789999999862997--2899996-5300786006--------6-----7747998999938983789-- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKD--LCLLSIP-CEERHNLRYR--------E-----DLLNAADVSILCLPDVASL-- 63 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~--~~l~~l~-s~~~ag~~~~--------~-----~~~~~~Divf~a~p~~~s~-- 63 (311) .||.|+|+ |-.|+++.+-|.+||. +++..+. .+.+.+.... + ..-.++|-|++|+|..... T Consensus 126 rrvlIIG~-g~~~~~l~~~l~~~~~~g~~vvG~~dd~~~~~~~~~~~p~lg~~~~l~~~i~~~~ideViIa~p~~~~~~~ 204 (445) T TIGR03025 126 RRVLIVGT-GELAEELAAALSRNPDLGYRVVGFVDDRPEDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLSEEARI 204 (445) T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 23999908-48999999999828468848999977875444556788601889999999997699889996586776899 Q ss_pred -HHHHHHHHCCCCEEEE Q ss_conf -9999986125848982 Q gi|254780294|r 64 -EIIQLIKKNGINSRII 79 (311) Q Consensus 64 -~~~~~~~~~g~~~~vi 79 (311) +....+...|..++++ T Consensus 205 ~~~l~~~~~~~v~v~~i 221 (445) T TIGR03025 205 LELLLQLSDLGVDVRLV 221 (445) T ss_pred HHHHHHHHHCCCEEEEE T ss_conf 99999987559789995 No 333 >PRK07432 5'-methylthioadenosine phosphorylase; Provisional Probab=71.71 E-value=4.1 Score=19.93 Aligned_cols=89 Identities=19% Similarity=0.209 Sum_probs=48.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHHH-HHHHHHHCC Q ss_conf 799975886789999999862997289999653007860066774799899993--------89837899-999986125 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASLE-IIQLIKKNG 73 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~~-~~~~~~~~g 73 (311) ||||+|.||+-.. ..|.+..++++..-.+..|.- +..-.+++.+++|++ .|+++--. -.-.+.+.| T Consensus 5 kIGIIgGSGL~~l---~~l~~~~~~~v~Tp~G~ps~~--l~~G~l~g~~V~fL~RHGr~H~~~P~~inyRANI~ALk~LG 79 (290) T PRK07432 5 KIGIIGGSGLYKM---EALKDVEEVQLETPFGSPSDA--LIVGTLDGVRVAFLARHGRNHHLLPTELPFRANIYAMKQLG 79 (290) T ss_pred CEEEEECCCCCCH---HHCCCCEEEEEECCCCCCCCC--EEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 2999907776743---335775189811889899776--79999999999998478998985862664177799998669 Q ss_pred CCEEEECCCCCHHHHHHHH---HCCCC Q ss_conf 8489822763035554311---00210 Q gi|254780294|r 74 INSRIIDTSTAHRIAPGWV---YGFPE 97 (311) Q Consensus 74 ~~~~vid~ss~~R~~~~vp---l~vPE 97 (311) +. .+|.-+++=-+.++++ +++|. T Consensus 80 v~-~ii~tnAvGsL~~~~~PGdlvi~d 105 (290) T PRK07432 80 VE-YLISASAVGSLKEEAKPLDMVVPD 105 (290) T ss_pred CC-EEEEECCEEECCCCCCCCCEEECC T ss_conf 85-699961365236668997288404 No 334 >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process. Probab=71.62 E-value=4.6 Score=19.61 Aligned_cols=41 Identities=15% Similarity=0.115 Sum_probs=33.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE-EEEEEEC--CC--CCCCCCC Q ss_conf 07999758867899999998629972-8999965--30--0786006 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL-CLLSIPC--EE--RHNLRYR 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~-~l~~l~s--~~--~ag~~~~ 43 (311) +||.|+|| |+||..---+|++---. |+.++.= =+ -.||.++ T Consensus 2 kKisvIGA-GfvGaTTAf~lA~KeLard~VLlDiPqvEg~pqGKALD 47 (308) T TIGR01763 2 KKISVIGA-GFVGATTAFLLAEKELARDVVLLDIPQVEGVPQGKALD 47 (308) T ss_pred CEEEEECC-CCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCHHH T ss_conf 55899706-86125899999867406716898505558688863322 No 335 >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] Probab=71.61 E-value=7.2 Score=18.42 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=42.7 Q ss_pred CCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 86789999999862997289999653007860066774799899993898378999999861258489822763 Q gi|254780294|r 10 HGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 10 TG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss 83 (311) +.-.-.+..+.|.++ |++........... ...+...++|.++.......+.+...++ . ..++|.+.+ T Consensus 8 ~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~~~l~~~--p--~LKlIa~~~ 74 (324) T COG1052 8 TRKLPPEVLERLKEK--FEVERYEDDLTPDT-ELAERLKDADAVITFVNDRIDAEVLEKL--P--GLKLIATRS 74 (324) T ss_pred CCCCCHHHHHHHCCC--EEEEEECCCCCCCC-HHHHHHCCCCEEEECCCCCCCHHHHHHC--C--CCEEEEEEC T ss_conf 355797899873135--78999315776530-5788864786999726787589999748--8--936999924 No 336 >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] Probab=71.49 E-value=7.2 Score=18.40 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=50.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------------------------------HHH Q ss_conf 9079997588678999999986299728999965300786006----------------------------------677 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------------------------------EDL 46 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------------------------------~~~ 46 (311) |.+|-++|+ |-|.-.|--.|..|-..+|-.+--.+..++++. ... T Consensus 4 m~~vLllGt-GpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~ 82 (431) T COG4408 4 MLPVLLLGT-GPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQA 82 (431) T ss_pred CCCEEEEEC-CCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHCCCEEHHHHHHHHHHH T ss_conf 532357605-7177899999986057154035798730678999982498599972668888641765552887419875 Q ss_pred HCCCCEEEECCCCHHHHHHH----------------------------HHHHHCCCCEEEECCCCCHHH Q ss_conf 47998999938983789999----------------------------998612584898227630355 Q gi|254780294|r 47 LNAADVSILCLPDVASLEII----------------------------QLIKKNGINSRIIDTSTAHRI 87 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~~~----------------------------~~~~~~g~~~~vid~ss~~R~ 87 (311) ..+-|-+++|.|++.=.+.. ....+.|+++-||+.|+.|-- T Consensus 83 ~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~d 151 (431) T COG4408 83 VGDWQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYAD 151 (431) T ss_pred HCHHHEEEEEEECHHHHHHHHCCCHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEEEHHCCC T ss_conf 140446888951088999996389868515547999624456337999987660898069975011154 No 337 >pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function. Probab=71.36 E-value=7.3 Score=18.38 Aligned_cols=84 Identities=18% Similarity=0.222 Sum_probs=52.4 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE---CCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 79997588678999999986299728999965300786006677479989999---389837899999986125848982 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL---CLPDVASLEIIQLIKKNGINSRII 79 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~---a~p~~~s~~~~~~~~~~g~~~~vi 79 (311) +|.|||+.----..+.++++++-.-.+.+-.+.+...+++ +....++|+|++ +..|.....+-..+...|..++.. T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l-~~~i~~aDlVI~~td~vsH~~~~~vK~~akk~~~p~v~~ 79 (96) T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKI-PALLKKADLVIVFTDCVSHDAMWRVKEEAKKRGIPVVFS 79 (96) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHH-HHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE T ss_conf 9999958556789999999983998999658987335567-750589888999717668799999999999849978997 Q ss_pred CCCCCHHH Q ss_conf 27630355 Q gi|254780294|r 80 DTSTAHRI 87 (311) Q Consensus 80 d~ss~~R~ 87 (311) ..++.=.+ T Consensus 80 ~s~s~~~l 87 (96) T pfam10087 80 RSRSLSAL 87 (96) T ss_pred CCCCHHHH T ss_conf 68749999 No 338 >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] Probab=71.30 E-value=7.3 Score=18.38 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 90799975886789999999862997289999653 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |+.|+|+|| |.+|..+=-.|.++. .++..+-.. T Consensus 2 ~~dV~IvGa-G~aGl~lA~~L~~~G-~~V~liE~~ 34 (387) T COG0654 2 MLDVAIVGA-GPAGLALALALARAG-LDVTLLERA 34 (387) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCC-CCEEEEECC T ss_conf 854999997-899999999998289-968999077 No 339 >PRK06753 hypothetical protein; Provisional Probab=71.21 E-value=6.6 Score=18.67 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=24.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 07999758867899999998629972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) .||+|||| |.+|..+--.|.++ .++++.+- T Consensus 1 mkV~IVGa-GiaGL~~A~~L~~~-G~~v~V~E 30 (373) T PRK06753 1 MKIAIIGA-GIGGLTAAALLQEQ-GHTVKVFE 30 (373) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEC T ss_conf 98999994-58999999999977-99999988 No 340 >TIGR01408 Ube1 ubiquitin-activating enzyme E1; InterPro: IPR000011 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation , , . Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade . The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction.; GO: 0008641 small protein activating enzyme activity, 0006464 protein modification process, 0006512 ubiquitin cycle. Probab=70.97 E-value=7.4 Score=18.34 Aligned_cols=66 Identities=15% Similarity=0.222 Sum_probs=45.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-----C-CEEEE---------------EEECCCCCCC-------------------- Q ss_conf 07999758867899999998629-----9-72899---------------9965300786-------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-----K-DLCLL---------------SIPCEERHNL-------------------- 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-----p-~~~l~---------------~l~s~~~ag~-------------------- 40 (311) .+|-.||+ |+.|-||++=++-= . ...|+ +|.-.+..|| T Consensus 432 l~~FlVG~-GAiGCEmLKN~AlmGV~tg~e~G~itVTD~D~IEKSNLnRQFLFRp~~igk~KS~~Aa~A~~~iNp~~~Gk 510 (1033) T TIGR01408 432 LKVFLVGA-GAIGCEMLKNLALMGVATGKEKGKITVTDDDLIEKSNLNRQFLFRPRDIGKAKSEVAADAVAVINPRLKGK 510 (1033) T ss_pred CCEEEEEC-CHHHHHHHHHHHHHCEECCCCCCCEEECCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCC T ss_conf 77258715-45678899878871300156665357626751210256511124742035302568988898846776531 Q ss_pred --------------CCCHHHHCCCCEEEECCCCHHHHHHHHH Q ss_conf --------------0066774799899993898378999999 Q gi|254780294|r 41 --------------RYREDLLNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 41 --------------~~~~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311) -|.|+++++.|+|.-||++-.+|-|+-. T Consensus 511 I~a~~nrVgpetE~if~DeF~ekl~vv~nALDNVeAR~YVDs 552 (1033) T TIGR01408 511 IEAYQNRVGPETETIFDDEFYEKLDVVVNALDNVEARLYVDS 552 (1033) T ss_pred HHHHHCCCCCCCCCCCCCHHEECCEEEEECCCCCHHHHHHHH T ss_conf 243322506566764373010034126750102001122212 No 341 >KOG1221 consensus Probab=70.21 E-value=7.7 Score=18.23 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=25.6 Q ss_pred EEEEECCCCHHHHHHHHHHHC-CCCEEEEEEECCCCCCC Q ss_conf 799975886789999999862-99728999965300786 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQ-RKDLCLLSIPCEERHNL 40 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~-hp~~~l~~l~s~~~ag~ 40 (311) .|-|-||||+.|..+++-|.. .|.+.-..+.=+.+.|+ T Consensus 14 ~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~ 52 (467) T KOG1221 14 TIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGK 52 (467) T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCC T ss_conf 599972763457899999985076765699998347898 No 342 >PRK06407 ornithine cyclodeaminase; Provisional Probab=69.99 E-value=7.8 Score=18.20 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHCC Q ss_conf 13689999999987238 Q gi|254780294|r 294 KGASGAAIQNMDLLLSS 310 (311) Q Consensus 294 KGAAgnAVQn~nlm~g~ 310 (311) -|-|.|=+-.+++.+-. T Consensus 282 vG~a~qDla~A~~v~~~ 298 (302) T PRK06407 282 MGIGLEDIAAGYLVLKN 298 (302) T ss_pred CCHHHHHHHHHHHHHHH T ss_conf 88399999999999996 No 343 >cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial Probab=69.87 E-value=7.9 Score=18.18 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=39.9 Q ss_pred CEEEEECCCCHHHHHHHHH-HHCC-CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCH Q ss_conf 0799975886789999999-8629-972899996530078600667747998999938983 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSR-IVQR-KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDV 60 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~l-L~~h-p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~ 60 (311) +|+.||-.+|+.=.+|++. |.+. |..++....|.+. +....+.++|++|+-.|-. T Consensus 1 ~~vliVC~~G~gts~lL~~kl~~~fp~i~~i~~~s~~~----~~~~~~~~~DlIiSTi~l~ 57 (85) T cd05568 1 KKALVVCPSGIGTSRLLKSKLKKLFPEIEIIDVISLRE----LEEVDLDDYDLIISTVPLE 57 (85) T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECHHH----HHHCCCCCCCEEEEECCCC T ss_conf 93999999998999999999998789967999750999----8743323687899941266 No 344 >PRK10360 DNA-binding transcriptional activator UhpA; Provisional Probab=69.34 E-value=8.1 Score=18.11 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=49.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHH Q ss_conf 90799975886789999999862997289999653007860066774799899993--898378999999861 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKK 71 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~ 71 (311) |+||.|+----++-.-|.++|...|.+++...+++...... ...-...|++++- +|..-..+....+.+ T Consensus 1 Mi~I~IvDDh~l~r~gl~~~l~~~~~~~vv~~~~~~~~~l~--~~~~~~~dvvllD~~mp~~~g~~~~~~l~~ 71 (196) T PRK10360 1 MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALA--GLPGRGVQVCICDISMPDISGLELLSQLPK 71 (196) T ss_pred CEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHH--HHHHCCCCEEEECCCCCCCCCHHHHHHHHC T ss_conf 91999987979999999999812999599999899999999--887449999998788788620779999843 No 345 >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process. Probab=69.17 E-value=8.1 Score=18.09 Aligned_cols=33 Identities=24% Similarity=0.345 Sum_probs=27.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC----CEEEEEEECCC Q ss_conf 79997588678999999986299----72899996530 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK----DLCLLSIPCEE 36 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp----~~~l~~l~s~~ 36 (311) .|+|||+ |+||..|=--|...+ ...+.++.... T Consensus 1 Di~IvGg-G~VG~~lA~aL~~~~~~~~~L~~~l~e~~~ 37 (445) T TIGR01988 1 DIVIVGG-GMVGLALALALASSGSRLKGLKVALIEAQP 37 (445) T ss_pred CEEEECC-CHHHHHHHHHHHCCCCCCCCCEEEEEECCC T ss_conf 9688847-388999999984186312473179960521 No 346 >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=68.86 E-value=8.2 Score=18.05 Aligned_cols=24 Identities=13% Similarity=0.314 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCC Q ss_conf 378999999861258489822763 Q gi|254780294|r 60 VASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 60 ~~s~~~~~~~~~~g~~~~vid~ss 83 (311) -+.-|++..+...|.++.+|+.+. T Consensus 168 ~ig~E~A~~~~~lG~~Vtiie~~~ 191 (441) T PRK08010 168 YIGVEFASMFANFGSKVTILEAAS 191 (441) T ss_pred HHHHHHHHHHHHCCCEEEEEECCC T ss_conf 899999999997598788970467 No 347 >COG3400 Uncharacterized protein conserved in bacteria [Function unknown] Probab=68.76 E-value=8.1 Score=18.11 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=35.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCC---CEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCC Q ss_conf 9079997588678999999986299---7289999653007860066774799899993898 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRK---DLCLLSIPCEERHNLRYREDLLNAADVSILCLPD 59 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp---~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~ 59 (311) |.+|+|+|- |-+..++++++..|. +|.....--+++-..+ ...+.+|+.+|.+.+ T Consensus 1 m~~I~iI~d-Gi~Ak~fLe~v~~~~~~~~f~~vv~~~qe~~~~~---~~~e~~~fh~fdaTs 58 (471) T COG3400 1 MKKIAIILD-GIVAKNFLELVLRHYSNHNFYIVVVKNQESLIPK---NYPETFAFHCFDATS 58 (471) T ss_pred CCEEEEEEE-CHHHHHHHHHHHHHHCCCEEEEEEEECHHHCCCC---CCCCEEEEEEECCCC T ss_conf 960799972-3889999999999862733999874025431423---583027999937743 No 348 >PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional Probab=67.59 E-value=8.8 Score=17.89 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=21.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC------CCEEEEEE Q ss_conf 07999758867899999998629------97289999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR------KDLCLLSI 32 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h------p~~~l~~l 32 (311) ++|.|+|. |.||.+|++++.+. ..++++.. T Consensus 466 i~i~l~G~-G~vG~~ll~qi~~q~~~l~~~~i~l~v~ 501 (817) T PRK09436 466 IDVFVIGV-GGVGGALLEQIKRQQQWLKKKHIDLRVC 501 (817) T ss_pred EEEEEEEC-CHHHHHHHHHHHHHHHHHHHCCCEEEEE T ss_conf 77999844-7287999999999999885269449999 No 349 >KOG2012 consensus Probab=67.42 E-value=4.4 Score=19.74 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=44.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-------CCEEE-------------EEEECCCCCCC--------------------- Q ss_conf 07999758867899999998629-------97289-------------99965300786--------------------- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-------KDLCL-------------LSIPCEERHNL--------------------- 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-------p~~~l-------------~~l~s~~~ag~--------------------- 40 (311) .|+-+||| |+.|-||++-++-- -.+.+ .+|.-....|+ T Consensus 431 ~~~FlVGa-GAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~KSe~AA~A~~~mNp~l~I~a 509 (1013) T KOG2012 431 QKVFLVGA-GAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPKSEVAAAAARGMNPDLNIIA 509 (1013) T ss_pred CCEEEECC-CHHHHHHHHHHHHEEECCCCCCCEEEECCCHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEE T ss_conf 84899736-31517998766650120179872688451166431543101024544685077899999974297715521 Q ss_pred -----------CCCHHHHCCCCEEEECCCCHHHHHHHHH Q ss_conf -----------0066774799899993898378999999 Q gi|254780294|r 41 -----------RYREDLLNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 41 -----------~~~~~~~~~~Divf~a~p~~~s~~~~~~ 68 (311) -+.+++|++.|+|--||++-.++.|+.. T Consensus 510 ~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~ 548 (1013) T KOG2012 510 LQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDR 548 (1013) T ss_pred HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHH T ss_conf 320468652131446677665788775302245654122 No 350 >PRK09009 C factor cell-cell signaling protein; Provisional Probab=67.33 E-value=8.9 Score=17.86 Aligned_cols=31 Identities=19% Similarity=0.359 Sum_probs=24.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEE Q ss_conf 07999758867899999998629-97289999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSI 32 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l 32 (311) .||-|.||++=.|+++.+.|.++ +...+... T Consensus 1 mnVLITGas~GIG~aia~~l~~~~~~~~v~~~ 32 (235) T PRK09009 1 MNILIVGGSGGIGKAMVKQLLETYPDATVHAT 32 (235) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 97999755639999999999856998099997 No 351 >PRK09564 coenzyme A disulfide reductase; Reviewed Probab=67.01 E-value=9 Score=17.82 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCC Q ss_conf 07999758867899999998629-972899996530 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEE 36 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~ 36 (311) .||.|||+ |..|.....-|.++ |..++..+..+. T Consensus 1 MkvVIIG~-G~AG~saA~~l~~~~~~~~I~v~e~~~ 35 (443) T PRK09564 1 MKIIIIGG-TAAGTSAAAKAKRLNKELEIVVYEKTD 35 (443) T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCCCEEEEECCC T ss_conf 96999996-099999999998149399999994889 No 352 >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process. Probab=66.54 E-value=5.4 Score=19.17 Aligned_cols=22 Identities=14% Similarity=0.264 Sum_probs=19.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC Q ss_conf 07999758867899999998629 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h 24 (311) .||.|||| ||.+-||-=+|+.- T Consensus 182 ~~~v~vGA-GYIAvELAGvLh~L 203 (475) T TIGR01421 182 KRVVIVGA-GYIAVELAGVLHGL 203 (475) T ss_pred CEEEEEEC-CHHHHHHHHHHHHC T ss_conf 71799907-38988888887312 No 353 >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed Probab=66.50 E-value=9.2 Score=17.76 Aligned_cols=86 Identities=9% Similarity=0.158 Sum_probs=56.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHHC Q ss_conf 0799975886789999999862997289999653007---86--------------00----------------667747 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLLN 48 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~~ 48 (311) .||||||| |.-|.-+-..+..+ -+++++..-+..+ |. ++ +-+.+. T Consensus 314 ~~v~ViGa-G~MG~GIA~~~a~a-G~~V~l~D~~~e~l~~g~~~~~~~~~~~v~~g~~~~~~~~~~l~ri~~~~~~~~l~ 391 (715) T PRK11730 314 KQAAVLGA-GIMGGGIAYQSASK-GVPVIMKDINQKALDLGMNEAAKLLNKQVERGRIDGLKMAGVLSTITPTLDYAGFK 391 (715) T ss_pred CEEEEECC-CCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHC T ss_conf 27999787-71079999999957-99579997899999999999999999998648998799999995687415402433 Q ss_pred CCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 9989999389837899--9999861-258489822763035554 Q gi|254780294|r 49 AADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 49 ~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) ++|+|+=|.+....-+ ....+.+ ...++..-+|+|....+. T Consensus 392 ~~DlVIEAV~E~l~~K~~vf~~l~~~~~~~aIlAsNTSsl~i~~ 435 (715) T PRK11730 392 DVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISL 435 (715) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH T ss_conf 58889985436588999999999865587538851576577899 No 354 >PRK09853 putative selenate reductase subunit YgfK; Provisional Probab=66.08 E-value=9.4 Score=17.70 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=24.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 07999758867899999998629972899996530078 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN 39 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag 39 (311) .||||||| |=.|..--..|... -.+++.+-.....| T Consensus 551 KKVAVIGs-GPAGLaAA~~Lar~-Gh~VTVFEk~~~~G 586 (1032) T PRK09853 551 HPVAVIGA-GPAGLAAGYFLARA-GHPVTVFEREENAG 586 (1032) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC T ss_conf 97999896-88999999999977-99369981589788 No 355 >PRK12831 putative oxidoreductase; Provisional Probab=65.79 E-value=9.5 Score=17.67 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=26.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCC Q ss_conf 079997588678999999986299728999965300786 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNL 40 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~ 40 (311) .||||||| |=-|..--.-|... -.+++.+-.....|- T Consensus 141 kkVAVIGs-GPAGLsaA~~La~~-G~~VtVfE~~~~~GG 177 (464) T PRK12831 141 KKVAVIGS-GPAGLTCAGDLAKK-GYDVTIFEALHEPGG 177 (464) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEECCCCCCCC T ss_conf 98999897-68999999999976-991799827888898 No 356 >KOG2742 consensus Probab=65.68 E-value=3.3 Score=20.50 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=59.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC----------C----CCCHHH-HCCCCEEEECCCCHHHHHHHHH Q ss_conf 999758867899999998629972899996530078----------6----006677-4799899993898378999999 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN----------L----RYREDL-LNAADVSILCLPDVASLEIIQL 68 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag----------~----~~~~~~-~~~~Divf~a~p~~~s~~~~~~ 68 (311) |||+|. |.--+.++-+|.+-| |++.++.++.++- + ++++.. -.++|+++.++|.....+++.+ T Consensus 5 v~v~GT-g~~arv~iP~l~e~~-f~v~A~w~Rt~~ea~a~aa~~~v~~~t~~~deiLl~~~vdlv~i~lpp~~~~eI~~k 82 (367) T KOG2742 5 VGVFGT-GIFARVLIPLLKEEG-FEVKAIWGRTKTEAKAKAAEMNVRKYTSRLDEILLDQDVDLVCISLPPPLHAEIVVK 82 (367) T ss_pred EEEECC-CHHHHHHHHHHHHCC-CHHHHHHCHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCEEEECCCCCCCEEEEEC T ss_conf 157415-714766524656335-007656341456777754133211105530054436774436751687401045640 Q ss_pred HHHCCCCEEEECCCC----CHHHHHH Q ss_conf 861258489822763----0355543 Q gi|254780294|r 69 IKKNGINSRIIDTST----AHRIAPG 90 (311) Q Consensus 69 ~~~~g~~~~vid~ss----~~R~~~~ 90 (311) ..-.|. .++.+.-. ++||-.. T Consensus 83 al~~Gk-~Vvcek~a~~~d~~k~~~~ 107 (367) T KOG2742 83 ALGIGK-HVVCEKPATNLDAAKMVVA 107 (367) T ss_pred CCCCCC-EEEECCCCCCHHHHHHHHH T ss_conf 235774-0785267754224566787 No 357 >PRK08931 5'-methylthioadenosine phosphorylase; Provisional Probab=65.34 E-value=2.7 Score=21.05 Aligned_cols=90 Identities=16% Similarity=0.114 Sum_probs=49.5 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHHHH-HHHHH Q ss_conf 907--99975886789999999862997289999653007860066774799899993--------89837899-99998 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVASLE-IIQLI 69 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s~~-~~~~~ 69 (311) |.| |||+|.||+-.- ..|.+....++..=.++.|. ++..-.+++.+++|++ .||.+--. -.-.+ T Consensus 1 m~~~~IgIIGGSGly~l---~~l~~~~~~~v~Tp~G~pS~--~i~~G~i~g~~v~fL~RHG~~H~i~P~~InyRANI~AL 75 (289) T PRK08931 1 MTKAVLGIIGGSGVYDI---DGLEDARWERVESPWGEPSD--ALLFGRLGGVPMVFLPRHGRGHRLSPSDINYRANIDAL 75 (289) T ss_pred CCCCEEEEECCCCCCCH---HHCCCCCEEEEECCCCCCCC--CEEEEEECCEEEEEEECCCCCCCCCCCCCCHHHHHHHH T ss_conf 98765999827775755---44667645886799989866--56999989989999817899999896557718999999 Q ss_pred HHCCCCEEEECCCCCHHHHHHHH---HCCC Q ss_conf 61258489822763035554311---0021 Q gi|254780294|r 70 KKNGINSRIIDTSTAHRIAPGWV---YGFP 96 (311) Q Consensus 70 ~~~g~~~~vid~ss~~R~~~~vp---l~vP 96 (311) .+.|.. .+|.-++.=-+.++++ +++| T Consensus 76 k~LGV~-~Iia~nAvGsL~~~~~PGdlVi~ 104 (289) T PRK08931 76 KRAGVT-DLVSLSACGSFKEELPPGTFVIV 104 (289) T ss_pred HHCCCC-EEEEECCEEECCCCCCCCCEEEC T ss_conf 985997-89982236660567899978711 No 358 >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al Probab=64.92 E-value=9.9 Score=17.57 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=32.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHH Q ss_conf 079997588678999999986299728999965300786006677479989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~ 64 (311) .++.++|+ |-+|+-+-++|...-.-++....+ |+++-|++.+.-.. T Consensus 24 ~~v~v~G~-G~vg~~ia~ll~~~~~k~V~~~d~----------------Di~v~~t~~~~~~~ 69 (86) T cd05191 24 KTVVVLGA-GEVGKGIAKLLADEGGKKVVLCDR----------------DILVTATPAGVPVL 69 (86) T ss_pred CEEEEECC-CCHHHHHHHHHHHHCCCEEEECCC----------------CEEEECCCCCCCCH T ss_conf 58999778-604289999999817970787155----------------52886057787127 No 359 >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=64.12 E-value=10 Score=17.48 Aligned_cols=74 Identities=12% Similarity=0.130 Sum_probs=44.8 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC-------CCC---CCHHHHCCCCEEEECCCC----HHHHHHHH Q ss_conf 0799975886789999999862997289999653007-------860---066774799899993898----37899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH-------NLR---YREDLLNAADVSILCLPD----VASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a-------g~~---~~~~~~~~~Divf~a~p~----~~s~~~~~ 67 (311) .||+|+|. |-.|.-..++|.++ ..++.....+... |.. +.+..+.++|.++.+-+= ......+. T Consensus 10 k~v~v~Gl-G~sG~s~a~~L~~~-G~~V~~~D~~~~~~~~~~~~g~~~~~~~~~~~~~~~~iV~SPGIp~~~p~~~~~v~ 87 (457) T PRK01390 10 KTVALFGL-GGSGLATARALKAG-GAEVIAWDDNPDSVAKAAAAGIATADLRTADWSQFAALVLSPGVPLTHPKPHWTVD 87 (457) T ss_pred CEEEEEEE-CHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHH T ss_conf 98999943-69999999999978-99799993992066899875983145541232038789999988865667319999 Q ss_pred HHHHCCCCEEEE Q ss_conf 986125848982 Q gi|254780294|r 68 LIKKNGINSRII 79 (311) Q Consensus 68 ~~~~~g~~~~vi 79 (311) ++.+.|. .|+ T Consensus 88 ~a~~~gi--~v~ 97 (457) T PRK01390 88 LARAAGV--EVI 97 (457) T ss_pred HHHHCCC--EEE T ss_conf 9998599--186 No 360 >KOG1496 consensus Probab=63.93 E-value=10 Score=17.45 Aligned_cols=68 Identities=19% Similarity=0.370 Sum_probs=47.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC----C--CEEEEEEECCCCCCC------CC----------------CHHHHCCCCEE Q ss_conf 07999758867899999998629----9--728999965300786------00----------------66774799899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR----K--DLCLLSIPCEERHNL------RY----------------REDLLNAADVS 53 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h----p--~~~l~~l~s~~~ag~------~~----------------~~~~~~~~Div 53 (311) +||.+-||.|..|--|+-.+.+- | -+.|+++......+- ++ ..+.|+++|++ T Consensus 5 irVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~PlL~~Vvattd~~~afkdv~~a 84 (332) T KOG1496 5 IRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALPLLKGVVATTDEVEAFKDVDVA 84 (332) T ss_pred EEEEEECCCCHHHHHHHHHHCCCEEECCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCEE T ss_conf 47875245520267878987274165699864899607815778888788777752316777654267766641567679 Q ss_pred EE--CCCCHHHHHHHHHH Q ss_conf 99--38983789999998 Q gi|254780294|r 54 IL--CLPDVASLEIIQLI 69 (311) Q Consensus 54 f~--a~p~~~s~~~~~~~ 69 (311) |+ +.|....++-...+ T Consensus 85 ilvGa~PR~eGMERkDll 102 (332) T KOG1496 85 ILVGAMPRREGMERKDLL 102 (332) T ss_pred EEECCCCCCCCCHHHHHH T ss_conf 896366665661166687 No 361 >cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. Probab=63.89 E-value=10 Score=17.45 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=57.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECCCC------------CCCCCC-----------------------HH Q ss_conf 079997588678999999986299-728999965300------------786006-----------------------67 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCEER------------HNLRYR-----------------------ED 45 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~~~------------ag~~~~-----------------------~~ 45 (311) .||.|+|-=|.-+-.+-++....+ ..++..+-.... .|+++. .+ T Consensus 1 ~kIkViGVGG~G~N~vn~m~~~~~~~v~~iaiNTD~q~L~~~~~~~ki~iG~~~t~GlGaGg~Pe~G~~AA~e~~~~I~~ 80 (304) T cd02201 1 AKIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPEVGRKAAEESREEIKE 80 (304) T ss_pred CCEEEEEECCCHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 94699987881299999999839998559999087999845999827970876568898888847999999988999999 Q ss_pred HHCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf 74799899993------8983789999998612584898227630355543 Q gi|254780294|r 46 LLNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG 90 (311) Q Consensus 46 ~~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~ 90 (311) .+++.|++|.+ ++.+.+.-.+..+++.|. ..|-=-+-.|+++-. T Consensus 81 ~l~~~d~vfi~AGmGGGTGTGaaPviA~~Ake~g~-LtvavVT~PF~~EG~ 130 (304) T cd02201 81 ALEGADMVFITAGMGGGTGTGAAPVIAKIAKEMGA-LTVAVVTKPFSFEGK 130 (304) T ss_pred HHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEEECCHHHHHH T ss_conf 97368769999425798663178999998866798-599999678577528 No 362 >COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism] Probab=63.61 E-value=10 Score=17.42 Aligned_cols=57 Identities=21% Similarity=0.160 Sum_probs=35.1 Q ss_pred CCEEEEECCCCHHHH-HHHHHHHCC---CCEEEEEEECCCCCCC---------------CC-------CHHHHCCCCEEE Q ss_conf 907999758867899-999998629---9728999965300786---------------00-------667747998999 Q gi|254780294|r 1 MYKIFIDGEHGTTGL-KIRSRIVQR---KDLCLLSIPCEERHNL---------------RY-------REDLLNAADVSI 54 (311) Q Consensus 1 M~kVaIvGATG~vG~-~li~lL~~h---p~~~l~~l~s~~~ag~---------------~~-------~~~~~~~~Divf 54 (311) +.||+|+||-.-.=- .+.-.|... |..++.+..-++..-+ .+ .++.++++|+|+ T Consensus 3 ~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~ei~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi 82 (442) T COG1486 3 KFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVI 82 (442) T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCEEE T ss_conf 73699989975314799998984175577666999838778899999999999996399858999458999844798899 Q ss_pred ECC Q ss_conf 938 Q gi|254780294|r 55 LCL 57 (311) Q Consensus 55 ~a~ 57 (311) .+. T Consensus 83 ~~~ 85 (442) T COG1486 83 TQI 85 (442) T ss_pred EEE T ss_conf 987 No 363 >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional Probab=63.39 E-value=11 Score=17.39 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=44.3 Q ss_pred CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCC---CCEEEECCC---CHHHHHHHHHHHH-C Q ss_conf 90799-97588678999999986299728999965300786006677479---989999389---8378999999861-2 Q gi|254780294|r 1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNA---ADVSILCLP---DVASLEIIQLIKK-N 72 (311) Q Consensus 1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~---~Divf~a~p---~~~s~~~~~~~~~-~ 72 (311) |-||+ |-||++=.|+.+-+.|.++ -.++...+.+...-.+..++...+ ..+.++..+ .+.-.++.....+ . T Consensus 1 mnKvalITG~s~GIG~aia~~la~~-Ga~V~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 79 (259) T PRK12384 1 MNKVAVVIGGGQTLGAFLCHGLAEE-GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIF 79 (259) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHH T ss_conf 9978999468868999999999987-999999979889999999999862488608999832799999999999999982 Q ss_pred CCCEEEECCCCCHHH Q ss_conf 584898227630355 Q gi|254780294|r 73 GINSRIIDTSTAHRI 87 (311) Q Consensus 73 g~~~~vid~ss~~R~ 87 (311) |.--.+|.|++.... T Consensus 80 G~iDilVnnAG~~~~ 94 (259) T PRK12384 80 GRVDLLVYSAGIAKA 94 (259) T ss_pred CCCCEEEECCCCCCC T ss_conf 997199989977788 No 364 >PRK07578 short chain dehydrogenase; Provisional Probab=63.28 E-value=11 Score=17.38 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=21.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC Q ss_conf 07999758867899999998629 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h 24 (311) .||-|.|||+=.|+++.+.|.++ T Consensus 1 MrVlVTGas~GIG~aia~~la~~ 23 (199) T PRK07578 1 MKILVIGASGTIGRAVVAELSAR 23 (199) T ss_pred CEEEEECCCCHHHHHHHHHHHCC T ss_conf 97999998748999999999679 No 365 >PRK08263 short chain dehydrogenase; Provisional Probab=63.16 E-value=11 Score=17.37 Aligned_cols=99 Identities=15% Similarity=0.112 Sum_probs=48.2 Q ss_pred CCEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHH-HHHHHHHHHH-CCCCEE Q ss_conf 90799-97588678999999986299728999965300786006677479989999389837-8999999861-258489 Q gi|254780294|r 1 MYKIF-IDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVA-SLEIIQLIKK-NGINSR 77 (311) Q Consensus 1 M~kVa-IvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~-s~~~~~~~~~-~g~~~~ 77 (311) |-||+ |-||+.=.|+++.+.|.++- ..+...+.+...-.++.+..-..+..+-+-+.+.. -.+.+....+ -|.--. T Consensus 2 ~gKv~lITGassGIG~a~A~~la~~G-~~Vv~~~R~~~~l~~l~~~~~~~~~~~~~Dvtd~~~v~~~v~~~~~~~G~iDi 80 (275) T PRK08263 2 MGKVWFITGASRGFGREWTEAALERG-DRVVATARDTATLADLAERYGDALLPLALDVTDRAAVFAAVEQAVKHFGRLDI 80 (275) T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCC-CEEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCE T ss_conf 89989994674399999999999879-98999979899999999975996799996489999999999999998499878 Q ss_pred EECCCCCHHHHHHHHHCCCCCCHHHHHH Q ss_conf 8227630355543110021000477652 Q gi|254780294|r 78 IIDTSTAHRIAPGWVYGFPEMDKSQKEK 105 (311) Q Consensus 78 vid~ss~~R~~~~vpl~vPEvN~~~~~~ 105 (311) +|.|++.....+ +-|+..+..+. T Consensus 81 LVNNAG~~~~~~-----~~e~~~~~~~~ 103 (275) T PRK08263 81 VVNNAGYGLFGM-----IEEVTESEARA 103 (275) T ss_pred EEECCCCCCCCC-----HHHCCHHHHHH T ss_conf 998886678887-----47699999999 No 366 >PRK06370 mercuric reductase; Validated Probab=62.69 E-value=11 Score=17.31 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=11.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC Q ss_conf 07999758867899999998629 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h 24 (311) |-|-|||+ |-.|...-..+.++ T Consensus 5 YDviVIG~-GpAG~~AA~~aa~~ 26 (459) T PRK06370 5 YDAVVIGA-GQAGPPLAARAAGL 26 (459) T ss_pred CCEEEECC-CHHHHHHHHHHHHC T ss_conf 75899998-88999999999968 No 367 >TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion. Probab=62.59 E-value=7.9 Score=18.15 Aligned_cols=81 Identities=12% Similarity=0.160 Sum_probs=47.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHH-CCCCEEEE Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861-25848982 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKK-NGINSRII 79 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~-~g~~~~vi 79 (311) |.+++|+|+ |++|.|+=+++++- -.+++.+.-++. .|+--..+.|.-....+.+ -| +.++ T Consensus 181 m~sL~vIGg-g~~g~E~aQ~faRL-G~~V~~~~RS~~---------------ll~~~epeis~~V~~~l~~eeG--i~~~ 241 (494) T TIGR02053 181 MESLVVIGG-GAIGVELAQAFARL-GSEVTILQRSER---------------LLPREEPEISAAVEEALAEEEG--IEVV 241 (494) T ss_pred EEEEEEECC-CHHHHHHHHHHHHC-CCEEEHHHHHHH---------------HCCCCCHHHHHHHHHHHCCCCC--EEEE T ss_conf 046888865-28999999999857-761403679986---------------4464688899999998414787--7998 Q ss_pred CCCCCHH---H-HHHHHHCCCCCCH Q ss_conf 2763035---5-5431100210004 Q gi|254780294|r 80 DTSTAHR---I-APGWVYGFPEMDK 100 (311) Q Consensus 80 d~ss~~R---~-~~~vpl~vPEvN~ 100 (311) ..+-..| . |.+..++.-|.|. T Consensus 242 ~~~r~~~~v~~rngg~~~~~~e~~~ 266 (494) T TIGR02053 242 TSARQVKAVSVRNGGGKIVTVEKNG 266 (494) T ss_pred ECCEEEEEEEECCCCEEEEEEECCC T ss_conf 0440355444527981899985589 No 368 >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional Probab=62.55 E-value=11 Score=17.30 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=26.2 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 907--9997588678999999986299728999965 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |.| |.|||| |.||..+--.|.++ .+.+..+-. T Consensus 1 M~~~DV~IvGa-G~vGl~lAl~La~~-G~~V~iiE~ 34 (384) T PRK08849 1 MNKYDIAVVGG-GMVGAATAIGFAKQ-GRSVAVIEG 34 (384) T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 98189999992-49999999999957-995999968 No 369 >PRK05600 thiamine biosynthesis protein ThiF; Validated Probab=62.33 E-value=11 Score=17.27 Aligned_cols=119 Identities=12% Similarity=0.076 Sum_probs=63.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C Q ss_conf 079997588678999999986299728999---------------9653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~ 42 (311) .||.|||| |=.|.-.+.-|+.--.-+|.. +.+.+..|+. + T Consensus 42 a~VlvvG~-GGLG~p~~~yLaaaGvG~i~ivD~D~Ve~sNL~RQil~~~~diG~~K~~~A~~~l~~lNp~i~i~~~~~~l 120 (370) T PRK05600 42 ARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERL 120 (370) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCHHHCCCCHHHHHHHHHHHHCCCCCEEEHHHHC T ss_conf 97899888-75789999999982897489873898260210555426976669757999999999878997157356646 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCH---HHHHHCCCCE-EEEC Q ss_conf 6----677479989999389837899999986125848982276303555431100210004---7765204960-7725 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDK---SQKEKIRSAR-YITN 114 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~---~~~~~~~~~~-iIan 114 (311) + .+.++++|+|+=|+++-.++-.+..+...-. +..| .++.+|++-.+-...|.... -.+....... -=+. T Consensus 121 ~~~n~~~li~~~DvVvD~tDNf~tRylindaC~~~~-~PlV-~ga~~~~eGQvsvf~~~~~~~~pcyrclfP~~p~~~~~ 198 (370) T PRK05600 121 TAENAVELLNGVDLVLDGSDSFATKFLVADAAEITG-TPLV-WGTVLRFHGELAVFNSGPDHRGVGLRDLFPEQPSGDSI 198 (370) T ss_pred CHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHC-CCEE-EEEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 999999876368789977888799999999999849-9769-84532628899998168888886300267889974333 Q ss_pred CCCCCCCCH Q ss_conf 842113311 Q gi|254780294|r 115 PGCYATGAI 123 (311) Q Consensus 115 PnC~~t~~~ 123 (311) |+|.....+ T Consensus 199 p~C~~~GVL 207 (370) T PRK05600 199 PDCATAGVL 207 (370) T ss_pred CCCCCCCCC T ss_conf 576214606 No 370 >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Probab=61.26 E-value=12 Score=17.15 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=25.3 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 07999758867899999998629972899996530078 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN 39 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag 39 (311) .||||||+ |=.|..--..|... -.+++.+-.....| T Consensus 538 kKVAVIGs-GPAGLaAA~~Lar~-Gh~VTVFEk~~~~G 573 (1012) T TIGR03315 538 HKVAVIGA-GPAGLSAGYFLARA-GHPVTVFEKKEKPG 573 (1012) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC T ss_conf 88999897-78999999999977-99569981589788 No 371 >pfam02800 Gp_dh_C Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. C-terminal domain is a mixed alpha/antiparallel beta fold. Probab=61.22 E-value=12 Score=17.15 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=64.5 Q ss_pred HHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCHHHHCCC-CEEEEE Q ss_conf 24788888503455650267651233335610000001344--432234332222234444434201332167-113688 Q gi|254780294|r 124 AILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKN--MPDTISSNHFFYSLDLLHKHLPEITQYSLI-KTSPMF 200 (311) Q Consensus 124 laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~-~~~~~~ 200 (311) ..++.|++.++|.+...+|+.++.+. ....+..+... .......|..+ ........+.+..++ ..++.- T Consensus 3 P~~kvl~~~fgI~~g~mTTvHa~t~~----Q~l~D~~~~~d~rr~Raa~~niIP----t~TgAakav~~vlP~L~gkl~g 74 (158) T pfam02800 3 PLAKVLNDNFGIEKGLMTTVHAYTAD----QKLVDGPHHKDLRRGRAAAPNIIP----TSTGAAKAVGLVLPELKGKLTG 74 (158) T ss_pred CCHHHHHHHCCEEEEEEEEEECCCCC----CCCCCCCCCCCCCCCHHHHCCCCC----CCCHHHHHHHHHHHHHCCCEEE T ss_conf 00887876469548899876025387----413345587740002012212664----4517889997643420576226 Q ss_pred EEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCC Q ss_conf 75203433202789999863257754489988665422001 Q gi|254780294|r 201 LPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMG 241 (311) Q Consensus 201 ~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~ 241 (311) ...++|...+...-..+. ..+....+++.+.+.+..+. T Consensus 75 ~a~RVPt~~vS~vDlt~~---l~k~~t~eeIn~~~~~as~~ 112 (158) T pfam02800 75 MAFRVPTPNVSVVDLTVE---LEKPVTVEEVNAALKEAAEG 112 (158) T ss_pred EEEECCCCCCEEEEEEEE---ECCCCCHHHHHHHHHHHHHC T ss_conf 898347887406899999---66788899999999999746 No 372 >KOG3985 consensus Probab=61.20 E-value=12 Score=17.15 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=48.0 Q ss_pred CCEEEEECCCCHHHHHHHH----HHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--------CCCHHH-HHHHH Q ss_conf 9079997588678999999----9862997289999653007860066774799899993--------898378-99999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRS----RIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--------LPDVAS-LEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~----lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--------~p~~~s-~~~~~ 67 (311) |.|++|+|.||+---..++ ++..-||-.- |.- +..-..+++++||+| .|..+- +.-.- T Consensus 9 ~VklGIIGGsGl~dp~ile~~ve~~v~TP~G~p-------Sd~--v~~g~i~gv~cvllARHGr~H~imPt~Vn~rANiw 79 (283) T KOG3985 9 TVKLGIIGGSGLYDPDILEDPVELVVPTPWGKP-------SDP--VIIGQISGVHCVLLARHGRKHDIMPTKVNFRANIW 79 (283) T ss_pred EEEEEEECCCCCCCCHHHHCCHHHCCCCCCCCC-------CCC--EEEEECCCEEEEEEECCCCCCCCCCCCCCHHHHHH T ss_conf 079987536777783132051432589999996-------885--25531077589987223667763887676067689 Q ss_pred HHHHCCCCEEEECCCCCHHHHHHHH---HCCCC Q ss_conf 9861258489822763035554311---00210 Q gi|254780294|r 68 LIKKNGINSRIIDTSTAHRIAPGWV---YGFPE 97 (311) Q Consensus 68 ~~~~~g~~~~vid~ss~~R~~~~vp---l~vPE 97 (311) ++.+.|+. .+|.-+..=.+.++++ +++|. T Consensus 80 ALk~~gc~-~ii~~tAcGSLre~I~Pgd~v~p~ 111 (283) T KOG3985 80 ALKSLGCT-AIISFTACGSLREEIKPGDFVLPD 111 (283) T ss_pred HHHHCCCC-EEEEEECCCCCCCCCCCCCEECCH T ss_conf 99857974-899850124443458986675634 No 373 >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] Probab=61.16 E-value=12 Score=17.14 Aligned_cols=31 Identities=16% Similarity=0.399 Sum_probs=24.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 7999758867899999998629972899996 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) +|-+=||||+-|+-+++-|..+....+..+- T Consensus 2 ~vlLTGATGFLG~yLl~eLL~~~~~kv~cLV 32 (382) T COG3320 2 NVLLTGATGFLGAYLLLELLDRSDAKVICLV 32 (382) T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEE T ss_conf 1899457027699999999716887289998 No 374 >PRK08644 thiamine biosynthesis protein ThiF; Provisional Probab=61.13 E-value=12 Score=17.14 Aligned_cols=78 Identities=15% Similarity=0.258 Sum_probs=43.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE--------------CCCCCCCC------------------------CC Q ss_conf 07999758867899999998629972899996--------------53007860------------------------06 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP--------------CEERHNLR------------------------YR 43 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~--------------s~~~ag~~------------------------~~ 43 (311) .||.|+|+ |-.|......|..-=.-+|+.+. ..+..|+. ++ T Consensus 28 s~VlivG~-GGLG~~~a~~La~aGVG~i~lvD~D~Ve~SNL~RQ~~~~~diG~~Ka~~a~~~l~~iNp~v~I~~~~~~l~ 106 (209) T PRK08644 28 AKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMFKVEALKENLLRINPFVKIEVHQVKID 106 (209) T ss_pred CCEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCEECCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCC T ss_conf 96899888-78899999999993898189988999015411037567877597569999999874489828999722489 Q ss_pred ----HHHHCCCCEEEECCCCHHHHHHHH-HHHH-CCCCEEEECCC Q ss_conf ----677479989999389837899999-9861-25848982276 Q gi|254780294|r 44 ----EDLLNAADVSILCLPDVASLEIIQ-LIKK-NGINSRIIDTS 82 (311) Q Consensus 44 ----~~~~~~~Divf~a~p~~~s~~~~~-~~~~-~g~~~~vid~s 82 (311) ++.++++|+++=|+++-.++.+.. .+.. .+ ..++..| T Consensus 107 ~~n~~~l~~~~DiViDctDN~~tR~li~~~c~~~~~--~plV~as 149 (209) T PRK08644 107 EDNIEELFKDCDIVVEAFDNAETKAMLVETVLEKKG--KKVVSAS 149 (209) T ss_pred HHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCC--CCEEEEE T ss_conf 899999985799999999999999999999999779--9689996 No 375 >pfam02056 Glyco_hydro_4 Family 4 glycosyl hydrolase. Probab=61.03 E-value=12 Score=17.13 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=59.2 Q ss_pred EEEEECCCC-HHHHHHHHHHHCCC---CEEEEEEECCCCC---------------CCCC-------CHHHHCCCCEEEEC Q ss_conf 799975886-78999999986299---7289999653007---------------8600-------66774799899993 Q gi|254780294|r 3 KIFIDGEHG-TTGLKIRSRIVQRK---DLCLLSIPCEERH---------------NLRY-------REDLLNAADVSILC 56 (311) Q Consensus 3 kVaIvGATG-~vG~~li~lL~~hp---~~~l~~l~s~~~a---------------g~~~-------~~~~~~~~Divf~a 56 (311) ||+|+||-+ +....++..+..+| ..++.+..=++.. |..+ .++.++++|+||.+ T Consensus 1 KI~iIGaGS~~~~~~~~~d~~~~~~l~~~ei~L~DId~~rL~~~~~l~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183) T pfam02056 1 KIVIIGGGSTITPKNLLGDLDHTEELPGRELALYDIDEERLDAIQTACKKLVDEAGPDIKFEKTTDRKEALTDADFVINA 80 (183) T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCEEEEE T ss_conf 98999985444399999999608568989999977999999999999999999619983999978999996689999998 Q ss_pred C--CCHHHHHHHH-HHHHCCCCEEEECCC---CCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCC Q ss_conf 8--9837899999-986125848982276---30355543110021000477652049607725842 Q gi|254780294|r 57 L--PDVASLEIIQ-LIKKNGINSRIIDTS---TAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGC 117 (311) Q Consensus 57 ~--p~~~s~~~~~-~~~~~g~~~~vid~s---s~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC 117 (311) . +...+++.-. .-.+.|..-.+-|.- +-+|.-..+|..+ |+-.+-.+.-++++++---|. T Consensus 81 irvG~~~~r~~De~Iplk~Gv~~~~~eT~G~GG~~~alRtip~~l-~ia~~i~e~~P~AwliNytNP 146 (183) T pfam02056 81 IRVGLLPARELDEKIPLRHGVVGTIQETVGPGGIFRGLRTIPVFF-DIAKDIEELCPDAWVLNYTNP 146 (183) T ss_pred EEECCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCHHHHH-HHHHHHHHHCCCCEEEECCCH T ss_conf 640771488877767998396532332457228887760189999-999999997998389982788 No 376 >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport. Probab=60.43 E-value=12 Score=17.06 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=67.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 79997588678999999986299728999965300786006677479989999389837899999986125848982276 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) ++.|||. |++|-||=.++.+- -.+++-+ +-.|=++...+.++|+.....|...|. ..++-++ T Consensus 180 slvIiGG-GVIG~EfA~~f~~l-G~~VTv~---------------E~~drILp~~D~evSk~~~~~L~~~GN-v~i~~~~ 241 (481) T TIGR01350 180 SLVIIGG-GVIGVEFASIFASL-GVKVTVI---------------EMLDRILPGEDAEVSKVVKKKLKKKGN-VKILTNA 241 (481) T ss_pred EEEEECC-CHHHHHHHHHHHHC-CCEEEEE---------------ECCCCCCCCCCHHHHHHHHHHHHHCCC-EEEECCC T ss_conf 6699878-66778899999853-9808999---------------457500354316899999999974498-4985485 Q ss_pred CCH--HHHHHHHHCC--CCCCHH-HHHHCCCCEEEECCCC Q ss_conf 303--5554311002--100047-7652049607725842 Q gi|254780294|r 83 TAH--RIAPGWVYGF--PEMDKS-QKEKIRSARYITNPGC 117 (311) Q Consensus 83 s~~--R~~~~vpl~v--PEvN~~-~~~~~~~~~iIanPnC 117 (311) +-- ++..+--.+. .+.+.. ..+.+..-++.-.-|= T Consensus 242 ~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR 281 (481) T TIGR01350 242 KVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGR 281 (481) T ss_pred EEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECC T ss_conf 4423357752878999999879980588987399998424 No 377 >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated Probab=60.27 E-value=12 Score=17.05 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.8 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 999758867899999998629972899996 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) |.|||| |.+|..+--.|.++ .+.+..+- T Consensus 7 V~IvGa-Gp~Gl~lA~~La~~-G~~v~viE 34 (405) T PRK08850 7 VAIIGG-GMVGLALAAALKDS-DLRIAVIE 34 (405) T ss_pred EEEECC-CHHHHHHHHHHHHC-CCCEEEEE T ss_conf 899991-58999999999858-99789993 No 378 >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Probab=59.94 E-value=12 Score=17.01 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=62.2 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH- Q ss_conf 999999986299728999965300786006677479989999389837899999986125848-----98227630355- Q gi|254780294|r 14 GLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI- 87 (311) Q Consensus 14 G~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~- 87 (311) =++++++|.++|..-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+.-.+. .|.|...+.+. T Consensus 5 ~~~i~~~l~~~~iipVlr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~p~~~vGaGTVl~~e~~~~a~ 84 (212) T PRK06015 5 TEKLLSILKGQPVIPVLLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAA 84 (212) T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHH T ss_conf 99999999879979999779999999999999987998899968995199999999986999679542115699999999 Q ss_pred HHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 5431-100210004776520496077258421133112 Q gi|254780294|r 88 APGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 88 ~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) +.+. -++-|-++++..+..+..++.--|||.|.+=++ T Consensus 85 ~aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~ 122 (212) T PRK06015 85 KAGSRFIVSPGTTQELLAAANDSDVPLLPGAITPSEVM 122 (212) T ss_pred HCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH T ss_conf 84998998589999999999983997737869999999 No 379 >PRK06101 short chain dehydrogenase; Provisional Probab=59.48 E-value=12 Score=16.96 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=29.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 9079997588678999999986299728999965300 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) |+.|-|.|||+=.|+++.+.|.++ -.++...+-++. T Consensus 1 MktvlITGassGIG~a~A~~la~~-G~~Vi~~~R~~~ 36 (241) T PRK06101 1 MTSVLITGATSGIGKQLALDYAKA-GWKVIACGRNEA 36 (241) T ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHH T ss_conf 998999224049999999999987-998999989999 No 380 >COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only] Probab=59.48 E-value=12 Score=16.96 Aligned_cols=103 Identities=15% Similarity=0.118 Sum_probs=56.6 Q ss_pred HHHHHHCC--CCEEEEEEECCCC-CCCCCCHHHHCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHH Q ss_conf 99998629--9728999965300-7860066774799899993-----89837899999986125848982276303555 Q gi|254780294|r 17 IRSRIVQR--KDLCLLSIPCEER-HNLRYREDLLNAADVSILC-----LPDVASLEIIQLIKKNGINSRIIDTSTAHRIA 88 (311) Q Consensus 17 li~lL~~h--p~~~l~~l~s~~~-ag~~~~~~~~~~~Divf~a-----~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~ 88 (311) |-+.|.++ +..+.+.+--+.. .-..+ ....+.+|++|+. ++++.+++-+.++.... -++| ..++++- T Consensus 26 la~~L~~~G~~v~~~~~VgD~~~~I~~~l-~~a~~r~D~vI~tGGLGPT~DDiT~e~vAka~g~~---lv~~-~~al~~i 100 (255) T COG1058 26 LADELTELGVDLARITTVGDNPDRIVEAL-REASERADVVITTGGLGPTHDDLTAEAVAKALGRP---LVLD-EEALAMI 100 (255) T ss_pred HHHHHHHCCCEEEEEEECCCCHHHHHHHH-HHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHCCC---CCCC-HHHHHHH T ss_conf 99999964961899996399999999999-99971899899879858996276899999982998---5669-9999999 Q ss_pred HH-HH---HCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 43-11---00210004776520496077258421133112 Q gi|254780294|r 89 PG-WV---YGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 89 ~~-vp---l~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) .+ .- ...+|-|.-+-...+++.++.||-|++-...+ T Consensus 101 ~~~~~~r~~~~~~~~~K~A~~P~Ga~~l~NpvG~APG~~v 140 (255) T COG1058 101 EEKYAKRGREMTEANRKQAMLPEGAEVLDNPVGTAPGFVV 140 (255) T ss_pred HHHHHHCCCCCCHHHHHHCCCCCCCEECCCCCCCCCEEEE T ss_conf 9999852888885566410478988757787776873698 No 381 >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. Probab=59.40 E-value=12 Score=16.95 Aligned_cols=31 Identities=35% Similarity=0.390 Sum_probs=22.7 Q ss_pred EEEEECCCCHHHHHHHHHHH-CCCCEEEEEEEC Q ss_conf 79997588678999999986-299728999965 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIV-QRKDLCLLSIPC 34 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~-~hp~~~l~~l~s 34 (311) -|+|||+ ||+|.-.--.|. .+|..++..|-. T Consensus 26 DVvIIGg-G~tGLstA~~L~~~~pg~~VvvLEa 57 (460) T TIGR03329 26 DVCIVGG-GFTGLWTAIMIKQQRPALDVLVLEA 57 (460) T ss_pred EEEEECC-CHHHHHHHHHHHHHCCCCCEEEEEC T ss_conf 1999994-3999999999997489998899948 No 382 >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase; InterPro: IPR005762 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD). MurD catalyses the addition of d-glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-l-alanine. ; GO: 0005524 ATP binding, 0008764 UDP-N-acetylmuramoylalanine-D-glutamate ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm. Probab=59.38 E-value=12 Score=16.95 Aligned_cols=134 Identities=25% Similarity=0.180 Sum_probs=80.1 Q ss_pred EEEEECCCCHHHH--HHHHHHHCC-CCEEEEEEECCCC-----------------CCCCCCHHHHCCCCEEEECCCCHHH Q ss_conf 7999758867899--999998629-9728999965300-----------------7860066774799899993898378 Q gi|254780294|r 3 KIFIDGEHGTTGL--KIRSRIVQR-KDLCLLSIPCEER-----------------HNLRYREDLLNAADVSILCLPDVAS 62 (311) Q Consensus 3 kVaIvGATG~vG~--~li~lL~~h-p~~~l~~l~s~~~-----------------ag~~~~~~~~~~~Divf~a~p~~~s 62 (311) ||.|+|= |-+|+ -+.+.|.++ ..+.+.-...... .|.+-..+.+.++|+|+.+=|=... T Consensus 1 ~i~i~Gl-G~tG~G~a~a~~L~~~g~~~~~~D~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~vv~SPGi~~~ 79 (476) T TIGR01087 1 KILILGL-GKTGRGVAVARFLKKKGAEVTVTDDDPEEELERSKGQLKLSEGVVLYTGGKDDLEDLNNADLVVLSPGIPPD 79 (476) T ss_pred CEEEEEE-CCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCC T ss_conf 9789986-751078999999997298799998452213431133124556413532675310123342079978989867 Q ss_pred HHHHHHHHHCCCCEEEECCCCCHHHHHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCE Q ss_conf 99999986125848982276303555431-10021000477652049607725842113311247888885034556502 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAHRIAPGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPI 141 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~R~~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~laL~PL~~~~~i~~~~~~ 141 (311) .++...+.++|.. ++=|..-+||..+.. |.-+= =|+.-|-=||...| +.-|++..+++. T Consensus 80 hp~~~~a~~~g~~-v~gdi~L~~~~~~~~~~~~~~--------------aITGTnGKtTTT~L-~~~~L~~~G~~a---- 139 (476) T TIGR01087 80 HPLVQAAAKRGIP-VVGDIELALRLVDFPEPAKVV--------------AITGTNGKTTTTSL-LYHLLKAAGLKA---- 139 (476) T ss_pred CHHHHHHHHCCCE-EEEHHHHHHHHCCCCCCCCEE--------------EEECCCCHHHHHHH-HHHHHHHCCCCE---- T ss_conf 7799999966980-898679999741578987379--------------99726860799999-999998469977---- Q ss_pred EEEEECCCCCCCCCCCHHCCC Q ss_conf 676512333356100000013 Q gi|254780294|r 142 TINAVSGYTGGGKKLISRMEQ 162 (311) Q Consensus 142 ~~~~~sg~sgaG~~~~~~~~~ 162 (311) ..| |--|.++++.+.. T Consensus 140 ----~~g-GNIG~p~L~~~~~ 155 (476) T TIGR01087 140 ----VLG-GNIGTPALEVLDQ 155 (476) T ss_pred ----EEE-CCCCCHHHHHHCC T ss_conf ----862-5788125553105 No 383 >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] Probab=59.15 E-value=13 Score=16.93 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=57.5 Q ss_pred EEEEEECCCCCCCCCCHHHH-CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHC Q ss_conf 89999653007860066774-79989999389837899999986125848982276303555431100210004776520 Q gi|254780294|r 28 CLLSIPCEERHNLRYREDLL-NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKI 106 (311) Q Consensus 28 ~l~~l~s~~~ag~~~~~~~~-~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~ 106 (311) ++..++++.+.+..-.-..+ ..-|=|+...-......|++.+...|..+.+++..-. .-+-||--.+.++.- T Consensus 57 ~~~ll~gsGt~amEAav~sl~~pgdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg-------~~v~p~~v~~~L~~~ 129 (383) T COG0075 57 DVVLLSGSGTLAMEAAVASLVEPGDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWG-------EAVDPEEVEEALDKD 129 (383) T ss_pred CEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCC-------CCCCHHHHHHHHHCC T ss_conf 4799768837999999986058998699982780777999999982996699847888-------879999999998528 Q ss_pred CCCEEEECCCCCCC-CCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC Q ss_conf 49607725842113-311247888885034556502676512333356 Q gi|254780294|r 107 RSARYITNPGCYAT-GAIAILRPLRKAKLLPDRYPITINAVSGYTGGG 153 (311) Q Consensus 107 ~~~~iIanPnC~~t-~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG 153 (311) .....|+..-|=|. .++-+|.-+.+...-. ....+++++|+.+|-- T Consensus 130 ~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~-g~l~iVDaVsS~Gg~~ 176 (383) T COG0075 130 PDIKAVAVVHNETSTGVLNPLKEIAKAAKEH-GALLIVDAVSSLGGEP 176 (383) T ss_pred CCCCEEEEEECCCCCCCCCCHHHHHHHHHHC-CCEEEEEECCCCCCCC T ss_conf 9950899981157520137699999999972-9889998234578812 No 384 >PRK06199 ornithine cyclodeaminase; Validated Probab=59.14 E-value=13 Score=16.93 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=6.8 Q ss_pred CCCEEEECCCCHHHH Q ss_conf 998999938983789 Q gi|254780294|r 49 AADVSILCLPDVASL 63 (311) Q Consensus 49 ~~Divf~a~p~~~s~ 63 (311) +.|-=|-|+|.=+.. T Consensus 73 ~~d~r~~amPaylgg 87 (379) T PRK06199 73 GPDRRFMAMPAYLGG 87 (379) T ss_pred CCCCCEEEECCCCCC T ss_conf 888748971441278 No 385 >PTZ00188 adrenodoxin reductase; Provisional Probab=59.09 E-value=13 Score=16.92 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=34.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC---------------------------------------CCCCC Q ss_conf 079997588678999999986299728999965300---------------------------------------78600 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER---------------------------------------HNLRY 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~---------------------------------------ag~~~ 42 (311) +||||||+ |=-|-=--+.|.++|..++..+-.-.- .|+.+ T Consensus 40 lRVAIVGS-GPAGfYaA~~Llk~~~v~VD~fErLP~PfGLVRyGVAPDHpevKnv~~~f~~~a~~p~~rF~GNV~vG~Di 118 (506) T PTZ00188 40 FKVGIIGA-GPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYRTFDLVFSSPNYRFFGNVHVGVDL 118 (506) T ss_pred CEEEEECC-CCHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECEEECCCC T ss_conf 57999888-83899999999638997798882689887411104688985660689999999658975999473348988 Q ss_pred C-HHHHCCCCEEEECCCCH Q ss_conf 6-67747998999938983 Q gi|254780294|r 43 R-EDLLNAADVSILCLPDV 60 (311) Q Consensus 43 ~-~~~~~~~Divf~a~p~~ 60 (311) + ++....+|.|+||.++. T Consensus 119 tl~eL~~~YdAVVlA~GAs 137 (506) T PTZ00188 119 KMEELRRHYNCVIFCCGAS 137 (506) T ss_pred CHHHHHHHCCEEEEECCCC T ss_conf 9999986389999947978 No 386 >KOG0409 consensus Probab=58.67 E-value=13 Score=16.88 Aligned_cols=63 Identities=14% Similarity=0.215 Sum_probs=45.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCC----------HHHHCCCCEEEECCCCHHHHHH Q ss_conf 9079997588678999999986299728999965300786006----------6774799899993898378999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYR----------EDLLNAADVSILCLPDVASLEI 65 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~----------~~~~~~~Divf~a~p~~~s~~~ 65 (311) +.||+-+|- |.-|..|.+-|-.+ -+.++...-...+-+.+. .+..+++|++|.++|+....+- T Consensus 35 ~~~iGFIGL-G~MG~~M~~nLik~-G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~ 107 (327) T KOG0409 35 KTRIGFIGL-GNMGSAMVSNLIKA-GYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKD 107 (327) T ss_pred CCEEEEEEE-CCCHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCHHHHCCHHHHHHHCCEEEEECCCHHHHHH T ss_conf 551357743-41118999999975-98799995867887899970501407979998636889997688076688 No 387 >TIGR02735 purC_vibrio phosphoribosylaminoimidazole-succinocarboxamide synthase; InterPro: IPR014106 Members of this protein family appear to represent a novel form of phosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase), significantly different in sequence from (IPR001636 from INTERPRO), which is found in a broad range of bacteria and eukaryotes. Members of this family are found within the gammaproteobacteria in the genera Vibrio, Shewanella, and Colwellia, and also (reported as a fragment) in the primitive eukaryote Guillardia theta (Cryptomonas phi).. Probab=58.41 E-value=4.7 Score=19.56 Aligned_cols=28 Identities=18% Similarity=0.207 Sum_probs=17.5 Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC Q ss_conf 37899999986125848982276303555431100 Q gi|254780294|r 60 VASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG 94 (311) Q Consensus 60 ~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~ 94 (311) .+|.+|-..|.+.| ++..|=+|-.-|++ T Consensus 88 AiS~~WF~~F~~~g-------LA~SHIL~~PHP~v 115 (365) T TIGR02735 88 AISNHWFKLFKEAG-------LAESHILDIPHPFV 115 (365) T ss_pred HHHHHHHHHHHHCC-------CCHHHHCCCCCCEE T ss_conf 88899999987457-------40010015898718 No 388 >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase; InterPro: IPR003710 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway . Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE . ApbA and PanE are allelic .; GO: 0008677 2-dehydropantoate 2-reductase activity, 0006206 pyrimidine base metabolic process. Probab=58.39 E-value=13 Score=16.85 Aligned_cols=94 Identities=20% Similarity=0.234 Sum_probs=58.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC-CEEEEEEECC---CC------CCCCCC-------------------HHHH--CCCC Q ss_conf 79997588678999999986299-7289999653---00------786006-------------------6774--7998 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK-DLCLLSIPCE---ER------HNLRYR-------------------EDLL--NAAD 51 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp-~~~l~~l~s~---~~------ag~~~~-------------------~~~~--~~~D 51 (311) ||+|+|+ |.+|.-+--.|.+-. .-++++++-. +. .|..+. ...+ .++| T Consensus 1 ~i~i~G~-GA~G~l~ga~L~~~g~~~~V~~~~R~~r~~~~~~~~~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 79 (332) T TIGR00745 1 KIAIIGA-GAVGSLYGARLARAGANHDVTLLARGKRPKQLEALNQEGLRIVSLDGEGVFELKIPVSAATDPETLPPQKAD 79 (332) T ss_pred CEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCEEEECCCCCCEEEECCCEEECCCCCCCCCCCC T ss_conf 9689951-788999999987318995189998872168899998588389762567750330441220475335787754 Q ss_pred EEEECCCCHHHHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHHCCCC Q ss_conf 99993898378999999-86125848982276303555431100210 Q gi|254780294|r 52 VSILCLPDVASLEIIQL-IKKNGINSRIIDTSTAHRIAPGWVYGFPE 97 (311) Q Consensus 52 ivf~a~p~~~s~~~~~~-~~~~g~~~~vid~ss~~R~~~~vpl~vPE 97 (311) ++|.|+=.-.+.+.+.. ....+.+++|+-.-.=........-.+|+ T Consensus 80 ~~~~~~K~~~~~~~~~~~~~~~~~~~~vl~lqNG~g~~e~l~~~~~~ 126 (332) T TIGR00745 80 LVIITVKAYQTEEALALLLPLIGPNTVVLLLQNGLGHEEKLAELLPE 126 (332) T ss_pred EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCC T ss_conf 89997035004899999986418882799973880279999985069 No 389 >PRK07818 dihydrolipoamide dehydrogenase; Reviewed Probab=57.55 E-value=13 Score=16.76 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=15.4 Q ss_pred EEEECCCCHHHHHHHHHHHCC Q ss_conf 999758867899999998629 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~h 24 (311) |.|+|+ |-.|...-..+.+. T Consensus 7 viVIG~-GpaG~~aA~~aa~~ 26 (467) T PRK07818 7 VVVLGA-GPGGYVAAIRAAQL 26 (467) T ss_pred EEEECC-CHHHHHHHHHHHHC T ss_conf 899997-88999999999978 No 390 >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated Probab=57.43 E-value=13 Score=16.75 Aligned_cols=29 Identities=17% Similarity=0.231 Sum_probs=24.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9997588678999999986299728999965 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |.|||| |.||..+--.|.++ .+++..+-. T Consensus 9 V~IvGa-Gp~Gl~lA~~L~~~-G~~v~liE~ 37 (392) T PRK08773 9 AVIVGG-GVVGAACALALADA-GLSVALVEG 37 (392) T ss_pred EEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 899990-69999999999866-997899917 No 391 >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] Probab=57.32 E-value=13 Score=16.74 Aligned_cols=75 Identities=13% Similarity=0.282 Sum_probs=38.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE-E-CCCCCCCCCCH-------H-----HHCCCCEEEECCCC---HHHHH Q ss_conf 0799975886789999999862997289999-6-53007860066-------7-----74799899993898---37899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-P-CEERHNLRYRE-------D-----LLNAADVSILCLPD---VASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~-s~~~ag~~~~~-------~-----~~~~~Divf~a~p~---~~s~~ 64 (311) .++.|+|| |..|..|++-+..+|......+ + .....|.++.. + .-.+.|.++.|.|+ +.-++ T Consensus 117 ~r~lIiGA-G~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv~V~g~~~i~~~v~~~~~~~iiiAips~~~~~~~~ 195 (588) T COG1086 117 IRLLIIGA-GSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGVPVLGRIEIERVVEELGIQLILIAIPSASQEERRR 195 (588) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCEEECEEEECHHHHHHHHHHCCCCEEEEECCCCCHHHHHH T ss_conf 86699937-65899999999748996159998887365188770226423147999999718766999648788999999 Q ss_pred HHHHHHHCCCCEE Q ss_conf 9999861258489 Q gi|254780294|r 65 IIQLIKKNGINSR 77 (311) Q Consensus 65 ~~~~~~~~g~~~~ 77 (311) +...+...|..++ T Consensus 196 i~~~l~~~~~~v~ 208 (588) T COG1086 196 ILLRLARTGIAVR 208 (588) T ss_pred HHHHHHHCCCCEE T ss_conf 9999875597078 No 392 >PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated Probab=57.27 E-value=13 Score=16.84 Aligned_cols=25 Identities=20% Similarity=0.040 Sum_probs=15.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEE Q ss_conf 9079997588678999999986299728 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLC 28 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~ 28 (311) |.||||+||-- .|+-.|++.-...+ T Consensus 1 M~KIGIIGAMe---eEI~~L~~~m~~~~ 25 (459) T PRK06698 1 MNRIGIIGAMQ---IEIDLLLEKLIMQE 25 (459) T ss_pred CCEEEEECCCH---HHHHHHHHHHHCCC T ss_conf 95379981679---99999999731251 No 393 >pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases. Probab=57.21 E-value=14 Score=16.73 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=8.2 Q ss_pred HHHHHHHCCCCEEEECCCC Q ss_conf 9999861258489822763 Q gi|254780294|r 65 IIQLIKKNGINSRIIDTST 83 (311) Q Consensus 65 ~~~~~~~~g~~~~vid~ss 83 (311) .+..+...|..+.++|.+. T Consensus 35 A~~~A~~lGa~V~v~D~~~ 53 (150) T pfam01262 35 AAATAKGLGAPVTILDVRP 53 (150) T ss_pred HHHHHHHCCCEEEEEECCH T ss_conf 9999986799899972999 No 394 >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] Probab=57.04 E-value=14 Score=16.71 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=39.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC------C--C--CCHH--------HH--CCCCEEEECCCCHHH Q ss_conf 7999758867899999998629972899996530078------6--0--0667--------74--799899993898378 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN------L--R--YRED--------LL--NAADVSILCLPDVAS 62 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag------~--~--~~~~--------~~--~~~Divf~a~p~~~s 62 (311) +|-|.||||-||.-.++|....-...+...+|++..- - . +++. .. .++|++|-+.+.+.. T Consensus 145 ~VLv~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~d~~~~v~~~t~g~gvDvv~D~vG~~~~ 224 (326) T COG0604 145 TVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTF 224 (326) T ss_pred EEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCEEEECCCHHHH T ss_conf 79997785469999999999849958999817578899987399889705642489999998379987889979867999 Q ss_pred HHHHHHHHHCCCCEEEECCCC Q ss_conf 999999861258489822763 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss 83 (311) .+....+...|. ...|-..+ T Consensus 225 ~~~l~~l~~~G~-lv~ig~~~ 244 (326) T COG0604 225 AASLAALAPGGR-LVSIGALS 244 (326) T ss_pred HHHHHHHCCCCE-EEEEECCC T ss_conf 999997425958-99980688 No 395 >TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate.2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process. Probab=56.75 E-value=14 Score=16.68 Aligned_cols=36 Identities=11% Similarity=0.223 Sum_probs=27.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 07999758867899999998629972899996530078 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN 39 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag 39 (311) .||||||| |=.|..==.+|.+ --.++..+.--...| T Consensus 144 ~rVAviGA-GPAGLaCAD~L~R-aGV~v~VfDRhP~iG 179 (480) T TIGR01318 144 KRVAVIGA-GPAGLACADILAR-AGVQVVVFDRHPEIG 179 (480) T ss_pred CEEEEECC-CCCHHHHHHHHHH-CCCEEEEEECCCCCC T ss_conf 27899778-8602579998751-785599974770307 No 396 >PRK06482 short chain dehydrogenase; Provisional Probab=56.70 E-value=14 Score=16.67 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=41.7 Q ss_pred CCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHH-HHHHHH-HHHCCCCEE Q ss_conf 9079997-5886789999999862997289999653007860066774799899993898378-999999-861258489 Q gi|254780294|r 1 MYKIFID-GEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVAS-LEIIQL-IKKNGINSR 77 (311) Q Consensus 1 M~kVaIv-GATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s-~~~~~~-~~~~g~~~~ 77 (311) |.|+.+| |||+=.|+++.+.|.++-+ .+...+.+..+-..+.......+-++-+-+-+..+ ++.+.. +.+-|.--. T Consensus 1 M~Kv~lITGaSsGiG~ala~~l~~~G~-~Vi~t~R~~~~l~~l~~~~~~~~~~~~~Dvt~~~~v~~~v~~~~~~~G~iDv 79 (276) T PRK06482 1 MTKTWFITGASSGFGRGLTERLLARGD-RVAATVRRPDALDDLKARYGERLWVLQLDVTDTAAVRAVVDRAFAELGRIDV 79 (276) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHCCCCCE T ss_conf 997899915865999999999998899-8999978989999999866995799995379999999999999998099878 Q ss_pred EECCCCC Q ss_conf 8227630 Q gi|254780294|r 78 IIDTSTA 84 (311) Q Consensus 78 vid~ss~ 84 (311) +|.|++. T Consensus 80 LVNNAG~ 86 (276) T PRK06482 80 VVSNAGY 86 (276) T ss_pred EEECCCC T ss_conf 8746877 No 397 >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol Probab=56.60 E-value=14 Score=16.66 Aligned_cols=27 Identities=26% Similarity=0.337 Sum_probs=19.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEE Q ss_conf 0799975886789999999862997289 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCL 29 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l 29 (311) .||.|+|+ |-.|.+..+-|..--.-+| T Consensus 20 s~VlVvG~-GGLG~~v~~~La~aGVg~i 46 (198) T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGIDSI 46 (198) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEE T ss_conf 98999877-8899999999997499869 No 398 >pfam02719 Polysacc_synt_2 Polysaccharide biosynthesis protein. This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Probab=56.48 E-value=14 Score=16.65 Aligned_cols=32 Identities=13% Similarity=0.339 Sum_probs=24.4 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 99975886789999999862997289999653 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |-|-|++|++|..|++.|.+.-.-++..+... T Consensus 1 ILVTGGaGFIGS~Lv~~Ll~~g~~~v~v~d~~ 32 (280) T pfam02719 1 VLVTGGGGSIGSELCRQILKFNPKKIILFSRD 32 (280) T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEECC T ss_conf 79974886799999999996899889999088 No 399 >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. Probab=56.47 E-value=14 Score=16.65 Aligned_cols=70 Identities=19% Similarity=0.130 Sum_probs=46.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEE---------------EECCCCCCCC------------------------C Q ss_conf 079997588678999999986299728999---------------9653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLS---------------IPCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~---------------l~s~~~ag~~------------------------~ 42 (311) .||.|+|+ |-+|.+..+-|..--.-+++. +..++..|+. + T Consensus 22 s~VlvvG~-GGLG~~v~~~La~aGvg~i~ivD~d~v~~snL~RQ~l~~~~diG~~Ka~~a~~~l~~lNp~v~i~~~~~~~ 100 (197) T cd01492 22 ARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI 100 (197) T ss_pred CCEEEECC-CHHHHHHHHHHHHHCCCEEEEEECCCCCHHHCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC T ss_conf 95999887-88999999999983798699998991877773978603233478885999999999738997289870458 Q ss_pred ---CHHHHCCCCEEEECCCCHHHHHHHHHHHHC Q ss_conf ---667747998999938983789999998612 Q gi|254780294|r 43 ---REDLLNAADVSILCLPDVASLEIIQLIKKN 72 (311) Q Consensus 43 ---~~~~~~~~Divf~a~p~~~s~~~~~~~~~~ 72 (311) .++.++++|+++.|+++-.++.....+..+ T Consensus 101 ~~~~~~~i~~~D~Vvd~~dn~~~r~~iN~~c~~ 133 (197) T cd01492 101 SEKPEEFFSQFDVVVATELSRAELVKINELCRK 133 (197) T ss_pred CHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHH T ss_conf 576899982899999999999999999999998 No 400 >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Probab=56.12 E-value=14 Score=16.61 Aligned_cols=110 Identities=12% Similarity=0.086 Sum_probs=61.9 Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H Q ss_conf 99999986299728999965300786006677479989999389837899999986125848-----98227630355-5 Q gi|254780294|r 15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A 88 (311) Q Consensus 15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~ 88 (311) +++++.|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+...+. .|.|.....+. + T Consensus 4 ~~~l~~L~~~~vi~Vlr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~a~~~I~~l~~~~p~~~iGaGTV~~~e~~~~a~~ 83 (210) T PRK07455 4 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTLLTLEDLEEAIA 83 (210) T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH T ss_conf 99999999799799997599999999999999879988999689988999999999878996898881878999999998 Q ss_pred HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 431-100210004776520496077258421133112 Q gi|254780294|r 89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) .+. -++-|-+|++..+......+..-|||.|.+=++ T Consensus 84 aGA~FiVSP~~~~~vi~~a~~~~i~~iPGv~TpsEi~ 120 (210) T PRK07455 84 AGAQFCFTPHVDLELIQAAVAADIPIIPGALTPTEIV 120 (210) T ss_pred CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH T ss_conf 6999998688889999999982997658869999999 No 401 >PRK07233 hypothetical protein; Provisional Probab=56.00 E-value=14 Score=16.60 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=31.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC Q ss_conf 7999758867899999998629972899996530078600 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRY 42 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~ 42 (311) ||+|||| |..|..--..|+++ -.+++.+=.+...|-+. T Consensus 1 rVvVIGa-G~aGLsaA~~L~~~-G~~V~VlEa~~~~GGr~ 38 (430) T PRK07233 1 KIAIIGG-GIMGLAAAYRLAKA-GHEVTVFEADDQLGGLA 38 (430) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCCCCE T ss_conf 9899997-78999999999839-99889995899895997 No 402 >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed Probab=55.86 E-value=14 Score=16.59 Aligned_cols=87 Identities=14% Similarity=0.111 Sum_probs=52.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC---CC--------------CC----------------CHHHHC Q ss_conf 0799975886789999999862997289999653007---86--------------00----------------667747 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH---NL--------------RY----------------REDLLN 48 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a---g~--------------~~----------------~~~~~~ 48 (311) .||||||| |.-|.-+-.+....-.+++++..-+..+ |+ ++ +-..+. T Consensus 310 ~kv~ViGa-G~MG~gIA~~~a~~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~v~~g~~~~~~~~~~l~~i~~~~~~~~~~ 388 (706) T PRK11154 310 NKVGVLGG-GLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHMTPAERDKQMALISGTTDYRGFK 388 (706) T ss_pred CEEEEECC-CCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCEEEECCHHHHC T ss_conf 67999864-73238999999998698799997999999999998899999998618999899999862241004412315 Q ss_pred CCCEEEECCCCHHHHH--HHHHHHH-CCCCEEEECCCCCHHHHH Q ss_conf 9989999389837899--9999861-258489822763035554 Q gi|254780294|r 49 AADVSILCLPDVASLE--IIQLIKK-NGINSRIIDTSTAHRIAP 89 (311) Q Consensus 49 ~~Divf~a~p~~~s~~--~~~~~~~-~g~~~~vid~ss~~R~~~ 89 (311) ++|+|+=|.+....-+ ...++.+ ...++.+-+|+|....+. T Consensus 389 ~~DlVIEAv~E~~~~K~~v~~~le~~~~~~aIlAtNTSsl~i~~ 432 (706) T PRK11154 389 HADLVIEAVFEDLALKQQMVADVEQNCAEHTIFASNTSSLPIGQ 432 (706) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHH T ss_conf 68879997145288899999999964798858950676776899 No 403 >PRK06116 glutathione reductase; Validated Probab=55.68 E-value=14 Score=16.57 Aligned_cols=19 Identities=0% Similarity=-0.136 Sum_probs=9.7 Q ss_pred CCCEEEEEEEEECCCCEEE Q ss_conf 9960799999808997699 Q gi|254780294|r 266 GNDKLHLFFFDSSELPYIN 284 (311) Q Consensus 266 g~n~v~Vg~~~~~~~~~~~ 284 (311) +....++-...|.+++++. T Consensus 385 ~~~~g~~Klv~d~~t~~IL 403 (450) T PRK06116 385 HRQPCLMKLVVDGKEEKVV 403 (450) T ss_pred CCCCEEEEEEEECCCCEEE T ss_conf 9886799999999979799 No 404 >PRK09414 glutamate dehydrogenase; Provisional Probab=55.23 E-value=15 Score=16.52 Aligned_cols=12 Identities=33% Similarity=0.174 Sum_probs=6.3 Q ss_pred CCHHHHHHHHHH Q ss_conf 210136899999 Q gi|254780294|r 291 NLGKGASGAAIQ 302 (311) Q Consensus 291 NL~KGAAgnAVQ 302 (311) ||+.||--.+++ T Consensus 423 ~l~~gA~i~g~~ 434 (446) T PRK09414 423 NYVLGANIAGFV 434 (446) T ss_pred CHHHHHHHHHHH T ss_conf 899985899999 No 405 >PRK12550 shikimate 5-dehydrogenase; Reviewed Probab=55.02 E-value=15 Score=16.50 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=50.5 Q ss_pred CCCCCCCCHHHHC--CCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEE Q ss_conf 0078600667747--99899993898378999999861258489822763035554311002100047765204960772 Q gi|254780294|r 36 ERHNLRYREDLLN--AADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYIT 113 (311) Q Consensus 36 ~~ag~~~~~~~~~--~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIa 113 (311) .+-|.++....|+ +.|.+..+...+--.++...+...++. =.+-+-.|..+ +--.+-|+.+.+.. +-.-+-|- T Consensus 20 ~~~~~~mHN~af~~lgl~~~Y~~~~~~~l~~~i~~lr~~~~~--G~nVTiP~K~~--i~~~lD~ld~~A~~-iGAVNTiv 94 (272) T PRK12550 20 SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIR--GCAVSMPFKEA--CIPLVDELDPSAKA-IESVNTIV 94 (272) T ss_pred CCCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHCCCC--EEEECCCCHHH--HHHHHCCCCHHHHH-HCCEEEEE T ss_conf 867789999999987999299863787799999988757998--89986436999--99985436888997-27554799 Q ss_pred CCC-----CCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHCC Q ss_conf 584-----211331124788888503455650267651233335610000001 Q gi|254780294|r 114 NPG-----CYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRME 161 (311) Q Consensus 114 nPn-----C~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~~~~~~~ 161 (311) +-+ -+|= ...+.-+++...+.....+. .-|+||++++..-.+. T Consensus 95 ~~~g~l~G~NTD--~~G~~~~l~~~~~~~~~~~l---ilGaGGaarai~~aL~ 142 (272) T PRK12550 95 NTDGHLKAYNTD--YIAIAQLLEEYQVPPDAVVA---LRGSGGMAKAVAAALR 142 (272) T ss_pred EECCEEEEEECC--HHHHHHHHHHCCCCCCCEEE---EECCCHHHHHHHHHHH T ss_conf 559989999377--89999999970888677389---9736233899999999 No 406 >PRK13018 cell division protein FtsZ; Provisional Probab=54.92 E-value=15 Score=16.49 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=56.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC------C------CCCCC-----------------------HHH Q ss_conf 7999758867899999998629-9728999965300------7------86006-----------------------677 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER------H------NLRYR-----------------------EDL 46 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~------a------g~~~~-----------------------~~~ 46 (311) ||-|+|.=|.-+-.+-++...- ..+|+..+-.... + |+++. .+. T Consensus 29 kIkViGvGG~G~Navn~M~~~gi~gVefia~NTD~Q~L~~s~a~~ki~lG~~~T~GLGAG~~PeiG~~AAees~~~I~~~ 108 (387) T PRK13018 29 KIKVVGVGGAGNNTVNRLYDIGIEGAETIAINTDAQHLAMIKADKKILIGKTLTRGLGAGGDPEVGRKAAEESRDEIKEV 108 (387) T ss_pred CEEEEEECCCHHHHHHHHHHCCCCCCEEEEECCHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 68999768863999999998399983499981659998369998279857765788999888389999999829999999 Q ss_pred HCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf 4799899993------8983789999998612584898227630355543 Q gi|254780294|r 47 LNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG 90 (311) Q Consensus 47 ~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~ 90 (311) +++.|+||.+ ++.+.+.-.+..+.+.|+ ..|-=-+..|+++-. T Consensus 109 l~g~DmVFItAGmGGGTGTGAAPVIA~iAke~Ga-LtVavVT~PF~fEG~ 157 (387) T PRK13018 109 LKGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGA-LVIGVVTKPFKFEGR 157 (387) T ss_pred HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-EEEEEECCCHHHHHH T ss_conf 7589869999534785137778999999998199-399994489577768 No 407 >PRK07236 hypothetical protein; Provisional Probab=54.69 E-value=15 Score=16.47 Aligned_cols=30 Identities=10% Similarity=0.032 Sum_probs=24.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 07999758867899999998629972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) .||.|||| |.+|..+=-.|.++ -++++.+- T Consensus 7 ~kV~IVGa-GiaGL~~A~~L~~~-G~~v~v~E 36 (386) T PRK07236 7 PRAVVVGG-SLGGLFAANLLRRA-GWDVDVFE 36 (386) T ss_pred CCEEEECC-CHHHHHHHHHHHHC-CCCEEEEC T ss_conf 96899993-68999999999858-99989986 No 408 >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Probab=54.63 E-value=15 Score=16.46 Aligned_cols=110 Identities=13% Similarity=0.149 Sum_probs=58.7 Q ss_pred HHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHC---------CCCEEEECCCCC Q ss_conf 99999998629972899996530078600667747998999938983789999998612---------584898227630 Q gi|254780294|r 14 GLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKN---------GINSRIIDTSTA 84 (311) Q Consensus 14 G~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~---------g~~~~vid~ss~ 84 (311) ..++++.|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.++ |.. .|+|...+ T Consensus 3 k~~il~~l~~~~iiaVlr~~~~~~a~~~~~al~~gGi~~iEITl~tp~a~~~i~~l~~~~~~~p~~~iGaG-TV~~~e~~ 81 (209) T PRK06552 3 KSEILTKLKANGLVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVERYKDDPEVLIGAG-TVLDAVTA 81 (209) T ss_pred HHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEE-CCCCHHHH T ss_conf 89999999979979999728999999999999987998899967897599999999998177998189887-27489999 Q ss_pred HHH-HHHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 355-5431-100210004776520496077258421133112 Q gi|254780294|r 85 HRI-APGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 85 ~R~-~~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) .+. +.+. -++-|.+|++.++..+...+..-|||+|.+=++ T Consensus 82 ~~a~~aGA~FiVSP~~~~~v~~~a~~~~i~~iPG~~TpsEi~ 123 (209) T PRK06552 82 RQAILAGAQFIVSPSFNRETAKICNRYQIPYLPGCMTVTEIV 123 (209) T ss_pred HHHHHCCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH T ss_conf 999985998897699989999999985996417979999999 No 409 >PTZ00318 NADH dehydrogenase; Provisional Probab=54.15 E-value=15 Score=16.42 Aligned_cols=33 Identities=12% Similarity=0.204 Sum_probs=26.2 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC Q ss_conf 79997588678999999986299728999965300 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER 37 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ 37 (311) ||-|||+ |+.|-.+.+-|... ..++++++-+.+ T Consensus 12 rVVIlGg-GfaGl~~ak~L~~~-~~~VtLVdp~ny 44 (514) T PTZ00318 12 NVVVVGT-GWAGCYFARHLNPK-LANLHVLSTRNH 44 (514) T ss_pred EEEEECC-CHHHHHHHHHHCCC-CCCEEEECCCCC T ss_conf 5899997-69999999973868-982899999998 No 410 >PRK08013 hypothetical protein; Provisional Probab=54.01 E-value=15 Score=16.40 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=25.3 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 907--9997588678999999986299728999965 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |.+ |.|||| |.||..+--.|.++ -+.+..+-. T Consensus 1 M~~~DV~IvGa-GpvGl~lA~~La~~-G~~v~viE~ 34 (400) T PRK08013 1 MQSVDVAIVGG-GMVGLAVACGLQGS-GLRVAVLEH 34 (400) T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 99678899993-59999999999718-995899918 No 411 >PRK07588 hypothetical protein; Provisional Probab=53.35 E-value=16 Score=16.34 Aligned_cols=29 Identities=24% Similarity=0.282 Sum_probs=24.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 0799975886789999999862997289999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI 32 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l 32 (311) .||+|||| |..|..+=-.|.++ -++++.+ T Consensus 1 mkVlIvGa-GiaGLalA~~L~r~-G~~v~V~ 29 (391) T PRK07588 1 MKIAISGA-GIAGATLAHWLQRT-GHEPTLI 29 (391) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEE T ss_conf 97999993-28999999999868-9998999 No 412 >PRK09126 hypothetical protein; Provisional Probab=53.25 E-value=16 Score=16.33 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.0 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 907--9997588678999999986299728999965 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |.+ |.|||| |.||..+--.|.++ -+++..+-. T Consensus 1 Mm~~DV~IvGa-Gp~Gl~lA~~La~~-G~~v~viE~ 34 (392) T PRK09126 1 MMHSDILVVGA-GPAGLSFARSLAGS-GLKVTLIER 34 (392) T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 99899999992-58999999999868-998999908 No 413 >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed Probab=53.23 E-value=16 Score=16.32 Aligned_cols=11 Identities=0% Similarity=0.008 Sum_probs=6.4 Q ss_pred EEEECCCCCCC Q ss_conf 07725842113 Q gi|254780294|r 110 RYITNPGCYAT 120 (311) Q Consensus 110 ~iIanPnC~~t 120 (311) +++..+++..= T Consensus 134 Kia~~A~~~~D 144 (477) T PRK09310 134 KIAVSSTSSTD 144 (477) T ss_pred EEEEECCCHHH T ss_conf 99840387778 No 414 >PRK08163 salicylate hydroxylase; Provisional Probab=53.17 E-value=16 Score=16.32 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=25.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 0799975886789999999862997289999653 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) .+|+|||| |.+|..+--.|.++ .++++.+-.. T Consensus 5 ~~V~IVGa-GiaGL~lA~~L~r~-Gi~v~V~Er~ 36 (396) T PRK08163 5 TPVLIVGG-GIGGLAAALALARQ-GIKVKLLEQA 36 (396) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEECCC T ss_conf 84999897-88999999999978-9999999179 No 415 >KOG0069 consensus Probab=53.14 E-value=16 Score=16.32 Aligned_cols=13 Identities=8% Similarity=0.107 Sum_probs=5.9 Q ss_pred HHHHHHHHHHHHH Q ss_conf 0136899999999 Q gi|254780294|r 293 GKGASGAAIQNMD 305 (311) Q Consensus 293 ~KGAAgnAVQn~n 305 (311) ++.-|..++-|.+ T Consensus 310 ~~~m~~~v~~n~~ 322 (336) T KOG0069 310 REKMAEIVLNNLL 322 (336) T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 416 >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional Probab=53.05 E-value=16 Score=16.31 Aligned_cols=59 Identities=20% Similarity=0.257 Sum_probs=38.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE---CCCC---CCCCC--CHHHHCCCCEEEECCCCHHH Q ss_conf 07999758867899999998629972899996---5300---78600--66774799899993898378 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP---CEER---HNLRY--REDLLNAADVSILCLPDVAS 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~---s~~~---ag~~~--~~~~~~~~Divf~a~p~~~s 62 (311) +++||+|- |-+|+++.+++... ..++.... +.+. .|-++ -++.+.++|++-+.+|-... T Consensus 139 ktlGIiG~-G~IG~~vA~~~~~f-gm~Vi~yDP~~~~~~~~~~gv~~~~l~ell~~sD~IslH~Plt~e 205 (524) T PRK13581 139 KTLGVIGL-GRIGSEVAKRAKAF-GMKVIAYDPYISPERAAQLGVELVELDELLARADFITLHTPLTPE 205 (524) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCEEEEECCCCCHHHHHHCCCEEEEHHHHHHHCCEEEECCCCCHH T ss_conf 88999776-75789999999854-974788777644667987196686089973108899993678615 No 417 >pfam06263 consensus Probab=52.93 E-value=8.3 Score=18.05 Aligned_cols=88 Identities=16% Similarity=0.211 Sum_probs=51.6 Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH Q ss_conf 479989999389837899999986125848982-2763035554311002100047765204960772584211331124 Q gi|254780294|r 47 LNAADVSILCLPDVASLEIIQLIKKNGINSRII-DTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI 125 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la 125 (311) ..+..+++.+.|...+..-+.++.++|..+.++ ||=+ .++++-|- ....++.-++=.|.|=|.. + . T Consensus 113 ~p~AnlalISvpG~yAa~eA~~AL~~gl~VmlFSDNVs---~edE~~LK--------~~A~ekGLlvMGPDCGTai-i-~ 179 (514) T pfam06263 113 LPEANLALISVPGEYAAAEAEKALNLGLHVMLFSDNVS---VEDEVALK--------QLAHEKGLLVMGPDCGTAI-I-N 179 (514) T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHH--------HHHHHCCCEEECCCCCHHH-H-C T ss_conf 89998799962708899999999987993799749997---79999999--------9998779488889862244-2-5 Q ss_pred HHHHHHHCCCCCCCCEEEEEECC Q ss_conf 78888850345565026765123 Q gi|254780294|r 126 LRPLRKAKLLPDRYPITINAVSG 148 (311) Q Consensus 126 L~PL~~~~~i~~~~~~~~~~~sg 148 (311) =.||.=...+.+.. |-+.+.|| T Consensus 180 GvpLaFaNvV~~G~-IGiVgASG 201 (514) T pfam06263 180 GVPLAFANVVRRGD-IGVVGASG 201 (514) T ss_pred CCCHHHHCCCCCCC-CEEEECCC T ss_conf 85134204456787-11785166 No 418 >PRK06091 membrane protein FdrA; Validated Probab=52.88 E-value=8.3 Score=18.04 Aligned_cols=88 Identities=18% Similarity=0.289 Sum_probs=49.6 Q ss_pred HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEE-CCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHHH Q ss_conf 479989999389837899999986125848982-2763035554311002100047765204960772584211331124 Q gi|254780294|r 47 LNAADVSILCLPDVASLEIIQLIKKNGINSRII-DTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAI 125 (311) Q Consensus 47 ~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi-d~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~la 125 (311) ..+..+++.+.|...+..-+.++.++|..+.++ ||=+ .++++-|- ....++.-++=.|.|=|.. + . T Consensus 115 ~p~AnlalISVpG~yAa~EA~~AL~~gl~VmlFSDNVs---~edE~~LK--------~~A~ekGLlvMGPDCGTaI-I-~ 181 (555) T PRK06091 115 LPDANLALISVAGEYAAELAEQALDRNLNVMMFSDNVT---LEDEIQLK--------TRAREKGLLVMGPDCGTAM-I-A 181 (555) T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCC---HHHHHHHH--------HHHHHCCCEEECCCCCHHH-H-C T ss_conf 89998799961707779999999987994799759997---78999999--------9998779388889863134-1-6 Q ss_pred HHHHHHHCCCCCCCCEEEEEECC Q ss_conf 78888850345565026765123 Q gi|254780294|r 126 LRPLRKAKLLPDRYPITINAVSG 148 (311) Q Consensus 126 L~PL~~~~~i~~~~~~~~~~~sg 148 (311) =.||.=...+.+-. |-+.+.|| T Consensus 182 GvpLaFANvV~~G~-IGIVgASG 203 (555) T PRK06091 182 GTPLAFANVMPEGN-IGVIGASG 203 (555) T ss_pred CCCHHHCCCCCCCC-CEEEECCC T ss_conf 85124204456887-12795166 No 419 >COG0579 Predicted dehydrogenase [General function prediction only] Probab=52.65 E-value=16 Score=16.27 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=27.6 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEE Q ss_conf 907999758867899999998629-972899996 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIP 33 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~ 33 (311) |+.|.|||| |-+|..+-..|.++ |..++.++= T Consensus 3 ~~DvvIIGg-GI~G~a~a~~Ls~~~p~~~V~llE 35 (429) T COG0579 3 DYDVVIIGG-GIMGAATAYELSEYEPDLSVALLE 35 (429) T ss_pred CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 322999897-389899999999738896599997 No 420 >KOG1399 consensus Probab=52.40 E-value=16 Score=16.24 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=23.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 0799975886789999999862997289999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI 32 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l 32 (311) .+|||||| |.-|....+-|.++ ..+++.+ T Consensus 7 ~~vaIIGA-G~sGL~~ar~l~~~-g~~v~vf 35 (448) T KOG1399 7 KDVAVIGA-GPAGLAAARELLRE-GHEVVVF 35 (448) T ss_pred CCEEEECC-CHHHHHHHHHHHHC-CCCCEEE T ss_conf 85489785-66888999999877-9983699 No 421 >cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene. Probab=52.29 E-value=16 Score=16.23 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=77.2 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHH-HH-HHHHHHHCCCCEEEECC Q ss_conf 99975886789999999862997289999653007860066774799899993898378-99-99998612584898227 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVAS-LE-IIQLIKKNGINSRIIDT 81 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s-~~-~~~~~~~~g~~~~vid~ 81 (311) |-|+|-.|..=..++..|...+..+ .....|-.......+++.+.++-++.... +. |-.-+.....-++|||. T Consensus 2 ililGLd~aGKTTil~~l~~~~~~~-----~~PT~G~~~~~~~~~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDs 76 (167) T cd04161 2 LLTVGLDNAGKTTLVSALQGEIPKK-----VAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDS 76 (167) T ss_pred EEEEEECCCCHHHHHHHHCCCCCCC-----CCCCCCCCEEEEEECCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEEC T ss_conf 8999008998899999982899876-----50877731799998999999998998778889999873477657999855 Q ss_pred CCCHHHHHHHHHCCCCCCHHHHHHCCCCE--EEEC----CCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCC Q ss_conf 63035554311002100047765204960--7725----84211331124788888503455650267651233335610 Q gi|254780294|r 82 STAHRIAPGWVYGFPEMDKSQKEKIRSAR--YITN----PGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKK 155 (311) Q Consensus 82 ss~~R~~~~vpl~vPEvN~~~~~~~~~~~--iIan----PnC~~t~~~laL~PL~~~~~i~~~~~~~~~~~sg~sgaG~~ 155 (311) |..-|+..-.-..--=+... .+++.+ +++| |+|.+..-+.-..-|.+... .......++.-|+.+|-|.. T Consensus 77 sD~~rl~eak~~L~~lL~~~---~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~-~~~~~~~I~~csA~tG~G~~ 152 (167) T cd04161 77 SDDDRVQEVKEILRELLQHP---RVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVN-ENKSLCHIEPCSAIEGLGKK 152 (167) T ss_pred CCHHHHHHHHHHHHHHHCCH---HHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCC-CCCCEEEEEECEEECCCCCC T ss_conf 75889999999999996588---778995999988657615899999998819742408-99863799957644488878 No 422 >PTZ00052 thioredoxin reductase; Provisional Probab=52.03 E-value=16 Score=16.20 Aligned_cols=19 Identities=16% Similarity=0.288 Sum_probs=6.5 Q ss_pred EEEECCCCHHHHHHHHHHHC Q ss_conf 99975886789999999862 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQ 23 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~ 23 (311) +.|+|+ |-.|..--...++ T Consensus 44 vvVIG~-GpgG~~AA~~Aa~ 62 (541) T PTZ00052 44 YVVIGG-GPGGMASAKEAAA 62 (541) T ss_pred EEEECC-CHHHHHHHHHHHH T ss_conf 899997-8899999999998 No 423 >KOG1429 consensus Probab=51.77 E-value=15 Score=16.41 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=20.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC Q ss_conf 07999758867899999998629 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h 24 (311) +||.|.||-|++|--|.+-|... T Consensus 28 lrI~itGgaGFIgSHLvdkLm~e 50 (350) T KOG1429 28 LRILITGGAGFIGSHLVDKLMTE 50 (350) T ss_pred EEEEEECCCCHHHHHHHHHHHHC T ss_conf 07999657405889999999746 No 424 >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] Probab=50.69 E-value=14 Score=16.71 Aligned_cols=17 Identities=29% Similarity=0.540 Sum_probs=10.3 Q ss_pred EECCCCCCCCCCCHHCC Q ss_conf 51233335610000001 Q gi|254780294|r 145 AVSGYTGGGKKLISRME 161 (311) Q Consensus 145 ~~sg~sgaG~~~~~~~~ 161 (311) +..|-||.||+..-.+- T Consensus 368 AIlG~SGsGKSTllqLl 384 (573) T COG4987 368 AILGRSGSGKSTLLQLL 384 (573) T ss_pred EEECCCCCCHHHHHHHH T ss_conf 88779998789999999 No 425 >COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism] Probab=50.59 E-value=17 Score=16.06 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=59.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 90799975886789999999862997289999653007860066774799899993898378999999861258489822 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) |.+|-|+|.|+- ++.|.+-|..+|... .++|-...|.+..+.... +.++ +-.-+......+.+.+. ..+|| T Consensus 2 ~~~ilvlGGT~D-ar~la~~L~~~~~~~--~~ss~t~~g~~l~~~~~~----~~~~-G~l~~e~l~~~l~e~~i-~llID 72 (257) T COG2099 2 MMRILLLGGTSD-ARALAKKLAAAPVDI--ILSSLTGYGAKLAEQIGP----VRVG-GFLGAEGLAAFLREEGI-DLLID 72 (257) T ss_pred CCEEEEEECCHH-HHHHHHHHHCCCCCE--EEEECCCCCCCCHHCCCC----EEEC-CCCCHHHHHHHHHHCCC-CEEEE T ss_conf 835999826389-999999862068617--999703444241110588----6652-76887899999997498-88997 Q ss_pred CCCCHH--H---------HHHHHHCCCCCCHHHH Q ss_conf 763035--5---------5431100210004776 Q gi|254780294|r 81 TSTAHR--I---------APGWVYGFPEMDKSQK 103 (311) Q Consensus 81 ~ss~~R--~---------~~~vpl~vPEvN~~~~ 103 (311) .|-.|= . +-++||+.-|-.++.. T Consensus 73 ATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~ 106 (257) T COG2099 73 ATHPYAARISQNAARAAKETGIPYLRLERPPWAP 106 (257) T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 8875799998999999998599679987775545 No 426 >PRK07411 hypothetical protein; Validated Probab=50.38 E-value=17 Score=16.04 Aligned_cols=87 Identities=10% Similarity=-0.054 Sum_probs=49.5 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCCC------------------------C Q ss_conf 07999758867899999998629972899---------------99653007860------------------------0 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNLR------------------------Y 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~~------------------------~ 42 (311) .+|.|+|| |=.|.-.+.-|+.--.-+|. .+...+..|+. + T Consensus 39 a~VlvvG~-GGLG~p~~~yLaaaGvG~i~ivD~D~ve~sNL~RQ~l~~~~~vG~~K~~~a~~~l~~lnp~~~i~~~~~~l 117 (390) T PRK07411 39 ASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDIVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRL 117 (390) T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHCCCCCCEEHHHHC T ss_conf 97899888-72379999999983897599974899462347854366620079718999999999868986421034325 Q ss_pred C----HHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHH Q ss_conf 6----677479989999389837899999986125848982276303555431 Q gi|254780294|r 43 R----EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGW 91 (311) Q Consensus 43 ~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~v 91 (311) + .+.++++|+|+=|+++-.++-....+...-. +..| .++.+|++-.+ T Consensus 118 ~~~na~~li~~~DvvvD~tDNf~tRylindac~~~~-~PlV-~ga~~~~~Gqv 168 (390) T PRK07411 118 SSENALDILAPYDVVVDGTDNFPTRYLVNDACVLLN-KPNV-YGSIFRFEGQA 168 (390) T ss_pred CHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC-CCEE-EEECCCCEEEE T ss_conf 552488742288689967888899999899999969-9879-97647778999 No 427 >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation. Probab=50.22 E-value=16 Score=16.22 Aligned_cols=35 Identities=11% Similarity=0.337 Sum_probs=28.5 Q ss_pred EEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCC Q ss_conf 999758867899999998629---972899996530078 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHN 39 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag 39 (311) +.|||= ||||-++|+-+..+ ..|+|+.|+++.+.. T Consensus 1 LvlvGn-GM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~~ 38 (813) T TIGR02374 1 LVLVGN-GMVGHRLIEEVLKKDDKDEFEITVFGEEPHPA 38 (813) T ss_pred CEEECC-CCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC T ss_conf 978704-74103477767512101773089982588954 No 428 >PRK09986 DNA-binding transcriptional activator XapR; Provisional Probab=49.59 E-value=16 Score=16.33 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=32.1 Q ss_pred CEEEEECCC--CHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHH Q ss_conf 079997588--67899999998629972899996530078600667747998999938983789 Q gi|254780294|r 2 YKIFIDGEH--GTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASL 63 (311) Q Consensus 2 ~kVaIvGAT--G~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~ 63 (311) ++||+++.. +..-..+.+...+||.+++.......+ .-+....-.++|++|...+..... T Consensus 83 l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~v~i~~~~~~--~~~~~l~~~~~D~a~~~~~~~~~~ 144 (278) T PRK09986 83 IELGVVGTALWGRMRPAMRHFLKENPNVEVLFREKSPS--MQMALLERRELDAGIWRMALEPNP 144 (278) T ss_pred EEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEEECCHH--HHHHHHHCCCCCEEEECCCCCCCC T ss_conf 36874216888764289999998789839999978869--999999779975899637777887 No 429 >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=49.31 E-value=18 Score=15.94 Aligned_cols=63 Identities=19% Similarity=0.049 Sum_probs=37.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECC-CCCC-----C---CCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 0799975886789999999862997289999653-0078-----6---006677479989999389837899999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE-ERHN-----L---RYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~-~~ag-----~---~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .||+|+|. |-.|+-..+.|.++-.+. .+..+ .... . ...+....++|+++.+=+=....++.. T Consensus 1 mKi~V~Gl-G~sG~s~a~~L~~~g~~~--i~dD~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~SPGI~~~~p~~~ 72 (401) T PRK03815 1 MKISLFGY-GKTTKALARFFVKNGGVD--IYDDKFTEPKKDEEGNLLLPSNDFDPNKSDLEIPSPGIPPSHPLIQ 72 (401) T ss_pred CEEEEEEE-CHHHHHHHHHHHHCCCEE--EEECCCCCCCHHHHHCCCCCHHHCCCHHCCEEEECCCCCCCCHHHH T ss_conf 93999847-771899999999487979--9989998622246404006843358012868998998599879999 No 430 >PRK08219 short chain dehydrogenase; Provisional Probab=48.97 E-value=18 Score=15.91 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=24.3 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 9079997588678999999986299728999965 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) |+-+-|-|||+=.|+++.+.|.+.- .+...+. T Consensus 3 mKvalITGas~GIG~aia~~la~~g--~vv~~~r 34 (226) T PRK08219 3 MPTALITGASRGIGAAIARALARTH--TLLLAGR 34 (226) T ss_pred CCEEEEECCCHHHHHHHHHHHHHCC--CEEEEEC T ss_conf 8999992846499999999999699--8999989 No 431 >PRK06416 dihydrolipoamide dehydrogenase; Reviewed Probab=48.36 E-value=19 Score=15.85 Aligned_cols=30 Identities=23% Similarity=0.366 Sum_probs=18.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 07999758867899999998629972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) |-|.|+|+ |-.|...-..+.++ -..+..+- T Consensus 5 YDviVIG~-GpaG~~aA~~aa~~-G~kV~liE 34 (462) T PRK06416 5 YDVIVIGA-GPGGYVAAIRAAQL-GLKVAIVE 34 (462) T ss_pred CCEEEECC-CHHHHHHHHHHHHC-CCEEEEEE T ss_conf 99899998-88999999999968-99399996 No 432 >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] Probab=47.90 E-value=19 Score=15.80 Aligned_cols=38 Identities=13% Similarity=-0.002 Sum_probs=27.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCC Q ss_conf 7999758867899999998629--9728999965300786 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNL 40 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~ 40 (311) +|||+|+||..--.|+.|++.. |..--.++......+. T Consensus 27 ~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231) T COG3840 27 IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231) T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCC T ss_conf 7999778886578899998742477874589857214768 No 433 >PRK05976 dihydrolipoamide dehydrogenase; Validated Probab=47.78 E-value=19 Score=15.79 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=15.3 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 99975886789999999862997289999 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSI 32 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l 32 (311) |.|+|+ |-.|...-..+.+. -.++..+ T Consensus 7 viVIG~-GpaG~~AA~~aa~~-G~kv~li 33 (464) T PRK05976 7 LLIIGG-GPGGYVAAIRAGQL-GLKTALV 33 (464) T ss_pred EEEECC-CHHHHHHHHHHHHC-CCEEEEE T ss_conf 999997-88999999999978-9929999 No 434 >PRK12549 shikimate 5-dehydrogenase; Reviewed Probab=47.71 E-value=19 Score=15.79 Aligned_cols=16 Identities=19% Similarity=0.268 Sum_probs=9.3 Q ss_pred ECCCCCCCCCCCHHCC Q ss_conf 1233335610000001 Q gi|254780294|r 146 VSGYTGGGKKLISRME 161 (311) Q Consensus 146 ~sg~sgaG~~~~~~~~ 161 (311) +-|.+|++++..-.+. T Consensus 132 ilGaGGaa~ai~~al~ 147 (284) T PRK12549 132 QLGAGGAGAAVAHALL 147 (284) T ss_pred EECCCCHHHHHHHHHH T ss_conf 9656616899999999 No 435 >PRK07538 hypothetical protein; Provisional Probab=47.66 E-value=19 Score=15.78 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=24.4 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 07999758867899999998629972899996 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) +||.|||| |.+|..+=-.|.++ -++++.+- T Consensus 1 m~V~IvGa-G~aGL~lA~~L~~~-Gi~v~V~E 30 (413) T PRK07538 1 MKVLIAGG-GIGGLTLALTLHQR-GIEVEVFE 30 (413) T ss_pred CEEEEECC-CHHHHHHHHHHHHC-CCCEEEEC T ss_conf 98999990-58999999999978-99989993 No 436 >COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism] Probab=47.46 E-value=19 Score=15.76 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 07999758867899999998629972899996530 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE 36 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~ 36 (311) +||+++|| |.-|+-++.+...-|-+++..++..+ T Consensus 18 iRVGlIGA-G~mG~~ivtQi~~m~Gm~vvaisd~~ 51 (438) T COG4091 18 IRVGLIGA-GEMGTGIVTQIASMPGMEVVAISDRN 51 (438) T ss_pred EEEEEECC-CCCCHHHHHHHHHCCCCEEEEEECCC T ss_conf 59987545-41106799987506883699984246 No 437 >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated Probab=47.12 E-value=20 Score=15.73 Aligned_cols=32 Identities=22% Similarity=0.346 Sum_probs=23.7 Q ss_pred CCE--EEEECCCCHHHHHHHHHHHC--CCCEEEEEEE Q ss_conf 907--99975886789999999862--9972899996 Q gi|254780294|r 1 MYK--IFIDGEHGTTGLKIRSRIVQ--RKDLCLLSIP 33 (311) Q Consensus 1 M~k--VaIvGATG~vG~~li~lL~~--hp~~~l~~l~ 33 (311) |.| |.|||| |.+|..+--.|.+ |..+.+..+- T Consensus 1 M~~~DV~IvGa-Gp~Gl~lAl~L~~~g~~~~~v~viE 36 (395) T PRK05732 1 MSRMDVIIVGG-GMAGATLALALSRLSHGRLPVALIE 36 (395) T ss_pred CCCCCEEEECC-CHHHHHHHHHHHHCCCCCCEEEEEE T ss_conf 97189899993-8999999999996188997499993 No 438 >TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding. Probab=47.03 E-value=20 Score=15.72 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=59.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCCCCC---------------------------CCCH------- Q ss_conf 907999758867899999998629--9728999965300786---------------------------0066------- Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEERHNL---------------------------RYRE------- 44 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~ag~---------------------------~~~~------- 44 (311) |+||+|.|--|..-..|++-|.++ ...++..++..=+.-. .+++ T Consensus 1 ~~~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas~nl~ 80 (199) T TIGR00101 1 MVKIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDASLNLE 80 (199) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH T ss_conf 93666504777646899999999887406677873110012468888764126622267741589873001000212188 Q ss_pred ------HHHCCCCEEEE-CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHH Q ss_conf ------77479989999-38983789999998612584898227630355 Q gi|254780294|r 45 ------DLLNAADVSIL-CLPDVASLEIIQLIKKNGINSRIIDTSTAHRI 87 (311) Q Consensus 45 ------~~~~~~Divf~-a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~ 87 (311) .-|.++|++|. +-++..|..|.|.+.+.- .+|||-+.--+. T Consensus 81 a~~~~~~rf~~~~~~~~esGGdnl~atf~P~l~d~t--~~vidva~G~ki 128 (199) T TIGR00101 81 AVEELEARFPDLELVFIESGGDNLSATFSPELADLT--IFVIDVAEGDKI 128 (199) T ss_pred HHHHHHHCCCCEEEEEEECCCCCCEEECCCCEEEEE--EEEEEECCCCCC T ss_conf 999886215640489983288620000276402367--889972058745 No 439 >pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood. Probab=46.89 E-value=17 Score=16.14 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC Q ss_conf 907999758867899999998629 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h 24 (311) |.||+|||-++..=-.|+..|... T Consensus 1 MkkVaivGrpNvGKSTLlN~L~g~ 24 (143) T pfam10662 1 MKKIMLIGRSGCGKTTLTQALNGE 24 (143) T ss_pred CCEEEEECCCCCCHHHHHHHHCCC T ss_conf 975999899999999999997599 No 440 >cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Probab=46.54 E-value=20 Score=15.67 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=31.7 Q ss_pred CEEEEEEECCCCCCC--CCCHHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 728999965300786--0066774--799899993898378999999861258489822 Q gi|254780294|r 26 DLCLLSIPCEERHNL--RYREDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 26 ~~~l~~l~s~~~ag~--~~~~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) .+|+..........+ +.-.... .+++.++-+..++++....+.+.+.+ +.++. T Consensus 40 ~ielv~~D~~~~p~~a~~~a~~Li~~~~V~aviG~~~S~~~~A~~~~~~~~~--vp~i~ 96 (347) T cd06335 40 KLELVERDDRGNPARGLQNAQELAADEKVVAVLGGLHTPVALANLEFIQQNK--IPLIG 96 (347) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCC--EEEEC T ss_conf 8799984799998999999999995499268745777223455321577579--43863 No 441 >TIGR01001 metA homoserine O-succinyltransferase; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase (2.3.1.46 from EC), catalyses the first step in the biosynthesis of methionine.Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine. ; GO: 0008415 acyltransferase activity, 0019281 methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm. Probab=45.76 E-value=21 Score=15.60 Aligned_cols=27 Identities=4% Similarity=0.073 Sum_probs=21.1 Q ss_pred HHHHHHHHHCCC-CEEEEEEECCCCCCC Q ss_conf 999999986299-728999965300786 Q gi|254780294|r 14 GLKIRSRIVQRK-DLCLLSIPCEERHNL 40 (311) Q Consensus 14 G~~li~lL~~hp-~~~l~~l~s~~~ag~ 40 (311) =.+++|||++-| +++|.+|.-+++.+| T Consensus 51 E~Q~LrLL~NsPLQV~i~LL~~~~~~~k 78 (305) T TIGR01001 51 ENQLLRLLSNSPLQVNITLLRIDSRKSK 78 (305) T ss_pred HHHHHHHHCCCCCEEEEEEEEECCCCCC T ss_conf 9999998618984045687543277988 No 442 >COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms] Probab=45.54 E-value=21 Score=15.58 Aligned_cols=83 Identities=12% Similarity=0.177 Sum_probs=61.2 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCE--E Q ss_conf 0799975886789999999862997289999653007860066774799899993--89837899999986125848--9 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINS--R 77 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~--~ 77 (311) +||.||-=-=+|.+---+.+...|.|.+...|++-..++.+-.+. +.|++++- +|++-.-++.+.+.+..+.+ . T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224) T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224) T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH--CCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEE T ss_conf 928997086589999999997389953898606499999999840--899799960267985077999998468997889 Q ss_pred EECCCCCHH Q ss_conf 822763035 Q gi|254780294|r 78 IIDTSTAHR 86 (311) Q Consensus 78 vid~ss~~R 86 (311) +|+.+++-+ T Consensus 79 ~iTAA~d~~ 87 (224) T COG4565 79 VITAASDME 87 (224) T ss_pred EEECCCHHH T ss_conf 995344378 No 443 >cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC Probab=45.53 E-value=21 Score=15.58 Aligned_cols=55 Identities=15% Similarity=0.139 Sum_probs=30.4 Q ss_pred CEEEEEEECCCCC--CCCCCHHH-HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 7289999653007--86006677-479989999389837899999986125848982276 Q gi|254780294|r 26 DLCLLSIPCEERH--NLRYREDL-LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 26 ~~~l~~l~s~~~a--g~~~~~~~-~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) .+++......... .....+.. -+++++++-......+....+.+.+.+ +.+|.-+ T Consensus 40 ~i~l~~~D~~~~~~~~~~~~~~l~~~~v~~iiG~~~s~~~~~~~~~~~~~~--ip~i~~~ 97 (298) T cd06268 40 KIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAG--VPLISPG 97 (298) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCC--CEEEECC T ss_conf 889999679999899999999863279739974775788899999998719--2188057 No 444 >TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component; InterPro: IPR011786 Sulphite reductase (NADPH) catalyzes a six electron reduction of sulphite to sulphide in prokaryotic organisms. It is a complex oligomeric enzyme composed of two different peptides with a subunit composition of alpha(8)-beta(4). The alpha component, encoded by cysJ, is a flavoprotein containing both FMN and FAD, while the beta component, encoded by cysI, is a siroheme, iron-sulphur protein.; GO: 0004783 sulfite reductase (NADPH) activity, 0050661 NADP binding, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process, 0009337 sulfite reductase complex (NADPH). Probab=45.43 E-value=11 Score=17.29 Aligned_cols=21 Identities=10% Similarity=0.050 Sum_probs=11.0 Q ss_pred CCCHHHHHHHHHCCCCCCHHH Q ss_conf 630355543110021000477 Q gi|254780294|r 82 STAHRIAPGWVYGFPEMDKSQ 102 (311) Q Consensus 82 ss~~R~~~~vpl~vPEvN~~~ 102 (311) .++||+.+.==++|.+|.+.. T Consensus 377 ~GdfRiT~NQNlIiA~V~e~~ 397 (550) T TIGR02041 377 KGDFRITSNQNLIIANVPEGG 397 (550) T ss_pred CCCEEECCCCCEEEECCCCHH T ss_conf 997534477637884278423 No 445 >PRK07261 topology modulation protein; Provisional Probab=45.43 E-value=21 Score=15.57 Aligned_cols=31 Identities=26% Similarity=0.177 Sum_probs=26.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC---CCEEEEEE Q ss_conf 07999758867899999998629---97289999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSI 32 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l 32 (311) .||.|+|.+|-.=..|-+.|++. |.+++-.+ T Consensus 1 MrI~IiG~sGsGKSTlAr~L~~~~~ip~~~LD~l 34 (171) T PRK07261 1 MKIAIIGYSGSGKSTLARFLGQHYNCPVLHLDQL 34 (171) T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCCEEEECCE T ss_conf 9899988999868999999999879797970227 No 446 >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] Probab=44.31 E-value=22 Score=15.46 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=26.4 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCC Q ss_conf 907999758867899999998629972899996530 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEE 36 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~ 36 (311) +.+|+|||+ |.+|.-.--.|.++.. ++..+.... T Consensus 4 ~~~vvIIGg-Gi~Gls~A~~La~~G~-~V~vie~~~ 37 (387) T COG0665 4 KMDVVIIGG-GIVGLSAAYYLAERGA-DVTVLEAGE 37 (387) T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC-EEEEEECCC T ss_conf 643999898-6999999999997699-199991798 No 447 >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. Probab=44.31 E-value=22 Score=15.46 Aligned_cols=80 Identities=13% Similarity=0.104 Sum_probs=42.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE---------------ECCCCCCCCC------------------------ Q ss_conf 0799975886789999999862997289999---------------6530078600------------------------ Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------------PCEERHNLRY------------------------ 42 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l---------------~s~~~ag~~~------------------------ 42 (311) .||-|+|.+| +|.|..+=|.=--.-.++.+ -+++..|+.- T Consensus 21 s~VLiiG~~g-lG~EiaKNLvLaGV~svti~D~~~v~~~DLg~nFfl~~~diGk~Raea~~~~L~eLNp~V~v~~~~~~~ 99 (425) T cd01493 21 AHVCLLNATA-TGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEESP 99 (425) T ss_pred CCEEEECCCH-HHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHCCCCCEEEEECCH T ss_conf 9399999971-199999872132897699995991878885766156677858839999999999847868547870687 Q ss_pred ------CHHHHCCCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf ------66774799899993-89837899999986125848982276 Q gi|254780294|r 43 ------REDLLNAADVSILC-LPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 43 ------~~~~~~~~Divf~a-~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) ..+.+.+.|+|+++ +|.....++-...++.+....+.|.. T Consensus 100 ~~~~~~~~~~~~~f~vVV~t~~~~~~~~~in~~cr~~~i~fI~~~~~ 146 (425) T cd01493 100 EALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSY 146 (425) T ss_pred HHHHHCCHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEE T ss_conf 88642687675283389982889999999999999869978999824 No 448 >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional Probab=44.09 E-value=22 Score=15.44 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=43.1 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCC-----------CCCCCC-----HHHH-CCCCEEEECCCCHHHHH Q ss_conf 079997588678999999986299728999965300-----------786006-----6774-79989999389837899 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEER-----------HNLRYR-----EDLL-NAADVSILCLPDVASLE 64 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~-----------ag~~~~-----~~~~-~~~Divf~a~p~~~s~~ 64 (311) .||.|+|. |-.|.-..++|.++- .++....++.. .|-++. ...+ .++|+++.+-+=..... T Consensus 10 k~i~viGl-G~sG~s~a~~L~~~G-~~V~~~D~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~d~vV~SPgI~~~~p 87 (450) T PRK02472 10 KKVLVLGL-AKSGYAAAKLLHKLG-ANVTVNDGKPFSENPAAQELLEEGIKVICGSHPLELLDENFDLMVKNPGIPYDNP 87 (450) T ss_pred CEEEEEEE-CHHHHHHHHHHHHCC-CEEEEEECCCCCCCHHHHHHHHCCCEEEECCCHHHHCCCCCCEEEECCCCCCCCH T ss_conf 98999977-899999999999886-9899984886657989999996799899788807860578879998998799999 Q ss_pred HHHHHHHCCCC Q ss_conf 99998612584 Q gi|254780294|r 65 IIQLIKKNGIN 75 (311) Q Consensus 65 ~~~~~~~~g~~ 75 (311) +...+.++|.. T Consensus 88 ~~~~a~~~~i~ 98 (450) T PRK02472 88 MVEEALEKGIP 98 (450) T ss_pred HHHHHHHCCCC T ss_conf 99999986996 No 449 >TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport. Probab=43.83 E-value=18 Score=15.90 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=16.6 Q ss_pred EEEECCCCHHHHHHHHHHHCC--CCE Q ss_conf 999758867899999998629--972 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQR--KDL 27 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~h--p~~ 27 (311) |||||=||..=..|+-||++- |.. T Consensus 364 vAIVGPTGAGKTTLiNLLQRVydP~~ 389 (592) T TIGR01192 364 VAIVGPTGAGKTTLINLLQRVYDPKV 389 (592) T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCC T ss_conf 89877899717899887753106986 No 450 >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=43.43 E-value=22 Score=15.38 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=24.5 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 99975886789999999862997289999653 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |.|||| |.||..+--.|.++ .+++..+..+ T Consensus 8 V~IvGa-Gp~Gl~lAl~La~~-G~~v~lie~~ 37 (386) T PRK07494 8 IAVSGG-GPAGLAAAIALASA-GASVALVAPA 37 (386) T ss_pred EEEECC-CHHHHHHHHHHHHC-CCCEEEEECC T ss_conf 899990-68999999999878-9988999579 No 451 >PRK13059 putative lipid kinase; Reviewed Probab=43.29 E-value=22 Score=15.36 Aligned_cols=83 Identities=14% Similarity=0.024 Sum_probs=51.6 Q ss_pred CCEEEEEC--CCC-----HHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHC Q ss_conf 90799975--886-----7899999998629972899996-530078600667747998999938983789999998612 Q gi|254780294|r 1 MYKIFIDG--EHG-----TTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKN 72 (311) Q Consensus 1 M~kVaIvG--ATG-----~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~ 72 (311) |.|+.++= ++| -.-.+++++|+++ .+++..+. .+..+.....+..-+++|+++-+-+++.-.+.+..+.+. T Consensus 1 Mkk~~~I~NP~sG~g~~~~~~~~i~~~l~~~-~~~~~~~~t~~~~~~~~a~~~~~~~~d~vv~~GGDGTinevvngl~~~ 79 (294) T PRK13059 1 MKKVKFIYNPYSGENAIISELDKVIEIHQKY-GYLVVPYRISLGCDLKEAFKDIDESYKYILIAGGDGTVDNVVNAMKKL 79 (294) T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHC T ss_conf 9779999997668866688999999999977-988999985356089999998874898899995678899999999856 Q ss_pred CCCE--EEECCCCC Q ss_conf 5848--98227630 Q gi|254780294|r 73 GINS--RIIDTSTA 84 (311) Q Consensus 73 g~~~--~vid~ss~ 84 (311) +... -||-..+. T Consensus 80 ~~~~~lgiiP~GTg 93 (294) T PRK13059 80 NIDIPIGILPVGTA 93 (294) T ss_pred CCCCCEEEEECCCC T ss_conf 99985799826775 No 452 >PRK08774 consensus Probab=43.15 E-value=23 Score=15.35 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=26.2 Q ss_pred CCE---EEEECCCCHHHHHHHHHHHCCCCEEEEEEECC Q ss_conf 907---99975886789999999862997289999653 Q gi|254780294|r 1 MYK---IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCE 35 (311) Q Consensus 1 M~k---VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~ 35 (311) |.+ |.|||| |.||..+--.|.++ .+.+..+-.+ T Consensus 1 M~~~~DVlIVGg-GpvGl~lA~~La~~-G~~v~liE~~ 36 (402) T PRK08774 1 MTHPHDVLIVGG-GLVGSSLAIALDRI-GLDVGLVEAT 36 (402) T ss_pred CCCCCCEEEECC-CHHHHHHHHHHHCC-CCCEEEEECC T ss_conf 989987899991-69999999999668-9978999379 No 453 >PRK12743 acetoin dehydrogenase; Provisional Probab=42.87 E-value=23 Score=15.32 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=47.4 Q ss_pred CCEEEE-ECCCCHHHHHHHHHHHCCCCEEEEEEE-CCCCCCCCCC-HHHHCCCCEEEECCCC---HHHHHHHHHHHH-CC Q ss_conf 907999-758867899999998629972899996-5300786006-6774799899993898---378999999861-25 Q gi|254780294|r 1 MYKIFI-DGEHGTTGLKIRSRIVQRKDLCLLSIP-CEERHNLRYR-EDLLNAADVSILCLPD---VASLEIIQLIKK-NG 73 (311) Q Consensus 1 M~kVaI-vGATG~vG~~li~lL~~hp~~~l~~l~-s~~~ag~~~~-~~~~~~~Divf~a~p~---~~s~~~~~~~~~-~g 73 (311) |.||+| -||++=.|+..-+.|.++- .++.... +++..-++.. +..-.+..+.++..+- +..+.+...+.+ -| T Consensus 1 M~KValITGgs~GIG~a~a~~la~~G-a~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~~~G 79 (253) T PRK12743 1 MAQVAIVTASDSGIGKACALLLAQQG-FDIGITWHSDEEGAKETAEEVVSHGVRAEIVHLDLSNLPEGAQAIEKLIQRLG 79 (253) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCC T ss_conf 99989990758899999999999879-98999748997999999999994599189999048999999999999999819 Q ss_pred CCEEEECCCCCHHHH Q ss_conf 848982276303555 Q gi|254780294|r 74 INSRIIDTSTAHRIA 88 (311) Q Consensus 74 ~~~~vid~ss~~R~~ 88 (311) .--.+|.|++..... T Consensus 80 ~iDilVNnAG~~~~~ 94 (253) T PRK12743 80 RLDVLVNNAGAMTKA 94 (253) T ss_pred CCCEEEECCCCCCCC T ss_conf 998999899899999 No 454 >PRK13949 shikimate kinase; Provisional Probab=42.86 E-value=23 Score=15.32 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=26.9 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC Q ss_conf 907999758867899999998629---9728999965300786006 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~ 43 (311) |.||-++|-.|..=..+=+.|+++ |.+++-.+= ++..|+++. T Consensus 1 Mk~I~LiG~mGsGKstiGk~La~~l~~~fiD~D~~I-e~~~g~sI~ 45 (169) T PRK13949 1 MARIFLVGYMGAGKTTLGKALARELGLSFIDLDFFI-ENRFHKTVG 45 (169) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECCHHH-HHHHCCCHH T ss_conf 983899799999889999999999599979784999-998599999 No 455 >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional Probab=42.83 E-value=23 Score=15.32 Aligned_cols=87 Identities=24% Similarity=0.383 Sum_probs=53.0 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEE--------ECCCCC-----CCCCC---------------------HHHH Q ss_conf 0799975886789999999862997289999--------653007-----86006---------------------6774 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI--------PCEERH-----NLRYR---------------------EDLL 47 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l--------~s~~~a-----g~~~~---------------------~~~~ 47 (311) +-|.|||| |.+|.-.-+-|+.+- +.+.++ +|+++. |-+|. ...+ T Consensus 6 ~DVvIIGg-Gi~Ga~iArdla~rG-l~v~LvEk~D~a~GTSs~ss~LiHgG~RY~~~d~~~are~l~e~~~l~~~Aphlv 83 (545) T PRK11101 6 TDVIIIGG-GATGAGIARDCALRG-LRCILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCV 83 (545) T ss_pred CCEEEECC-CHHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCHHHC T ss_conf 76899998-689999999998679-9399998997616200120127122523123370999999998999998591640 Q ss_pred CCCCEEEECCCCHH---HHHHHHHHHHCCCCEEEECCCCCHHHHHH Q ss_conf 79989999389837---89999998612584898227630355543 Q gi|254780294|r 48 NAADVSILCLPDVA---SLEIIQLIKKNGINSRIIDTSTAHRIAPG 90 (311) Q Consensus 48 ~~~Divf~a~p~~~---s~~~~~~~~~~g~~~~vid~ss~~R~~~~ 90 (311) +.....|.++|.+. ...+.......|.....+|...+.+++|. T Consensus 84 ~~~g~L~v~~~~~~~~~~~~~~~~~~~~gv~~~~i~~~e~~~~eP~ 129 (545) T PRK11101 84 EPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPA 129 (545) T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCC T ss_conf 3068638971502267899999999976998477689999975868 No 456 >TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity. Probab=42.78 E-value=23 Score=15.31 Aligned_cols=77 Identities=17% Similarity=0.315 Sum_probs=48.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEEC-CCCCCCCC---------CH----HHHCCCCEEEECCCCHHH--- Q ss_conf 07999758867899999998629972--8999965-30078600---------66----774799899993898378--- Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPC-EERHNLRY---------RE----DLLNAADVSILCLPDVAS--- 62 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s-~~~ag~~~---------~~----~~~~~~Divf~a~p~~~s--- 62 (311) .||-|||+ |-.|+++.+.|.++|.. ++.-+-. +...+... ++ ..-.++|-|++|+|.... T Consensus 129 rrvLIIG~-g~~~~~l~~~l~~~~~~G~~vvG~vdd~~~~~~~~~~~pvlg~~~~l~~~i~~~~ideViia~~~~~~~~~ 207 (451) T TIGR03023 129 RRVLIVGA-GELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPLAAEKRI 207 (451) T ss_pred CEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCHHHH T ss_conf 54999968-68999999999719436848999983885444445799736989999999996799889995483556899 Q ss_pred HHHHHHHHHCCCCEEEE Q ss_conf 99999986125848982 Q gi|254780294|r 63 LEIIQLIKKNGINSRII 79 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vi 79 (311) .+....+.+.|..++++ T Consensus 208 ~~li~~~~~~~v~v~~~ 224 (451) T TIGR03023 208 LELLDALEDLTVDVRLV 224 (451) T ss_pred HHHHHHHHHCCCEEEEE T ss_conf 99999986459879994 No 457 >KOG0405 consensus Probab=42.34 E-value=23 Score=15.27 Aligned_cols=12 Identities=33% Similarity=0.011 Sum_probs=6.1 Q ss_pred CEEEEEEEECCC Q ss_conf 769999972221 Q gi|254780294|r 281 PYINIIAVFDNL 292 (311) Q Consensus 281 ~~~~v~s~~DNL 292 (311) +-=.+|+++|-. T Consensus 316 nvp~I~avGDv~ 327 (478) T KOG0405 316 NVPSIWAVGDVT 327 (478) T ss_pred CCCCEEEECCCC T ss_conf 887258730333 No 458 >PRK11914 diacylglycerol kinase; Reviewed Probab=42.28 E-value=23 Score=15.27 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=53.3 Q ss_pred CCEEEEE-------CCCCHHHHHHHHHHHCCCCEEEEEEECCC-CCCCCC-CHHHHCCCCEEEECCCCHHHHHHHHHHHH Q ss_conf 9079997-------58867899999998629972899996530-078600-66774799899993898378999999861 Q gi|254780294|r 1 MYKIFID-------GEHGTTGLKIRSRIVQRKDLCLLSIPCEE-RHNLRY-REDLLNAADVSILCLPDVASLEIIQLIKK 71 (311) Q Consensus 1 M~kVaIv-------GATG~vG~~li~lL~~hp~~~l~~l~s~~-~ag~~~-~~~~~~~~Divf~a~p~~~s~~~~~~~~~ 71 (311) |.||.|+ |...-..+++++.|.+| .+++..+..+. .-...+ ++...+++|.++.+-+++.-.+.+..+.+ T Consensus 6 m~kv~vIvNP~aG~g~~~~~~~~i~~~l~~~-g~~~~~~~t~~~~~a~~la~~a~~~g~d~vv~~GGDGTv~ev~~~l~~ 84 (304) T PRK11914 6 IGKVTVLTNPLSGHGAAPHAAERAIARLHHR-GVDVVEIVGTDAHHARHLVAAALAKGTDALVVVGGDGVISNALQVLAG 84 (304) T ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC T ss_conf 8669999997779985688999999999987-990999932787899999998886499699999562598898764135 Q ss_pred CCCCEEEECCCCC Q ss_conf 2584898227630 Q gi|254780294|r 72 NGINSRIIDTSTA 84 (311) Q Consensus 72 ~g~~~~vid~ss~ 84 (311) .....-+|-..+. T Consensus 85 ~~~plgiiP~GTg 97 (304) T PRK11914 85 TDIPLGIIPAGTG 97 (304) T ss_pred CCCEEEEECCCCH T ss_conf 7860899638872 No 459 >pfam09314 DUF1972 Domain of unknown function (DUF1972). Members of this family of functionally uncharacterized domains are found in bacterial glycosyltransferases and rhamnosyltransferases. Probab=42.23 E-value=23 Score=15.26 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=31.8 Q ss_pred CCEEEEECCCCH----HHHH-HHHHHHCC---CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCC Q ss_conf 907999758867----8999-99998629---97289999653007860066774799899993898 Q gi|254780294|r 1 MYKIFIDGEHGT----TGLK-IRSRIVQR---KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPD 59 (311) Q Consensus 1 M~kVaIvGATG~----vG~~-li~lL~~h---p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~ 59 (311) |.||||+|..|. .|=| +++-|..+ ...++...+++....++ ....+++.+...-.|. T Consensus 1 mkKIaiiGtRGiPa~yGGfEt~ve~L~~~l~~~~~~v~V~c~~~~~~~~--~~~y~gv~~~~i~~~~ 65 (185) T pfam09314 1 MQHVFIIGSRGLPAKYGGFETFVEKLVEHQQSKNIKYHVACLSENSAKS--HFEYKGADCFYIKVPK 65 (185) T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC--CCEECCEEEEEECCCC T ss_conf 9569999588888534729999999998885389569999817988788--8567888999947866 No 460 >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional Probab=42.13 E-value=23 Score=15.25 Aligned_cols=10 Identities=40% Similarity=0.717 Sum_probs=3.7 Q ss_pred CCCCCCCCCC Q ss_conf 3333561000 Q gi|254780294|r 148 GYTGGGKKLI 157 (311) Q Consensus 148 g~sgaG~~~~ 157 (311) |-||+||+.+ T Consensus 356 G~SGsGKSTL 365 (547) T PRK10522 356 GGNGSGKSTL 365 (547) T ss_pred CCCCCCHHHH T ss_conf 9999977999 No 461 >PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed Probab=41.79 E-value=24 Score=15.22 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=25.3 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 79997588678999999986299728999965 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) +|+|||| |.+|.-+-.-|++| -.+++.+.. T Consensus 258 ~VaVIGA-GIAGas~A~~LA~r-G~~VtVlDr 287 (660) T PRK01747 258 DAAIIGG-GIAGAALALALARR-GWQVTLYEA 287 (660) T ss_pred CEEEECC-HHHHHHHHHHHHHC-CCEEEEEEC T ss_conf 1899893-89999999999978-996899947 No 462 >PRK07845 flavoprotein disulfide reductase; Reviewed Probab=41.47 E-value=24 Score=15.19 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=19.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 90799975886789999999862997289999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSI 32 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l 32 (311) |++|.|+|+ |-.|...-..+.+. -.++..+ T Consensus 1 M~dviVIG~-GpaG~~AA~~aa~~-G~kV~lI 30 (467) T PRK07845 1 MTRIVIIGG-GPGGYEAALVAAQL-GADVTVI 30 (467) T ss_pred CCCEEEECC-CHHHHHHHHHHHHC-CCEEEEE T ss_conf 981999874-88999999999978-7959999 No 463 >PRK08762 molybdopterin biosynthesis protein MoeB; Validated Probab=41.44 E-value=24 Score=15.19 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=38.2 Q ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH--HHHCCCC Q ss_conf 7998999938983789999998612584898227630355543--1100210 Q gi|254780294|r 48 NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG--WVYGFPE 97 (311) Q Consensus 48 ~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~--vpl~vPE 97 (311) ++-.+++.|.....|...+..+.+.|+ ..|.+..+-|+-|.+ .|+.=|. T Consensus 57 kd~~ivvyC~sG~RS~~Aa~~L~~~Gy-~~V~~l~GG~~aW~~aGlPvErp~ 107 (379) T PRK08762 57 HDREIVLICQSGKRSAHAAADLRELGY-RRVASVAGGTSAWRDAGLPLERPT 107 (379) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-CCCEECCCCHHHHHHCCCCCCCCC T ss_conf 998599999998799999999997699-660886574999997799855588 No 464 >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc Probab=41.08 E-value=24 Score=15.15 Aligned_cols=22 Identities=18% Similarity=0.498 Sum_probs=19.6 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC Q ss_conf 07999758867899999998629 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR 24 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h 24 (311) .+|+|-|. |-||..+.+.|.+. T Consensus 29 k~VaIqG~-GnVG~~~A~~l~~~ 50 (200) T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEE 50 (200) T ss_pred CEEEEECC-CHHHHHHHHHHHHC T ss_conf 99999898-79999999999967 No 465 >TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre Probab=40.90 E-value=24 Score=15.13 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=46.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCE--EEEEEEC--CCCCCC---C-C------C-HHHHCCCCEEEECCCCHHHHHHH Q ss_conf 07999758867899999998629972--8999965--300786---0-0------6-67747998999938983789999 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDL--CLLSIPC--EERHNL---R-Y------R-EDLLNAADVSILCLPDVASLEII 66 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~--~l~~l~s--~~~ag~---~-~------~-~~~~~~~Divf~a~p~~~s~~~~ 66 (311) .||.|+|+ |-.++++.+.+.++|+. ++..+.+ .+..+. . + . ...-.++|-+++|+|........ T Consensus 125 rrvliiG~-~~~a~~l~~~l~~~~~~g~~v~G~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~ideV~ial~~~~~~~~~ 203 (442) T TIGR03013 125 RRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDERRGSLPV 203 (442) T ss_pred EEEEEEEC-CHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCHHCCCHH T ss_conf 06999977-19999999998619779818999996798633467666578778999999968999999967821105089 Q ss_pred HH---HHHCCCCEEEECCCCCH Q ss_conf 99---86125848982276303 Q gi|254780294|r 67 QL---IKKNGINSRIIDTSTAH 85 (311) Q Consensus 67 ~~---~~~~g~~~~vid~ss~~ 85 (311) .. +...| +.+.+....+ T Consensus 204 ~~l~~~~~~~--v~v~~~p~~~ 223 (442) T TIGR03013 204 DELLECKLSG--IEVVDAPSFF 223 (442) T ss_pred HHHHHHHHCC--EEEEECCCHH T ss_conf 9999878679--0999934267 No 466 >PRK12862 malic enzyme; Reviewed Probab=40.84 E-value=24 Score=15.13 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=48.7 Q ss_pred CEEEEECCCCHHHHHHHHHHHCC--CCEEEEEEECCCC--CCCC-----CC------------HHHHCCCCEEEE-CCCC Q ss_conf 07999758867899999998629--9728999965300--7860-----06------------677479989999-3898 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQR--KDLCLLSIPCEER--HNLR-----YR------------EDLLNAADVSIL-CLPD 59 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~h--p~~~l~~l~s~~~--ag~~-----~~------------~~~~~~~Divf~-a~p~ 59 (311) .||.|.|| |..|....++|..- +.-++....|+.- .|.+ ++ ++.+.+.|+.+- +.|+ T Consensus 193 ~kiv~~Ga-Gaa~~a~~~ll~~~G~~~~ni~~~D~~Gvi~~~r~~~~~~~k~~~a~~t~~~~l~ea~~gADvfig~S~~~ 271 (761) T PRK12862 193 VKLVASGA-GAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQKTDARTLAEVIEGADVFLGLSAAG 271 (761) T ss_pred EEEEEECC-CHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCCEEEECCCCC T ss_conf 18999788-78899999999983998101799946787778877430799999965079665999966898899806899 Q ss_pred HHHHHHHHHHHHC Q ss_conf 3789999998612 Q gi|254780294|r 60 VASLEIIQLIKKN 72 (311) Q Consensus 60 ~~s~~~~~~~~~~ 72 (311) -++.+++..-.+. T Consensus 272 ~~~~e~v~~Ma~~ 284 (761) T PRK12862 272 VLKPEMVKKMAPR 284 (761) T ss_pred CCCHHHHHHHCCC T ss_conf 9999999852737 No 467 >KOG2304 consensus Probab=40.82 E-value=23 Score=15.24 Aligned_cols=36 Identities=19% Similarity=0.255 Sum_probs=26.7 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCC Q ss_conf 90799975886789999999862997289999653007 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH 38 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~a 38 (311) |.+|+|+|| |+-|.-+-++-... -+++.++.+++++ T Consensus 11 ~~~V~ivGa-G~MGSGIAQv~a~s-g~~V~l~d~~~~a 46 (298) T KOG2304 11 IKNVAIVGA-GQMGSGIAQVAATS-GLNVWLVDANEDA 46 (298) T ss_pred CCCEEEECC-CCCCHHHHHHHHHC-CCCEEEECCCHHH T ss_conf 662478756-64320399998851-9946985477789 No 468 >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed Probab=40.62 E-value=25 Score=15.11 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=24.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEEC Q ss_conf 79997588678999999986299728999965 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPC 34 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s 34 (311) .|+|||| |.||..+--.|.++ .+.+..+-. T Consensus 7 DV~IvG~-G~vGl~lAl~La~~-G~~V~viE~ 36 (391) T PRK08020 7 EIAIVGG-GMVGGALALGLAQH-GFSVAVIEH 36 (391) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEEEEEC T ss_conf 4899993-69999999999866-997899948 No 469 >KOG3923 consensus Probab=40.52 E-value=25 Score=15.10 Aligned_cols=64 Identities=17% Similarity=0.034 Sum_probs=32.8 Q ss_pred CCEEEEECCCCHHHHHHHHHHHC------CCCEEEEEEECCCCCCCCCCHH--HHCCCCEEEECCCCHHHHHHHH Q ss_conf 90799975886789999999862------9972899996530078600667--7479989999389837899999 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQ------RKDLCLLSIPCEERHNLRYRED--LLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~------hp~~~l~~l~s~~~ag~~~~~~--~~~~~Divf~a~p~~~s~~~~~ 67 (311) |.||||||| |-+|..---.|.+ -|..+++.++-+.- -++.++. -+-..|.-+ -.|.+..++|-. T Consensus 3 ~~~iaViGa-GVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~-e~T~s~~~AGl~~p~~~~-~~~~~~~~~w~k 74 (342) T KOG3923 3 TPRIAVIGA-GVIGLSTALCILELYHSVLIPVAKVTVISDRFT-EDTTSDVAAGLFRPDLSD-GTPQEINRQWGK 74 (342) T ss_pred CCCEEEECC-CCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC-CCCCCCCCCCEEECCCCC-CCCHHHHHHHHH T ss_conf 760899747-710156899999865412688622787457786-555554346421114678-970788999879 No 470 >PRK10651 transcriptional regulator NarL; Provisional Probab=40.41 E-value=25 Score=15.09 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=49.9 Q ss_pred CEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEEC--CCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 0799975886789999999862997289999653007860066774799899993--89837899999986125848982 Q gi|254780294|r 2 YKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILC--LPDVASLEIIQLIKKNGINSRII 79 (311) Q Consensus 2 ~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a--~p~~~s~~~~~~~~~~g~~~~vi 79 (311) +||.||----.+-.-|..+|+.+|.+++...+++....... ..-...|++++- +|+.-.-+.+..+.+.+..++|+ T Consensus 7 irVlIvDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~ea~~~--~~~~~pDlvllDl~lp~~~G~~~~~~l~~~~~~~~ii 84 (216) T PRK10651 7 ATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIEL--AESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIV 84 (216) T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCHHHHHHH--HHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 78999839999999999999758993899998999999999--8707999999959999988876423233457887467 Q ss_pred CCC Q ss_conf 276 Q gi|254780294|r 80 DTS 82 (311) Q Consensus 80 d~s 82 (311) =.| T Consensus 85 vlt 87 (216) T PRK10651 85 VFS 87 (216) T ss_pred EEE T ss_conf 630 No 471 >COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair] Probab=40.25 E-value=25 Score=15.07 Aligned_cols=110 Identities=20% Similarity=0.144 Sum_probs=61.1 Q ss_pred EEEEEC---CCCHHHHHHHHHHHCCCCEEEEEEECCC---CCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE Q ss_conf 799975---8867899999998629972899996530---0786006677479989999389837899999986125848 Q gi|254780294|r 3 KIFIDG---EHGTTGLKIRSRIVQRKDLCLLSIPCEE---RHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS 76 (311) Q Consensus 3 kVaIvG---ATG~vG~~li~lL~~hp~~~l~~l~s~~---~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~ 76 (311) ||.|+| |=|++...++....++=.++.....-.+ .-| .+......++|+++++==..-+.+-...+.+.|.++ T Consensus 38 ~I~I~~d~DaDGitS~ail~~~L~~~g~~~~~~ip~~~~~~~g-~~~~~~~~~~~liItvD~G~~~~~~i~~~~~~g~~v 116 (491) T COG0608 38 KILIYGDYDADGITSAAILAKALRRLGADVDYYIPNRFEEGYG-AIRKLKEEGADLIITVDNGSGSLEEIARAKELGIDV 116 (491) T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCH-HHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCE T ss_conf 6999787885177899999999997698268974774455530-676556508988999779973799999987369978 Q ss_pred EEECCCCCHHHHHHHHHCCCCCCHHHHHHCCCCEEEECCC Q ss_conf 9822763035554311002100047765204960772584 Q gi|254780294|r 77 RIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116 (311) Q Consensus 77 ~vid~ss~~R~~~~vpl~vPEvN~~~~~~~~~~~iIanPn 116 (311) .|+|....-..-|+ .+--+||.....-......+..| T Consensus 117 IVtDHH~~~~~~p~---~~~ivNP~~~~~~~~~~~lag~g 153 (491) T COG0608 117 IVTDHHPPGEELPD---AVAIVNPNLPGCDYPFKELAGVG 153 (491) T ss_pred EEECCCCCCCCCCC---CCEEECCCCCCCCCCCCCEEHHH T ss_conf 99789999776886---52685888788787610010569 No 472 >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional Probab=40.08 E-value=25 Score=15.06 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=15.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEE Q ss_conf 799975886789999999862997289999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI 32 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l 32 (311) -|.|+|+ |-.|..--..+.+. -.++..+ T Consensus 8 DviVIGa-GpaG~~aA~~aa~~-G~kV~vi 35 (465) T PRK05249 8 DAVVIGS-GPAGEGAAMQAAKL-GKRVAVI 35 (465) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEEEE T ss_conf 9899997-78999999999978-9929999 No 473 >cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however. Probab=40.03 E-value=25 Score=15.05 Aligned_cols=53 Identities=8% Similarity=0.080 Sum_probs=31.4 Q ss_pred CEEEEEEECCCCCCCC--CCHHH--HCCCCEEEECCCCHHHHHHHHHHHHCCCCEEEEC Q ss_conf 7289999653007860--06677--4799899993898378999999861258489822 Q gi|254780294|r 26 DLCLLSIPCEERHNLR--YREDL--LNAADVSILCLPDVASLEIIQLIKKNGINSRIID 80 (311) Q Consensus 26 ~~~l~~l~s~~~ag~~--~~~~~--~~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid 80 (311) .+|+..........+. .-... -.++++++-...++.+....+.+.+.| +.+|. T Consensus 41 ~ielv~~D~~~~p~~a~~~a~~li~~d~V~aiiG~~~S~~~~a~~~~~~~~~--vp~i~ 97 (336) T cd06326 41 KIELVTLDDGYEPERTVANTRKLIEDDKVFALFGYVGTPTTAAALPLLEEAG--VPLVG 97 (336) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHC--CEEEE T ss_conf 9899996599998999999999985289569988889878999999999837--62783 No 474 >PRK06857 consensus Probab=39.43 E-value=26 Score=14.99 Aligned_cols=110 Identities=13% Similarity=0.101 Sum_probs=58.9 Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H Q ss_conf 99999986299728999965300786006677479989999389837899999986125848-----98227630355-5 Q gi|254780294|r 15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A 88 (311) Q Consensus 15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~ 88 (311) .++++.|.+++.+-+....+.+.+-.-.+--.-.++.++=..+-...+.+....+.+...+. .|.|...+.+. + T Consensus 3 ~~ii~~l~~~~iipVir~~~~~~a~~~~~al~~gGi~~iEiTlrt~~a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~ 82 (209) T PRK06857 3 EQIIEKLRALKVVPVIAIDDAEDILPLAKVLAENGLPVAEITFRSAAAAEAIRLLREAYPDMLIGAGTVLTPEQVDAAKE 82 (209) T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHH T ss_conf 99999999799799997599999999999999879988999589932999999999758994899993767999999998 Q ss_pred HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 431-100210004776520496077258421133112 Q gi|254780294|r 89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) .+. -++-|-.+++..+.....++..-|||+|.+=++ T Consensus 83 aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~ 119 (209) T PRK06857 83 AGADFIVSPGFNPNTVKYCQQLNIPIVPGVNNPSLVE 119 (209) T ss_pred CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH T ss_conf 3999999089999999999974996547879999999 No 475 >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype.. Probab=39.32 E-value=19 Score=15.87 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=22.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCCC----CEEEEEE Q ss_conf 79997588678999999986299----7289999 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRK----DLCLLSI 32 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp----~~~l~~l 32 (311) +|.|||+ |+||..|===|..+- ...+..+ T Consensus 1 D~iIvGG-Gl~G~~lAlAL~~~~G~~~~~~i~l~ 33 (425) T TIGR01984 1 DVIIVGG-GLVGLSLALALSRLSGREGKLKIALI 33 (425) T ss_pred CEEEECC-HHHHHHHHHHHHHCCCCCCCCEEEEE T ss_conf 9788856-58999999998506775576158986 No 476 >PRK13748 putative mercuric reductase; Provisional Probab=39.31 E-value=26 Score=14.98 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=12.3 Q ss_pred CCCEEEEC-CCCHHHHHHHHHHHHCCCCEEEECC Q ss_conf 99899993-8983789999998612584898227 Q gi|254780294|r 49 AADVSILC-LPDVASLEIIQLIKKNGINSRIIDT 81 (311) Q Consensus 49 ~~Divf~a-~p~~~s~~~~~~~~~~g~~~~vid~ 81 (311) .+|+++.- -|.+.+.. -++.+.|..+.+|+. T Consensus 98 ~yDliVIG~GpaG~~AA--~~Aa~~G~kValVE~ 129 (561) T PRK13748 98 PLHVAVIGSGGAAMAAA--LKAVEQGARVTLIER 129 (561) T ss_pred CCCEEEECCCHHHHHHH--HHHHHCCCEEEEEEC T ss_conf 87689989588999999--999978997999947 No 477 >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL; InterPro: IPR012701 Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three-component ABC transporter, where IPR005769 from INTERPRO is the permease, IPR005770 from INTERPRO is the phosphonates binding protein, and IPR012693 from INTERPRO is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lyase complex. This protein (PhnL) and the adjacent-encoded PhnK (IPR012700 from INTERPRO) resemble transporter ATP-binding proteins but are suggested, based on mutagenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se .. Probab=39.18 E-value=12 Score=17.05 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=26.7 Q ss_pred EEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH Q ss_conf 76512333356100000013444322343322222344444342013 Q gi|254780294|r 143 INAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEIT 189 (311) Q Consensus 143 ~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~ 189 (311) +.+.+|-|||||+.+-. ..+.|+.+.......+|..++- T Consensus 36 cv~L~G~SGaGKSTlLk--------~lYaNYlp~~G~i~~~H~G~~~ 74 (224) T TIGR02324 36 CVALSGPSGAGKSTLLK--------SLYANYLPDSGRILVRHEGAWV 74 (224) T ss_pred EEEEECCCCCCHHHHHH--------HHHHCCCCCCCEEEEEECCHHH T ss_conf 58853688876789999--------7663047468677776240476 No 478 >PRK08887 nicotinic acid mononucleotide adenylyltransferase; Provisional Probab=39.13 E-value=15 Score=16.36 Aligned_cols=10 Identities=40% Similarity=0.391 Sum_probs=9.2 Q ss_pred CCEEEEECCC Q ss_conf 9079997588 Q gi|254780294|r 1 MYKIFIDGEH 10 (311) Q Consensus 1 M~kVaIvGAT 10 (311) |.||||.|.| T Consensus 1 MkkIgifGGS 10 (173) T PRK08887 1 MKKIAVFGSA 10 (173) T ss_pred CCEEEEEEEC T ss_conf 9489997428 No 479 >cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. Probab=39.05 E-value=26 Score=14.96 Aligned_cols=91 Identities=10% Similarity=0.068 Sum_probs=54.7 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCC------------CCCCCC-----------------------HHH Q ss_conf 7999758867899999998629-9728999965300------------786006-----------------------677 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEER------------HNLRYR-----------------------EDL 46 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~------------ag~~~~-----------------------~~~ 46 (311) ||.|+|-=|.-+..+-++...- ...++..+-.... .|+++. ... T Consensus 2 kI~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~pe~G~~aA~e~~~~I~~~ 81 (303) T cd02191 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPELGAEAAEEVQEAIDNI 81 (303) T ss_pred CEEEEEECCCHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 18999878813999999998299971799995769998359998289727666688989889458999999999999998 Q ss_pred HCCCCEEEEC------CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHC Q ss_conf 4799899993------89837899999986125848982276303555431100 Q gi|254780294|r 47 LNAADVSILC------LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYG 94 (311) Q Consensus 47 ~~~~Divf~a------~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~~vpl~ 94 (311) +++.|++|.+ ++.+.+.-.+..+.+.|.- +|-=-+-.|+++...-.. T Consensus 82 l~~~d~vfi~AGmGGGTGtGaaPviA~~Ake~g~l-tvavVt~PF~~EG~~r~~ 134 (303) T cd02191 82 PVHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGTL-TVAVVTLPFSDEGGIRML 134 (303) T ss_pred HCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHH T ss_conf 65699899998418970042899999999975993-899997872551199999 No 480 >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated Probab=38.94 E-value=26 Score=14.95 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=23.9 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEE Q ss_conf 7999758867899999998629972899996 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIP 33 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~ 33 (311) .|+|||| |-+|..|=.+|..+ -++...+- T Consensus 4 ~V~IVGa-GP~GL~LA~lLar~-GI~~vVlE 32 (392) T PRK08243 4 QVAIIGA-GPAGLLLGQLLHLA-GIDSVVLE 32 (392) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEEEEE T ss_conf 8999997-79999999999977-99889997 No 481 >PRK07846 mycothione/glutathione reductase; Reviewed Probab=38.83 E-value=26 Score=14.94 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHCCCCEEEECCCC Q ss_conf 78999999861258489822763 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTST 83 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss 83 (311) +..|++..+...|.++.+++.+. T Consensus 179 ig~E~A~~~~~lG~~Vtli~~~~ 201 (453) T PRK07846 179 IAAEFAHVFSALGVRVTVVNRSD 201 (453) T ss_pred HHHHHHHHHHHHCCEEEEEEECC T ss_conf 79999999995299268997465 No 482 >PRK13947 shikimate kinase; Provisional Probab=38.67 E-value=26 Score=14.92 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=26.2 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC Q ss_conf 907999758867899999998629---9728999965300786006 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR 43 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~ 43 (311) |.||.++|-.|-.=..+=+.|+++ |.+++-.+= ++..|+++. T Consensus 1 mknI~LiG~mGsGKTtiGk~La~~L~~~fiD~D~~I-e~~~g~sI~ 45 (171) T PRK13947 1 MKNIVLIGFMGTGKTTVGKKVATTLSFGFIDTDKEI-EKMAGMTVS 45 (171) T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHCCCEEECHHHH-HHHCCCCHH T ss_conf 985899799999889999999999796989874999-988299889 No 483 >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] Probab=38.65 E-value=26 Score=14.92 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=27.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECCCCCC Q ss_conf 907999758867899999998629-972899996530078 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCEERHN 39 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~~~ag 39 (311) +++|+|||| |.-|.-+...|.+. +.. +..|-.++..| T Consensus 8 ~~~v~IIGa-G~sGlaaa~~L~~~g~~~-~~i~Ek~~~~G 45 (443) T COG2072 8 HTDVAIIGA-GQSGLAAAYALKQAGVPD-FVIFEKRDDVG 45 (443) T ss_pred CCCEEEECC-CHHHHHHHHHHHHCCCCC-EEEEEECCCCC T ss_conf 554899898-788999999999759986-79997057667 No 484 >cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th Probab=38.64 E-value=26 Score=14.92 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=32.3 Q ss_pred CEEEEEEECCCCCC--CCCCHHHH--CCCCEEEECCCCHHHHHHHHHHHHCCCCEEEECCC Q ss_conf 72899996530078--60066774--79989999389837899999986125848982276 Q gi|254780294|r 26 DLCLLSIPCEERHN--LRYREDLL--NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTS 82 (311) Q Consensus 26 ~~~l~~l~s~~~ag--~~~~~~~~--~~~Divf~a~p~~~s~~~~~~~~~~g~~~~vid~s 82 (311) .+++....+..... .+.-.+.. .++++++-....+.+....+.+.+.+. .+|..+ T Consensus 40 ~iel~~~D~~~~~~~a~~~~~~l~~~~~v~~iiG~~~s~~~~a~~~~~~~~~v--p~i~~~ 98 (299) T cd04509 40 KLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEALKI--PLISPG 98 (299) T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCC--CEECCC T ss_conf 88999967999989999999998611694699778874889999999998289--422267 No 485 >PRK01395 V-type ATP synthase subunit F; Provisional Probab=38.37 E-value=16 Score=16.35 Aligned_cols=30 Identities=10% Similarity=0.113 Sum_probs=14.0 Q ss_pred CCCEEEECCCCHHHHHHHHHHHHCCCCEEEE Q ss_conf 9989999389837899999986125848982 Q gi|254780294|r 49 AADVSILCLPDVASLEIIQLIKKNGINSRII 79 (311) Q Consensus 49 ~~Divf~a~p~~~s~~~~~~~~~~g~~~~vi 79 (311) ++|+ |-+...+.+++...++.+.++.+.+| T Consensus 22 G~dv-fpv~~~eEa~~~l~~La~~~y~II~I 51 (104) T PRK01395 22 GFDV-FPVIEEQEARNTLRKLAMEDYAIIYI 51 (104) T ss_pred CEEE-EECCCHHHHHHHHHHHHHCCEEEEEE T ss_conf 8047-85488799999999998679279997 No 486 >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional Probab=38.33 E-value=27 Score=14.89 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=25.5 Q ss_pred EEEEECCCCHHHHHHHHHHHCC-CCEEEEEEECC Q ss_conf 7999758867899999998629-97289999653 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQR-KDLCLLSIPCE 35 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~h-p~~~l~~l~s~ 35 (311) -|.|||| |.||..+--.|.++ +.+.+..+... T Consensus 3 DV~IVGa-GpvGl~lAl~L~~~G~~~~v~vie~~ 35 (403) T PRK07333 3 DVVIAGG-GYVGLALAVALKQAAPHLPVIVVDAA 35 (403) T ss_pred EEEEECC-CHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 3999994-69999999999846999669998288 No 487 >PRK06714 S-adenosylhomocysteine nucleosidase; Validated Probab=38.31 E-value=16 Score=16.29 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=13.5 Q ss_pred CCEEEEECCCCHHHHHHHHHHHC Q ss_conf 90799975886789999999862 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQ 23 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~ 23 (311) |.||||+||=--==..|.+.|.+ T Consensus 1 M~kIgIIgAM~~Ev~~l~~~~~~ 23 (236) T PRK06714 1 MKRIAIVAAWEPELTYLHQSYPS 23 (236) T ss_pred CCEEEEEECCHHHHHHHHHHHCC T ss_conf 96699995289999999997300 No 488 >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional Probab=38.31 E-value=27 Score=14.88 Aligned_cols=35 Identities=17% Similarity=0.192 Sum_probs=21.6 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 7999758867899999998629972899996530078 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN 39 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag 39 (311) ||||||| |=.|..--.-|... -.+++.+-+-...| T Consensus 434 KVAVIGs-GPAGLs~A~~Lar~-G~~VTVfEal~~~G 468 (993) T PRK12775 434 KVAIVGS-GPAGLAAAADLTRY-GVETTVYEALHVLG 468 (993) T ss_pred CEEEECC-CHHHHHHHHHHHHC-CCCEEEEECCCCCC T ss_conf 0899783-78899999999977-99648971688899 No 489 >PTZ00293 thymidine kinase; Provisional Probab=38.27 E-value=27 Score=14.88 Aligned_cols=47 Identities=15% Similarity=0.103 Sum_probs=29.0 Q ss_pred HHCCCCEE------EECCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH--HHHHCCC Q ss_conf 74799899------993898378999999861258489822763035554--3110021 Q gi|254780294|r 46 LLNAADVS------ILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAP--GWVYGFP 96 (311) Q Consensus 46 ~~~~~Div------f~a~p~~~s~~~~~~~~~~g~~~~vid~ss~~R~~~--~vpl~vP 96 (311) .+.++|++ || |+ -.+|+..+++.|..+.|--+.++||..| .++-.+| T Consensus 74 ~~~~~DVIgIDEaQFF--~D--Lvdf~e~lAn~GK~VIVAGLDGDFkRkPFG~IldLIP 128 (284) T PTZ00293 74 TWKRFDVLAIDEGQFF--SD--LVDFCNTAADAGKVVMVSALDGDYRRKPFGQICELVP 128 (284) T ss_pred HHHCCCEEEEECHHCC--CC--HHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHH T ss_conf 7535888999703416--23--8999999986899899994587633266623877742 No 490 >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional Probab=37.95 E-value=27 Score=14.85 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=10.9 Q ss_pred HHHHHHHHHHHCCCCEEEECCCCC Q ss_conf 789999998612584898227630 Q gi|254780294|r 61 ASLEIIQLIKKNGINSRIIDTSTA 84 (311) Q Consensus 61 ~s~~~~~~~~~~g~~~~vid~ss~ 84 (311) ++-+++..+...|.++.+++.+.. T Consensus 168 ig~E~A~~~~~lG~~Vtli~~~~~ 191 (438) T PRK07251 168 IGLEFAGLYNKLGSKVTVLDAAST 191 (438) T ss_pred HHHHHHHHHHHCCCEEEEEEECCC T ss_conf 588999999834876899984610 No 491 >TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction. Probab=37.72 E-value=11 Score=17.28 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=8.2 Q ss_pred CCCCCCHHHHHHHHHHH Q ss_conf 57754489988665422 Q gi|254780294|r 222 LSWKTNSEELHSIFQEY 238 (311) Q Consensus 222 ~~~~~~~~~~~~~~~~~ 238 (311) ...+-..+++.+.|.+. T Consensus 229 ee~~p~~~~~~~~y~~~ 245 (275) T TIGR01281 229 EESGPELEEVTAEYLKM 245 (275) T ss_pred CCCCCCHHHHHHHHHHH T ss_conf 58996588999999999 No 492 >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Probab=37.69 E-value=27 Score=14.82 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=60.8 Q ss_pred HHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCE-----EEECCCCCHHH-H Q ss_conf 99999986299728999965300786006677479989999389837899999986125848-----98227630355-5 Q gi|254780294|r 15 LKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNGINS-----RIIDTSTAHRI-A 88 (311) Q Consensus 15 ~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g~~~-----~vid~ss~~R~-~ 88 (311) .++.++|.++|.+-+....+.+.+-.-.+.-.-.++.++=..+-...+.+....+.+...+. .|.|.....+. + T Consensus 6 ~~i~~ll~~~~ii~Vlr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~e~~~~a~~ 85 (212) T PRK05718 6 TQIEEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEVPEALIGAGTVLNPEQLAQAIE 85 (212) T ss_pred HHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHH T ss_conf 36999997698799997489999999999999879978999578961999999999758981796533134889999998 Q ss_pred HHH-HHCCCCCCHHHHHHCCCCEEEECCCCCCCCCHH Q ss_conf 431-100210004776520496077258421133112 Q gi|254780294|r 89 PGW-VYGFPEMDKSQKEKIRSARYITNPGCYATGAIA 124 (311) Q Consensus 89 ~~v-pl~vPEvN~~~~~~~~~~~iIanPnC~~t~~~l 124 (311) .+. -++-|-.+++..+.....++..-|||+|.+=++ T Consensus 86 aGA~FiVSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~ 122 (212) T PRK05718 86 AGAQFIVSPGLTPPLLKACQDGPIPLIPGVNTPSELM 122 (212) T ss_pred CCCCEEECCCCCHHHHHHHHHCCCCEECCCCCHHHHH T ss_conf 4998998489989999999981997657869999999 No 493 >cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Probab=37.38 E-value=28 Score=14.79 Aligned_cols=85 Identities=13% Similarity=-0.006 Sum_probs=0.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC-------CCEEEEEEECCCCCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCC Q ss_conf 907999758867899999998629-------9728999965300786006677479989999389837899999986125 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR-------KDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVASLEIIQLIKKNG 73 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h-------p~~~l~~l~s~~~ag~~~~~~~~~~~Divf~a~p~~~s~~~~~~~~~~g 73 (311) ..||||+....--|+.+.+.+.+. ...+..+-.+...-.-.+....-.+.|++|++.....+..+...+.+.| T Consensus 144 ~k~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Df~~~~~~i~~~~pd~v~~~~~~~~~~~~~~q~~~~G 223 (362) T cd06343 144 NAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKLKAAGADVVVLATTPKFAAQAIRKAAELG 223 (362) T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC T ss_conf 87389964785777999999999999769968899945777788899999998549399999478468999999999769 Q ss_pred CCEEEECCCCCH Q ss_conf 848982276303 Q gi|254780294|r 74 INSRIIDTSTAH 85 (311) Q Consensus 74 ~~~~vid~ss~~ 85 (311) +....+-.+..+ T Consensus 224 ~~~~~~~~~~~~ 235 (362) T cd06343 224 WKPTFLLSSVSA 235 (362) T ss_pred CCCCEEEEECCC T ss_conf 998679873466 No 494 >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] Probab=37.11 E-value=28 Score=14.77 Aligned_cols=37 Identities=22% Similarity=0.276 Sum_probs=0.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC Q ss_conf 907999758867899999998629972899996530078 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN 39 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag 39 (311) |+++-|||| |+-|..+-++++++ .-.+..+--+++.| T Consensus 1 ~fd~lIVGa-GlsG~V~A~~a~~~-gk~VLIvekR~HIG 37 (374) T COG0562 1 MFDYLIVGA-GLSGAVIAEVAAQL-GKRVLIVEKRNHIG 37 (374) T ss_pred CCCEEEECC-CHHHHHHHHHHHHC-CCEEEEEECCCCCC T ss_conf 975899877-62688999999975-98799996256678 No 495 >PRK07024 short chain dehydrogenase; Provisional Probab=36.57 E-value=29 Score=14.71 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=0.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCH----------------------------HHHCCCCE Q ss_conf 90799975886789999999862997289999653007860066----------------------------77479989 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYRE----------------------------DLLNAADV 52 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~----------------------------~~~~~~Di 52 (311) ..||-|.|||.=.|+++-+.|.++ -.++...+-+...-+++.+ +.+..+|+ T Consensus 2 ~~~VlITGassGIG~a~A~~la~~-G~~v~l~~R~~~~L~~~~~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~iDi 80 (256) T PRK07024 2 PLKVFITGASSGIGQALAREYARQ-GATLGLVARRTDALQAFAARLPKARVSVYAADVRDADALAAAAADFIAAHGCPDV 80 (256) T ss_pred CCEEEEECCCHHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCE T ss_conf 998999846029999999999988-9989999898899999999767997699981179999999999999998399879 Q ss_pred EEECCC Q ss_conf 999389 Q gi|254780294|r 53 SILCLP 58 (311) Q Consensus 53 vf~a~p 58 (311) ++.+++ T Consensus 81 linNAG 86 (256) T PRK07024 81 VIANAG 86 (256) T ss_pred EEECCC T ss_conf 998885 No 496 >COG2130 Putative NADP-dependent oxidoreductases [General function prediction only] Probab=36.40 E-value=29 Score=14.70 Aligned_cols=80 Identities=10% Similarity=0.076 Sum_probs=0.0 Q ss_pred EEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC---------------------CCCCHHHHCCCCEEEECCCCHHH Q ss_conf 999758867899999998629972899996530078---------------------60066774799899993898378 Q gi|254780294|r 4 IFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN---------------------LRYREDLLNAADVSILCLPDVAS 62 (311) Q Consensus 4 VaIvGATG~vG~~li~lL~~hp~~~l~~l~s~~~ag---------------------~~~~~~~~~~~Divf~a~p~~~s 62 (311) |-|-+|+|.||....+|-- .+--.+.-+++...+- +.+.+...+++|+-|=+.+.++. T Consensus 154 vvVSaAaGaVGsvvgQiAK-lkG~rVVGiaGg~eK~~~l~~~lGfD~~idyk~~d~~~~L~~a~P~GIDvyfeNVGg~v~ 232 (340) T COG2130 154 VVVSAAAGAVGSVVGQIAK-LKGCRVVGIAGGAEKCDFLTEELGFDAGIDYKAEDFAQALKEACPKGIDVYFENVGGEVL 232 (340) T ss_pred EEEEECCCCCCHHHHHHHH-HHCCEEEEECCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCCCHHH T ss_conf 9997346653068899988-607759996588899899987038713554476569999998789871799974896589 Q ss_pred HHHHHHHHHCCCCEEEECCCCCH Q ss_conf 99999986125848982276303 Q gi|254780294|r 63 LEIIQLIKKNGINSRIIDTSTAH 85 (311) Q Consensus 63 ~~~~~~~~~~g~~~~vid~ss~~ 85 (311) -...+.+...+ +..++-.-|.| T Consensus 233 DAv~~~ln~~a-Ri~~CG~IS~Y 254 (340) T COG2130 233 DAVLPLLNLFA-RIPVCGAISQY 254 (340) T ss_pred HHHHHHHCCCC-CEEEEEEHHHC T ss_conf 99998623045-22461002533 No 497 >PRK12824 acetoacetyl-CoA reductase; Provisional Probab=36.38 E-value=29 Score=14.70 Aligned_cols=101 Identities=13% Similarity=0.122 Sum_probs=0.0 Q ss_pred CCEEEEE-CCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHCCC Q ss_conf 9079997-588678999999986299728999965300786006677479989999-----3898378999999861258 Q gi|254780294|r 1 MYKIFID-GEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSIL-----CLPDVASLEIIQLIKKNGI 74 (311) Q Consensus 1 M~kVaIv-GATG~vG~~li~lL~~hp~~~l~~l~s~~~ag~~~~~~~~~~~Divf~-----a~p~~~s~~~~~~~~~~g~ 74 (311) |.||++| ||++=.|.++-+.|.+.-+.=+..--+.+...++..+..-..-+-+++ +-+.++..-+.....+.|. T Consensus 1 M~KvalITGas~GIG~a~a~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~v~~~~~~~g~ 80 (245) T PRK12824 1 MKKIALVTGAKRGIGSAIARELLADGYRVIATYFGNYDAAKDWFEEYGFTEDQVRLKSLDVTDTEECQEALARIEEEEGP 80 (245) T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCC T ss_conf 98599994788889999999999879989999588077899999987404993899991389999999999999997499 Q ss_pred CEEEECCCCCHHHHHHHHHCCCCCCHHHHHHC Q ss_conf 48982276303555431100210004776520 Q gi|254780294|r 75 NSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKI 106 (311) Q Consensus 75 ~~~vid~ss~~R~~~~vpl~vPEvN~~~~~~~ 106 (311) --.+|.|++..+..+ +.|+..+..+.. T Consensus 81 iDiLVnnAG~~~~~~-----~~~~~~e~w~~~ 107 (245) T PRK12824 81 VDILVNNAGITRDSG-----FKRMSHQEWNDV 107 (245) T ss_pred CCEEEECCCCCCCCC-----CHHCCHHHHHHH T ss_conf 989998988899999-----023999999999 No 498 >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional Probab=36.35 E-value=29 Score=14.69 Aligned_cols=21 Identities=14% Similarity=0.195 Sum_probs=0.0 Q ss_pred EEEEECCCCHHHHHHHHHHHC Q ss_conf 799975886789999999862 Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQ 23 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~ 23 (311) +|||||.||-.=..|+++|.. T Consensus 363 ~vaiVG~SGsGKSTL~~LL~g 383 (585) T PRK13657 363 TVAIVGPTGAGKSTLINLLHR 383 (585) T ss_pred EEEEECCCCCCHHHHHHHHHH T ss_conf 899988989869999999860 No 499 >cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Probab=36.29 E-value=29 Score=14.69 Aligned_cols=84 Identities=14% Similarity=0.021 Sum_probs=0.0 Q ss_pred CCEEEEECCCCHHHHHHHHHHHCC---CCEEEEEEECCCCCCCCCC----HHHHCCCCEEEECCCCHHHHHHHHHHHHCC Q ss_conf 907999758867899999998629---9728999965300786006----677479989999389837899999986125 Q gi|254780294|r 1 MYKIFIDGEHGTTGLKIRSRIVQR---KDLCLLSIPCEERHNLRYR----EDLLNAADVSILCLPDVASLEIIQLIKKNG 73 (311) Q Consensus 1 M~kVaIvGATG~vG~~li~lL~~h---p~~~l~~l~s~~~ag~~~~----~~~~~~~Divf~a~p~~~s~~~~~~~~~~g 73 (311) ..||+++....--|+..++.+.+. --+++..-..-......++ ...-.+.|++|+......+..++..+++.| T Consensus 140 ~kkva~v~~d~~~G~~~~~~~~~~~~~~G~~vv~~~~~~~~~~Dft~~l~~i~~a~pD~V~~~~~~~~~~~~~kqa~~~G 219 (351) T cd06334 140 GKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLEPVPPPGPNDQKAQWLQIRRSGPDYVILWGWGVMNPVAIKEAKRVG 219 (351) T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCC T ss_conf 87899995686276899999999999769979888806999835899999999769899999377378999999999759 Q ss_pred CCEEEECCCCC Q ss_conf 84898227630 Q gi|254780294|r 74 INSRIIDTSTA 84 (311) Q Consensus 74 ~~~~vid~ss~ 84 (311) +...++-.+.. T Consensus 220 ~~~~~ig~~~~ 230 (351) T cd06334 220 LDDKFIGNWWS 230 (351) T ss_pred CCCCEEEEECC T ss_conf 99857975167 No 500 >KOG2015 consensus Probab=36.26 E-value=29 Score=14.68 Aligned_cols=64 Identities=17% Similarity=0.113 Sum_probs=0.0 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEE---------------EEECCCCCCC--------------------------- Q ss_conf 7999758867899999998629972899---------------9965300786--------------------------- Q gi|254780294|r 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLL---------------SIPCEERHNL--------------------------- 40 (311) Q Consensus 3 kVaIvGATG~vG~~li~lL~~hp~~~l~---------------~l~s~~~ag~--------------------------- 40 (311) ||-|+|| |=.|-|+++-|+-.-..+++ ++..++..|+ T Consensus 42 kiLviGA-GGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~v~~h~~kIq 120 (422) T KOG2015 42 KILVIGA-GGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCVVVPHRQKIQ 120 (422) T ss_pred CEEEECC-CCCCHHHHHHHHHHCCCEEEEEEECCEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCHH T ss_conf 1899806-863279987677624551689850325314410232303311685368999999973488727744002120 Q ss_pred CCCHHHHCCCCEEEECCCCHHHHHHHH Q ss_conf 006677479989999389837899999 Q gi|254780294|r 41 RYREDLLNAADVSILCLPDVASLEIIQ 67 (311) Q Consensus 41 ~~~~~~~~~~Divf~a~p~~~s~~~~~ 67 (311) .+..++.++.|+++..|++-.++.|.. T Consensus 121 d~~~~FYk~F~~iicGLDsIeaRRwIN 147 (422) T KOG2015 121 DKPISFYKRFDLIICGLDSIEARRWIN 147 (422) T ss_pred CCCHHHHHHHCEEEECCCCHHHHHHHH T ss_conf 189789864156775344406787899 Done!