HHsearch alignment for GI: 254780294 and conserved domain: pfam02774
>pfam02774 Semialdhyde_dhC Semialdehyde dehydrogenase, dimerization domain. This Pfam entry contains the following members: N-acetyl-glutamine semialdehyde dehydrogenase (AgrC) Aspartate-semialdehyde dehydrogenase
Probab=99.92 E-value=1.3e-24 Score=171.60 Aligned_cols=153 Identities=19% Similarity=0.175 Sum_probs=115.6
Q ss_pred HHHHHHHC-CCCCCCCEEEEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC----------
Q ss_conf 78888850-3455650267651233335610000001344432234332222234444434201332167----------
Q gi|254780294|r 126 LRPLRKAK-LLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLI---------- 194 (311)
Q Consensus 126 L~PL~~~~-~i~~~~~~~~~~~sg~sgaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~e~~~~~~~---------- 194 (311)
T Consensus 1 L~PL~~~~~~i~~---Iiv~t~qgvSGAG~~~~~~~----~~~~i~~N~~py~~~~~h~h~~Ei~eel~~~~e~~~~l~~ 73 (167)
T pfam02774 1 LKPLRDALGGLER---VIVDTYQAVSGAGKKAKPGV----FGAPIADNLIPYIDGEEHNGTPETREELKMVNETKKILGF 73 (167)
T ss_pred CCCHHHHHCCCCE---EEEEECCCCCCCCCCCCCCC----CCHHHHCCEEEECCCHHHCCCHHHHHHHHHHCCCCEEECC
T ss_conf 9204464489979---99992110250678878678----6534328889425740304830688887774178367438
Q ss_pred CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHCC-CCEEEEE
Q ss_conf 113688752034332027899998632577544899886654220014430560278788789864276279-9607999
Q gi|254780294|r 195 KTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSG-NDKLHLF 273 (311)
Q Consensus 195 ~~~~~~~~~~~~~~~g~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~p~~~~~~g-~n~v~Vg 273 (311)
T Consensus 74 ~~~v~~T~~rVPv~rGh~~ti~v~~~--~~~~~~~~~~~~~~~~--~~~~v~v~~~-----~~~P~~~~v~g~tn~v~VG 144 (167)
T pfam02774 74 TPKVSATCVRVPVFRGHSETVTVKLK--LKPIDVEEVYEAFYAA--PGVFVVVRPE-----EDYPTPRAVRGGTNFVYVG 144 (167)
T ss_pred CCCCCCEEEECCEEEEEEEEEEEEEC--CCCHHHHHHHHHHHHC--CCCEEEECCC-----CCCCCCHHHHCCCCCEEEE
T ss_conf 98633258981408468999999954--8816599999999738--9988998998-----7887449991798858999
Q ss_pred EEEE-CC-CCEEEEEEEECCCHH
Q ss_conf 9980-89-976999997222101
Q gi|254780294|r 274 FFDS-SE-LPYINIIAVFDNLGK 294 (311)
Q Consensus 274 ~~~~-~~-~~~~~v~s~~DNL~K 294 (311)
T Consensus 145 rir~d~~~~~~l~~~sviDNL~K 167 (167)
T pfam02774 145 RVRKDPDGDRGLKLVSVIDNLRK 167 (167)
T ss_pred EEEECCCCCCEEEEEEEECCCCC
T ss_conf 98886899899999999725529