HHsearch alignment for GI: 254780294 and conserved domain: smart00859

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.96  E-value=1.6e-29  Score=201.93  Aligned_cols=100  Identities=26%  Similarity=0.377  Sum_probs=87.6

Q ss_pred             EEEEECCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCCCCCCH-----------------HHHCCCCEEEECCCCHHHHH
Q ss_conf             799975886789999999862997289999-653007860066-----------------77479989999389837899
Q gi|254780294|r    3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI-PCEERHNLRYRE-----------------DLLNAADVSILCLPDVASLE   64 (311)
Q Consensus         3 kVaIvGATG~vG~~li~lL~~hp~~~l~~l-~s~~~ag~~~~~-----------------~~~~~~Divf~a~p~~~s~~   64 (311)
T Consensus         1 kVaIvGatGyvG~eli~lL~~hp~~~~~~l~as~~~~G~~i~~~~~~l~~~~~~~~~~~~~~~~~~Dvvf~a~p~~~s~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCEEEECCCCHHHHH
T ss_conf             98998945199999999998589974577774046589757885966457735056533110017999999388278899


Q ss_pred             HHH---HHHHCCCCEEEECCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf             999---9861258489822763035554311002100047765
Q gi|254780294|r   65 IIQ---LIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKE  104 (311)
Q Consensus        65 ~~~---~~~~~g~~~~vid~ss~~R~~~~vpl~vPEvN~~~~~  104 (311)
T Consensus        81 ~~~~~~~~~~~g--~~VIDlSadfRl~~~~~~~lPEvN~~~i~  121 (122)
T smart00859       81 IAPLLPKAAEAG--VKVIDLSSAFRMDDDVPYGLPEVNPEAIK  121 (122)
T ss_pred             HHHHHHHHHHCC--CEEEECCHHHCCCCCCCEECCCCCHHHHC
T ss_conf             999889887569--87986847752789986699871988954