RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780294|ref|YP_003064707.1|
N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter
asiaticus str. psy62]
(311 letters)
>gnl|CDD|30351 COG0002, ArgC, Acetylglutamate semialdehyde dehydrogenase [Amino
acid transport and metabolism].
Length = 349
Score = 250 bits (641), Expect = 3e-67
Identities = 104/351 (29%), Positives = 153/351 (43%), Gaps = 61/351 (17%)
Query: 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLN------------ 48
M K+ I G G TGL++ + D+ L+ I ER + N
Sbjct: 2 MIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTI 61
Query: 49 --------AADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIA------------ 88
DV L LP S E++ + + G ++ID S R+
Sbjct: 62 DPEKIELDECDVVFLALPHGVSAELVPELLEAGC--KVIDLSADFRLKDPEVYEKWYGFT 119
Query: 89 -------PGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPI 141
VYG PE+ + EKIR A+ I NPGCY T AI L PL KA LL P
Sbjct: 120 HAGPELLEDAVYGLPELHR---EKIRGAKLIANPGCYPTAAILALAPLVKAGLLDPDSPP 176
Query: 142 TINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQY----SLIKTS 197
++A SG +G G+K + + D + Y L H+H PEI Q+ + K
Sbjct: 177 IVDAKSGVSGAGRKASVKNHFPEVND----SLRPYGLT-GHRHTPEIEQHLGRLAGRKVP 231
Query: 198 PMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIK 257
+F P +G F +GI I L +L EELH+ ++E+Y G+ V VVP K
Sbjct: 232 VIFTPHLGPFVRGILATIYL---KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTK 288
Query: 258 TIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLL 308
+A G++ + F + +++ DNL KGA+G A+QNM+++
Sbjct: 289 AVA-----GSNFCDIGFAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNIMF 334
>gnl|CDD|39555 KOG4354, KOG4354, KOG4354, N-acetyl-gamma-glutamyl-phosphate
reductase [Amino acid transport and metabolism].
Length = 340
Score = 128 bits (322), Expect = 2e-30
Identities = 90/264 (34%), Positives = 134/264 (50%), Gaps = 26/264 (9%)
Query: 48 NAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG--WVYGFPEMDKSQKEK 105
+A D ++ LP+ + L + + SRIID S R P WVYG PE++ +E
Sbjct: 85 HAVDHWVMALPNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELN--DRED 142
Query: 106 IRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNM 165
I++AR I NPGCYATG+ L PL KA L I VSGY+G G K KN
Sbjct: 143 IKNARLIANPGCYATGSQLPLVPLLKAILGKP----EIFGVSGYSGAGTK----PSPKND 194
Query: 166 PDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWK 225
+++N Y L H H EI+Q K + F P V ++ QGI + I + M++
Sbjct: 195 YSELANNLIPYGLT-DHIHEREISQR--SKVTVAFTPHVMQWFQGIQLTIYVPMKK---S 248
Query: 226 TNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFF-DSSELPYIN 284
+EEL +++ Y + +V V L++ +K + G+ +H+ F D
Sbjct: 249 VRTEELRQLYKTSYEDEELVHV--LDDVPLVKDVR-----GSHYVHMGGFPDRIPGDRAV 301
Query: 285 IIAVFDNLGKGASGAAIQNMDLLL 308
II+ DNL KGA+ A+QN++L+L
Sbjct: 302 IISTIDNLLKGAATQALQNLNLML 325
>gnl|CDD|144637 pfam01118, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. This Pfam entry contains the following members:
N-acetyl-glutamine semialdehyde dehydrogenase (AgrC)
Aspartate-semialdehyde dehydrogenase.
Length = 121
Score = 60.3 bits (147), Expect = 7e-10
Identities = 29/126 (23%), Positives = 47/126 (37%), Gaps = 24/126 (19%)
Query: 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERH----------NLRYREDL------ 46
K+ I G G G ++ + + L L+++ R L DL
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPPLELVALVASSRSAGKKVAFAGPWLTGGVDLLLEDVD 60
Query: 47 ---LNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQK 103
L D+ LP S E+ + + G +ID S+A R+ Y PE+ +
Sbjct: 61 PEDLKDVDIVFFALPAGVSKELAPKLLEAGA--VVIDLSSAFRMDDDVPYVLPEV---NR 115
Query: 104 EKIRSA 109
E I+ A
Sbjct: 116 EAIKKA 121
>gnl|CDD|30485 COG0136, Asd, Aspartate-semialdehyde dehydrogenase [Amino acid
transport and metabolism].
Length = 334
Score = 41.4 bits (97), Expect = 3e-04
Identities = 39/193 (20%), Positives = 67/193 (34%), Gaps = 23/193 (11%)
Query: 1 MYKIFIDGEHGTTGLKIRSRIVQR----KDLCLL-SIPCEERHNLRYR------------ 43
+ + G G G + + +R ++L LL S + + +
Sbjct: 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAAD 60
Query: 44 EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQ- 102
E + + D+ S E+ + G +ID S+A R+ P PE++
Sbjct: 61 EFVFSDVDIVFFAAGGSVSKEVEPKAAEAGC--VVIDNSSAFRMDPDVPLVVPEVNPEHL 118
Query: 103 KEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINAVSGYTG--GGKKLISRM 160
+ + I NP C + L+PL A + T AVSG G GG +L +
Sbjct: 119 IDYQKRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVVSTYQAVSG-AGAEGGVELAGQT 177
Query: 161 EQKNMPDTISSNH 173
+ I
Sbjct: 178 DALLNGIPILPIG 190
Score = 32.1 bits (73), Expect = 0.19
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 276 DSSELPYINIIAVFDNLGKGASGAAIQNMDLLL 308
D S + + V DNL KGA+ A+ +LLL
Sbjct: 302 DLSGPEGLKLWVVGDNLRKGAALNAVLIAELLL 334
>gnl|CDD|144818 pfam01366, PRTP, Herpesvirus processing and transport protein. The
members of this family are associate with capsid
intermediates during packaging of the virus.
Length = 635
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 172 NHFFYSLDLLHK-----HLPEITQ--YSLIKTSPMFLPSVGRFPQ 209
NH F L HLP +T Y LI P+F RFPQ
Sbjct: 532 NHKFIKNSLYRHRLDPEHLPSLTHQFYELI-NGPLFTHDTHRFPQ 575
>gnl|CDD|39974 KOG4777, KOG4777, KOG4777, Aspartate-semialdehyde dehydrogenase
[Amino acid transport and metabolism].
Length = 361
Score = 30.8 bits (69), Expect = 0.48
Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)
Query: 45 DLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMD----- 99
D N D+ L + EI +L + G I+ + +R G PE++
Sbjct: 73 DSFNECDIVFSGLDADIAGEIEKLFAEAGT--IIVSNAKNYRREDGVPLVVPEVNPEHLD 130
Query: 100 ----KSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPI-TINAVSG 148
K+ I N C + L+PL R + T A+SG
Sbjct: 131 GIKVGLDTGKMGKGAIIANSNCSTAICVMPLKPLHHHFGPIKRMVVSTYQAISG 184
>gnl|CDD|37308 KOG2097, KOG2097, KOG2097, Predicted N6-adenine methylase involved
in transcription regulation [Transcription].
Length = 397
Score = 29.6 bits (66), Expect = 1.2
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 85 HRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGA---IAILRP 128
+I PGW+ P++ S R Y N TG I +LRP
Sbjct: 327 SKIRPGWLTVGPDLTNSNFNPERYKEYFANAP-SLTGCTNEIELLRP 372
>gnl|CDD|146202 pfam03446, NAD_binding_2, NAD binding domain of
6-phosphogluconate dehydrogenase. The NAD binding
domain of 6-phosphogluconate dehydrogenase adopts a
Rossmann fold.
Length = 163
Score = 29.3 bits (67), Expect = 1.3
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 44 EDLLNAADVSILCLPDVASLE--------IIQLIKKNGINSRIIDTSTAH 85
+ +ADV I +P A+++ ++ +K I IID ST
Sbjct: 52 AEAAASADVVITMVPAGAAVDAVIFGEDGLLPGLKPGDI---IIDGSTIS 98
>gnl|CDD|37558 KOG2347, KOG2347, KOG2347, Sec5 subunit of exocyst complex
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 934
Score = 27.3 bits (60), Expect = 5.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 174 FFYSLDLLHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERL 222
F + LL K L E + + +F V F A+QI +D+E L
Sbjct: 823 FAIAPQLLDKILGETVEGISDELLRLFSCDVQSFSANGALQIMVDLEYL 871
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0862 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,773,724
Number of extensions: 199750
Number of successful extensions: 481
Number of sequences better than 10.0: 1
Number of HSP's gapped: 467
Number of HSP's successfully gapped: 12
Length of query: 311
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 217
Effective length of database: 4,232,491
Effective search space: 918450547
Effective search space used: 918450547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)