RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780294|ref|YP_003064707.1|
N-acetyl-gamma-glutamyl-phosphate reductase [Candidatus Liberibacter
asiaticus str. psy62]
(311 letters)
>gnl|CDD|183344 PRK11863, PRK11863, N-acetyl-gamma-glutamyl-phosphate reductase;
Provisional.
Length = 313
Score = 493 bits (1272), Expect = e-140
Identities = 150/309 (48%), Positives = 204/309 (66%), Gaps = 4/309 (1%)
Query: 1 MYKIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDV 60
K+FIDGE GTTGL+IR R+ R D+ LLSIP +R + R +LLNAADV+ILCLPD
Sbjct: 2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKDAAARRELLNAADVAILCLPDD 61
Query: 61 ASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYAT 120
A+ E + LI R+ID STAHR APGWVYGFPE+ Q+E+I +A+ + NPGCY T
Sbjct: 62 AAREAVALIDNPAT--RVIDASTAHRTAPGWVYGFPELAPGQRERIAAAKRVANPGCYPT 119
Query: 121 GAIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDL 180
GAIA+LRPL A LLP YP++INAVSGY+GGGK +I+ E PD + Y L L
Sbjct: 120 GAIALLRPLVDAGLLPADYPVSINAVSGYSGGGKAMIAAYE--AAPDGKAPAFRLYGLGL 177
Query: 181 LHKHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYM 240
HKHLPE+ ++ + P+F PSVG F QG+ + + L + L +E+LH+ ++Y
Sbjct: 178 AHKHLPEMQAHAGLARRPIFTPSVGNFRQGMLVTVPLHLRLLPGGPTAEDLHAALADHYA 237
Query: 241 GQNIVSVVPLEESRKIKTIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAA 300
G+ V V PL+ES + + E ++G ++L LF F + + ++A DNLGKGASGAA
Sbjct: 238 GEAFVRVAPLDESAALDFLDPEALNGTNRLELFVFGNEDHGQAVLVARLDNLGKGASGAA 297
Query: 301 IQNMDLLLS 309
+QN++L+L
Sbjct: 298 VQNLNLMLG 306
>gnl|CDD|162560 TIGR01851, argC_other, N-acetyl-gamma-glutamyl-phosphate reductase,
uncommon form. This model represents the less common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and gap architecture in a multiple sequence
alignment.
Length = 310
Score = 344 bits (883), Expect = 2e-95
Identities = 143/308 (46%), Positives = 204/308 (66%), Gaps = 4/308 (1%)
Query: 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHNLRYREDLLNAADVSILCLPDVAS 62
K+FIDGE GTTGL+IR R+ R D+ LLSI + R + R LLNAADV+ILCLPD A+
Sbjct: 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRKDAAERAKLLNAADVAILCLPDDAA 62
Query: 63 LEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGA 122
E + L+ + N+ IID STA+R A W YGFPE+ Q+EKIR+++ I NPGCY TG
Sbjct: 63 REAVSLV--DNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIRNSKRIANPGCYPTGF 120
Query: 123 IAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLH 182
IA++RPL +A +LP +PITINAVSGY+GGGK +I+ EQ + + Y L L H
Sbjct: 121 IALMRPLVEAGILPADFPITINAVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTH 180
Query: 183 KHLPEITQYSLIKTSPMFLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQ 242
KHLPE+ +S + P+F P+VG F QG+A+ I L ++ L+ K + ++H+ +YY G+
Sbjct: 181 KHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHLQTLASKVSPADIHAALADYYQGE 240
Query: 243 NIVSVVPLEESRKIK--TIACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAA 300
V V PL++ + + + ++G ++L LF F S + ++A DNLGKGASGAA
Sbjct: 241 QFVRVAPLDDVETLDNTFLDPQGLNGTNRLDLFVFGSDDGERALLVARLDNLGKGASGAA 300
Query: 301 IQNMDLLL 308
+QN++++L
Sbjct: 301 VQNLNIML 308
>gnl|CDD|178552 PLN02968, PLN02968, Probable N-acetyl-gamma-glutamyl-phosphate
reductase.
Length = 381
Score = 211 bits (539), Expect = 2e-55
Identities = 93/347 (26%), Positives = 150/347 (43%), Gaps = 61/347 (17%)
Query: 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSIPCEERHN------------------LRYRE 44
+IF+ G G TG ++R + D + + + + + ++
Sbjct: 40 RIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKD 99
Query: 45 DLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG-----W-------- 91
+ D CLP + EII+ + K+ +I+D S R+ W
Sbjct: 100 ADFSDVDAVFCCLPHGTTQEIIKALPKD---LKIVDLSADFRLRDIAEYEEWYGHPHRAP 156
Query: 92 ------VYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITINA 145
VYG E+ Q+E+I+SAR + NPGCY TG L PL KA L+ I I+A
Sbjct: 157 ELQKEAVYGLTEL---QREEIKSARLVANPGCYPTGIQLPLVPLVKAGLIEPD-NIIIDA 212
Query: 146 VSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQ----YSLIKTSPMFL 201
SG +G G+ + + I + Y + H+H+PEI Q + K +P F
Sbjct: 213 KSGVSGAGRGAKEANLYTEIAEGIGA----YGVT-RHRHVPEIEQGLADAAGSKVTPSFT 267
Query: 202 PSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIAC 261
P + +G+ + + + +E+LH +E Y G+ V V LE T
Sbjct: 268 PHLMPMSRGMQSTVYVHY---APGVTAEDLHQHLKERYEGEEFVKV--LERGAVPHT--- 319
Query: 262 EMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLL 308
+ + G++ L F II+V DNL KGASG A+QN++L++
Sbjct: 320 DHVRGSNYCELNVFADRIPGRAIIISVIDNLVKGASGQAVQNLNLMM 366
>gnl|CDD|162559 TIGR01850, argC, N-acetyl-gamma-glutamyl-phosphate reductase,
common form. This model represents the more common of
two related families of
N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme
catalyzing the third step or Arg biosynthesis from Glu.
The two families differ by phylogeny, similarity
clustering, and the gap architecture in a multiple
sequence alignment. Bacterial members of this family
tend to be found within Arg biosynthesis operons.
Length = 346
Score = 148 bits (377), Expect = 1e-36
Identities = 82/289 (28%), Positives = 127/289 (43%), Gaps = 44/289 (15%)
Query: 44 EDLLNAADVSILCLPDVASLEII-QLIKKNGINSRIIDTSTAHRIAP------------- 89
E++ ADV L LP S E+ +L+ ++ID S R+
Sbjct: 63 EEIAEDADVVFLALPHGVSAELAPELLAAG---VKVIDLSADFRLKDPEVYEKWYGFEHA 119
Query: 90 ------GWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITI 143
VYG PE+ +E+I+ AR I NPGCY T + L PL K L+ D I +
Sbjct: 120 GPELLQEAVYGLPEL---HREEIKGARLIANPGCYPTATLLALAPLLKEGLI-DPTSIIV 175
Query: 144 NAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQY----SLIKTSPM 199
+A SG +G G+K N ++ N Y + H+H PEI Q + K
Sbjct: 176 DAKSGVSGAGRKA----SPANHFPEVNENLRPYKVT-GHRHTPEIEQELGRLAGGKVKVS 230
Query: 200 FLPSVGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTI 259
F P + +GI I +L E+L + ++E+Y + V V+P E K +
Sbjct: 231 FTPHLVPMTRGILATIYA---KLKDGLTEEDLRAAYEEFYADEPFVRVLPEGEYPSTKAV 287
Query: 260 ACEMMSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLL 308
G++ + F + +++ DNL KGA+G A+QNM+L+
Sbjct: 288 I-----GSNFCDIGFAVDERTGRVVVVSAIDNLVKGAAGQAVQNMNLMF 331
>gnl|CDD|179024 PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase;
Validated.
Length = 343
Score = 147 bits (373), Expect = 4e-36
Identities = 80/285 (28%), Positives = 135/285 (47%), Gaps = 39/285 (13%)
Query: 44 EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPG------------- 90
++L ADV L LP S+++ + + G+ ++ID S R+
Sbjct: 63 PEILAGADVVFLALPHGVSMDLAPQLLEAGV--KVIDLSADFRLKDPEVYEKWYGFEHAA 120
Query: 91 ------WVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDRYPITIN 144
VYG PE+ +E+I+ AR I NPGCY T ++ L PL KA L+ D I I+
Sbjct: 121 PELLKEAVYGLPEL---NREEIKGARLIANPGCYPTASLLALAPLLKAGLI-DPDSIIID 176
Query: 145 AVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQY-SLIKTSPMFLPS 203
A SG +G G+K + + ++ N Y + H+H PEI Q S + F P
Sbjct: 177 AKSGVSGAGRKA----SEGTLFSEVNENLRPYKV-GGHRHTPEIEQELSALAGEVSFTPH 231
Query: 204 VGRFPQGIAIQISLDMERLSWKTNSEELHSIFQEYYMGQNIVSVVPLEESRKIKTIACEM 263
+ +GI I RL +E++ + ++E+Y + V V+P + + K++
Sbjct: 232 LVPMTRGILATIYA---RLKDPVTAEDVRAAYEEFYADEPFVRVLPEGQYPETKSVR--- 285
Query: 264 MSGNDKLHLFFFDSSELPYINIIAVFDNLGKGASGAAIQNMDLLL 308
G++ + F + +++ DNL KGA+G A+QNM+++
Sbjct: 286 --GSNFCDIGFAVDERTGRLVVVSAIDNLVKGAAGQAVQNMNIMF 328
>gnl|CDD|129092 smart00859, Semialdhyde_dh, Semialdehyde dehydrogenase, NAD binding
domain. The semialdehyde dehydrogenase family is found
in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC),
which is involved in arginine biosynthesis, and
aspartate-semialdehyde dehydrogenase, an enzyme involved
in the biosynthesis of various amino acids from
aspartate. This family is also found in yeast and fungal
Arg5,6 protein, which is cleaved into the enzymes
N-acety-gamma-glutamyl-phosphate reductase and
acetylglutamate kinase. These are also involved in
arginine biosynthesis. All proteins in this entry
contain a NAD binding region of semialdehyde
dehydrogenase.
Length = 122
Score = 63.3 bits (155), Expect = 7e-11
Identities = 28/115 (24%), Positives = 46/115 (40%), Gaps = 19/115 (16%)
Query: 3 KIFIDGEHGTTGLKIRSRIVQRKDLCLLSI---------PCEERH-NLRYREDLL----- 47
K+ I G G G ++ + + D ++++ E +L+ L
Sbjct: 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPED 60
Query: 48 ---NAADVSILCLPDVASLEIIQLIKKN-GINSRIIDTSTAHRIAPGWVYGFPEM 98
A D+ L LP S EI L+ K ++ID S+A R+ YG PE+
Sbjct: 61 FEELAVDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEV 115
>gnl|CDD|162144 TIGR00978, asd_EA, aspartate-semialdehyde dehydrogenase
(non-peptidoglycan organisms). Two closely related
families of aspartate-semialdehyde dehydrogenase are
found. They differ by a deep split in phylogenetic and
percent identity trees and in gap patterns. Separate
models are built for the two types in order to exclude
the USG-1 protein, found in several species, which is
specifically related to the Bacillus subtilis type of
aspartate-semialdehyde dehydrogenase. Members of this
type are found primarily in organisms that lack
peptidoglycan.
Length = 341
Score = 38.2 bits (89), Expect = 0.003
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 15/137 (10%)
Query: 25 KDLCLLSIPC---EERHNLRYR---EDLLNAADVSILCLPDVASLEIIQLIKKNGINSRI 78
+ P E +L D+ LP + E+ + + G +
Sbjct: 43 GEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSALPSEVAEEVEPKLAEAGKP--V 100
Query: 79 IDTSTAHRIAPGWVYGFPEMD-------KSQKEKIRSARYITNPGCYATGAIAILRPLRK 131
++ HR+ P PE++ K QKE+ +TNP C G L+PL
Sbjct: 101 FSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPLID 160
Query: 132 AKLLPDRYPITINAVSG 148
A + + T+ AVSG
Sbjct: 161 AFGIKKVHVTTMQAVSG 177
>gnl|CDD|162290 TIGR01296, asd_B, aspartate-semialdehyde dehydrogenase
(peptidoglycan organisms). Two closely related families
of aspartate-semialdehyde dehydrogenase are found. They
differ by a deep split in phylogenetic and percent
identity trees and in gap patterns. This model
represents a branch more closely related to the USG-1
protein than to the other aspartate-semialdehyde
dehydrogenases represented in model TIGR00978.
Length = 339
Score = 33.2 bits (76), Expect = 0.079
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 78 IIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPD 137
+ID ++A R+ P PE++ ++ + I NP C + +L+PL +
Sbjct: 88 VIDNTSAFRMDPDVPLVVPEVNLEDLKEFNTKGIIANPNCSTIQMVVVLKPLHDEAKIKR 147
Query: 138 RYPITINAVSG 148
T AVSG
Sbjct: 148 VVVSTYQAVSG 158
>gnl|CDD|136022 PRK06728, PRK06728, aspartate-semialdehyde dehydrogenase;
Provisional.
Length = 347
Score = 30.0 bits (67), Expect = 0.87
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 78 IIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPD 137
+ID ++ +R+A PE++ ++ + I P C A + L+P+RK L
Sbjct: 95 VIDNTSEYRMAHDVPLVVPEVNAHTLKEHK--GIIAVPNCSALQMVTALQPIRKVFGLER 152
Query: 138 RYPITINAVSG 148
T AVSG
Sbjct: 153 IIVSTYQAVSG 163
>gnl|CDD|181530 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 349
Score = 29.4 bits (67), Expect = 1.3
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 99 DKSQKEKIRSARYITNPGCYATGAIAILRPLRKAKLLPDR-YPITINAVS--GYTG 151
+ +K + +TNP C G + L+PL +R + T+ A+S GY G
Sbjct: 132 EVQRKRRGWDGFIVTNPNCSTIGLVLALKPLMDFG--IERVHVTTMQAISGAGYPG 185
>gnl|CDD|129290 TIGR00186, rRNA_methyl_3, rRNA methylase, putative, group 3. this
is part of the trmH (spoU) family of rRNA methylases.
Length = 237
Score = 27.7 bits (62), Expect = 3.6
Identities = 20/94 (21%), Positives = 36/94 (38%), Gaps = 25/94 (26%)
Query: 64 EIIQLIKKNGINSRIIDTSTAH-------------RIAPGWVYGFPEMDKSQKEKIRSAR 110
++IQL KK GIN +++D ++ P ++ K+ K K +
Sbjct: 33 KLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAAKVKPILYKDLNDLYKTAKSKKQPFL 92
Query: 111 Y----ITNPG--------CYATGAIAILRPLRKA 132
IT+P A G ++ P R++
Sbjct: 93 LILDEITDPHNLGAILRTAEAFGVDGVILPKRRS 126
>gnl|CDD|163025 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. The Tol-PAL system is required for
bacterial outer membrane integrity. E. coli TolB is
involved in the tonB-independent uptake of group A
colicins (colicins A, E1, E2, E3 and K), and is
necessary for the colicins to reach their respective
targets after initial binding to the bacteria. It is
also involved in uptake of filamentous DNA. Study of its
structure suggest that the TolB protein might be
involved in the recycling of peptidoglycan or in its
covalent linking with lipoproteins. The Tol-Pal system
is also implicated in pathogenesis of E. coli,
Haemophilus ducreyi, Salmonella enterica and Vibrio
cholerae, but the mechanism(s) is unclear.
Length = 417
Score = 26.9 bits (60), Expect = 6.6
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)
Query: 143 INAVSGYTGGGKKLISRMEQKNMPDTISSNHFFYSLDLLHKHLPEITQYSLIKTSPMFLP 202
+N ++ G KL + + PD Y +DL K L +T I T P + P
Sbjct: 235 MNGAPAFSPDGSKLAVSLSKDGNPD-------IYVMDLDGKQLTRLTNGPGIDTEPSWSP 287
>gnl|CDD|184143 PRK13561, PRK13561, putative diguanylate cyclase; Provisional.
Length = 651
Score = 26.6 bits (59), Expect = 8.8
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 15/76 (19%)
Query: 57 LPDVASLEIIQLIKKNGINSRIIDTSTAHRIAPGWVYGFPEMDKSQKEKIRSARYITNPG 116
LP +L +QL+ N + + +++ T +RI PG + E+ +S++ I +P
Sbjct: 486 LPLSVNLSALQLMHPNMV-ADMLELLTRYRIQPGTL--ILEVTESRR--------IDDP- 533
Query: 117 CYATGAIAILRPLRKA 132
A+AILRPLR A
Sbjct: 534 ---HAAVAILRPLRNA 546
>gnl|CDD|132324 TIGR03281, methan_mark_12, putative methanogenesis marker protein
12. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Length = 326
Score = 26.3 bits (58), Expect = 9.6
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 117 CYATG-AIAILRPLRKAKLLPDRYPITINAVSGYTGGGKKLISRMEQKNMP 166
Y+ G I+ + P+ + K +R +I TGGG ++ +++ +P
Sbjct: 57 TYSMGDGISKITPIERVK---NRGLQSIEGAGKKTGGGTRVYDEIKESGIP 104
>gnl|CDD|179892 PRK04922, tolB, translocation protein TolB; Provisional.
Length = 433
Score = 26.6 bits (59), Expect = 9.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 176 YSLDLLHKHLPEITQYSLIKTSPMFLP 202
Y +DL + L +T + I T P + P
Sbjct: 275 YVMDLGSRQLTRLTNHFGIDTEPTWAP 301
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.321 0.138 0.402
Gapped
Lambda K H
0.267 0.0660 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,101,033
Number of extensions: 326201
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 17
Length of query: 311
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 218
Effective length of database: 3,984,929
Effective search space: 868714522
Effective search space used: 868714522
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)