HHsearch alignment for GI: 254780295 and conserved domain: PRK00021
>PRK00021 truA tRNA pseudouridine synthase A; Validated.
Probab=100.00 E-value=0 Score=576.91 Aligned_cols=244 Identities=49% Similarity=0.775 Sum_probs=240.0
Q ss_pred CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 92299999971668720048753877889999999997099569997112138612223468864063211046899999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN 80 (247)
T Consensus 1 M~r~~l~i~YdGt~y~G~Q~Q~~~~TVq~~le~aL~~~~~~~~~~~~agRTD~GVHA~~qv~~f~~~~~~~~~~l~~~lN 80 (244)
T PRK00021 1 MMRYALTIEYDGTNFHGWQRQPNVRTVQGELEKALSKIAGEPVRVIGAGRTDAGVHALGQVAHFDTPADRPPEKWRRALN 80 (244)
T ss_pred CCEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 93799999997998128735889989999999999997498538998514667843246689997388899999999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC
Q ss_conf 86188876543443226777550002100223556852443202333210244333335665565676520011001024
Q gi|254780295|r 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 (247)
Q Consensus 81 ~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~ 160 (247)
T Consensus 81 ~~L--p~dI~V~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~f~G~HDF~~F~~ 158 (244)
T PRK00021 81 ALL--PDDIAVLWAEEVPDDFHARFSATARRYRYRIYNRPFRPPLLRGYVWHYPRPLDVEAMNEAAQYLLGTHDFTSFRA 158 (244)
T ss_pred HHC--CHHHHHHEEEECCCCCCEEEECCEEEEEEEEECCCCCCHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCHHHCCC
T ss_conf 668--740334310224887462750302699998505777983552661344376669999999998138843441047
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 56553332110331111233320011315888899999999999999976899888999998358821166636989847
Q gi|254780295|r 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 (247)
Q Consensus 161 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 240 (247)
T Consensus 159 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~sFL~~mVR~mVg~ll~v~~g~~~~~~i~~~l~~~~r~~~~~~APa~GL~ 238 (244)
T PRK00021 159 SGCQSKSPVRTIYEADVTRDGDFIVFDISANGFLHNMVRNIVGTLLEVGKGKRPPEWIKELLEAKDRKLAGPTAPAEGLY 238 (244)
T ss_pred CCCCCCCCCEEEEEEEEEEECCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf 99999997279999999992888999987778999999999999999987999999999998667855587745898758
Q ss_pred EEEEEE
Q ss_conf 633043
Q gi|254780295|r 241 FDSVEY 246 (247)
Q Consensus 241 L~~V~Y 246 (247)
T Consensus 239 L~~V~Y 244 (244)
T PRK00021 239 LVRVDY 244 (244)
T ss_pred EEEEEC
T ss_conf 931299