HHsearch alignment for GI: 254780295 and conserved domain: PRK12434
>PRK12434 tRNA pseudouridine synthase A; Reviewed.
Probab=100.00 E-value=0 Score=577.17 Aligned_cols=244 Identities=38% Similarity=0.629 Sum_probs=238.8
Q ss_pred CCEEEEEEEECCCCCEEEEECC-CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 9229999997166872004875-387788999999999709956999711213861222346886406321104689999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQK-NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~-~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l 79 (247)
T Consensus 1 M~~~~l~i~YdGt~f~G~Q~Q~~~~~TVq~~le~aL~~~~~~~v~~~~agRTD~GVHA~~Qv~~f~~~~~~~~~~l~~~l 80 (245)
T PRK12434 1 MRNIKLTIQYDGSRYKGWQKLGNNDNTIQGKIESVLSEMTGEEIELIGCGRTDAGVHALNQVANFHTDEKLSEDKIKKYL 80 (245)
T ss_pred CCEEEEEEEEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 94799999990897016867799898889999999999749971899876787882815008999758879989999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf 98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 (247)
Q Consensus 80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~ 159 (247)
T Consensus 81 N~~L--P~dI~v~~~~~v~~~FhaR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~m~~a~~~~~G~HDF~~F~ 158 (245)
T PRK12434 81 NEYL--PNDIVVTNVEEVSERFHARYNVKSKTYLYKIWNEKFHDVFMRKYSYHVNEKLDVKAMKEAAKYLVGSHDFTSFT 158 (245)
T ss_pred HHHC--CCCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHC
T ss_conf 8268--98751255685699968642176651897755788899778576533050226999999998711776589870
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 45655333211033111123332001131588889999999999999997689988899999835882116663698984
Q gi|254780295|r 160 SIHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239 (247)
Q Consensus 160 ~~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL 239 (247)
T Consensus 159 ~~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL 238 (245)
T PRK12434 159 NAKSKKKSTVRTIYSIDIMEEDGFVQIRVSGNGFLHNMVRIIVGALIEVGLGQLKAEDIKDILEAKDRNQANCTAPASGL 238 (245)
T ss_pred CCCCCCCCCEEEEEEEEEEECCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 77989999749999999996675999986665889999999999999998699999999999857883348886699877
Q ss_pred EEEEEEE
Q ss_conf 7633043
Q gi|254780295|r 240 YFDSVEY 246 (247)
Q Consensus 240 ~L~~V~Y 246 (247)
T Consensus 239 ~L~~V~Y 245 (245)
T PRK12434 239 YLENVEY 245 (245)
T ss_pred EECCCCC
T ss_conf 8811599