HHsearch alignment for GI: 254780295 and conserved domain: pfam10105
>pfam10105 DUF2344 Uncharacterized protein conserved in bacteria (DUF2344). This domain, found in various hypothetical bacterial proteins and Radical Sam domain proteins, has no known function.
Probab=96.96 E-value=0.012 Score=35.61 Aligned_cols=143 Identities=16% Similarity=0.157 Sum_probs=95.4
Q ss_pred CCHHHHHHHHHHHH---------HCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 77889999999997---------099569997112138612223468864063211046899999861888765434432
Q gi|254780295|r 25 SSIQGSIEKAIFLV---------TGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALNAYLKISDTISILNLS 95 (247)
Q Consensus 25 ~TVq~~le~aL~~~---------~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN~~L~~p~~Irv~~~~ 95 (247)
T Consensus 18 LDl~r~~eRa~RRa~lP~a~S~GF~Phpkisf~~aLpvG~~S~~Ey~di~l~~~~~~~~~~~rLn~~L--P~Gi~i~~~~ 95 (186)
T pfam10105 18 LDLMRLFERALRRAGLPIAFSEGFHPHPRISFALALPVGVESEGEYMDLELTEEIDPEEVRERLNAQL--PEGLEILEVE 95 (186)
T ss_pred HHHHHHHHHHHHHCCCCHHHHCCCCCCCCEEECCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCC--CCCCEEEEEE
T ss_conf 88999999999981897687379899972744467556524032599999816589999999985239--9995789999
Q ss_pred CCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC-CCCC--CCCCCCCC
Q ss_conf 26777550002100223556852443202333210244333335665565676520011001024-5655--33321103
Q gi|254780295|r 96 IVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS-IHCQ--ASSPIRTI 172 (247)
Q Consensus 96 ~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~-~~~~--~~~~~R~I 172 (247)
T Consensus 96 ~i~~~~~sl-~~~v~~a~Y~v~~~----------------~~~~~~~~~~i~~~l~~~~i~v~r~tKKGk~~~~diRp~i 158 (186)
T pfam10105 96 EIPVKAPSL-MALIEAAEYRITLP----------------EESPEDLEEAVEAFLAAEELVVERTTKKGKKREVDIRPLL 158 (186)
T ss_pred ECCCCCCCH-HHHHEEEEEEEEEC----------------CCCHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEHHHHH
T ss_conf 936888655-54410599999906----------------8998999999999986990899996699987788815500
Q ss_pred CCCCCCCCCCHHHH
Q ss_conf 31111233320011
Q gi|254780295|r 173 DHFDVNSFGNLIEI 186 (247)
Q Consensus 173 ~~~~v~~~~~~i~i 186 (247)
T Consensus 159 ~~l~~~~~~~~~~l 172 (186)
T pfam10105 159 KELELEGDGNALVL 172 (186)
T ss_pred HEEEEEECCCEEEE
T ss_conf 05999917997999