Query gi|254780295|ref|YP_003064708.1| tRNA pseudouridine synthase A [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 247
No_of_seqs 126 out of 3058
Neff 7.3
Searched_HMMs 33803
Date Tue May 24 18:06:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780295.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1dj0_A Pseudouridine synthase 100.0 0 0 539.2 16.3 245 1-247 3-247 (264)
2 >1vs3_A TRNA pseudouridine syn 100.0 0 0 525.4 13.0 244 1-247 1-247 (249)
3 >2pke_A Haloacid delahogenase- 57.3 11 0.00034 17.9 3.3 34 189-226 47-80 (88)
4 >1u02_A Trehalose-6-phosphate 56.9 9.3 0.00027 18.4 2.8 46 5-51 3-48 (163)
5 >3ddh_A Putative haloacid deha 53.4 16 0.00046 17.1 3.5 35 188-226 44-78 (85)
6 >2hh8_A Hypothetical protein Y 36.5 14 0.00042 17.4 1.1 56 106-161 43-99 (149)
7 >1qys_A TOP7; alpha-beta, nove 36.2 30 0.00088 15.5 2.8 50 5-54 7-59 (106)
8 >2jvf_A De novo protein M7; te 34.3 32 0.00095 15.3 2.9 51 4-54 8-61 (96)
9 >3fy4_A 6-4 photolyase; DNA re 27.3 30 0.00089 15.4 1.5 38 185-222 31-68 (129)
10 >2jgp_A Tyrocidine synthetase 19.1 51 0.0015 14.1 1.4 36 119-154 26-61 (229)
No 1
>>1dj0_A Pseudouridine synthase I; alpha/beta fold, RNA-binding motif, RNA-modifying enzyme, lyase; 1.50A {Escherichia coli} (A:)
Probab=100.00 E-value=0 Score=539.25 Aligned_cols=245 Identities=37% Similarity=0.573 Sum_probs=241.3
Q ss_pred CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf 92299999971668720048753877889999999997099569997112138612223468864063211046899999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN 80 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN 80 (247)
|+||++.|+||||+|+|||+||+.+|||++||+||.++.++++.+.+|||||+||||++|++||+++.++++..+...||
T Consensus 3 ~~~~~l~i~Y~Gt~f~G~q~q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~~~~~~~~~~~~~~~~lN 82 (264)
T 1dj0_A 3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVN 82 (264)
T ss_dssp CEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCCCCHHHHHHHHH
T ss_pred CEEEEEEEEEECCCCCEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 57999999997997014727889989999999999996399807997055667815555379986265457499999998
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC
Q ss_conf 86188876543443226777550002100223556852443202333210244333335665565676520011001024
Q gi|254780295|r 81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS 160 (247)
Q Consensus 81 ~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~ 160 (247)
+.| |+||+|+++.+|+++||||++|++|+|+|+++.+..++++.+++.|+....+|+++|++||+.|+|+|||++||+
T Consensus 83 ~~L--p~dI~v~~~~~v~~~F~aR~~~~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~HDF~~F~~ 160 (264)
T 1dj0_A 83 ANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA 160 (264)
T ss_dssp HTS--CTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCC
T ss_pred HCC--CCCEEEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 239--977289489988987776434760599999767877985672844675366799999999987538666378853
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 56553332110331111233320011315888899999999999999976899888999998358821166636989847
Q gi|254780295|r 161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240 (247)
Q Consensus 161 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~ 240 (247)
.+.+.++++|+|.++++.+..+.+.|+|+|+||||||||+|||+++++|+|++++++|.++|+++++...+++|||+||+
T Consensus 161 ~~~~~~~~~r~i~~~~~~~~~~~~~~~i~g~sFL~~qVR~mvg~li~vg~g~~~~~~i~~~L~~~~~~~~~~~APa~GL~ 240 (264)
T 1dj0_A 161 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY 240 (264)
T ss_dssp TTCCCSCCEEEEEEEEEEEETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEE
T ss_pred CCCCCCCCEEEEEEEEEEEECCEEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf 69999997699999999951999999999765889999999999999987999999999998568866687767898767
Q ss_pred EEEEEEC
Q ss_conf 6330439
Q gi|254780295|r 241 FDSVEYS 247 (247)
Q Consensus 241 L~~V~Y~ 247 (247)
|++|.|.
T Consensus 241 L~~v~y~ 247 (264)
T 1dj0_A 241 LVAVDYP 247 (264)
T ss_dssp EEEEECC
T ss_pred EEECCCC
T ss_conf 8001479
No 2
>>1vs3_A TRNA pseudouridine synthase A; TRUA, tRNA modification, structural genomics, NPPSFA; 2.25A {Thermus thermophilus HB8} (A:)
Probab=100.00 E-value=0 Score=525.39 Aligned_cols=244 Identities=35% Similarity=0.536 Sum_probs=234.7
Q ss_pred CCEEEEEEEECCCCCEEEEECCCC-CCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHH
Q ss_conf 922999999716687200487538-7788999999999709956999711213861222346886406321104689999
Q gi|254780295|r 1 MIRYCMIIEYNGSGYFGWQRQKNG-SSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKAL 79 (247)
Q Consensus 1 M~r~~~~i~YdGt~y~G~q~Q~~~-~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~l 79 (247)
|.||++.|+||||+|+|||+||+. +|||++||+||.++ +..+++.+|||||+||||++|+++|+++.++++..+...+
T Consensus 1 M~~~~l~i~Y~Gt~f~G~q~q~~~~~TVq~~le~aL~~~-~~~~~~~~agRTD~GVhA~~qv~~~~~~~~~~~~~~~~~l 79 (249)
T 1vs3_A 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALAMPFHVDVESAIPVEKVPEAL 79 (249)
T ss_dssp CEEEEEEEEECGGGCSBSSCCCTTCCCHHHHHHHHGGGG-TBCSCCEESSCCBTTCEEEEEEEEEEECSCCCGGGHHHHH
T ss_pred CCEEEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHH-CCCCEEEEEEEECCCCCHHEEEEEEECCCCCCCHHCHHHH
T ss_conf 948999999979980177588999988999999999982-6851688763100231100024456113233310010110
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEEC
Q ss_conf 98618887654344322677755000210022355685244320233321024433333566556567652001100102
Q gi|254780295|r 80 NAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFR 159 (247)
Q Consensus 80 N~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~ 159 (247)
|..| |+||+|+++.+|+++||||++|++|+|+|+|+++..++++...+.|+..+++|+++|++||+.|+|+|||++||
T Consensus 80 n~~L--p~~I~i~~~~~v~~~F~ar~~~~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~HdF~~F~ 157 (249)
T 1vs3_A 80 NRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVRPHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFA 157 (249)
T ss_dssp HHHS--CTTEEEEEEEEECTTCCTTTTCSEEEEEEEEEECSSCCTTTTTTSEEECSCCCHHHHHHHHHHHSEEEEGGGGC
T ss_pred CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHCCCCCEEEECCHHHHHHHHHHCCCCCCCCCCC
T ss_conf 1459--95322542220143113212334352256886167899556066421223045899999999829945100123
Q ss_pred CCCCCCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 4565533321103311112--33320011315888899999999999999976899888999998358821166636989
Q gi|254780295|r 160 SIHCQASSPIRTIDHFDVN--SFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237 (247)
Q Consensus 160 ~~~~~~~~~~R~I~~~~v~--~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~ 237 (247)
+.+++.+++.|++..+++. ..++++.++|+|+||||+|||+|||+|+++|+|++++++|+++|+++++...+|+|||+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~~~~~~~~APa~ 237 (249)
T 1vs3_A 158 KEETRPGERELLEARLQVAEGEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237 (249)
T ss_dssp SSCCSCCEEEEEEEEEEEEECSSSEEEEEEEEESCCCTTHHHHHHHHHHHHHHSSSCGGGHHHHHHHCCGGGSCCCCCGG
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 45656886315788741111444332479997146898889999999999977999999999998768855585736997
Q ss_pred CCEEEEEEEC
Q ss_conf 8476330439
Q gi|254780295|r 238 GLYFDSVEYS 247 (247)
Q Consensus 238 GL~L~~V~Y~ 247 (247)
||+|++|.|.
T Consensus 238 GL~L~~v~Y~ 247 (249)
T 1vs3_A 238 GLYFVEAAYP 247 (249)
T ss_dssp GEEEEEEECC
T ss_pred CCEECCCCCC
T ss_conf 7788953788
No 3
>>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, structural genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV} (A:25-112)
Probab=57.28 E-value=11 Score=17.87 Aligned_cols=34 Identities=9% Similarity=0.166 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 58888999999999999999768998889999983588
Q gi|254780295|r 189 VARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 (247)
Q Consensus 189 ~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~ 226 (247)
=.+||+ +.|+-|++++..|+++.+.|.++++...
T Consensus 47 G~K~F~----LSmIEtA~~vt~~~v~~~~i~~Ii~~Gk 80 (88)
T 2pke_A 47 GAKGXT----LSXIETAIELTEARIEARDIQRIVEIGR 80 (88)
T ss_dssp SHHHHH----HHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHH----HHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 577778----8999999886414798999999999999
No 4
>>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI, protein structure initiative; 1.92A {Thermoplasma acidophilum} (A:1-82,A:159-239)
Probab=56.95 E-value=9.3 Score=18.42 Aligned_cols=46 Identities=13% Similarity=0.179 Sum_probs=36.3
Q ss_pred EEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999716687200487538778899999999970995699971121
Q gi|254780295|r 5 CMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRT 51 (247)
Q Consensus 5 ~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RT 51 (247)
.+.+-|||| -..|+..|+...+...+..+|..+.....-.+.+||-
T Consensus 3 Li~lD~DGT-L~p~~~~p~~~~~~~~~~~~L~~L~~~~~V~IvSGR~ 48 (163)
T 1u02_A 3 LIFLDYDGT-LVPIIXNPEESYADAGLLSLISDLKERFDTYIVTGRS 48 (163)
T ss_dssp EEEEECBTT-TBCCCSCGGGCCCCHHHHHHHHHHHHHSEEEEECSSC
T ss_pred EEEEECCCC-CCCCCCCHHHCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 999985565-4889789755889999999999981599799998998
No 5
>>3ddh_A Putative haloacid dehalogenase-like family hydrolase; HAD superfamily, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron} (A:20-104)
Probab=53.43 E-value=16 Score=17.12 Aligned_cols=35 Identities=14% Similarity=0.216 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
Q ss_conf 158888999999999999999768998889999983588
Q gi|254780295|r 188 VVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQD 226 (247)
Q Consensus 188 i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~ 226 (247)
.=.+||...| |-|++++..|+++.+.|.++++...
T Consensus 44 YGiKgFtLSM----IEtAi~vt~g~v~~~~I~~Ii~~Gk 78 (85)
T 3ddh_A 44 YGAKAFTISX----VETALQISNGKIAADIIRQIVDLGK 78 (85)
T ss_dssp SSHHHHHHHH----HHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 1356677888----8999875114672999999999999
No 6
>>2hh8_A Hypothetical protein YDFO; structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Escherichia coli} (A:)
Probab=36.49 E-value=14 Score=17.36 Aligned_cols=56 Identities=11% Similarity=0.013 Sum_probs=36.1
Q ss_pred CCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH-HCCHHEEEECCC
Q ss_conf 21002235568524432023332102443333356655656765-200110010245
Q gi|254780295|r 106 SAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHL-VGRHDFTTFRSI 161 (247)
Q Consensus 106 ~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l-~G~HdF~~F~~~ 161 (247)
+...-++.|...++..-..-.....-.+...+|.+++++|++.- .|+.||.-||+.
T Consensus 43 ~v~~g~~~Y~~~~g~~i~~~~~~~~~~Va~~~d~~~i~~air~~QaG~~~F~~Fc~~ 99 (149)
T 2hh8_A 43 YLATENVHIVLKNDNTVLLKGLKNIVSVKFSKDRHLIETTSNKLKSREITFQEYRRN 99 (149)
T ss_dssp ETTTTEEEEECSSSCEEEEECSTTCCCCCSCCCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred EECCCCEEEEECCCCEEEEECCCCCEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 932797999954998999735766267056579999999999987499659999999
No 7
>>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} (A:)
Probab=36.22 E-value=30 Score=15.48 Aligned_cols=50 Identities=14% Similarity=0.030 Sum_probs=28.9
Q ss_pred EEEEEECCCCCEEEEEC---CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 99999716687200487---538778899999999970995699971121386
Q gi|254780295|r 5 CMIIEYNGSGYFGWQRQ---KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 (247)
Q Consensus 5 ~~~i~YdGt~y~G~q~Q---~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G 54 (247)
-+.|+-||.+|.=--.- ...--+-.+||++|.+-..+.+++.-+.|||+-
T Consensus 7 ~i~I~~~Gq~~e~~~~VsT~~ELer~L~ELe~~l~r~GAr~V~ItIsA~~~~q 59 (106)
T 1qys_A 7 QVNIDDNGKNFDYTYTVTTESELQKVLNELXDYIKKQGAKRVRISITARTKKE 59 (106)
T ss_dssp EEEEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHH
T ss_pred EEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf 99985798188899998054899999999999998717645899999666788
No 8
>>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} (A:)
Probab=34.29 E-value=32 Score=15.29 Aligned_cols=51 Identities=16% Similarity=0.040 Sum_probs=30.1
Q ss_pred EEEEEEECCCCCEEEEECC---CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 9999997166872004875---38778899999999970995699971121386
Q gi|254780295|r 4 YCMIIEYNGSGYFGWQRQK---NGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSG 54 (247)
Q Consensus 4 ~~~~i~YdGt~y~G~q~Q~---~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~G 54 (247)
.-+.|+-||.+|.=--.-. ..--+-.+||++|.+-..+.+++.-+.|||+-
T Consensus 8 i~i~I~~~Gq~~e~~~~VsT~~ELer~L~EL~~~l~r~GAr~V~ItIsA~~~~q 61 (96)
T 2jvf_A 8 ITIKIQRDGQEIEIDIRVSTGKELERALQELEKALARAGARNVQITISAENDEQ 61 (96)
T ss_dssp EEEEEEETTEEEEEEEECCSSSHHHHHHHHHHHHHHHHTCSEEEEEEECSSHHH
T ss_pred EEEEECCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCHHH
T ss_conf 999984698288899998143899999999999998617644899999656678
No 9
>>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana} (A:323-451)
Probab=27.30 E-value=30 Score=15.44 Aligned_cols=38 Identities=13% Similarity=0.144 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 11315888899999999999999976899888999998
Q gi|254780295|r 185 EIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKAL 222 (247)
Q Consensus 185 ~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L 222 (247)
.-.+...|+|+|-+|.||+.-+.-..+.++.....+.+
T Consensus 31 ~r~L~~tG~~h~~~R~~~a~~~~~~l~~~~w~~g~~~f 68 (129)
T 3fy4_A 31 MVQLLKWGWMHHLARHCVACFLTRGDLFIHWEQGRDVF 68 (129)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHTTTTTCBCHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 99975415424288999999998741388766629998
No 10
>>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis} (A:88-265,A:407-457)
Probab=19.08 E-value=51 Score=14.11 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHH
Q ss_conf 443202333210244333335665565676520011
Q gi|254780295|r 119 RQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHD 154 (247)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~Hd 154 (247)
......+.-...+.+.+++|.+++++|++.++..|+
T Consensus 26 ~~~~~~yni~~~~~l~g~ld~~~l~~Al~~lv~rH~ 61 (229)
T 2jgp_A 26 EGVGISYNMPSTMLIEGKLERTRVEAAFQRLIARHE 61 (229)
T ss_dssp TCCTTTTBCCEEEEEEECCCHHHHHHHHHHHHHHCG
T ss_pred CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf 788874124799845898799999999999997071
Done!