HHSEARCH alignment of GI: 254780295 and SCOP domain: d1dj0a_

Alignment
>d1dj0a_ d.265.1.1 (A:) Pseudouridine synthase I TruA {Escherichia coli [TaxId: 562]}
Probab=100.00  E-value=0  Score=540.27  Aligned_cols=245  Identities=37%  Similarity=0.573  Sum_probs=239.4

Q ss_pred             CCEEEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHH
Q ss_conf             92299999971668720048753877889999999997099569997112138612223468864063211046899999
Q gi|254780295|r    1 MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQVAHFDLVREWVPVILCKALN   80 (247)
Q Consensus         1 M~r~~~~i~YdGt~y~G~q~Q~~~~TVq~~le~aL~~~~~~~~~~~~a~RTD~GVhA~~qv~~f~~~~~~~~~~~~~~lN   80 (247)
                      |.||++.|+||||+|+|||+||+.+||||+||+||.+++++++.+.+|||||+||||++||+||+++...+.+.+...||
T Consensus         3 ~~r~al~i~Y~Gt~f~G~Q~Q~~~~TVq~~Le~aL~~~~~~~~~~~~agRTD~GVhA~~qv~~~~~~~~~~~~~~~~~lN   82 (264)
T d1dj0a_           3 VYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALSQVANEPITVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVN   82 (264)
T ss_dssp             CEEEEEEEEECCTTSSCSCCTTCSSCHHHHHHHHHHHHHTSCCCEEESSCCCTTCEEEEEEEEEEESCCCCHHHHHHHHH
T ss_pred             CEEEEEEEEEECCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEEECCCHHHHHHHCCCC
T ss_conf             47999999997997125758969979999999999996399738998402467733166799975122000111000001


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEEEEECCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHEEEECC
Q ss_conf             86188876543443226777550002100223556852443202333210244333335665565676520011001024
Q gi|254780295|r   81 AYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRS  160 (247)
Q Consensus        81 ~~L~~p~~Irv~~~~~v~~~FhaR~~a~~R~Y~Y~i~~~~~~~~~~~~~~~~~~~~lD~~~l~~a~~~l~G~HdF~~F~~  160 (247)
                      +.|  |+||+|+++.+|+++||||++|++|+|+|++.++..++++.+.+.|+...++|+++|++|++.|+|+|||++||+
T Consensus        83 ~~L--p~dI~i~~~~~v~~~F~aR~~a~~r~Y~Y~i~~~~~~~~~~~~~~~~~~~~ld~~~m~~a~~~~~G~hdF~~F~~  160 (264)
T d1dj0a_          83 ANL--PGDIAVRWVKTVPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGENDFTSFRA  160 (264)
T ss_dssp             HTS--CTTEEEEEEEECCTTCCTTTTCCEEEEEEEEECSSSCCCTTTTSSEECCSCCCHHHHHHHHGGGCEEEECGGGCC
T ss_pred             CCC--CCCCCCCCCEECCCCCCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             234--423110000001665440033331243002013445663223321024677656888877763367541111211


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf             56553332110331111233320011315888899999999999999976899888999998358821166636989847
Q gi|254780295|r  161 IHCQASSPIRTIDHFDVNSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY  240 (247)
Q Consensus       161 ~~~~~~~~~R~I~~~~v~~~~~~i~i~i~g~~FL~~mVR~mVG~li~v~~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~  240 (247)
                      .++..++++|++..+++.+.++++.|+|+|+||||||||+|||+|++||+|++++++|+++|+++++....++|||+|||
T Consensus       161 ~~~~~~~~~r~i~~~~~~~~~~~i~i~i~g~sFL~~qVR~mvg~ll~vg~g~~~~~~i~~~L~~~~r~~~~~~APa~GL~  240 (264)
T d1dj0a_         161 VQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHNQPESWIAELLAAKDRTLAAATAKAEGLY  240 (264)
T ss_dssp             TTCCCSCCEEEEEEEEEEEETTEEEEEEEESCCCTTHHHHHHHHHHHHHTTSSCTTHHHHHHHHCCGGGSCCCCCSTTEE
T ss_pred             CCCCCCCCCCCCCCCCCEECCCEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCE
T ss_conf             45557774222211011014837998741037999999999999999976999999999998668856685644898878


Q ss_pred             EEEEEEC
Q ss_conf             6330439
Q gi|254780295|r  241 FDSVEYS  247 (247)
Q Consensus       241 L~~V~Y~  247 (247)
                      |++|+|.
T Consensus       241 L~~V~Y~  247 (264)
T d1dj0a_         241 LVAVDYP  247 (264)
T ss_dssp             EEEEECC
T ss_pred             ECCCCCC
T ss_conf             7555368


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Pseudouridine synthase
superfamily: Pseudouridine synthase
family: Pseudouridine synthase I TruA
domain: Pseudouridine synthase I TruA
species: Escherichia coli [TaxId: 562]