BLAST/PSIBLAST alignment of GI: 254780295 and GI: 116250203 at iteration 1
>gi|116250203|ref|YP_766041.1| tRNA pseudouridine synthase A [Rhizobium leguminosarum bv. viciae 3841] Length = 272
>gi|115254851|emb|CAK05925.1| putative tRNA pseudouridine synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 272
 Score =  325 bits (833), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 190/247 (76%), Gaps = 1/247 (0%)

Query: 1   MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60
           M R+ M +EY+G  Y GWQRQ+NG S+QG+IE A+  +TGE V V GAGRTDSGVHA+ Q
Sbjct: 1   MPRFRMTVEYDGGPYVGWQRQENGPSVQGAIEAAVLSLTGETVSVRGAGRTDSGVHAMGQ 60

Query: 61  VAHFDLVREWVPVILCKALNAYLKIS-DTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119
           V H DL ++W P  L  ALNA+L+I+ + +S+L++    + F ARFSA+RR YLYRI++R
Sbjct: 61  VIHADLSKDWSPYQLQNALNAHLRIAGERVSVLDVEAAPEFFDARFSALRRHYLYRIVSR 120

Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179
           +APLALE G+AW +PK LD E M  AAQ LVGRHDF+TFR+ HCQA+SP+RT+D  DV  
Sbjct: 121 RAPLALEAGKAWWVPKVLDHEVMHAAAQRLVGRHDFSTFRAAHCQANSPVRTLDRLDVTR 180

Query: 180 FGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGL 239
            G LIEIR  A+SFLH QIRSF G+LKL G+GKWT  D+E AL+A+DRK CGP+APP+GL
Sbjct: 181 RGELIEIRATAQSFLHNQIRSFAGTLKLAGEGKWTPDDVEAALKARDRKACGPVAPPDGL 240

Query: 240 YFDSVEY 246
           YF  V+Y
Sbjct: 241 YFMQVDY 247