PSIBLAST alignment of GI: 254780295 and protein with PDB id: 1vs3
>gi|122919612|pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249
>gi|122919613|pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249
Score = 163 bits (411), Expect = 3e-38, Method: Composition-based stats.
Identities = 84/249 (33%), Positives = 122/249 (48%), Gaps = 6/249 (2%)
Query: 1 MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59
M R ++ EY+G+ + G QRQ + ++QG +E+A+ + G + AGRTD+GVHAL
Sbjct: 1 MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59
Query: 60 QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119
H D+ + +ALN L + + ++ V FHAR A+ R+Y YRI+ R
Sbjct: 60 MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117
Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179
P L + RA + + LD E M A L+GRH+F F + V
Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAE 177
Query: 180 FGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237
+E+ +SFL Q+R VG+L VG GK L+ L+ DR+ GP AP
Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237
Query: 238 GLYFDSVEY 246
GLYF Y
Sbjct: 238 GLYFVEAAY 246