PSIBLAST alignment of GI: 254780295 and protein with PDB id: 1vs3

>gi|122919612|pdb|1VS3|A Chain A, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249
>gi|122919613|pdb|1VS3|B Chain B, Crystal Structure Of The Trna Pseudouridine Synthase Trua From Thermus Thermophilus Hb8 Length = 249
 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/249 (33%), Positives = 122/249 (48%), Gaps = 6/249 (2%)

Query: 1   MIRYCMIIEYNGSGYFGWQRQ-KNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALR 59
           M R  ++ EY+G+ + G QRQ +   ++QG +E+A+  + G +     AGRTD+GVHAL 
Sbjct: 1   MRRLLLLCEYDGTLFAGLQRQGRGLRTVQGELERALPGI-GALPKAVAAGRTDAGVHALA 59

Query: 60  QVAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITR 119
              H D+        + +ALN  L   + + ++    V   FHAR  A+ R+Y YRI+ R
Sbjct: 60  MPFHVDVESAIPVEKVPEALNRLL--PEDLKVVGAREVAPDFHARKDALWRAYRYRILVR 117

Query: 120 QAPLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNS 179
             P  L + RA  + + LD E M  A   L+GRH+F  F     +            V  
Sbjct: 118 PHPSPLLRHRALWVRRPLDLEAMEEALSLLLGRHNFLGFAKEETRPGERELLEARLQVAE 177

Query: 180 FGNLIEI--RVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPE 237
               +E+      +SFL  Q+R  VG+L  VG GK     L+  L+  DR+  GP AP  
Sbjct: 178 GEAGLEVRLYFRGKSFLRGQVRGMVGTLLEVGLGKRPPESLKAILKTADRRLAGPTAPAH 237

Query: 238 GLYFDSVEY 246
           GLYF    Y
Sbjct: 238 GLYFVEAAY 246