RPSBLAST alignment for GI: 254780295 and conserved domain: COG0101

>gnl|CDD|30450 COG0101, TruA, Pseudouridylate synthase [Translation, ribosomal structure and biogenesis]. Length = 266
 Score =  290 bits (743), Expect = 3e-79
 Identities = 112/246 (45%), Positives = 148/246 (60%), Gaps = 2/246 (0%)

Query: 1   MIRYCMIIEYNGSGYFGWQRQKNGSSIQGSIEKAIFLVTGEIVVVHGAGRTDSGVHALRQ 60
           M R  + I Y+G+ + GWQRQ N  ++QG +EKA+  + GE V V GAGRTD+GVHAL Q
Sbjct: 1   MKRIALKIAYDGTRFHGWQRQPNVRTVQGELEKALSKIGGESVRVIGAGRTDAGVHALGQ 60

Query: 61  VAHFDLVREWVPVILCKALNAYLKISDTISILNLSIVDKQFHARFSAIRRSYLYRIITRQ 120
           V HFD   +     L +ALNA L     I +L+++ V   FHARFSA  R+Y Y I    
Sbjct: 61  VVHFDTPADRPLEKLVRALNALLP--PDIRVLDVAEVPDDFHARFSAKSRTYRYIIYNAP 118

Query: 121 APLALEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHFDVNSF 180
                     W +P  LD + MR AA+ L+G HDFT+FR   CQ+ SP+RTI   DV+  
Sbjct: 119 LRPPFLANYVWHVPYPLDLDAMREAAKLLLGTHDFTSFRKAGCQSKSPVRTIYRIDVSRD 178

Query: 181 GNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLEKALQAQDRKECGPLAPPEGLY 240
           G+LI I +   SFL   +R+ VG+L LVG GK     +++ L+A+DRK  GP AP EGLY
Sbjct: 179 GDLIVIDISGNSFLWHMVRNIVGALLLVGRGKRPVEWIKELLEAKDRKLAGPTAPAEGLY 238

Query: 241 FDSVEY 246
              V+Y
Sbjct: 239 LVRVDY 244