RPSBLAST alignment for GI: 254780295 and conserved domain: KOG4393

>gnl|CDD|39594 KOG4393, KOG4393, KOG4393, Predicted pseudouridylate synthase [RNA processing and modification, Translation, ribosomal structure and biogenesis]. Length = 295

 Score =  142 bits (358), Expect = 1e-34
 Identities = 77/271 (28%), Positives = 119/271 (43%), Gaps = 27/271 (9%)

Query: 3   RYCMIIEYNGSGYFGWQRQ--KNGSSIQGSIEKAIFLVTG-EIVVVHGAGRTDSGVHALR 59
           RY + I Y+G+ +     +  K   +IQG +E+A    TG + + +  + RTD+GVHA  
Sbjct: 6   RYLLKIPYDGTAFEESAERLSKVARTIQGFLEEASEEQTGLDRLDLESSSRTDAGVHAYL 65

Query: 60  QVAHFDLVREWV--PVILCKALNAYLKISD-TISILNLSIVDKQFHARFSAIRRSYLYRI 116
             AH+ + R          +A+N  L+  D  I ++++  V   FHAR+SA  R+Y YR+
Sbjct: 66  NAAHYIVPRFSGSQQQAKDRAVNTVLQRKDGDIRVIDVRCVPSNFHARYSASSRTYFYRL 125

Query: 117 ITRQAPLA-LEKGRAWLIPKSLDCENMRIAAQHLVGRHDFTTFRSIHCQASSPIRTIDHF 175
            +   PL+  E+ R W +P+ L+   M+ AA    G HDF+ F         P  T    
Sbjct: 126 ASGSDPLSIFERDRCWHLPEELNARKMQEAAPLFEGSHDFSAFTEATSTVYFPSITERRL 185

Query: 176 DV----------------NSFGNLIEIRVVARSFLHTQIRSFVGSLKLVGDGKWTSTDLE 219
            V                    N+  +      FL+ Q+R     L   G        + 
Sbjct: 186 SVLNNGDPLACSNQPETEGVTTNVGNVEGETEGFLYRQVRRMRAYLVTAGSRALLYHQVL 245

Query: 220 KALQAQDR----KECGPLAPPEGLYFDSVEY 246
             L+ +D     K  G +APP GL+  SVEY
Sbjct: 246 YILEVRDIVGLLKCVGTVAPPHGLFLSSVEY 276