HHsearch alignment for GI: 254780297 and conserved domain: COG0242
>COG0242 Def N-formylmethionyl-tRNA deformylase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=398.05 Aligned_cols=167 Identities=49% Similarity=0.884 Sum_probs=160.4
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCC-CCCCCCEECCCC
Q ss_conf 9877364576931052121378788899999999998650047642130220144000377316432-334821001644
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIEKINSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHA-HRKNPMVFINPK 79 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~~~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~-~~~~~~~~iNP~ 79 (170)
T Consensus 1 m~i~~Iv~~~~p~Lr~~a~~V~~~d~~l~~li~dM~etm~~~~GVGLAApQIGi~kri~vi~~~~~~~~~~~~~vlINP~ 80 (168)
T COG0242 1 MAIREIVKYPDPRLRQVAKPVEEVDDELRQLIDDMLETMYAAEGVGLAAPQIGISKRIFVIDVEEDGRPKEPPLVLINPE 80 (168)
T ss_pred CCCCCCEECCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEHHCCCEEEEEEEECCCCCCCCCCCEEEECCE
T ss_conf 97432110897788303503301599999999999999986799066001149616699999168667676756999999
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHHHHHHHH
Q ss_conf 20100000111000001223210121100000246323585579997297646432700131976853647889999999
Q gi|254780297|r 80 IITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRLKRDMIT 159 (170)
Q Consensus 80 I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~kr~~~~ 159 (170)
T Consensus 81 I~~~~~~~~~~~EGCLSvP~~~~~V~R~~~I~V~~~D~~G~~~~~~a~G~lA~~iQHEiDHLnGvlf~D~l~~~k~~~~~ 160 (168)
T COG0242 81 IISKSEETLTGEEGCLSVPGVRGEVERPERITVKYLDRNGKPQELEAEGLLARCIQHEIDHLNGVLFIDRLSPLKRDRLK 160 (168)
T ss_pred EEECCCCCCCCCCCEEEECCCEEEEECCCEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCEEEEEECCHHHHHHHH
T ss_conf 86637760226756686169601462563899999969999999997472557767650000758750113835440688
Q ss_pred HHHHHHHH
Q ss_conf 99999985
Q gi|254780297|r 160 KKMSKLVQ 167 (170)
Q Consensus 160 ~k~~k~~k 167 (170)
T Consensus 161 ~~~~~~~~ 168 (168)
T COG0242 161 KKLKKLKK 168 (168)
T ss_pred HHHHHHCC
T ss_conf 87787429