HHsearch alignment of GI: 254780297 and MMDB domain: 1lm4_A_

>1lm4_A (A:) Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus}
Probab=100.00  E-value=0  Score=365.99  Aligned_cols=164  Identities=27%  Similarity=0.399  Sum_probs=149.7

Q ss_pred             CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHH------------CCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf             9877364576931052121378-7888999999999986500------------47642130220144000377316432
Q gi|254780297|r    1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYS------------TDGIGLAAVQIGVLYRLVVIDLQDHA   67 (170)
Q Consensus         1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~------------~~GvGLAA~QIG~~~ri~vv~~~~~~   67 (170)
                      |++++|++||||+||++|.||+ .+++++++++++|.+||++            .+||||||||||+++|+|+++.+++.
T Consensus        13 m~i~~Iv~~~~p~Lr~~a~~V~~~~~~e~~~li~~m~~tm~~~~~~~~~~~~~~~~gvGLAApQIG~~~ri~vi~~~~~~   92 (194)
T 1lm4_A           13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDG   92 (194)
T ss_dssp             CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCS
T ss_pred             CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHEEEEECCCCC
T ss_conf             07723541899799267723788889899999999999999856667776425689869860214844626665158654


Q ss_pred             CC-CCCCEECCCCCCCHHHHH--HHHHHHCCCCCC-CCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf             33-482100164420100000--111000001223-21012110000024632358557999729764643270013197
Q gi|254780297|r   68 HR-KNPMVFINPKIITFSDDF--SVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG  143 (170)
Q Consensus        68 ~~-~~~~~~iNP~I~~~s~e~--~~~~EGCLS~Pg-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G  143 (170)
                      .. ..+.+||||+|++.|.++  ..++|||||+|| +++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|
T Consensus        93 ~~~~~~~~lINP~I~~~s~e~~~~~~~EGClS~Pg~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G  172 (194)
T 1lm4_A           93 SGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG  172 (194)
T ss_dssp             SSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf             43445301228712430442210124667405533346634754849999995899999999776320567378682088


Q ss_pred             EEEEEECCHHHHHHHHHHHHH
Q ss_conf             685364788999999999999
Q gi|254780297|r  144 ILFIDHLSRLKRDMITKKMSK  164 (170)
Q Consensus       144 ~lf~drls~~kr~~~~~k~~k  164 (170)
                      ++|+||+++.++..+.++++|
T Consensus       173 ~l~~Dr~~~~~~~~~~~~~~~  193 (194)
T 1lm4_A          173 VMFYDHIDKNHPLQPHTDAVE  193 (194)
T ss_dssp             CCGGGGCCSSSTTCCCTTCEE
T ss_pred             EEEEEECCCCCCCCCCCCCCC
T ss_conf             876871386566747756002