HHsearch alignment of GI: 254780297 and MMDB domain: 1lm4_A_
>1lm4_A (A:) Peptide deformylase PDF1; metalloenzyme, hydrolase; 1.45A {Staphylococcus aureus}
Probab=100.00 E-value=0 Score=365.99 Aligned_cols=164 Identities=27% Similarity=0.399 Sum_probs=149.7
Q ss_pred CCCCCHHHCCCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHH------------CCCCCEEEHHHCCCCCEEEEECCCCC
Q ss_conf 9877364576931052121378-7888999999999986500------------47642130220144000377316432
Q gi|254780297|r 1 MVKKPLVIFPDPILRRVSRPIE-KINSDIMNLIDNMLEVMYS------------TDGIGLAAVQIGVLYRLVVIDLQDHA 67 (170)
Q Consensus 1 M~~~~Iv~~~dp~L~~~~~~v~-~~~~~~~~li~dm~~tm~~------------~~GvGLAA~QIG~~~ri~vv~~~~~~ 67 (170)
|++++|++||||+||++|.||+ .+++++++++++|.+||++ .+||||||||||+++|+|+++.+++.
T Consensus 13 m~i~~Iv~~~~p~Lr~~a~~V~~~~~~e~~~li~~m~~tm~~~~~~~~~~~~~~~~gvGLAApQIG~~~ri~vi~~~~~~ 92 (194)
T 1lm4_A 13 LTMKDIIRDGHPTLRQKAAELELPLTKEEKETLIAMREFLVNSQDEEIAKRYGLRSGVGLAAPQINISKRMIAVLIPDDG 92 (194)
T ss_dssp CCGGGSCCTTCGGGGSCCBCCCSSCCHHHHHHHHHHHHHHHHHHSHHHHHHHTCCCBSEEEGGGGTCCBSEEEEEECCCS
T ss_pred CCHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHCCHHHHEEEEECCCCC
T ss_conf 07723541899799267723788889899999999999999856667776425689869860214844626665158654
Q ss_pred CC-CCCCEECCCCCCCHHHHH--HHHHHHCCCCCC-CCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCC
Q ss_conf 33-482100164420100000--111000001223-21012110000024632358557999729764643270013197
Q gi|254780297|r 68 HR-KNPMVFINPKIITFSDDF--SVYQEGCLSIPD-YRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNG 143 (170)
Q Consensus 68 ~~-~~~~~~iNP~I~~~s~e~--~~~~EGCLS~Pg-~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 143 (170)
.. ..+.+||||+|++.|.++ ..++|||||+|| +++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|
T Consensus 93 ~~~~~~~~lINP~I~~~s~e~~~~~~~EGClS~Pg~~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G 172 (194)
T 1lm4_A 93 SGKSYDYMLVNPKIVSHSVQEAYLPTGEGXLSVDDNVAGLVHRHNRITIKAKDIEGNDIQLRLKGYPAIVFQHEIDHLNG 172 (194)
T ss_dssp SSCCEEEEEEEEEEEEECSSEEECTTCCCCTTCSSCCCSCCCEESEEEEEEECTTSCEEEEEEEHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCC
T ss_conf 43445301228712430442210124667405533346634754849999995899999999776320567378682088
Q ss_pred EEEEEECCHHHHHHHHHHHHH
Q ss_conf 685364788999999999999
Q gi|254780297|r 144 ILFIDHLSRLKRDMITKKMSK 164 (170)
Q Consensus 144 ~lf~drls~~kr~~~~~k~~k 164 (170)
++|+||+++.++..+.++++|
T Consensus 173 ~l~~Dr~~~~~~~~~~~~~~~ 193 (194)
T 1lm4_A 173 VMFYDHIDKNHPLQPHTDAVE 193 (194)
T ss_dssp CCGGGGCCSSSTTCCCTTCEE
T ss_pred EEEEEECCCCCCCCCCCCCCC
T ss_conf 876871386566747756002