HHsearch alignment of GI: 254780297 and MMDB domain: 1y6h_A_

>1y6h_A (A:) Peptide deformylase; open and close conformation, PDF, hydrolase; 2.20A {Leptospira interrogans}
Probab=100.00  E-value=0  Score=377.22  Aligned_cols=167  Identities=33%  Similarity=0.555  Sum_probs=157.8

Q ss_pred             CCCCHHHCCCCCCCCCCCCCCC---CCHHHHHHHHHHHHHHHHCCCCCEEEHHHCCCCCEEEEECCCCCCC-----CCCC
Q ss_conf             8773645769310521213787---8889999999999865004764213022014400037731643233-----4821
Q gi|254780297|r    2 VKKPLVIFPDPILRRVSRPIEK---INSDIMNLIDNMLEVMYSTDGIGLAAVQIGVLYRLVVIDLQDHAHR-----KNPM   73 (170)
Q Consensus         2 ~~~~Iv~~~dp~L~~~~~~v~~---~~~~~~~li~dm~~tm~~~~GvGLAA~QIG~~~ri~vv~~~~~~~~-----~~~~   73 (170)
                      |+++|++||||+||++|+||+.   +++++++++++|.+||++++|+||||||||+++|+|+++.++....     ..+.
T Consensus         1 ai~~I~~~~dp~Lr~~~~~V~~~d~~~~~i~~li~~m~~tm~~~~gvGLAApQIG~~~ri~vi~~~~~~~~~~~~~~~~~   80 (177)
T 1y6h_A            1 SVRKILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAEGVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPER   80 (177)
T ss_dssp             CCCCCCCTTCGGGGSCCBCCCGGGTTSHHHHHHHHHHHHHHHHTTCSEEEGGGGTCCBSEEEECCSSCTTSTTSCCCCCE
T ss_pred             CCCCHHCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHEEEEEEEEEECCCCCCCCCCCCCCEE
T ss_conf             95722028987996137007831248899999999999999872754520033101152899724755456666543304


Q ss_pred             EECCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHCCHHEEEEECCCCCEEEEEEECCEEEEEEEEHHHHCCEEEEEECCHH
Q ss_conf             00164420100000111000001223210121100000246323585579997297646432700131976853647889
Q gi|254780297|r   74 VFINPKIITFSDDFSVYQEGCLSIPDYRADVKRSAFITVRYMDCNAQHQIIYADGLLATCLQHELDHLNGILFIDHLSRL  153 (170)
Q Consensus        74 ~~iNP~I~~~s~e~~~~~EGCLS~Pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~g~~Ar~~QHEiDHL~G~lf~drls~~  153 (170)
                      +||||+|++.|+++..++|||||+||+++.|.||.+|+|+|+|++|++++.+++||+|||+|||+|||+|++|+||+++.
T Consensus        81 vliNP~I~~~s~~~~~~~EgClS~pg~~~~V~R~~~I~v~~~d~~G~~~~~~~~G~~Ar~~QHEiDHL~G~l~~Drl~~~  160 (177)
T 1y6h_A           81 IILNPVITPLTKDTSGFWEGCLSVPGMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDT  160 (177)
T ss_dssp             EEEEEEEEECCSCEEEEEEEETTEEEEEEEEEEESEEEEEEECTTCCEEEEEEEHHHHHHHHHHHHHHTTCCGGGGBSCT
T ss_pred             EECCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEEEEECCHHHHCCCEEECHHHHHHHHHHHHHHCCCCCHHHCCHH
T ss_conf             64041898732515787205777798302432340123575665440554186738899999978972899006622843


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             999999999999850
Q gi|254780297|r  154 KRDMITKKMSKLVQL  168 (170)
Q Consensus       154 kr~~~~~k~~k~~k~  168 (170)
                      ++..+.++++++.+.
T Consensus       161 ~~~~~~~~~~~~~~~  175 (177)
T 1y6h_A          161 KLFGFNETLDSSHNV  175 (177)
T ss_dssp             TSEEEHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHH
T ss_conf             366789999987751